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This study aimed at discriminating between the effects of physical strain due to the interactive effect of gear operation and degradation, and degradation only, on the differences in breaking strength, strain, and stiffness at break of polybutylene succinate-co-adipate-co-terephthalate (PBSAT) (biodegradable) and PA6 (nylon) gillnet materials, and to compare the effect of fish species and resulting capture mode on catch efficiency for a roundfish species, Atlantic cod (Gadus morhua), and a flatfish species, European plaice (Pleuronectes platessa) in the Danish coastal gillnet fishery. The PBSAT meshes were much weaker than PA6 already at the start of the experiment. There were 58% (95% Confidence Interval (CI): 38%–79%) less cod and 32% (CI: 17%–49%) less plaice after 4 months in the PBSAT gillnets. We did not observe significant differences between the interactive effect of gear operation and degradation, and degradation only, and in capture modes. We conclude that reduction in catch efficiency results from a combination of weaker mechanical properties worsened by degradation during, e.g., transport and storage, and a species given shape and swimming ability. [ABSTRACT FROM AUTHOR]

Fish behavior is important to consider when developing selective fishing gear. In studies designed to investigate the size selective properties of towed fishing gears such as trawls, fish behavior is mainly documented by underwater video recordings. Because fishing gear can be operated at great depths or in other low light environments, artificial light is often required for underwater recordings. However, artificial light can influence fish behavior, which casts doubt on the validity of behavioral observations obtained in the presence of artificial light. However, removing artificial light disables video recordings and the possibility to study fish behavior in relation to selectivity devices towed fishing gears in low light environments. To date, little is known about the extent to which artificial light used for video observations affects fish behavior with respect to fishing gear. Therefore, we conducted fishing trials in the Barents Sea demersal trawl fishery to assess the effect of light sources on fish behavior by using size selectivity results in towed fishing gears. We found that the behavior of cod (Gadus morhua) was unaffected by the light sources, whereas the behavior of haddock (Melanogrammus aeglefinus), saithe (Pollachius virens) and redfish (Sebastes spp.) significantly changed when red light and white light were employed. Our results also demonstrated significant differences in fish behavior between white and red light. [ABSTRACT FROM AUTHOR]

Alcohol dehydrogenases (ADHs) are critical enzymes involved in the oxidation of alcohols, contributing to various metabolic pathways across organisms. This study investigates type I functional divergence within three ADH1 families: Saccharomyces cerevisiae (PDB ID: 4W6Z), Gadus morhua (PDB ID: 1CDO), and Homo sapiens (PDB ID: 1HDX). Understanding the molecular evolution and mechanisms underlying functional divergence of ADHs is essential for comprehending their adaptive significance. For this purpose, we performed a computational analysis that included structural characterization of ADHs through three-dimensional modeling, site-specific analysis to evaluate selective pressures and evolutionary constraints, and network analysis to elucidate relationships between structural features and functional divergence. Our findings indicate substantial variations in evolutionary and structural adaptations among the ADH families. [ABSTRACT FROM AUTHOR]

The contents and distribution of different collagen types in bones, skins, and guts of salmon and cod were assessed by chemical and mass spectroscopic methods. The highest levels of collagen were found in the skin (89–98%), followed by the bones (79–89%), and the guts (25–36%). A variety of different collagen α-chain proteins were detected in the assessed tissues, with proteins from 12 to 6 different collagen types quantified in salmon and cod, respectively. The less well-known collagen IV was found in significant levels in all tissues, and the most diverse collagen composition was found in the bones. [ABSTRACT FROM AUTHOR]

The Gilbert Bay marine protected area (MPA) was established in Labrador, Canada to protect a resident population of Atlantic cod (Gadus morhua) and associated habitat. However, fisheries removals outside MPA boundaries have contributed to population decline and increases in potentially competing species may hinder recovery. Using acoustic telemetry and network analyses, we compared movements of Gilbert Bay cod (n = 23), conspecifics from offshore environments (offshore Atlantic cod, n = 19), and Greenland cod (Gadus ogac, n = 14) within and outside MPA boundaries from August 2014 to June 2017. Similar summer space use resulted in species overlap at seaward MPA boundaries and outside the MPA. In winter, Gilbert Bay cod and Greenland cod distributions overlapped within some MPA areas, and offshore Atlantic cod were absent. Some Gilbert Bay cod remained within the MPA year-round. Summer vulnerability to fisheries harvest outside MPA boundaries and winter overlap with competing Greenland cod within the MPA, may collectively challenge Gilbert Bay cod population recovery. Our study demonstrates the utility of acoustic telemetry and network analyses in evaluating animal movements for MPA management. [ABSTRACT FROM AUTHOR]

The Northeast Arctic stock of haddock (Melanogrammus aeglefinus) is the most northerly stock of the species. It is one of the largest haddock stocks but not the most studied. Similar to the more extensively studied sympatric cod (Gadus morhua) and herring (Clupea harengus) stocks, it relies on Atlantic currents for egg and larvae transportation from spawning grounds to nursery areas in the Barents Sea. The exact locations of the spawning grounds have not been known and the maps that have been published differ substantially. Here, we present results from the first survey dedicated to exploring the spawning habitat of Northeast Arctic (NEA) haddock, and a particle drift and larvae growth model with physical forcing from a high‐resolution ocean model. Gadoid eggs, later identified as haddock by DNA analyses, as well as spawning individuals were sampled at the survey. Spawning haddock was found in Atlantic water in temperatures 3.6–6.2°C and depths of 240–560 m. Sampled eggs were mostly in early development stages, suggesting that they were largely spawned in the surveyed area. Using the drift model, we found that most of the modelled particles released as eggs at our surveyed area ended up in the nursery area in the Barents Sea. A crude estimate of the spawning stock biomass based on the survey suggests that the most updated spawning ground map of NEA haddock might be too restricted in its extent. Particle drift and growth with physical forcing for the years 2012–2022 indicated small interannual variation in aberrant drift, and that growth driven by ambient temperature could be important in explaining interannual variation in haddock recruitment. [ABSTRACT FROM AUTHOR]

Animals form functional units with their microbial communities, termed metaorganisms. Despite extensive research on some model animals, microbial diversity in many species remains unexplored. Here, we describe the taxonomic profile of the microbes from the outer gut mucus layer from the Northeast Arctic cod using a shotgun DNA sequencing approach. We focused on the mucus to determine if its microbial composition differs from that of the fecal microbiota, which could reveal unique microbial interactions and functions. Metagenomes from six individuals were analyzed, revealing three different taxonomic profiles: Type I is dominated in numbers by Pseudomonadaceae (44%) and Xanthomonadaceae (13%), Type II by Vibrionaceae (65%), and Type III by Enterobacteriaceae (76%). This stands in sharp contrast to the bacterial diversity of the transient gut content (i.e., feces). Additionally, binning of assembled reads followed by phylogenomic analyses place a high-completeness bin of Type I within the Pseudomonas fluorescens group, Type II within the Photobacterium phosphoreum clade, and Type III within the Escherichia/Shigella group. In conclusion, we describe the adherent bacterial diversity in the Northeast Arctic cod's intestine using shotgun sequencing, revealing different taxonomic profiles compared to the more homogenous transient microbiota. This suggests that the intestine contains two separate and distinct microbial populations. [ABSTRACT FROM AUTHOR]

