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ABSTRACT Phytoplankton is an essential resource in aquatic ecosystems, situated at the base of aquatic food webs. Plastic pollution can impact these organisms, potentially affecting the functioning of aquatic ecosystems. The interaction between plastics and phytoplankton is multifaceted: while microplastics can exert toxic effects on phytoplankton, plastics can also act as a substrate for colonisation. By reviewing the existing literature, this study aims to address pivotal questions concerning the intricate interplay among plastics and phytoplankton/phytobenthos and analyse impacts on fundamental ecosystem processes (e.g. primary production, nutrient cycling). This investigation spans both marine and freshwater ecosystems, examining diverse organisational levels from subcellular processes to entire ecosystems. The diverse chemical composition of plastics, along with their variable properties and role in forming the “plastisphere”, underscores the complexity of their influences on aquatic environments. Morphological changes, alterations in metabolic processes, defence and stress responses, including homoaggregation and extracellular polysaccharide biosynthesis, represent adaptive strategies employed by phytoplankton to cope with plastic‐induced stress. Plastics also serve as potential habitats for harmful algae and invasive species, thereby influencing biodiversity and environmental conditions. Processes affected by phytoplankton–plastic interaction can have cascading effects throughout the aquatic food web via altered bottom‐up and top‐down processes. This review emphasises that our understanding of how these multiple interactions compare in impact on natural processes is far from complete, and uncertainty persists regarding whether they drive significant alterations in ecological variables. A lack of comprehensive investigation poses a risk of overlooking fundamental aspects in addressing the environmental challenges associated with widespread plastic pollution. [ABSTRACT FROM AUTHOR]

Mixotrophs can prey on micro-autotrophic algae and also can compete with autotrophs for light and nutrients, forming an intraguild predation structure. In order to capture this character of mixotrophs and describe the autotrophs–mixotrophs interactions in a poorly mixed water column, we develop a reaction–diffusion model. The dynamics of this system, including dissipation, Turing instability, existence and stability of constant steady state solutions, and existence and nonexistence of nonconstant steady state solutions, are well explored. The influence of the autotrophic behavior of mixotrophs on autotrophs and mixotrophs biomass density is also considered by using extensive simulations. The result of numerical simulation shows that the proportion of autotrophic behaviors of mixotrophs plays an important role, affecting the coexistence of autotrophs and mixotrophs, beneficial to phytoplankton biodiversity. [ABSTRACT FROM AUTHOR]

In oligotrophic oceans, the smallest eukaryotic phytoplankton are both significant primary producers and predators of abundant bacteria such as Prochlorococcus. However, the drivers and consequences of community dynamics among these diverse protists are not well understood. Here, we investigated how trophic strategies along the autotrophy‐mixotrophy spectrum vary in importance over time and across depths at Station ALOHA in the North Pacific Subtropical Gyre. We combined picoeukaryote community composition from a 28‐month time‐series with traits of diverse phytoplankton isolates from the same location, to examine trophic strategies across 13 operational taxonomic units and 8 taxonomic classes. We found that autotrophs and slower‐grazing mixotrophs tended to prevail deeper in the photic zone, while the most voracious mixotrophs were relatively abundant near the surface. Within the mixed layer, there was greater phagotrophy when conditions were most stratified and when Chl a concentrations were lowest, although the greatest temporal variation in trophic strategy occurred at intermediate depths (45–100 m). Dynamics at this site are consistent with previously described spatial patterns of trophic strategies. The success of relatively phagotrophic phytoplankton at shallower depths in the most stratified waters suggests that phagotrophy is a competitive strategy for acquiring nutrients when energy from light is plentiful. [ABSTRACT FROM AUTHOR]

Lake Jošava (Croatia) is a shallow reservoir surrounded by agricultural land. In the present study, the trophic cascade was tested by examining the effects of stocking with common carp on plankton and periphytic microphytes. Before stocking, the phytoplankton community was dominated by the chrysophyte Synura uvella. In the epilithon and epiphyton, the predominant diatoms were prostrate, stalk-forming, and motile taxa representing an important food source for adult copepods. After stocking, phytoplankton biomass declined and the community shifted towards small centric diatoms, allowing the small-bodied zooplankton to exploit them. The lower biomass of adult copepods allowed rotifers to proliferate and exploit phytoplankton, while small cladocerans and nauplii fed primarily on epilithon. One month after stocking, phytoplankton was dominated by cryptophytes, small centric diatoms and chlorophytes, which were an important food for rotifers, while none of the zooplankton groups showed a significant relationship with the epilithic and epiphytic communities. By the end of the experiment, food was scarce due to reduced biomass of autotrophs, and zooplankton possibly began to feed on other sources. Our results add to the knowledge about the trophic cascade hypothesis in small shallow reservoirs. [ABSTRACT FROM AUTHOR]

When subjected to dietary caloric restriction (CR), individual animals often outlive well‐fed conspecifics. Here, we address whether CR also extends lifespan in plants. Whereas caloric intake in animals comes from ingestion, in plants it derives from photosynthesis. Thus, factors that reduce photosynthesis, such as reduced light intensity, can induce CR. In two lab experiments investigating the aquatic macrophyte Lemna minor, we tracked hundreds of individuals longitudinally, with light intensity—and hence, CR—manipulated using neutral‐density filters. In both experiments, CR dramatically increased lifespan through a process of temporal scaling. Moreover, the magnitude of lifespan extension accorded with the assumptions that (a) light intensity positively relates to photosynthesis following Michaelis–Menten kinetics, and (b) photosynthesis negatively relates to lifespan via a power law. Our results emphasize that CR‐mediated lifespan extension applies to autotrophs as well as heterotrophs, and suggest that variation in light intensity has quantitatively predictable effects on plant aging trajectories. [ABSTRACT FROM AUTHOR]

Terrestrial input to marine and freshwater ecosystems colors the water yellowbrown, causing a phenomenon called "brownification". The effect of brownification on the marine pelagic microbial food web was studied in the oligotrophic eastern Mediterranean in June 2021 by adding HuminFeed in a 15-day mesocosm experiment with 2 treatments: Control (C, no addition) and HuminFeed (HF, single dose of HuminFeed, 2 mg L-1); and 3 replicates per treatment. HuminFeed caused shading, leading to a decrease in the abundance of photo-autotrophic organisms (cyanobacteria Synechococcus and diatoms). Bacteria were positively affected by the HF addition (mainly in terms of production rather than abundance), benefiting either directly from the dissolved organic carbon (DOC) contained in HuminFeed or indirectly from the trophic cascade through the food web. Despite the decrease in HF bacterial abundance during the experiment, an increase in both the high nucleic acid containing bacteria% and heterotrophic bacterial production were observed, suggesting higher activity at the single cell level. In the HF treatment, the increased abundance of dinoflagellates observed could be due to either a dominance of mixotrophic species or a release from predation by copepods. Both ciliates and copepods were severely impacted by HuminFeed, showing lower abundance and distorted forms (ciliates) and reduced reproductive potential (copepods). In conclusion, in the ultraoligotrophic eastern Mediterranean, the simulated brownification negatively affected autotrophs and top predators while benefiting bacteria, thus indicating a shift in the structure of the plankton food web. [ABSTRACT FROM AUTHOR]

