1. A distinct immune landscape in anti-synthetase syndrome profiled by a single-cell genomic study.
- Author
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Ding, Jiayu, Li, Yanmei, Wang, Zhiqin, Han, Feng, Chen, Ming, Du, Jun, Yang, Tong, Zhang, Mei, Wang, Yingai, Xu, Jing, Wang, Gaoya, Xu, Yong, Wu, Xiuhua, Hao, Jian, Liu, Xinlei, Zhang, Guangxin, Zhang, Na, Sun, Wenwen, Cai, Zhigang, and Wei, Wei
- Subjects
MONONUCLEAR leukocytes ,RNA sequencing ,OXIDATIVE phosphorylation ,FLOW cytometry ,CELL communication - Abstract
Objectives: The objective of this study was to profile the transcriptional profiles of peripheral blood mononuclear cells (PBMCs) and their immune repertoires affected by anti-synthetase syndrome (ASS) at the single-cell level. Methods: We performed single-cell RNA sequencing (scRNA-seq) analysis of PBMCs and bulk RNA sequencing for patients with ASS (N=3) and patients with anti-melanoma differentiation-associated gene 5-positive dermatomyositis (MDA5
+ DM, N=3) along with healthy controls (HCs, N=4). As ASS and MDA5+ DM have similar organ involvements, MDA5+ DM was used as a disease control. The immune repertoire was constructed by reusing the same scRNA-seq datasets. Importantly, flow cytometry was performed to verify the results from the scRNA-seq analysis. Results: After meticulous annotation of PBMCs, we noticed a significant decrease in the proportion of mucosal-associated invariant T (MAIT) cells in ASS patients compared to HCs, while there was a notable increase in the proportion of proliferative NKT cells. Compared with MDA5+ DM patients, in their PBMCs ASS patients presented substantial enrichment of interferon pathways, which were primarily mediated by IFN-II, and displayed a weak immune response. Furthermore, ASS patients exhibited more pronounced metabolic abnormalities, which may in turn affect oxidative phosphorylation pathways. Monocytes from ASS patients appear to play a crucial role as receptive signaling cells for the TNF pathway. Immunophenotyping analysis of PBMCs from ASS patients revealed an increasing trend for the clone type CQQSYSTPWTF. Conclusion: Using single-cell genomic datasets of ASS PBMCs, we revealed a distinctive profile in the immune system of individuals with ASS, compared to that with MDA5+ DM or healthy controls. [ABSTRACT FROM AUTHOR]- Published
- 2024
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