The survival of animals is impacted by landscapes of spatially varying mortality factors including habitat type, predation risk or harvest risk, among others. Characterization of these spatial mortality processes is important for managing animal populations and their habitats, yet this information has proved challenging to capture. Advances in telemetry now make it possible to monitor tagged individuals' locations through time for a wide range of taxa, providing opportunity to assess movement and mortality simultaneously through spatial time‐to‐event data. Existing time‐to‐event modelling frameworks have largely ignored spatially varying mortality processes or have treated an animal's location as fixed at a regional level.Here we present a general spatial survival model for analysing time‐to‐event data arising from animal telemetry. Our model has a flexible Cox regression form and can estimate the effects of conventional non‐spatial risk factors (size, seasonality, etc.), spatial covariates (e.g. habitat type) and spatial variation in risk not explained by covariates on mortality. We show how to fit our model using Bayesian methods and demonstrate applications of our model with several simulated examples and two animal telemetry case studies.Our model produced consistent and unbiased parameter estimates throughout simulations with a variety of spatial and non‐spatial hazards. In the first case study, data from 147 tagged caribou in British Columbia, Canada, revealed a spatially heterogeneous mortality landscape with caribou survival varying by elevation, likely in response to space use by predators. Our second case study involved a dataset of 390 acoustically tagged Atlantic cod in a southern Norwegian fjord where a marine protected area (MPA) was established during the study. We found that the MPA led to a shift from mostly fishing mortality to mostly natural mortality within the fjord and that these risks had markedly different spatial hazard patterns.Our spatial time‐to‐event model can make use of data from a variety of widely used telemetry technologies to characterize landscapes of mortality risks for different taxa. Our work provides new opportunities to inform the spatial ecology and management of fish and wildlife populations. [ABSTRACT FROM AUTHOR]

Sensing limitations have impeded knowledge about how individual predator-prey interactions build to organized multi-species group behaviour across an ecosystem. Population densities of overlapping interacting oceanic fish predator and prey species, however, can be instantaneously distinguished and quantified from roughly the elemental individual to spatial scales spanning thousands of square kilometres by wide-area multispectral underwater-acoustic sensing, as shown here. This enables fundamental mechanisms behind large-scale ordered predator-prey interactions to be investigated. Critical population densities that transition random individual behaviour to ordered group behaviour are found to rapidly propagate to form vast adversarial prey and predator shoals of capelin and surrounding cod in the Barents Sea Arctic ecosystem for these keystone species. This leads to a sudden major shift in predator-prey balance. Only a small change in local behaviour triggers the shift due to an unstable equilibrium. Such unstable equilibria and associated balance shifts at predation hotspots are often overlooked as blind spots in present ocean ecosystem monitoring and assessment due to use of highly undersampled spatio-temporal sampling methods. This study utilises OAWRS to demonstrate mass shoaling behaviour of predatory cod and their capelin prey in the Barents Sea. The result is a mass consumption event, skewing the predator-prey ratio with implications for ecosystem stability. [ABSTRACT FROM AUTHOR]

Atlantic cod has a peculiar immune system, characterized by the loss of Major Histocompatibility Complex (MHC) class II pathway, and an extreme expansion of the MHC class I gene repertoire. This has led to the hypothesis that some of the MHC I variants have replaced MHC II by presenting exogenous-peptides in a process similar to cross-presentation. In mammals, MHC I loads endogenous antigens in the endoplasmic reticulum, but we recently found that different Atlantic cod MHC I gene variants traffic to endolysosomes. There, they colocalize with Tapasin and other components of the peptide-loading complex, indicating a plausible peptide-loading system outside the endoplasmic reticulum. In this study, we further characterize the identity of the Atlantic cod MHC I compartment (cMIC). We found that, similarly to mammalian MHC II compartment, cMIC contains late endosomal markers such as Rab7, LAMP1 and CD63. Furthermore, we identified Hsp90b1 (also known as grp94) and LRP1 (also known as CD91) as interactors of MHC I by mass spectrometry. As these two proteins are involved in cross-presentation in mammals, this further suggests that Atlantic cod MHC I might use a similar mechanism to present exogenous peptides, thus, compensating for the absence of MHC II. [ABSTRACT FROM AUTHOR]

Population dynamics depend on trophic interactions that are affected by climate change. The rise in sea temperature is associated with the disappearance of sea ice in the Arctic. In the Arctic part of the Barents Sea, Atlantic cod, capelin and polar cod are three fish populations that interact and are confronted with climate-induced sea ice reductions. The first is a major predator in the system, while the last two are key species in Arctic and sub-Arctic ecosystems, respectively. There are still many unknowns regarding how predicted environmental change may influence the joint dynamics of these populations. Using time series from a 32 year long survey, we developed a state-space model that jointly modelled the dynamics of cod, capelin and polar cod. Using a hindcast scenario approach, we projected the effect of reduced sea ice on these populations. We show that the impact of sea ice reduction and concomitant sea temperature increase may lead to a decrease of polar cod abundance at the benefit of capelin but not of cod which may decrease, resulting in strong changes in the food web. Our analyses show that climate change in the Arcto-boreal system can generate different species assemblages and new trophic interactions, which is the knowledge needed for effective management measures. [ABSTRACT FROM AUTHOR]

Fish spawning location and behaviour can be challenging to detect, especially in deep water. Here we utilise two large acoustic telemetry datasets from western and mid Norway to study the vertical movement dimension of individual Atlantic cod Gadus morhua spawning behaviour in their natural habitats. The datasets comprise ~ 6 million depth detections from 644 sexed, mature cod, collected at seven different Norwegian coastal cod spawning grounds during 2017–2021. During the spawning period, females were typically found at shallower depths compared to males, while this pattern was much less pronounced or absent outside this period. Furthermore, we identify a hitherto undescribed sex-dependent vertical movement behaviour: periodic descents, where females made deep dives, putatively associated with egg release and spawning, approximately every third day. Females not showing this behaviour tended to occupy deeper positions in the water column than the "periodic descent" females and hence may approach and retreat from spawning males more horizontally. These observed sex-specific behaviours correspond well to the lek-like description of the cod mating system and with cod reproductive physiology, where females are known to mature and release batches of eggs at intervals of several days as part of a bet-hedging strategy. [ABSTRACT FROM AUTHOR]

The status of Eastern Baltic cod (EBC) Gadus morhua has remained poor despite low fishing mortality for over a decade, including a fishing ban since 2019. Although the decline in productivity can be explained by lower individual growth and survival rates, other aspects of life‐history changes such as maturation patterns for EBC has so far not been sufficiently explored. According to current stock assessments, the median size at maturity (L50) has halved from 40 to around 20 cm in total length since the 1990s, while the overall size distribution has become increasingly truncated. It has previously been suggested that changes in L50 can be attributed to both fishing‐induced evolution and phenotypic plasticity induced by growth rates. However, since L50 is currently occurring around 20 cm, the maturation process must have been initiated at much smaller sizes, that is, long before the fish could be caught in the dominant trawl fishery at around 35 cm. In this study, we aimed to further investigate what drivers may have led to reduced productivity in EBC by determining variations in size at sexual maturity in longer time series than has been done before (1930s to 1980s) and include prey productivity and quality. We found that L50 declined already in the 1930s and thereafter remained stable at around 40 cm up to the 1990s. On a centurial perspective, L50 has been positively correlated to growth potential (L95), length diversity, total stock biomass, total catch and yield per recruit, while Fulton's condition factor was not related to L50. Our results suggest that the links between life‐history parameters and external drivers are complex, but the present unprecedented early onset of maturity and hence decline in L50 since the 1990s signals a decline in growth potential, which also has hampered the productivity of EBC. [ABSTRACT FROM AUTHOR]