Synthetic autotrophy is a promising avenue to sustainable bioproduction from CO2. Here, we use iterative laboratory evolution to generate several distinct autotrophic strains. Utilising this genetic diversity, we identify that just three mutations are sufficient for Escherichia coli to grow autotrophically, when introduced alongside non-native energy (formate dehydrogenase) and carbon-fixing (RuBisCO, phosphoribulokinase, carbonic anhydrase) modules. The mutated genes are involved in glycolysis (pgi), central-carbon regulation (crp), and RNA transcription (rpoB). The pgi mutation reduces the enzyme's activity, thereby stabilising the carbon-fixing cycle by capping a major branching flux. For the other two mutations, we observe down-regulation of several metabolic pathways and increased expression of native genes associated with the carbon-fixing module (rpiB) and the energy module (fdoGH), as well as an increased ratio of NADH/NAD+ - the cycle's electron-donor. This study demonstrates the malleability of metabolism and its capacity to switch trophic modes using only a small number of genetic changes and could facilitate transforming other heterotrophic organisms into autotrophs. [ABSTRACT FROM AUTHOR]

Phytoplankton are usually considered autotrophs, but an increasing number of studies show that many taxa are able also to use organic carbon. Acquiring nutrients and energy from different sources might enable an efficient uptake of required substances and provide a strategy to deal with varying resource availability, especially in highly dynamic ecosystems such as estuaries. In our study, we investigated the effects of 31 organic carbon sources on the growth (proxied by differences in cell counts after 24 h exposure) of 17 phytoplankton strains from the Elbe estuary spanning four functional groups. All of our strains were able to make use of at least 1 and up to 26 organic compounds for growth. Pico-sized green algae such as Mychonastes, as well as the nano-sized green alga Monoraphidium in particular were positively affected by a high variety of substances. Reduced light availability, typically appearing in turbid estuaries and similar habitats, resulted in an overall poorer ability to use organic substances for growth, indicating that organic carbon acquisition was not primarily a strategy to deal with darkness. Our results give further evidence for mixotrophy being a ubiquitous ability of phytoplankton and highlight the importance to consider this trophic strategy in research. [ABSTRACT FROM AUTHOR]

Abstract Increased food demand, reflecting a rising global human population, attaining 8 billion in 2022, has furthered the intensification of farmed aquatic animal production. Intensification practices can be resource demanding for micro and macronutrients, dedicated feeds, fossil fuels, chemotherapeutics, and water. Water replaces evaporative losses and may be used to dilute nutrient‐rich wastewater. As an alternative to wastewater discharge, biofloc technology (BFT) uses microbes to manage nutrient levels in production systems. A microbial community grown at high densities can assimilate waste metabolites for growth. This is promoted by increasing the carbon–nitrogen (C:N) ratio using a combination of aquafeed fed to the fish and an additional carbohydrate source, for example, starch, molasses, or bran. The microbial biomass offers a continuous and additional food source to the farmed animal, thus reducing the need for finished aquafeeds and lowering the feed conversion ratio. Although the approach relies on multiple interacting species, BFT can be deployed in relatively low technology settings. This review considers the basis of BFT and identifies areas for innovation and expansion. For example, control of light quantity and quality can influence the biofloc and hence the growth of cultured species. Research on biofloc aquaculture is dominated by studies using tilapia and shrimp, but the technology could be applied to other species, particularly species that are tolerant of biofloc conditions and not highly carnivorous. Biofloc may be a useful biosecurity tool for all or part of the life cycle, and meals made from dried biofloc may enhance the production of cultured species. The key benefits of BFT can potentially be seen in reduced water consumption, lower feed requirements, and improved fish health. This review differs from current review papers in proposing the use of a life cycle assessment in conjunction with BFT, which may be a useful tool for describing and communicating the relative benefits of biofloc systems and their wider environmental impact. This study will serve as a useful knowledge base of BFT information for students, researchers, and stakeholders alike, offering a central source of the main aspects around the culturing of biofloc, key parameters, common species used, areas of potential improvement, and a discussion on where the future of BFT may lie.

Litter colonisation by fungi and bacteria is essential for decomposition. Although algae are not directly related to the decomposition process, in lentic environment, they usually colonise leaf litter rapidly and stimulate the activity of heterotrophs. We hypothesised that the timing of litter entering the water determines a rapid colonisation by algae, which affects fungal and bacterial colonisation, nutrient dynamics of leaf litter, and decomposition rates.We incubated two leaf litter species, Nothofagus antarctica and Potentilla anserina, in the littoral zone of a lake under two conditions: submerged from the beginning (aquatic: AQ) and near the shoreline (initially terrestrial: T‐A). The T‐A treatment was flooded on day 44, so the decomposition process continued in aquatic conditions. We estimated two decomposition rates, one before day 42 (k42) and one for the whole incubation period (ka), algal and fungal biomass, bacterial abundance, and nutrient (P and N) content in leaf litter throughout the experiment.The timing of litter entering the water affected decomposition rates, k42 and ka were faster in AQ than in T‐A conditions and only the ka was faster in P. anserina than in N. antarctica.Microbial colonisation was also affected. Algal biomass was always higher in the AQ treatment, but bacterial abundance differed between treatments and changed through the decomposition process. Fungal biomass depended on both the treatment and the litter species. Bacterial–algal and fungal–algal relationships in AQ treatment were synergistic and independent of time, while, with terrestrial exposure, microbial relationships depended on the stage of the decomposition process.Nutrient dynamics depended on the treatment and the species, but both species tended to gain or maintain nutrient content throughout the experiment. Fungi were related to N:P changes through the decomposition process.Our results suggest that the conspicuous growth of an autotrophic biofilm on some litter (in P. anserina) might retard decomposition but at the same time stimulate heterotrophic colonisation. Therefore, the study of decomposition in the littoral zone of lakes must include the autotrophic component of biofilms that grow on detritus, since it alters organic matter consumption by decomposers and nutrient dynamics. [ABSTRACT FROM AUTHOR]

Tidal wetlands undergoing regular tidal inundation contribute more than 60% CO2 uptake of the coastal ocean. However, a comprehensive understanding of tidal microbial spatial distribution is poorly known, giving rise to previously ignored perturbations of microbial biomass in heterogeneous nearshore aquifers. In most traditional reactive models of nearshore aquifers until now, the spatio‐temporal production of microbial biomass was not considered, and reaction rates depended only on the first‐order decay of nutrient inputs. Here, using a biomass‐based model with tidal fluctuations, we identify autotrophic and heterotrophic high biomass zones that can dictate the hot spots of aerobic respiration, nitrification, and denitrification. Crucially, the accretive microbial biomass in eutrophic environments may minimize the hydraulic conductivity and weaken the tide‐driven upper saline plume, but slightly enhance seawater wedge intrusion. In addition, our simulations recreated empirical patterns of N removal in contaminated subterranean estuaries and led to a description of general rules of autotrophic and heterotrophic processes in sediments. Our findings point to previously ignored perturbations of microbial biomass to reactions in nearshore aquifers and underscore that the microbial distribution in coastal sediments has its inherent regularity to environmental alteration. [ABSTRACT FROM AUTHOR]