A key ambition in care studies has been to study care in practice and as practice. By turning towards practices, care studies has rendered visible and acknowledged important work that is not captured through looking at formal procedures or official and written materials, such as policy documents and medical protocols. In this literature, document materials and the written have often been seen as unable to demonstrate and address the 'specificities of care' (Mol et al., 2010, p. 9). We challenge this view by showing how pragmatically-oriented approaches can be extended to the procedural and formalized aspects of care practices. We draw upon fieldwork in the life sciences—comparative immunology—investigated through experiments on Atlantic cod (Gadus Morhua). How to care for fish is a contested domain; many uncertainties exist around how to care for fish so that legal requirements are met. We ask: How are existing legal and ethical principles and procedures put to work in cod immunology and animal research? By what document-practices and document-tools is care for cod in research negotiated and settled? How does the cod stand out as an object of care in the life sciences? Our article answers these questions by empirically teasing out how scientists navigate the terrain and arguing for the importance of bringing the document-based realities of animal research into analysis. We do this by delineating three different versions of care: procedural care, skilled care, and dispassionate care. [ABSTRACT FROM AUTHOR]

Although fluctuations in the biomass of small pelagic fish are strong and rapid, they are largely investigated as individual events or generalized to what is common across several species and populations. The Barents Sea capelin population, which experienced four large decreases in biomass between 1980 and 2016, can be used to compare the similarity of causes and sequence of events leading up to large biomass decline in the same population. Here, we used an age-structured state-space model to investigate the possible contributions from somatic growth, food availability, temperature, predation by Atlantic cod, herring interactions, and/or fisheries on the capelin biomass declines. We recalculated total biomass while perturbing these effects and assessed the change in total biomass. We did not find a single, common cause for the dramatic biomass declines. Although median biomass increased in several of the scenarios, a large decline in total biomass was mostly retained. Atlantic cod predation and food availability influenced adult capelin biomass. Food availability mainly impacted the first period, while the importance of Atlantic cod predation increased from the first period to the third period. Reducing larval mortality from herring interactions or temperature did not suppress the biomass declines. Recruitment failures were maintained due to a combination of process errors and uncertainty in the effect of spawning biomass, and thus fisheries, on age 0 abundance. The impact of each perturbation depended on the specific ecosystem context at the time of the biomass decline. [ABSTRACT FROM AUTHOR]

Since sound from Atlantic cod (Gadus morhua) plays a significant role during their spawning activities, it is imperative to gain insights into their sound pressure levels. This knowledge is particularly valuable for understanding how cod responds to anthropogenic sounds, such as the intense sound from seismic air guns. In field experiments within sea cages using multiple instruments, including underwater cameras, a hydrophone, and an underwater acoustic vector sensor (AVS), the source level of cod grunts was scientifically measured. The measurements yielded an estimated median source level of 123.1 dB re 1 µPa at 1 m (121.8–124.2 dB, 95% confidence interval). The compact AVS measured collocated acoustic pressure and acoustic particle motions in three dimensions, providing valuable information regarding acoustic directionality in addition to sound pressure. This directional information assists in detecting the grunt bearing, estimating probable grunt propagation ranges, and subsequently reducing uncertainties associated with the estimation of the grunt source level. These experiments have demonstrated the AVS measured the cod vocalisations with directional information and can be potentially broadly used in other marine bioacoustics monitoring and tracking research. [ABSTRACT FROM AUTHOR]

Purpose: This paper explores how conflicting institutional logics shape the behaviors of macro- and micro-level actors in their use of a calculative practice. Thereby, this paper explains how quantification can undermine the intended purpose of a governance system based on a single number. Design/methodology/approach: The study draws upon the literature on calculative practices and institutional logics to present the case of how a single number—specifically the conversion factor for Atlantic Cod, established by macro-level actors for the purposes of governance within the Norwegian fishing industry—is interpreted and used by micro-level actors in the industry. The study is based on documents, field observations and interviews with fishers, landing facilities, and control authorities. Findings: The use of the conversion factor, while intended to protect fish stock and govern industry actions, does not always align with the institutional logics of micro-level actors. Especially during the winter season, these actors may seek to serve their interests, leading to potential system gaming. The reliance on a single number that overlooks seasonal nuances can motivate unintended behaviors, undermining the governance system's intentions. Originality/value: Integrating the literature on calculative practices with an institutional logics perspective, this study offers novel insights into the challenges of using quantification for the governance of complex industries. In particular, the paper reveals that when the logics of macro- and micro-level actors conflict in a single-number governance system, unintended outcomes arise due to a domination of the macro-level logics. [ABSTRACT FROM AUTHOR]

The results of our preliminary studies indicated that the diets of predatory fishes can be bioindicators of faunistic changes in ecosystems and indirectly of changes taking place in aquatic environments in the Pomeranian Bay. We examined the diet composition of top predators Gadus morhua, Sander lucioperca, Perca fluviatilis, and the mesopredator Neogobius melanostomus. The diet composition of the perch, pikeperch, and round goby in the Pomeranian Bay was analyzed for the first time. Our findings indicated that perch, an euryphagous species, is the best potential bioindicator because it is present in the area studied most of the year and has a low to moderate feeding index (FI). Baltic cod, also an euryphagous species, could be a good bioindicator in the areas where it is abundant and occurs frequently, but not in the Pomeranian Bay, where it is caught mainly in the fall. Round goby, which is present in the area studied and had a low FI, is a stenophagous species that preys mainly on benthic species, while pikeperch had a very high FI and the least number of prey species in its diet. The results of trophic interaction analysis among the predators analyzed and their non-native/invasive prey are also provided. [ABSTRACT FROM AUTHOR]

Abstract Background The Atlantic cod is a prolific species in the Atlantic, despite its inconsistent specific antibody response. It presents a peculiar case within vertebrate immunology due to its distinct immune system, characterized by the absence of MHCII antigen presentation pathway, required for T cell-dependent antibody responses. Thorough characterisation of immunoglobulin loci and analysis of the antibody repertoire is necessary to further our understanding of the Atlantic cod’s immune response on a molecular level. Results A comprehensive search of the cod genome (gadmor3.0) identified the complete set of IgH genes organized into three sequential translocons on chromosome 2, while IgL genes were located on chromosomes 2 and 5. The Atlantic cod displayed a moderate germline V gene diversity, comprising four V gene families for both IgH and IgL, each with distinct chromosomal locations and organizational structures. 5’RACE sequencing revealed a diverse range of heavy chain CDR3 sequences and relatively limited CDR3 diversity in light chains. The analysis highlighted a differential impact of V-gene germline CDR3 length on receptor CDR3 length between heavy and light chains, underlining different recombination processes. Conclusions This study reveals that the Atlantic cod, despite its inconsistent antibody response, maintains a level of immunoglobulin diversity comparable to other fish species. The findings suggest that the extensive recent duplications of kappa light chain genes do not result in increased repertoire diversity. This research provides a comprehensive view of the Atlantic cod's immunoglobulin gene organization and repertoire, necessary for future studies of antibody responses at the molecular level.