Increased food demand, reflecting a rising global human population, attaining 8 billion in 2022, has furthered the intensification of farmed aquatic animal production. Intensification practices can be resource demanding for micro and macronutrients, dedicated feeds, fossil fuels, chemotherapeutics, and water. Water replaces evaporative losses and may be used to dilute nutrient-rich wastewater. As an alternative to wastewater discharge, biofloc technology (BFT) uses microbes to manage nutrient levels in production systems. Amicrobial community grown at high densities can assimilate waste metabolites for growth. This is promoted by increasing the carbon--nitrogen (C:N) ratio using a combination of aquafeed fed to the fish and an additional carbohydrate source, for example, starch, molasses, or bran. The microbial biomass offers a continuous and additional food source to the farmed animal, thus reducing the need for finished aquafeeds and lowering the feed conversion ratio. Although the approach relies on multiple interacting species, BFT can be deployed in relatively low technology settings. This review considers the basis of BFT and identifies areas for innovation and expansion. For example, control of light quantity and quality can influence the biofloc and hence the growth of cultured species. Research on biofloc aquaculture is dominated by studies using tilapia and shrimp, but the technology could be applied to other species, particularly species that are tolerant of biofloc conditions and not highly carnivorous. Biofloc may be a useful biosecurity tool for all or part of the life cycle, and meals made from dried biofloc may enhance the production of cultured species. The key benefits of BFT can potentially be seen in reduced water consumption, lower feed requirements, and improved fish health. This review differs from current review papers in proposing the use of a life cycle assessment in conjunction with BFT, which may be a useful tool for describing and communicating the relative benefits of biofloc systems and their wider environmental impact. This study will serve as a useful knowledge base of BFT information for students, researchers, and stakeholders alike, offering a central source of the main aspects around the culturing of biofloc, key parameters, common species used, areas of potential improvement, and a discussion on where the future of BFT may lie. [ABSTRACT FROM AUTHOR]

Giant viruses (GV) are widespread in various ecosystems and ecological niches of the biosphere, most commonly in marine and freshwater aquatic ecosystems and soils. These viruses infect protists, a paraphyletic group of various unicellular, syncytial, and protozoan multicellular eukaryotes that are not true animals, plants, or fungus. The morphologically and functionally diverse group of protists includes parasites, commensals, or mutualistic symbionts of eukaryots, as well as heterotrophs, autotrophs, and mixotrophs. These giant viruses are currently classified into several families: Mimiviridae, Pithoviridae, Pandoraviridae, Phycodnaviridae, and the Mollivirus genus. GVs of unicellular protists belonging to the Mimiviridae family mainly infect the species of the Acanthamoeba genus. In this review, we provide the available information concerning giant viruses of the Mimiviridae family infecting other protists. These viruses include: Phaeocystis globosa virus PgV-16T (PgV), Aureococcus anophageff erens virus (AaV), Bodo saltans virus (BsV), Chrysochromulina ericina virus (CeV), and Phaeocystis pouchetii virus (PpV), which infect phytoplanktonic protists, as well as a giant virus of microzooplanktonic species, the Cafeteria roenbergensis virus (CroV). Th e review focuses on the major differences between these viruses and typical objects of current virology, their importance for understanding the evolutionary processes of genomes, genes, proteins, the biosynthetic and defense systems of organisms, as well as the important role of GV in regulating the aquatic microorganisms abundance and species diversity, carbon transfer and nutrient recycling in marine and freshwater reservoirs. Writing this review was motivated by the intention to inspire the interest of scientists in studying viruses as the most widespread biological creatures on Earth and ubiquitous symbiotic partners of all three domains of life. [ABSTRACT FROM AUTHOR]

A mathematical model with the intraguild predation structure is proposed to describe the interactions of autotrophs and mixotrophs containing light and nutrients in a well-mixed aquatic ecosystem. The dissipation, existence and stability of equilibria of the model are proved, and the ecological reproductive indexes for the extinction, survival and coexistence of autotrophs and mixotrophs are established. We also consider the influence of Holling type functional responses and abiotic factors on the coexistence and biomass of autotrophs and mixotrophs. It is shown that the intraguild predation structure is beneficial to phytoplankton biodiversity and provides an explanation for the phytoplankton paradox.

The oligotrophy of the southern Adriatic Sea is characterized by seasonal stratification which enables nutrient supply to the euphotic layer. A set of interdisciplinary methods was used to elucidate the diversity and co-dependency of bacterio- and phytoplankton of the water column during the stratification period of July 2021. A total of 95 taxa were determined by microscopy: 58 diatoms, 27 dinoflagellates, 6 coccolithophores, and 4 other autotrophs, which included Chlorophyceae, Chrysophyceae, and Cryptophytes. Nanophytoplankton abundances were higher in comparison to microphytoplankton. The prokaryotic plankton community as revealed by HTS was dominated by Proteobacteria (41–73%), Bacteroidota (9.5–27%), and cyanobacteria (1–10%), while the eukaryotic plankton community was composed of parasitic Syndiniales (45–80%), Ochrophyta (2–18%), Ciliophora (2–21%), Chlorophytes (2–4%), Haptophytes (1–4%), Bacillariophyta (1–13%), Pelagophyta (0.5–12%) and Chrysophyta (0.5–3%). Flow cytometry analysis has recorded Prochlorococcus and photosynthetic picoeukaryotes as more abundant in deep chlorophyll maximum (DCM), and Synechococcus and heterotrophic bacteria as most abundant in surface and thermocline layers. Surface, thermocline, and DCM layers were distinct considering community diversity, temperature, and nutrient correlations, while extreme nutrient values at the beginning of the investigating period indicated a possible nutrient flux. Nutrient and temperature were recognized as the main environmental drivers of phytoplankton and bacterioplankton community abundance. [ABSTRACT FROM AUTHOR]

Fractionation of active biomass in a five-stage Bardenpho process was accomplished using an MS Excel wastewater treatment plant modeling tool based on Activated Sludge Model No. 3 extended with a bio-P module. The biomass fractions within the treatment system were predicted as autotrophs, ordinary heterotrophs, and phosphorus accumulating organisms (PAOs). Several simulations were performed in a Bardenpho process using various C/N/P ratios in primary effluent. Biomass fractionation was obtained from steady-state simulation results. The results suggest that the mass percentage of autotrophs, heterotrophs, and PAOs in active biomass range from 1.7 to 7.8%, 5.7–69.0%, and 23.2–92.6%, respectively, depending on characteristics of primary effluent. Results of principal component analysis showed that TKN/COD ratio in primary effluent determines the population of autotrophs and ordinary heterotrophs whereas PAO population is mainly a function of TP/COD ratio. [ABSTRACT FROM AUTHOR]

The availability of underwater light, as primary energy source for all aquatic photoautotrophs, is (and will further be) altered by changing precipitation, water turbidity, mixing depth, and terrestrial input of chromophoric dissolved organic matter (CDOM). While experimental manipulations of CDOM input and turbidity are frequent, they often involve multiple interdependent changes (light, nutrients, C‐supply). To create a baseline for the expected effects of light reduction alone, we performed a weighted meta‐analysis on 240 published experiments (from 108 studies yielding 2500 effect sizes) that directly reduced light availability and measured marine autotroph responses. Across all organisms, habitats, and response variables, reduced light led to an average 23% reduction in biomass‐related performance, whereas the effect sizes on physiological performance did not significantly differ from zero. Especially, pigment content increased with reduced light, which indicated a strong physiological plasticity in response to diminished light. This acclimation potential was also indicated by light reduction effects minimized if the experiments lasted longer. Nevertheless, the performance (especially biomass accrual) was reduced the more the less light intensity remained available. Light reduction effects were also more negative at higher temperatures if ambient light conditions were poor. Macrophytes or benthic systems were more negatively affected by light reduction than microalgae or plankton systems, especially in physiological responses were microalgae and plankton showed slightly positive responses. Otherwise, the effect magnitudes remained surprisingly consistent across habitats and aspects of experimental design. Therefore, the strong observed log–linear relationship between remaining light and autotrophic performance can be used as a baseline to predict marine primary production in future light climate. [ABSTRACT FROM AUTHOR]

Conventional analyses suggest that the metabolism of heterotrophs is thermally more sensitive than that of autotrophs, implying that warming leads to pronounced trophodynamic imbalances. However, these analyses inappropriately combine within- and across-taxa trends. Our new analysis separates these, revealing that 92% of the difference in the apparent thermal sensitivity between autotrophic and heterotrophic protists does indeed arise from within-taxa responses. Fitness differences among taxa adapted to different temperature regimes only partially compensate for the positive biochemical relationship between temperature and growth rate within taxa, supporting the hotter-is-partially-better hypothesis. Our work highlights the importance of separating within- and across-taxa responses when comparing temperature sensitivities between groups, which is relevant to how trophic imbalances and carbon fluxes respond to warming. [ABSTRACT FROM AUTHOR]

Chloroplasts are cellular organelles specific to plants, containing pigments, including chlorophyll, necessary for photosynthesis. Our short paper is a discussion of cases of chloroplast-animal cell endosymbiosis, as well as the potential applications of chloroplast transfer to animals, something that has not yet been accomplished by the research groups involved in this challenge. [ABSTRACT FROM AUTHOR]

Autotrophic and heterotrophic microbes in stream biofilms dominate biogeochemical cycling and rely on nutrient and energy resources for growth and productivity. In the boreal forest, variation in these resources can originate from permafrost distribution and controls competition for nutrients between stream autotrophs and heterotrophs. We investigated which resources control nutrient uptake and metabolism in headwater stream biofilms of subarctic Alaska, USA, and how resource availability affects competition for inorganic nutrients. We hypothesized that the competitive outcome between autotrophs and heterotrophs for inorganic nutrients would be dependent on availability of organic C, or inorganic nutrients (N and P). To test our hypotheses, we measured resource limitation at the patch and reach scales along a permafrost gradient in interior Alaska. At the patch scale, nutrient diffusing substrata revealed that, secondary to light, N and P were colimiting to autotrophic growth, whereas C was primarily limiting to heterotrophic respiration. In the presence of labile C, heterotrophs exhibited a larger response to nutrient enrichment and outcompeted autotrophs for inorganic nutrients. At the reach scale, light availability had the largest influence on nutrient uptake, but inorganic nutrients were also important. The positive response to increased nutrient and C availability at the patch scale suggests that the predicted increase in exports into fluvial networks with permafrost degradation will alter biofilm structure and function. Ultimately, biofilm communities will shift to more heterotroph-dominated patches if heterotrophs outcompete autotrophs for inorganic nutrients. As permafrost thaws and nutrients and organic C mobilize into streams, nutrient uptake dynamics and competition within biofilms will be altered, affecting nutrient use and export. [ABSTRACT FROM AUTHOR]

A mathematical model with the intraguild predation structure is proposed to describe the interactions of autotrophs and mixotrophs containing light and nutrients in a well-mixed aquatic ecosystem. The dissipation, existence and stability of equilibria of the model are proved, and the ecological reproductive indexes for the extinction, survival and coexistence of autotrophs and mixotrophs are established. We also consider the influence of Holling type functional responses and abiotic factors on the coexistence and biomass of autotrophs and mixotrophs. It is shown that the intraguild predation structure is beneficial to phytoplankton biodiversity and provides an explanation for the phytoplankton paradox. [ABSTRACT FROM AUTHOR]

To avoid nitrate pollution in water bodies, two low-cost and abundant natural organic carbon sources were added to make up the solid-phase denitrification filters. This study compared four novel solid-phase carbon-sulfur-based composite filters, and their denitrification abilities were investigated in laboratory-scale bioreactors. The filter F4 (mixture of elemental sulfur powder, shell powder, and peanut hull powder with a mass ratio of 6:2.5:1.5) achieved the highest denitrification ability, with an optimal nitrate removal rate (NRR) of 723 ± 14.2 mg NO3−-N·L−1·d−1 when the hydraulic retention time (HRT) was 1 h. The HRT considerably impacted effluent quality after coupling of anaerobic ammonium oxidation (ANAMMOX) and solid-phase-based mixotrophic denitrification process (SMDP). The concentration of suspended solids (SS) of the ANAMMOX effluent may affect the performance of the coupled system. Autotrophs and heterotrophs were abundant and co-existed in all reactors; over time, the abundance of heterotrophs decreased while that of autotrophs increased. Overall, the SMDP process showed good denitrification performance and reduced the sulfate productivity in effluent compared to the sulfur-based autotrophic denitrification (SAD) process. [ABSTRACT FROM AUTHOR]

Steadily increasing R&D activities in the field of microbial polyhydroxyalkanoate (PHA) biopolyesters are committed to growing global threats from climate change, aggravating plastic pollution, and the shortage of fossil resources. These prevailing issues paved the way to launch the third Special Issue of Bioengineering dedicated to future-oriented biomaterials, characterized by their versatile plastic-like properties. Fifteen individual contributions to the Special Issue, written by renowned groups of researchers from all over the world, perfectly mirror the current research directions in the PHA sector: inexpensive feedstock like carbon-rich waste from agriculture, mitigation of CO2 for PHA biosynthesis by cyanobacteria or wild type and engineered "knallgas" bacteria, powerful extremophilic PHA production strains, novel tools for rapid in situ determination of PHA in photobioreactors, modelling of the dynamics of PHA production by mixed microbial cultures from inexpensive raw materials, enhanced bioreactor design for high-throughput PHA production by sophisticated cell retention systems, sustainable and efficient PHA recovery from biomass assisted by supercritical water, enhanced processing of PHA by application of novel antioxidant additives, and the development of compatible biopolymer blends. Moreover, elastomeric medium chain length PHA (mcl-PHA) are covered in-depth, inter alia, by introduction of a novel class of bioactive mcl-PHA-based networks, in addition to the first presentation of the new rubber-like polythioester poly(3-mercapto-2-methylpropionate). Finally, the present Special Issue is concluded by a critical essay on past, ongoing, and announced global endeavors for PHA commercialization. [ABSTRACT FROM AUTHOR]

In order to understand the behaviour of wastewater treatment plants with heavy metal presence, this study evaluates the treatment process in the presence of heavy metals (Cu2+ as a case study) and compares it with the absence of heavy metals. An activated sludge model is improved by means of incorporating other novel inhibitory kinetic and settler models for this evaluation. To achieve this goal, a simulation algorithm is developed using the MATLAB code to detect any heavy metal influence on the aerobic and anoxic growth of heterotrophic and autotrophic biomass. The code also allows for a comparison of treatment plant performance with and without Cu2+ in both conventional and alternating systems. The results reveal that the presence of heavy metals, in this study for Cu2+ at 0.5 mg/L, in a biological treatment system, has an inhibitory effect on the heterotrophic bacteria but more so on the autotrophic bacteria growth and it prevents nitrification and denitrification, thus having a negative effect on the nitrogen removal in the alternating systems. HIGHLIGHTS A simulation algorithm is developed using the MATLAB code.; The wasterwater treatment plants process is evaluated in the presence of Cu2+.; An ASM is improved by incorporation of inhibitory kinetic and settler models.; Heavy metal influence on heterotrophic and autotrophic biomass is assessed.; WWTP performance in conventional and alternating systems is determined.;