The gross pathology and the histopathological alterations identified in juvenile specimens of the European hake (Merluccius merluccius), one of the most important target species of commercial fisheries in the northwest Mediterranean, are described. A qualitative and semi‐quantitative histological approach was performed in specimens from 2007 and 2019. Prevalence and mean intensity of parasites and histopathological changes were calculated in both years. No macroscopic alterations were found in any organ but several parasites (e.g., copepods, nematodes, digeneans) were detected. Microscopically, alterations identified in gills included foci of inflammation and hyperplasia (present in 77.38% of hakes from both years), extensive hyperplasia (33.33%), and inflammation (16.65%) that were potentially related to the mechanical effects of monogeneans and copepods, cysts of unknown etiology (62.69%), and lamellar inflammation associated to Aporocotyle spinosicanalis eggs (8.33%). Granulomas and inflammatory focus were detected in the liver, spleen, and stomach, apparently associated with the presence of nematodes. Coelozoic myxosporean parasites were detected within the renal tubules (66.66%). Most of the pathologies detected were similar to those described in other gadoid species (i.e., Gadus morhua) and were usually related to the presence of ecto and endoparasites. The potential impact of parasites on the health of this fish species is discussed for improving the knowledge and management of these valuable fishing stocks. [ABSTRACT FROM AUTHOR]

Featured Application: During the desalting process of salted cod, important biochemical changes occur, which will reflect on the organoleptic properties of the final product (desalted cod). Subsequent high-pressure processing with low temperature (4 °C) desalting processes can improve the physicochemical and microbial quality of desalted cod. During the desalting of salted cod, significant textural, histological, and biochemical changes occur. Understanding these changes is crucial for enhancing the preservation and extending the shelf life of desalted cod. This study aimed to investigate the physicochemical quality parameters and enzymatic activities during the desalting process of cod (16 h at 4 and 20 °C) and to extend the shelf life of desalted cod through high-pressure processing (HPP) at 400 and 550 MPa for 5 min. During desalting, a correlation was noted between the pH and trimethylamine content in samples desalted at 20 °C, with both parameters increasing in the initial 4 h and stabilizing thereafter. The soluble protein in cod muscle decreased over desalting time, as it dissolved into the desalting water. Enzymatic activity showed a decline in cathepsins (B and D) and acid phosphatase throughout desalting, whereas lipase activity increased, particularly at 20 °C. HPP effectively extended the shelf life of desalted cod by controlling endogenous microbial growth, enabling an extension to 14–21 days compared to the 7 days observed in untreated control samples. This study highlights quality changes during desalting, with lesser effects at lower temperatures. Subsequent HPP improved the microbiological quality of desalted cod during refrigerated storage. [ABSTRACT FROM AUTHOR]

Nematodes pose significant challenges for the fish processing industry, particularly in white fish. Despite technological advances, the industry still depends on manual labor for the detection and extraction of nematodes. This study addresses the initial steps of automatic nematode detection and differentiation from other common defects in fish fillets, such as skin remnants and blood spots. VideometerLab 4, an advanced Multispectral Imaging (MSI) System, was used to acquire 270 images of 50 Atlantic cod fillets under controlled conditions. In total, 173 nematodes were labeled using the Segment Anything Model (SAM), which is trained to automatically segment objects of interest from only few representative pixels. With the acquired dataset, we study the potential of identifying nematodes through their spectral signature. We incorporated normalized Canonical Discriminant Analysis (nCDA) to develop segmentation models trained to distinguish between different components within the fish fillets. By incorporating multiple segmentation models, we aimed to achieve a satisfactory balance between false negatives and false positives. This resulted in 88% precision and 79% recall for our annotated test data. This approach could improve process control by accurately identifying fillets with nematodes. Using MSI minimizes unnecessary inspection of fillets in good condition and concurrently boosts product safety and quality. [ABSTRACT FROM AUTHOR]

Summary: The composite film with collagen as the main component has been widely used due to its characteristics of non‐toxicity, environmental protection and health. Fish skin, a by‐product of fish, is an excellent source of collagen. Thus, collagen was extracted from an under‐utilised species, Atlantic cod (Gadus morhua) skin, and the composite film of fish skin collagen–chitosan–cinnamon essential oil was prepared by casting. The effects of the ratio of collagen to chitosan (2:8, 4:6, 5:5, 6:4, 8:2) and the concentration of essential oil (0%, 0.1%, 0.2%, 0.3%, and 0.4% (v/v)) on the composite film were studied. The structures of the composite films were analysed using scanning electron microscopy (SEM), Fourier transforms infrared spectroscopy (FTIR), and X‐ray diffractometry (XRD). The collagen content of Atlantic cod skin is approximately 50.12%, which is significantly higher than that found in basa fish and Nile tilapia (P < 0.05). The content of hydroxyproline was 4.51%. Analyses of tensile strength, elongation at break, water vapor permeability, and water solubility showed Co4Ch6 (Co:Ch = 4:6) had the optimal comprehensive performance, and Co4Ch6–0.2 (Co4Ch6 with 0.2% CEO) had high water resistance in the high‐humidity environment. As the CEO concentration rose, the composite films' infrared absorption bands were enhanced in amplitude, and the XRD peaks were gradually intensified, indicating the internal crystallinity and, thereby, the opacity of the composite films were improved. The bacteriostasis zones Co4Ch6–0.4 against Escherichia coli and Staphylococcus aureus were 2.02 cm and 1.73 cm, respectively. The DPPH radical scavenging rate of Co4Ch6 rose with the increase in CEO concentration, and the DPPH radical scavenging rate of C04Ch6–0.4 was up to 48.56%. Thus, the composite films prepared from fish skin collagen, chitosan, and cinnamon essential oils have outstanding mechanical properties, barrier ability, and antimicrobial activity and are promising for application in food packaging and storage. In addition, the composite films showed a potential antioxidation ability, which might be used as green bioactive films to preserve nutraceutical products. [ABSTRACT FROM AUTHOR]

Toxicology studies in early fish life stages serve an important function in measuring the impact of potentially harmful substances, such as crude oil, on marine life. Morphometric analysis of larvae can reveal the effects of such substances in retarding growth and development. These studies are labor intensive and time consuming, typically resulting in only a small number of samples being considered. An automated system for imaging and measurement of experimental animals, using flow-through imaging and an artificial neural network to allow faster sampling of more individuals, has been described previously and used in toxicity experiments. This study compares the performance of the automated imaging and analysis system with traditional microscopy techniques in measuring biologically relevant endpoints using two oil treatments as positive controls. We demonstrate that while the automated system typically underestimates morphometric measurements relative to analysis of manual microscopy images, it shows similar statistical results to the manual method when comparing treatments across most endpoints. It allows for many more individual specimens to be sampled in a shorter time period, reducing labor requirements and improving statistical power in such studies, and is noninvasive allowing for repeated sampling of the same population. [ABSTRACT FROM AUTHOR]

Understanding and predicting interactions between predators and prey and their environment are fundamental for understanding food web structure, dynamics, and ecosystem function in both terrestrial and marine ecosystems. Thus, estimating the conditional associations between species and their environments is important for exploring connections or cooperative links in the ecosystem, which in turn can help to clarify such directional relationships. For this purpose, a relevant and practical statistical method is required to link presence/absence observations with biomass, abundance, and physical quantities obtained as continuous real values. These data are sometimes sparse in oceanic space and too short as time series data. To meet this challenge, we provide an approach based on applying categorical data analysis to present/absent observations and real‐number data. The real‐number data used as explanatory variables for the present/absent response variable are discretized based on the optimal detection of thresholds without any prior biological/ecological information. These discretized data express two different levels, such as large/small or high/low, which give experts a simple interpretation for investigating complicated associations in marine ecosystems. This approach is implemented in the previous statistical method called CATDAP developed by Sakamoto and Akaike in 1979. Our proposed approach consists of a two‐step procedure for categorical data analysis: (1) finding the appropriate threshold to discretize the real‐number data for applying an independent test; and (2) identifying the best conditional probability model to investigate the possible associations among the data based on a statistical information criterion. We perform a simulation study to validate our proposed approach and investigate whether the method's observation includes many zeros (zero‐inflated data), which can often occur in practical situations. Furthermore, the approach is applied to two datasets: (1) one collected during an international synoptic krill survey in the Scotia Sea west of the Antarctic Peninsula to investigate associations among krill, fin whale (Balaenoptera physalus), surface temperature, depth, slope in depth (flatter or steeper terrain), and temperature gradient (slope in temperature); (2) the other collected by ecosystem surveys conducted during August–September in 2014–2017 to investigate associations among common minke whales, the predatory fish Atlantic cod, and their main prey groups (zooplankton, 0‐group fish) in Arctic Ocean waters to the west and north of Svalbard, Norway. The R code summarizing our proposed numerical procedure is presented in S4S1. [ABSTRACT FROM AUTHOR]