In tropical first‐order streams, the availability of basal resources changes according to tropical seasonality, i.e., dry and rainy seasons, with consequences for the food web structure. However, the seasonal variation in autotrophic and detrital pathways remains unclear. In this study, we aimed to establish whether the dominant pathway of the benthic macroinvertebrate food web in two tropical first‐order streams in the Lacandona rainforest, Mexico, relies on autotrophic or detrital food resources.We evaluated the assimilation of autotrophic and detrital food resources through carbon and nitrogen stable isotope (δ13C and δ15N) analysis. We included the biomass of the macroinvertebrates sustained by the autotrophic and detrital pathways and the food web structure—trophic position, size structure, and degree of omnivory.The biomass sustained by the detrital pathway remained similar throughout the year in both streams. In contrast, the biomass sustained by the autotrophic pathway was higher in the dry season than in the rainy season. The benthic macroinvertebrate food web had four levels, a poorly developed size structure, and an important degree of omnivory in both streams and in both seasons. It is likely that omnivory was a response to high resource variability and a strategy to reduce intraguild competition.Autotrophs had a relatively higher importance than detritus since a much lower algae biomass sustained an equal or higher macroinvertebrate biomass, particularly in the dry season when the biomass of autotrophs increased. Seasonality influenced the macroinvertebrate food web by modifying the food resource availability and transference to higher trophic levels. However, the high frequency of omnivory reduced the seasonal changes in the food web structure.Our results suggest that the autotrophic pathway plays an important role in maintaining the benthic macroinvertebrate food web in tropical streams. The relative importance of autotrophs in the macroinvertebrate food web is associated with seasonality, the rainfall pattern, and its effect on the stream hydrology. [ABSTRACT FROM AUTHOR]

Background: Cyanobacteria are photosynthetic autotrophs that have tremendous potential for fundamental research and industrial applications due to their high metabolic plasticity and ability to grow using CO2 and sunlight. CRISPR technology using Cas9 and Cpf1 has been applied to different cyanobacteria for genome manipulations and metabolic engineering. Despite significant advances with genome editing in several cyanobacteria strains, the lack of proper genetic toolboxes is still a limiting factor compared to other model laboratory species. Among the limitations, it is essential to have versatile plasmids that could ease the benchwork when using CRISPR technology. Results: In the present study, several CRISPR-Cpf1 vectors were developed for genetic manipulations in cyanobacteria using SEVA plasmids. SEVA collection is based on modular vectors that enable the exchangeability of diverse elements (e.g. origins of replication and antibiotic selection markers) and the combination with many cargo sequences for varied end-applications. Firstly, using SEVA vectors containing the broad host range RSF1010 origin we demonstrated that these vectors are replicative not only in model cyanobacteria but also in a new cyanobacterium specie, Chroococcidiopsis sp., which is different from those previously published. Then, we constructed SEVA vectors by harbouring CRISPR elements and showed that they can be easily assimilated not only by conjugation, but also by natural transformation. Finally, we used our SEVA-Cpf1 tools to delete the nblA gene in Synechocystis sp. PCC 6803, demonstrating that our plasmids can be applied for CRISPR-based genome editing technology. Conclusions: The results of this study provide new CRISPR-based vectors based on the SEVA (Standard European Vector Architecture) collection that can improve editing processes using the Cpf1 nuclease in cyanobacteria. [ABSTRACT FROM AUTHOR]

During a cruise from October to November 2019, along the West Antarctic Peninsula, between 64.32 and 68.37°S, we assessed the diversity and composition of the active microbial eukaryotic community within three size fractions: micro- (> 20 μm), nano- (20–5 μm), and pico-size fractions (5–0.2 μm). The communities and the environmental parameters displayed latitudinal gradients, and we observed a strong similarity in the microbial eukaryotic communities as well as the environmental parameters between the sub-surface and the deep chlorophyll maximum (DCM) depths. Chlorophyll concentrations were low, and the mixed layer was shallow for most of the 17 stations sampled. The richness of the microplankton was higher in Marguerite Bay (our southernmost stations), compared to more northern stations, while the diversity for the nano- and pico-plankton was relatively stable across latitude. The microplankton communities were dominated by autotrophs, mostly diatoms, while mixotrophs (phototrophs-consuming bacteria and kleptoplastidic ciliates, mostly alveolates, and cryptophytes) were the most abundant and active members of the nano- and picoplankton communities. While phototrophy was the dominant trophic mode, heterotrophy (mixotrophy, phagotrophy, and parasitism) tended to increase southward. The samples from Marguerite Bay showed a distinct community with a high diversity of nanoplankton predators, including spirotrich ciliates, and dinoflagellates, while cryptophytes were observed elsewhere. Some lineages were significantly related—either positively or negatively—to ice coverage (e.g., positive for Pelagophyceae, negative for Spirotrichea) and temperature (e.g., positive for Cryptophyceae, negative for Spirotrichea). This suggests that climate changes will have a strong impact on the microbial eukaryotic community. [ABSTRACT FROM AUTHOR]

Carbon isotope fingerprinting, or multivariate analysis using δ13C values of individual compounds, is a powerful tool in ecological studies, particularly measurements of essential amino acids (EAA δ13C). Despite the widespread application of this technique, there has been little methodological validation to determine (a) whether multivariate EAA δ13C signatures (fingerprints) of primary producer groups vary across space and time and (b) what biochemical mechanisms drive these patterns.Here, we evaluate the spatiotemporal consistency in EAA δ13C fingerprints among nearshore primary producers: Chlorophyta (Ulva sp.), Ochrophyta (kelps), particulate organic matter (POM) and phytoplankton, and Rhodophyta. We analysed 135 samples from 14 genera collected in Alaska, California and Chile. The collections included historical museum samples (1896–1980 CE) of the giant kelp, Macrocystis pyrifera. We employed canonical analysis of principal coordinates and generalized linear models (GLMs) to, respectively, characterize isotopic fingerprints and evaluate the effect of taxonomy, local upwelling regimes, ecological setting, and time on individual EAA δ13C values and associated fingerprints. We also calculated amino acid discrimination values (∆13C) to identify key biochemical pathways responsible for these patterns.We found remarkable consistency in EAA δ13C fingerprints of marine algae across space and through time. Kelps and rhodophytes exhibited statistically distinct multivariate isotopic patterns regardless of geographical location, species identity or time (kelps). In contrast, isotopic fingerprints of POM/phytoplankton and Ulva overlapped substantially. GLMs indicated that producer family, presumably due to the presence/absence of carbon concentrating mechanisms, and site locality are important determinants of individual amino acid δ13C values. Taxonomy was also a key variable for EAA δ13C fingerprints. The calculated discrimination values suggest variation in (a) metabolism of pyruvate and oxaloacetate‐derived amino acids and (b) production of storage and structural carbohydrates are responsible for taxonomic differences in isotopic fingerprints.We conclude EAA δ13C fingerprinting is a robust method for tracing the contribution of diverse primary producer taxa to coastal food webs. We show that this technique can be applied to modern and historical samples, as well as consumers collected across continental scales. The high fidelity of EAA δ13C multivariate patterns coupled with biochemical mechanisms provides a powerful framework for future studies of carbon flow across broad biogeographical and ecological contexts. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