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Despite decades of active fisheries management, many stocks of Atlantic cod in its southern range are in a depleted state and mortality estimates remain high. Recovery of these stocks, as defined by management areas, could be confounded by cod distributions shifting outside of these areas. Here, we assess data from internationally coordinated trawl surveys to investigate the distribution of three cod stocks in the Celtic Seas ecoregion, Irish Sea, Celtic Sea, and West of Scotland, from 1985 to 2021. We mapped cod densities, analyzed trends in mean weighted depth and bottom temperature, and calculated the center of gravity and equivalent area of the stocks. The distribution of the West of Scotland stock shifted north and east, spilling into the North Sea, while the Irish Sea and Celtic Sea stocks shifted west. Each stock showed decreasing trends in equivalent area, but there were no clear trends in the average depth occupied by the fish. There was no apparent relationship between temperature and the distribution of cod, as bottom temperature varied little from 1993 to 2021. Although Irish Sea cod showed a shift into warmer water, this was due to changes in survey distribution. The shift in distribution of the West of Scotland cod stock towards the North Sea whilst impairing local recovery provides further justification for the recent definition of its incorporation into a larger stock unit that includes the northwest of the North Sea. The Irish Sea and Celtic Sea cod stocks are neither shifting northwards, nor into deeper waters, but remained within current boundaries. This suggests that recent temperature conditions did not affect their distribution, but this may change as temperatures increase towards the limit for reproduction. [ABSTRACT FROM AUTHOR]

Globally, aging offshore oil and gas (O&G) platforms face resource depletion, and regulations often demand platform removal through decommissioning. In the North Sea, >€90 billion will be needed for decommissioning by 2060. However, the influence of O&G platforms on fish communities is poorly understood. This challenges predictions of possible fisheries scenarios associated with different decommissioning options. Here, we examined the role that North Sea platforms played on fish communities. We explored patterns of fish abundance and body size variation along transects from O&G platforms comparing catch per unit effort data. Fish abundance was positively associated with O&G platforms. Atlantic cod, plaice, saithe, and mackerel were most abundant near platforms. Similarly, larger Atlantic cod were near the O&G platforms. Our study provided information for decision‐making regarding platform decommissioning scenarios by evidencing O&G platform habitat provisioning for various commercial fish species. [ABSTRACT FROM AUTHOR]

During recent years, there has been a renewed interest in establishing farming of Atlantic cod (Gadus morhua) in Norway. However, a fatal abdominal disorder compromises animal welfare and causes economic losses. A similar problem was present during a previous attempt to establish Atlantic cod farming more than a decade ago. In this paper, we provide the first in‐depth description of this intestinal disorder, which is correctly denoted 'strangulating obstruction'. In affected fish, part of the intestine is permanently entrapped (incarcerated) under fibrous strands in the mesentery. The entrapment interferes with blood flow and physically blocks the intestine, causing a strangulating obstruction with severe venous congestion and ischemia of the intestinal wall. Furthermore, comparison of macroscopical and histological anatomy of farmed and wild Atlantic cod is presented and risk factors associated with the anatomical differences are discussed. [ABSTRACT FROM AUTHOR]

Hydrogels have the ability to retain large amounts of water within their three-dimensional polymer matrices. These attractive materials are used in medicine and the food industry; they can serve as the basis for structured food products, additives, and various ingredients. Gelatin is one of widely used biopolymers to create hydrogels that exhibit biocompatibility and tunable rheological properties. In this study, we offer a comparative analysis of rheological properties of gelatin-based hydrogels (C = 6.67%), including mammalian gelatins from bovine and porcine skins and fish gelatins from commercial samples and samples extracted from Atlantic cod skin. Mammalian gelatins provide high strength and elasticity to hydrogels. Their melting point lies in the range from 22 to 34 °C. Fish gelatin from cod skin also provides a high strength to hydrogels. Commercial fish gelatin forms weak gels exhibiting low viscoelastic properties and strength, as well as low thermal stability with a melting point of 7 °C. Gelatins were characterized basing on the analysis of amino acid composition, molecular weight distribution, and biopolymer secondary structure in gels. Our research provides a unique rheological comparison of mammalian and fish gelatin hydrogels as a tool for the re-evaluation of fish skin gelatin produced through circular processes. [ABSTRACT FROM AUTHOR]

In the marine environment, fish parasites are present in most seafood species. The most common are nematodes of the genus Anisakis, which can parasitize human tissues, causing anisakiasis and allergies—in some cases with a strong reaction, such as anaphylactic shock. This happens when people ingest live or dead larvae present in the muscles or viscera of a wide range of fish and cephalopods. Consumer education has been positioned as one of the most effective alternatives for its prevention. This study, carried out in Asturias (northwest Spain), sought to identify the seafood products that present the greatest risk of anisakiasis for consumers, taking into account their consumption, the prevalence of Anisakis, and consumer knowledge about this parasitosis. In the results, hake (Merluccius merluccius) and cod (Gadus morhua), frequently consumed in the region and with high parasite prevalence, do not pose a great risk because they are consumed when well cooked. Instead, sardine (Sardina pilchardus), highly consumed and less parasitized, and anchovy (Engraulis encrasicolus), highly parasitized and less consumed, would exhibit a medium risk. Young participants know more about the risks of anisakiasis from raw seafood. The gaps detected in the knowledge about the ability of temperature treatments to eliminate parasites, especially in allergic people, must be addressed for better prevention. We suggest campaigns adapted to the population sectors. [ABSTRACT FROM AUTHOR]

Many coastal ecosystems are impacted by human pressures. Rocky reefs are structurally complex habitats that often support elevated fish abundance and marine biodiversity. In the Baltic Sea, rocky reefs have suffered from extraction for decades, leading to a decrease in hard substrata and complex habitat availability.This study is the first to restore cobble reefs and examine the biological effects.Baited and unbaited underwater video systems (BRUVS and UBRUVS, respectively) were employed across five years to monitor fish communities before reef deployment in 2017 and after reef deployment in 2018 and 2021.Using a before–after control‐impact (BACI) study design with replicates, relative abundances of Atlantic cod (Gadus morhua), herring (Clupeidae sp.), goldsinny wrasse (Ctenolabrus rupestris), two‐spotted goby (Pomatoschistus flavescens), shore crab (Carcinus maenas), and flatfish (Pleuronectiformes spp.) were compared across time and test sites. Comparisons were conducted across 1) restored cobble reefs, 2) natural cobble reefs, and 3) sand‐bottom test sites.This study found positive reef restoration effects revealed consistently by BRUVS and UBRUVS in three species: Atlantic cod, goldsinny wrasse and two‐spotted goby. These findings indicate that A) it is possible to restore cobble reefs and the associated mobile fauna, but also that B) continued marine extraction of cobble degrades complex habitats to the detriment of various marine species.To preserve Atlantic cod, and other sensitive species, we emphasize ecosystem restoration and warn against marine cobble reef extraction in vulnerable areas. Restoration of marine habitats may contribute to achieving the UN sustainable development goal covering life below water. [ABSTRACT FROM AUTHOR]