Autotrophs play an essential role in the cycling of carbon and nutrients, yet disease‐ecosystem relationships are often overlooked in these dynamics. Importantly, the availability of elemental nutrients like nitrogen and phosphorus impacts infectious disease in autotrophs, and disease can induce reciprocal effects on ecosystem nutrient dynamics. Relationships linking infectious disease with ecosystem nutrient dynamics are bidirectional, though the interdependence of these processes has received little attention. We introduce disease‐mediated nutrient dynamics (DND) as a framework to describe the multiple, concurrent pathways linking elemental cycles with infectious disease. We illustrate the impact of disease–ecosystem feedback loops on both disease and ecosystem nutrient dynamics using a simple mathematical model, combining approaches from classical ecological (logistic and Droop growth) and epidemiological (susceptible and infected compartments) theory. Our model incorporates the effects of nutrient availability on the growth rates of susceptible and infected autotroph hosts and tracks the return of nutrients to the environment following host death. While focused on autotroph hosts here, the DND framework is generalizable to higher trophic levels. Our results illustrate the surprisingly complex dynamics of host populations, infection patterns, and ecosystem nutrient cycling that can arise from even a relatively simple feedback between disease and nutrients. Feedback loops in disease‐mediated nutrient dynamics arise via effects of infection and nutrient supply on host stoichiometry and population size. Our model illustrates how host growth rate, defense, and tissue chemistry can impact the dynamics of disease–ecosystem relationships. We use the model to motivate a review of empirical examples from autotroph–pathogen systems in aquatic and terrestrial environments, demonstrating the key role of nutrient–disease and disease–nutrient relationships in real systems. By assessing existing evidence and uncovering data gaps and apparent mismatches between model predictions and the dynamics of empirical systems, we highlight priorities for future research intended to narrow the persistent disciplinary gap between disease and ecosystem ecology. Future empirical and theoretical work explicitly examining the dynamic linkages between disease and ecosystem ecology will inform fundamental understanding for each discipline and will better position the field of ecology to predict the dynamics of disease and elemental cycles in the context of global change. [ABSTRACT FROM AUTHOR]

Some microorganisms with the nitrification function can carry out nitrogen conversion under oxygen-limited conditions. In this study, a continuous-flow biofilm reactor was operated to investigate the removal of ammonium nitrogen (NH4-N) under microaerobic or anoxic conditions. After more than 100 days of long-term operation, the NH4-N removal rate and removal percentage reached 2.92 mg/(L·h) and 72.3%, respectively. In the batch experiments, NH4-N removal was achieved regardless of the presence or absence of nitrite. The main microorganisms relating to nitrogen metabolism in the system were Nitrospira, Nitrosomonas, Candidatus Kuenenia, and denitrifying bacteria. The metagenomics analysis indicated that these functional microorganisms constituted the main nitrogen metabolic network in the system, and microorganisms such as Rhodanobacter, Nitrosomonas, Defluvii, and Cyanobacteria had the possible capacity for oxygen production. Without organic carbon in the synthetic wastewater, heterotrophs including denitrifying bacteria might utilize organic carbon such as extracellular polymeric substances produced by autotrophs. The removal of NH4-N under oxygen-limited conditions might be achieved through interactions among nitrifying bacteria, anammox bacteria, and heterotrophs, which deserves further investigation. [ABSTRACT FROM AUTHOR]

Carbon allocation in vegetation is an important process in the terrestrial carbon cycle; it determines the fate of photo-assimilates and it has an impact on the time carbon spends in the terrestrial biosphere. Although previous studies have highlighted important conceptual issues in the definition and metrics used to assess carbon allocation, very little emphasis has been placed on the distinction between allocation of carbon from gross primary production (GPP) versus allocation from net primary production (NPP). An important number of simulation models and conceptual frameworks are based on the concept that C is allocated from NPP, which implies that C is respired immediately after photosynthetic assimilation. However, empirical work that estimates the age of respired CO2 from vegetation tissue (foliage, stems, roots) shows that it may take from years to decades to respire previously produced photosynthates. The transit time distribution of carbon in vegetation and ecosystems, a metric that provides an estimate of the age of respired carbon, indicates that vegetation pools respire carbon of a wide range of ages, on timescales that are in conflict with the assumption that autotrophic respiration only consumes recently fixed carbon. In this contribution, we attempt to provide compelling evidence based on recent research on the age of respired carbon and the theory of timescales of carbon in ecosystems, with the aim to promote a change in the predominant paradigm implemented in ecosystem models where carbon allocation is based on NPP. In addition, we highlight some implications for understanding and modeling carbon dynamics in terrestrial ecosystems. [ABSTRACT FROM AUTHOR]

Mixotrophic dinoflagellates (MTD) are a diverse group of organisms often responsible for the formation of harmful algal blooms. However, the development of dinoflagellate blooms and their effects on the plankton community are still not well explored. Here we relate the species succession of MTD with parallel changes of phytoplankton size spectra during periods of MTD dominance. We used FlowCAM analysis to acquire size spectra in the range 2–200 μm every one or two weeks from July to December 2007 at Helgoland Roads (Southern North Sea). Most size spectra of dinoflagellates were bimodal, whereas for other groups, e.g. diatoms and autotrophic flagellates, the spectra were unimodal, which indicates different resource use strategies of autotrophs and mixotrophs. The biomass lost in the size spectrum correlates with the potential grazing pressure of MTD. Based on size-based analysis of trophic linkages, we suggest that mixotrophy, including detritivory, drives species succession and facilitates the formation of bimodal size spectra. Bimodality in particular indicates niche differentiation through grazing of large MTD on smaller MTD. Phagotrophy of larger MTD may exceed one of the smaller MTD since larger prey was more abundant than smaller prey. Under strong light limitation, a usually overlooked refuge strategy may derive from detritivory. The critical role of trophic links of MTD as a central component of the plankton community may guide future observational and theoretical research. [ABSTRACT FROM AUTHOR]

Since their first occurrence in the late Cretaceous, seagrasses have played a major role in carbonate production and sedimentation across shallow‐water and nearshore environments, sustaining a prolific carbonate factory and contributing to sediment accumulation through the combination of baffling and trapping effects. Most reported Palaeogene seagrass occurrences developed in oligo−mesotrophic shallow warm‐water habitats and are characterized by distinct associations of small and larger benthic foraminifers adapted to low terrigenous influence. This study describes a number of seagrass episodes interbedded in the Bartonian (middle Eocene) of San Fausto–Lazkua area (Navarra region, North Spain), within a nearshore to inner‐ramp succession that, in spite of being deposited under general transgressive conditions, was highly influenced by terrigenous supply from the adjacent land. Up to twelve different seagrass bed intervals occur interbedded in a cyclical manner with high‐energy nearshore siliciclastics and inner ramp bioclastic carbonates rich in mesophotic−oligophotic foraminifers and heterozoan biota (red algae, echinoderms, bryozoans). Seagrass deposits exhibit typical unsorted textures, abundant bioturbation and moderate to high terrigenous content, and comprise a characteristic skeletal association of epiphytic foraminifers, red algae and, most particularly, of abundant encrusting acervulinids, commonly with distinct hooked and tubular growth forms. This abundance of suspension‐feeders relative to autotrophs and mixotrophs may be indicative of temperate waters, although the taxonomic diversity of the foraminiferal assemblages in both seagrass and non‐seagrass embedding deposits supports the interpretation of shallow, warm‐water conditions. The studied seagrass deposits provide evidence that high siliciclastic supply and associated nutrient input may determine the occurrence of temperate‐like seagrass deposits in warm‐water settings, analogous to extensive heterozoan carbonate production in modern shallow‐tropical environments. Thus, the identification and correct interpretation of past seagrass‐vegetated environments are crucial for reconstructing palaeoecological conditions in ancient shallow‐marine environments. Therefore, in comparison with carbonate‐dominated environments, the mixed terrigenous−carbonate seagrass deposits are volumetrically less important, presenting a more irregular, patchy distribution, and a skeletal assemblage dominated by heterotrophs, regardless of the water temperature. [ABSTRACT FROM AUTHOR]