Nitrogen isotope analyses of amino acids (δ15N‐AA) are being increasingly used to decipher trophic dynamics. Interpretation of δ15N‐AA in consumers relies on the assumption that consumer physiological status and nutritional status of prey have negligible influences on the trophic discrimination factor (TDF), hence a constant TDF value is used in trophic position (TP) equations. Recent experiments have shown that this is not always the case and there is also a need to validate derived TP estimates in the field. We take advantage of the uniquely long time series of environmental monitoring data and archived (frozen) samples from the species‐poor Baltic Sea. We analyzed δ15N‐AA in similar sized individuals of cod and in its prey herring from four decades, 1980–2018; including time periods where dramatic reduction in condition status of cod has occurred. We expected that TDF in trophic AAs would increase during periods of poor cod condition, resulting in inflated TP estimates. We found that calculated TP and empirical estimates of TDF (difference in δ15N in trophic AAs between cod and herring) for cod increased in recent decades and that this was linked to condition status, herring (prey) lipid content and the hypoxic state of the ecosystem. Statistically adjusting TP for condition and prey lipid content as well as environmental stress (hypoxia) resulted in lower cod TP which better resembled the observed decrease in herring TP in recent decades. TP calculated from stomach analysis data in cod individuals over the same period showed no trend over time and confirmed that adjusted TP estimates mirror the real dietary TP better than unadjusted. By simultaneously measuring condition/nutritional status in both predator and prey it is possible to adjust for them as confounding variables and decipher actual consumer TP, partly overcoming the issues of unknown and variable TDF‐values. Our study also highlights the importance of including environmental stressors (here hypoxia) when interpreting TP and reconstructing food webs. [ABSTRACT FROM AUTHOR]

Rationale Methods Results Conclusion Increasing demand for fish and seafood means that the traceability of marine products is becoming ever more important for consumers, producers and regulators. Highly complex and globalised supply networks create challenges for verifying a stated catch region. Atlantic cod is one of the most commercially important species in the northeast Atlantic. Several regional fisheries supply cod into the trade network, of which some are at greater risk of overexploitation than others. Tools allowing retrospective testing of spatial origin would significantly assist sustainable harvesting of fish, reducing incentives for illegal fishing and fraud.Here, we investigate whether stable isotope ratios of carbon, nitrogen and sulphur can be used to retrospectively identify the catch region of Atlantic cod (Gadus morhua). We measured the isotopic composition of muscle tissue from 377 cod from 10 catch regions across the northeast Atlantic and then applied three different assignment methods to classify cod by region of most likely origin. The assignment method developed was subsequently tested using independently sourced, known‐origin samples.Individual cod could be traced back to their true origin with an average assignment accuracy of 70–79% and over 90% accuracy for certain regions. Assignment success rates comparable to those using genetic techniques were achieved when assigning among restricted and pre‐selected regions. However, assignment accuracy to the fishery region estimated from independent samples across the whole geographic range of cod averaged ~25% overall, highlighting the need for careful application of isotope‐based approaches.Stable isotope techniques can provide effective tools to test for origin in Atlantic cod, but not all catch regions are isotopically distinct. Stable isotopes could be combined with genetic techniques to result in higher assignment accuracy than could be achieved using either method independently. Assignment potential can be estimated from reference datasets, but estimates of realistic assignment accuracy require independently collected data. [ABSTRACT FROM AUTHOR]

This study aimed to assess the effect of novel thermal glycation, utilizing microwave processing (100−150 °C) combined with sugars (glucose and lactose), on the in vitro protein digestibility, peptides, secondary structures, microstructures, and allergenic properties of Atlantic cod. The research demonstrated that microwave heating at 150 °C with glucose significantly reduced cod allergenicity by up to 16.16%, while also enhancing in vitro protein digestibility to 69.05%. Glucose was found to be more effective than lactose in conjunction with microwave heating in reducing the allergenicity of Atlantic cod. Moreover, treatments conducted at 150 °C were more effective in increasing in vitro protein digestibility and peptide content compared to those at 100 °C. This study revealed that the novel processing technique of thermal glycation effectively reduced the allergenicity of Atlantic cod. It also offered fresh insights into the potential benefits of combining microwave heating with sugars. [ABSTRACT FROM AUTHOR]

Background: The Atlantic cod is a prolific species in the Atlantic, despite its inconsistent specific antibody response. It presents a peculiar case within vertebrate immunology due to its distinct immune system, characterized by the absence of MHCII antigen presentation pathway, required for T cell-dependent antibody responses. Thorough characterisation of immunoglobulin loci and analysis of the antibody repertoire is necessary to further our understanding of the Atlantic cod's immune response on a molecular level. Results: A comprehensive search of the cod genome (gadmor3.0) identified the complete set of IgH genes organized into three sequential translocons on chromosome 2, while IgL genes were located on chromosomes 2 and 5. The Atlantic cod displayed a moderate germline V gene diversity, comprising four V gene families for both IgH and IgL, each with distinct chromosomal locations and organizational structures. 5'RACE sequencing revealed a diverse range of heavy chain CDR3 sequences and relatively limited CDR3 diversity in light chains. The analysis highlighted a differential impact of V-gene germline CDR3 length on receptor CDR3 length between heavy and light chains, underlining different recombination processes. Conclusions: This study reveals that the Atlantic cod, despite its inconsistent antibody response, maintains a level of immunoglobulin diversity comparable to other fish species. The findings suggest that the extensive recent duplications of kappa light chain genes do not result in increased repertoire diversity. This research provides a comprehensive view of the Atlantic cod's immunoglobulin gene organization and repertoire, necessary for future studies of antibody responses at the molecular level. [ABSTRACT FROM AUTHOR]

The recovery of many groundfish stocks in the Northwest Atlantic has been impeded by elevated mortality among older/larger individuals. The sources of groundfish mortality are generally uncertain, though predation by growing grey seal herds and unreported fishing are thought to be drivers of mortality for Atlantic cod (Gadus morhua) on the Western Scotian Shelf and Bay of Fundy (4X5Y), as well as in nearby ecosystems. We developed a statistical catch-at-age model for 4X5Y cod that accounted for grey seal predation and bycatch/discards and tested the model across a broad range of consumption and discard scenarios. We found that most cod mortality was unexplained by seal predation and fishing when cod comprised a small to moderate portion of the grey seal diet. Predation and fishing accounted for slightly more than half of recent cod mortality when cod was highly prevalent in the seal diet (45% by weight) but explained little historical mortality. Bycatch was a minor source of mortality prior to 2019 and accounted for 0.%1–8.1% of recent mortality. Increased sampling of seal diets and monitoring of emerging seal colonies is necessary for reducing uncertainties around seal predation effects in the Northwest Atlantic. [ABSTRACT FROM AUTHOR]

With a biomass of ∼4 million tonnes, and annual catches of 900 000 tonnes, the northeast Atlantic (NEA) cod stock in the Barents Sea is the world's largest. Scientists have been trying to explain the variability in recruitment of this stock for over 100 years, in particular connecting it to spawning stock biomass and environmental factors such as temperature. It has been suggested that the combination of ocean acidification and global warming will lead to a significant decrease in the spawning stock biomass and an eventual (end of this century) collapse of the NEA cod stock in the Barents Sea. We show that a temperature- and OA-driven decline in recruits will likely lead to a smaller cod stock, but not to a collapse. Instead, the level of fishing pressure and, not least, the choice of the recruitment function applied in simulations and how it relates to temperature, is extremely important when making such forecasts. Applying a non-linear relationship between temperature and spawning stock biomass—as has been done in studies that predict a collapse of the NEA cod stock—does not improve accuracy and, in addition, adds a large decrease in number of recruits that is not biologically supported. [ABSTRACT FROM AUTHOR]

The International Union for Conservation of Nature (IUCN) Red List identifies threatened and endangered species and is a key instrument in global biodiversity conservation efforts. Our understanding of the structure and value of genetic biodiversity below the species level is rapidly increasing. Nonetheless, the IUCN assessment criteria overlook genetic variation within species. Here, we address this blind spot and discuss the principles of species conservation status classification relative to intraspecific biodiversity. We focus on coastal species, which thrive in heterogeneous environments known to drive genetic differentiation. The focal example species, Atlantic cod and sugar kelp, have contrasting life histories, are ecologically and economically important constituents of the coastal ecosystem, and are currently not classified as threatened in Norway and Canada. We expose important variation in population structure, the presence of ecotypes and genetic-environment covariation, as well as loss of ecotypes that threatens the conservation of these species. Because the genetic makeup of species directly influences their resilience, omitting this information from conservation status assessments can result in loss of adaptive capacity to future stressors, such as climate change. Consequently, recognizing and preserving intraspecific variation emerges as vital for species' abilities to adapt to and survive in future ocean conditions. [ABSTRACT FROM AUTHOR]

Oil production in the Arctic shelf and its shipping via the Northern Sea Route increase risks of pollution of Arctic ecosystems with oil and its products. Polyaromatic hydrocarbons are known to be the most toxic oil components, with phenanthrene being the most abundant among them and causing the most robust effects. Phenanthrene is known for its high toxicity for developing fish hearts, with its cardiotoxic effects being species-specific. Meanwhile, the effects of phenanthrene on cardiac function in Arctic fish, including commercially important fish species, are still poorly understood. Here, we studied the effects of phenanthrene on electrical activity and ionic currents in isolated ventricular cardiomyocytes of the Atlantic cod (Gadus morhua) using the patch clamp technique. The major ionic currents in cod myocardium were IKr, IK1, INa and ICa. Phenanthrene at a concentration of 1 µM (1) had no effect on the duration of action potentials (APs), (2) suppressed rapid delayed rectifier K+ current IKr by 61.33 ± 3.94%, thus decreasing the repolarization reserve in cardiomyocytes, (3) had no effect on either the resting potential level or background inward rectifier K+ current (IK1), (4) decreased AP upstroke velocity due to suppression of fast Na+ current (INa), (5) insignificantly reduced the amplitude of Ca2+ current (ICa) and accelerated its inactivation, which overall led to a decrease in ICa total cumulative charge transfer. Thus, the effects of phenanthrene on cod myocardium at a cellular level can be characterized as potentially proarrhythmic, which makes cod populations in the Arctic seas vulnerable to pollution of the aquatic environment with toxic oil components during oil spills in the event of man-made disasters. [ABSTRACT FROM AUTHOR]

Many management and conservation contexts can benefit from understanding relationships between species abundances, which can be used to improve predictions of species occurrence and abundance.We present conditional prediction as a tool to capture information about species abundances via residual covariance between species. From a fitted joint species distribution model, this framework produces a species coefficient matrix that contains relationships between species abundances. The species coefficients allow co‐observed species to be treated as a second set of predictors supplementing covariates in the model to improve prediction. We use simulations to demonstrate the potential benefits and limitations of conditional prediction across data types and species covariance before applying conditional prediction to two management contexts with real data.Simulations demonstrate that conditional prediction provides the largest benefits to continuous data and when there is residual covariance between many species.In our first application, we show that conditioning on other species improves in‐sample and out‐of‐sample predictions of fish and invertebrate species, including Atlantic cod. In our second application, we show that the species coefficient matrix can be used to identify bird species at risk of nest parasitism by Brown‐headed Cowbirds.Synthesis and applications. We present guidelines for using conditional prediction, which can help understand relationships between species abundances, improve predictions and inform conservation in a variety of contexts. [ABSTRACT FROM AUTHOR]

Egg quality in fishes is commonly determined by fertilisation success and cleavage patterns as a phenotypic outcome of underlying regulatory mechanisms. Although these phenotypic estimators of egg quality are useful in farming conditions, these "good quality" egg batches do not always translate to good larval growth and survival. The identification of genes involved in embryonic development may help find links between genetic factors of maternal origin and egg quality. Herein, the relative expression of seven stage-specific developmental genes of Atlantic cod was analysed using quantitative PCR to understand the function during embryogenesis and its relationship with egg quality. Genes ccnb2 and pvalb1 showed significant differential expression between developmental stages and significant upregulation from blastula and somite stages, respectively. The comparison of spawning batches showed that the relative gene expression of genes ccnb2, acta, tnnt3 and pvalb1 was significantly higher from the middle of the spawning season where phenotypic quality estimators establish the best egg quality. Moreover, a positive significant correlation was observed between quality estimators based on egg morphology and the genetic expression of genes acta and acta1 during somitogenesis. This study suggests that the combination of quality estimators, genetics and batch timing could help optimise reproductive protocols for commercial stocks of Atlantic cod. [ABSTRACT FROM AUTHOR]

Seagrass meadows provide an important nursery and feeding habitat for fish, globally. However, limited data exist on how these vegetated coastal ecosystems affect local fish stocks over longer time periods. By means of beach seine hauling with a bio‐monitoring seine net, we collected fish data in Kronborg Bay (Denmark) over 4 years. The bay contains both vegetated and bare sediment areas in close proximity to Kronborg Castle in Elsinore and is part of the Øresund strait; a dynamic marine environment linking the Baltic Sea with the inner Danish waters (Kattegat). We investigated the biodiversity and fish abundance in a healthy seagrass meadow and compared it with a bare adjacent sediment area. We show that seagrass is important for fish species like the Atlantic cod, the two‐spotted goby, and the broadnosed pipefish. The seagrass meadow harboured more fish species and higher biodiversity, while the number of individuals was higher in the adjacent bare sediment area as a result of high abundances of lesser sand eel. Pilou's evenness and the Shannon‐Wiener index showed 2–4‐fold higher biodiversity in the seagrass meadow. The seagrass meadow harboured about 35% more fish species than the bare adjacent sediment. The Atlantic cod was almost entirely found in the seagrass meadow, while lesser sand eel that showed an overall increase in abundance in both habitats, represented the largest proportion of the total number of fish individuals (up to about 60%) and was mostly found on the bare adjacent sediment. Species abundance was analysed for changes over time, where, for example the European plaice showed an increase in abundance over the 4‐year period of investigation. Seagrass meadows can thus be very important for the Atlantic cod population in the Øresund strait and generally for local fish productivity, abundance and diversity. [ABSTRACT FROM AUTHOR]