This review provides a revised and expanded word-formula system of whole-seed primary dormancy classification that integrates the scheme of Nikolaeva with that of Baskin and Baskin. Notable changes include the following. (1) The number of named tiers (layers) in the classification hierarchy is increased from three to seven. (2) Formulae are provided for the known kinds of dormancy. (3) Seven subclasses of class morphological dormancy are designated: 'dust seeds' of mycoheterotrophs, holoparasites and autotrophs; diaspores of palms; and seeds with cryptogeal germination are new to the system. (4) Level non-deep physiological dormancy (PD) has been divided into two sublevels, each containing three types, and Type 6 is new to the system. (5) Subclass epicotyl PD with two levels, each with three types, has been added to class PD. (6) Level deep (regular) PD is divided into two types. (7) The simple and complex levels of class morphophysiological dormancy (MPD) have been expanded to 12 subclasses, 24 levels and 16 types. (8) Level non-deep simple epicotyl MPD with four types is added to the system. (9) Level deep simple regular epicotyl MPD is divided into four types. (10) Level deep simple double MPD is divided into two types. (11) Seeds with a water-impermeable seed coat in which the embryo-haustorium grows after germination (Canna) has been added to the class combinational dormancy. The hierarchical division of primary seed dormancy into many distinct categories highlights its great diversity and complexity at the whole-seed level, which can be expressed most accurately by dormancy formulae. [ABSTRACT FROM AUTHOR]

Due to their lithotrophic metabolisms, morphological complexity and conspicuous appearance, members of the Beggiatoaceae have been extensively studied for more than 100 years. These bacteria are known to be primarily sulfur-oxidizing autotrophs that commonly occur in dense mats at redox interfaces. Their large size and the presence of a mucous sheath allows these cells to serve as sites of attachment for communities of other microorganisms. But little is known about their individual niche preferences and attached microbiomes, particularly in marine environments, due to a paucity of cultivars and their prevalence in habitats that are difficult to access and study. Therefore, in this study, we compare Beggiatoaceae strain composition, community composition, and geochemical profiles collected from sulfidic sediments at four marine stations off the coast of Namibia. To elucidate community members that were directly attached and enriched in both filamentous Beggiatoaceae, namely Ca. Marithioploca spp. and Ca. Maribeggiatoa spp., as well as non-filamentous Beggiatoaceae, Ca. Thiomargarita spp., the Beggiatoaceae were pooled by morphotype for community analysis. The Beggiatoaceae samples collected from a highly sulfidic site were enriched in strains of sulfur-oxidizing Campylobacterota, that may promote a more hospitable setting for the Beggiatoaceae, which are known to have a lower tolerance for high sulfide to oxygen ratios. We found just a few host-specific associations with the motile filamentous morphotypes. Conversely, we detected 123 host specific enrichments with non-motile chain forming Beggiatoaceae. Potential metabolisms of the enriched strains include fermentation of host sheath material, syntrophic exchange of H2 and acetate, inorganic sulfur metabolism, and nitrite oxidation. Surprisingly, we did not detect any enrichments of anaerobic ammonium oxidizing bacteria as previously suggested and postulate that less well-studied anaerobic ammonium oxidation pathways may be occurring instead. [ABSTRACT FROM AUTHOR]

Mixotrophy (MX, also called partial mycoheterotrophy) in plants is characterized by isotopic abundances that differ from those of autotrophs. Previous studies have evaluated mycoheterotrophy in MX plants associated with fungi of similar ecological characteristics, but little is known about the differences in the relative abundances of 13C and 15N in an orchid species that associates with several different mycobionts species. Since the chlorophyllous orchid Cremastra variabilis Nakai associates with various fungi with different ecologies, we hypothesized that it may change its relative abundances of 13C and 15N depending on the associated mycobionts. We investigated mycobiont diversity in the chlorophyllous orchid C. variabilis together with the relative abundance of 13C and 15N and morphological underground differentiation (presence or absence of a mycorhizome with fungal colonization). Rhizoctonias (Tulasnellaceae, Ceratobasidiaceae, Sebacinales) were detected as the main mycobionts. High differences in δ13C values (– 34.7 to – 27.4 ‰) among individuals were found, in which the individuals associated with specific Psathyrellaceae showed significantly high relative abundance of 13C. In addition, Psathyrellaceae fungi were always detected on individuals with mycorhizomes. In the present study, MX orchid association with non-rhizoctonia saprobic fungi was confirmed, and the influence of mycobionts on morphological development and on relative abundance of 13C and 15N was discovered. Cremastra variabilis may increase opportunities to gain nutrients from diverse partners, in a bet-hedging plasticity that allows colonization of various environmental conditions. [ABSTRACT FROM AUTHOR]

The ecosystem services provided by forests are under threat as wildfire frequency and severity increase throughout the western US. Severe wildfire can change physical environments and biogeochemical processes in watersheds with lasting effects on watershed nutrient cycling. For example, nitrate‐nitrogen (NO3‐N) export often increases following wildfire and can remain elevated for decades in severely burned watersheds. In this study, we investigated the effects of wildfire on stream biotic processing and watershed nutrient balance following two wildfires that burned along the Colorado Front Range. We evaluated stream water chemistry, nutrient limitation, benthic biomass, and stream metabolism along stream reaches within three burned and three unburned watersheds from July 26 to August 16, 2017. Although the two high‐severity wildfires occurred 5 and 15 years prior to the study, the streams draining burned watersheds still had 23‐times higher NO3‐N concentrations than unburned watersheds, a trend that is consistent across seasons and throughout the 15‐year post‐fire record. Autotrophic nitrogen (N) limitation was reduced in the nitrate‐rich burned streams. Consequently, autotrophic biomass and primary productivity were 2.5 and 20‐times greater, respectively, in burned relative to unburned streams. Together, these data suggest that N supply from burned uplands exceeded the increase in stream N demand and was the primary cause of chronic, elevated NO3‐N export from these severely burned watersheds. Accordingly, aquatic ecosystems within or downstream of burned watersheds may be susceptible to eutrophication and harmful algal blooms until vegetation recovery and plant nutrient demand reduce N supply to streams. Plain Language Summary: Increasing wildfire severity and frequency can alter aquatic ecosystems. Severe wildfire kills vegetation which reduces plant nitrogen demand and increases nitrogen transport from soils to streams. This is a concern for clean drinking water as excess nitrogen can cause harmful algal blooms and complicate water treatment. This research focused on nitrate, a dissolved form of nitrogen that is transported with subsurface water from hillslopes to streams. Stream nitrate concentrations often increase after wildfire and can remain high for decades. To better understand what processes may contribute to elevated post‐fire nitrate, we compared the amount and activity of algae and bacteria living in streams within burned and unburned watersheds. Burned streams had 2.5‐times more algae and those algae were 20‐times more productive than in the unburned streams. Although the higher algal growth in burned streams would consume substantial nitrogen, stream nitrate was 23‐times higher in burned relative to unburned streams. This suggests that nitrate supply from burned hillslopes exceeded the demands of stream biota in post‐fire landscapes. Our findings suggest that stream biota may partially reduce post‐fire stream nitrate concentrations, while also highlighting the importance of terrestrial vegetation recovery in mitigating post‐fire changes in water chemistry. Key Points: Elevated stream nitrate concentrations reduce nitrogen‐limitation of autotrophic biofilms in burned watershedsBurned streams have greater benthic autotrophic biomass, primary productivity, and autotrophic nitrogen demand relative to unburned streamsTerrestrial nitrate supply to burned streams exceeds in‐stream demand and results in elevated watershed export 5 and 15 years after fire [ABSTRACT FROM AUTHOR]

Nitrogen (N) uptake is a key process in stream ecosystems that is mediated mainly by benthic microorganisms (biofilms on different substrata) and has implications for the biogeochemical fluxes at catchment scale and beyond. Here, we focused on the drivers of assimilatory N uptake, especially the effects of hydromorphology and other environmental constraints, across three spatial scales: micro, meso and reach. In two seasons (summer and spring), we performed whole-reach 15N-labelled ammonium injection experiments in two montane, gravel-bed stream reaches with riffle–pool sequences. N uptake was highest in epilithic biofilms, thallophytes and roots (min–max range 0.2–545.2 mg N m−2 day−1) and lowest in leaves, wood and fine benthic organic matter (0.05–209.2 mg N m−2 day−1). At the microscale, N uptake of all primary uptake compartments except wood was higher in riffles than in pools. At the mesoscale, hydromorphology determined the distribution of primary uptake compartments, with fast-flowing riffles being dominated by biologically more active compartments and pools being dominated by biologically less active compartments. Despite a lower biomass of primary uptake compartments, mesoscale N uptake was 1.7–3.0 times higher in riffles than in pools. At reach scale, N uptake ranged from 79.6 to 334.1 mg N m−2 day−1. Highest reach-scale N uptake was caused by a bloom of thallopyhtes, mainly filamentous autotrophs, during stable low discharge and high light conditions. Our results reveal the important role of hydromorphologic sorting of primary uptake compartments at mesoscale as a controlling factor for reach-scale N uptake in streams. [ABSTRACT FROM AUTHOR]

We investigated the epibiotic community along Cymodocea nodosa leaves in a seagrass meadow in the Northern Adriatic Sea. In accordance with previous studies, we found that autotrophic organisms dominated throughout the study period (May–October 2014) and showed a clear temporal occurrence pattern with highest occurrence frequencies during summertime. Low relative occurrence of autotrophs was observed in spring, coinciding with higher values for sessile heterotrophs. In both autotrophs and heterotrophs, we observed a general trend towards increased epibiota cover on old leaves and towards the apical (i.e. older) parts of leaves, even though this pattern does not hold true for all species or sampling times. Most heterotrophs were rarely observed, but serpulid polychaetes, the foraminiferan Tretomphaloides concinnus, the hydrozoan Clytia linearis as well as gastropod clutches occurred frequently on all parts of the leaves and showed occurrence patterns putatively reflecting spatial competition with autotrophs and predator avoidance. Hitherto, few data have been available on the epifaunal diversity and community structure on C. nodosa. Thus, this study provides important baseline data for future studies investigating the impact of natural and anthropogenic stressors on epibiota communities associated with this ecologically important Mediterranean seagrass species. [ABSTRACT FROM AUTHOR]

In an aquatic ecosystem, understanding food chain or food web is very important to understand the production and productivity. Phytoplankton are autotrophs and primary producers and make the basis for all energy production in the entire food web. In this research, the influence of manures on rate of production of phytoplankton is studied. Four commonly used manures like poultry manure (PM), cowdung (CD) and combination of cow dung with poultry manure (PM+CD) and control (no manure) were compared. It was also correlated with the physicochemical parameters. The dominant phytoplankton species in all the treatments were Pediastrum, Chlorella, Eudorina, Closterium, Anabena and Microcysits etc. Poultry manure stimulated the highest plankton production followed by combination of poultry and cowdung while the least was with cowdung and control (no manure). The mean values for temperature were 27.4°C for PM, 27.1°C for CD and 27.3°C for the CD+PM. pH was 8.0 in CD treatment, 8.38 in PM treatment, 8.16 in CD+PM. Dissolved oxygen was 6.0 mg/l throughout the culture systems. Ammonia recorded 1.31 mg/l for poultry manure, 0.5 mg/l for cowdung and 0.74 mg/l was recorded in cowdung + poultry manure. T3 (CD+PM) produced the highest number of phytoplankton 986/ml in the third week and the level was maintained higher than other two treatments during the experiment period where the high plankton number in T1 was 852 No./ml in 4th week and in T2, the highest was 820 No./ml, which was noticed in 6th week. The nitrate and phosphates level was high in T2 271.69 mg/l in poultry manure, in cowdung it was 63.63 mg/l and 135.62 mg/l in cowdung + poultry manure. This moderate level of N and P induced high average plankton in T3 (4.92 ml/100 L), followed by T1 (4.22 ml/100 L) and T2 (3.83 ml/100 L). There was a mixed result in this experiment. It is discussed in detail in the conclusion with a comparison among survival per cent, growth rate and economics. ANOVA results showed significant differences (P<0.05) in phytoplankton production between Poultry manure, cowdung and cowdung + poultry manure. [ABSTRACT FROM AUTHOR]

Steadily increasing R&D activities in the field of microbial polyhydroxyalkanoate (PHA) biopolyesters are committed to growing global threats from climate change, aggravating plastic pollution, and the shortage of fossil resources. These prevailing issues paved the way to launch the third Special Issue of Bioengineering dedicated to future-oriented biomaterials, characterized by their versatile plastic-like properties. Fifteen individual contributions to the Special Issue, written by renowned groups of researchers from all over the world, perfectly mirror the current research directions in the PHA sector: inexpensive feedstock like carbon-rich waste from agriculture, mitigation of CO2 for PHA biosynthesis by cyanobacteria or wild type and engineered “knallgas” bacteria, powerful extremophilic PHA production strains, novel tools for rapid in situ determination of PHA in photobioreactors, modelling of the dynamics of PHA production by mixed microbial cultures from inexpensive raw materials, enhanced bioreactor design for high-throughput PHA production by sophisticated cell retention systems, sustainable and efficient PHA recovery from biomass assisted by supercritical water, enhanced processing of PHA by application of novel antioxidant additives, and the development of compatible biopolymer blends. Moreover, elastomeric medium chain length PHA (mcl-PHA) are covered in-depth, inter alia, by introduction of a novel class of bioactive mcl-PHA-based networks, in addition to the first presentation of the new rubber-like polythioester poly(3-mercapto-2-methylpropionate). Finally, the present Special Issue is concluded by a critical essay on past, ongoing, and announced global endeavors for PHA commercialization.

To elucidate the trophic link between classical and microbial food webs in the coastal ecosystem of Matsu Island during the warmer (27.5°C) and colder (16°C) months, we estimated the impact of mesozooplankton and microzooplankton grazing on > 20 µm and < 20 µm phytoplankton groups, respectively. In the warmer months, the > 20 µm fraction of Chl a accounted for more than 70% of the total Chl a; however, the Chl a > 20 µm fraction contributed little to the total phytoplankton biomass, at about 16%, in the colder months. Overall, the < 20 µm fraction represented 26 and 90% of the < 200 µm daily primary production in the warmer and colder months, respectively. Furthermore, the grazing loss of mesozooplankton on microzooplankton was 4.7 mgC m-3 d-1 in the warmer months; however, no significant loss rate was measured in the colder months. The results showed that large autotrophs (> 20 µm) were available for direct mesozooplankton ingestion, which indicated that they could be considered as an important link in the complex food web structures, particularly during the warmer season. [ABSTRACT FROM AUTHOR]