Seasonal migrations of marine fish between shallow summer feeding habitats and deep overwintering grounds are driven by fluctuations in the biotic and abiotic environment as well as by changes in the internal state. Ontogenetic shifts in physiology and metabolism affect the response to environmental drivers and may lead to changes in migration timing and propensity. In this study, we investigated the effect of temperature and body size on migration timing and depth distribution in acoustically tagged Atlantic cod, Gadus morhua, and saithe, Pollachius virens, during the period of seasonal migration from shallow summer habitats. The results from our study revealed a wide range of horizontal and vertical distribution of age 1 and 2 G. morhua within the fjord. Larger G. morhua inhabited deeper, cooler waters than smaller juveniles, likely reflecting size‐dependent thermal preferences and predation pressure. Conversely, juvenile P. virens occupied primarily shallow waters close to land. The variation in depth distribution of G. morhua was mainly explained by body size and not, against our predictions, by water temperature. Conversely, the dispersal from the in‐fjord habitats occurred when water temperatures were high, suggesting that seasonal temperature fluctuations can trigger the migration timing of P. virens and larger G. morhua from summer habitats. Partial migration of small juvenile G. morhua from in‐fjord foraging grounds, likely influenced by individual body condition, suggested seasonal migration as a flexible strategy that individuals may use to reduce predation and energetic expenditure. Predation mortality rates of tagged juveniles were higher than previously suggested and are the first robust predation mortality rates for juvenile G. morhua and P. virens estimated based on acoustic transmitters with acidity sensors. The results have relevance for climate‐informed marine spatial planning as under the scenario of increasing ocean temperatures, increasing summer temperatures may reduce the juveniles' resource utilization in the shallow summer nurseries, resulting in lower growth rates, increased predation pressure, and lower chances of juvenile winter survival. [ABSTRACT FROM AUTHOR]

Benchtop diffusion nuclear magnetic resonance (NMR) spectroscopy was used to perform quantitative monitoring of enzymatic hydrolysis. The study aimed to test the feasibility of the technology to characterize enzymatic hydrolysis processes in real time. Diffusion ordered spectroscopy (DOSY) was used to measure the signal intensity and apparent self‐diffusion constant of solubilized protein in hydrolysate. The NMR technique was tested on an enzymatic hydrolysis reaction of red cod, a lean white fish, by the endopeptidase alcalase at 50°C. Hydrolysate samples were manually transferred from the reaction vessel to the NMR equipment. Measurement time was approximately 3 min per time point. The signal intensity from the DOSY experiment was used to measure protein concentration and the apparent self‐diffusion constant was converted into an average molecular weight and an estimated degree of hydrolysis. These values were plotted as a function of time and both the rate of solubilization and the rate of protein breakdown could be calculated. In addition to being rapid and noninvasive, DOSY using benchtop NMR spectroscopy has an advantage compared with other enzymatic hydrolysis characterization methods as it gives a direct measure of average protein size; many functional properties of proteins are strongly influenced by protein size. Therefore, a method to give protein concentration and average size in real time will allow operators to more tightly control production from enzymatic hydrolysis. Although only one type of material was tested, it is anticipated that the method should be applicable to a broad variety of enzymatic hydrolysis feedstocks. [ABSTRACT FROM AUTHOR]

Lumpfish (Cyclopterus lumpus) mortalities have been reported during the summer at some North Atlantic salmon cage‐sites where they serve as "cleaner fish." To better understand this species' physiology and whether limitations in their metabolic capacity and thermal tolerance can explain this phenomenon, we compared the aerobic scope (AS) of 6°C‐acclimated lumpfish (~50 g and 8.8 cm in length at the beginning of experiments) when all individuals (N = 12) were given a chase to exhaustion, a critical swim speed (Ucrit) test, and a critical thermal maximum (CTMax) test (rate of warming 2°C h−1). The Ucrit and CTMax of the lumpfish were 2.36 ± 0.08 body lengths per second and 20.6 ± 0.3°C. The AS of lumpfish was higher during the Ucrit test (206.4 ± 8.5 mg O2 kg−1 h−1) versus that measured in either the CTMax test or after the chase to exhaustion (141.0 ± 15.0 and 124.7 ± 15.5 mg O2 kg−1 h−1, respectively). Maximum metabolic rate (MMR), AS, and "realistic" AS (ASR) measured using the three different protocols were not significantly correlated, indicating that measurements of metabolic capacity using one of these methods cannot be used to estimate values that would be obtained using another method. Additional findings include that (1) the lumpfish's metabolic capacity is comparable to that of Atlantic cod, suggesting that they are not as "sluggish" as previously suggested in the literature, and (2) their CTMax (20.6°C when acclimated to 6°C), in combination with their recently determined ITMax (20.6°C when acclimated to 10°C), indicates that high sea‐cage temperatures are unlikely to be the primary cause of lumpfish mortalities at salmon sea‐cages during the summer. [ABSTRACT FROM AUTHOR]

Otoliths of the fish's inner ear serve as a natural chronological recorder because of their continuous formation marked by daily, monthly, and annual increments. Despite their importance, the comprehensive protein content of otoliths remains not fully identified. Using the label-free shotgun proteomics method with one-dimensional liquid chromatography coupled to electrospray ionization-orbitrap tandem mass spectrometry, we quantified a broad range of proteins, with individual otoliths containing between 1341 and 1839 proteins. The identified proteins could potentially serve as a blueprint for fish growth from embryo to adult. We quantified eleven heat-shock proteins (HSPs) in both sexes and several proteins impacted by endocrine disruptors, indicating the otolith's capacity to reflect environmental stress, potentially linked to climate change effects and altering of hormonal and neuroendocrine functions. Our bioinformatic ontology analysis confirmed the presence of proteins critical for various biological processes, including structural and enzymatic proteins. Protein–protein interaction (PPI) mapping also identified key interactions between the identified proteins. These findings significantly advance our understanding of otolith proteomics, offering a solid foundation for future work. Most of the identified proteins deposited daily and influenced by the environment were not implicated in the biomineralization of otolith, raising the potential for the otolith proteome to recreate details of fish life history at previously unrealized levels. [ABSTRACT FROM AUTHOR]

Increasing ocean temperature will speed up physiological rates of ectotherms. In fish, this is suggested to cause earlier spawning due to faster oocyte growth rates. Over time, this could cause spawning time to become decoupled from the timing of offspring food resources, a phenomenon referred to as trophic asynchrony. We used biological data, including body length, age, and gonad developmental stages collected from >125,000 individual Northeast Arctic cod (Gadus morhua) sampled between 59 and 73° N in 1980–2019. Combined with experimental data on oocyte growth rates, our analyses show that cod spawned progressively earlier by about a week per decade, partly due to ocean warming. It also appears that spawning time varied by more than 40 days, depending on year and spawning location. The significant plasticity in spawning time seems to be fine‐tuned to the local phytoplankton spring bloom phenology. This ability to partly overcome thermal drivers and thus modulate spawning time could allow individuals to maximize fitness by closely tracking local environmental conditions important for offspring survival. Our finding highlights a new dimension for trophic match–mismatch and should be an important consideration in models used to predict phenology dynamics in a warmer climate. [ABSTRACT FROM AUTHOR]

In May 2012–2015, 90 large (85–117 cm) Northern cod (Gadus morhua) with pop-up satellite archival tags (PSATs) set to release 1 year later were released from offshore spawning aggregations on the northeast Newfoundland shelf. Forty-nine (54%) transmitted or were recovered; 82% migrated inshore and 15% remained offshore (balance predated). Geo-locations were based on release, capture, and surfacing positions, and at tag-recorded depths <50 m, on Kalman-predicted light-based longitudes matched with coastal bathymetry. Migrating fish moved southwestward on average 5° longitude (350 km) and 2° latitude (222 km) to the northeast coast of Newfoundland, southern Labrador, and northern Grand Bank, as historically from similar release points. Migration onset through the Labrador Current (<0 °C) and arrival inshore were correlated with capelin (Mallotus villosus) peak spawning, inshore duration with capelin, and cod biomass. Both species were delayed a month from historical norms. The probability of a cod remaining inshore after 1 December was 50%, which could impact time-dependent surveys. Fishing exploitation was 6% and predation 5%. Northern cod have re-established historical spatial migration patterns, with capelin a key influence on timing and duration inshore. [ABSTRACT FROM AUTHOR]

Aquaculture provides an important and expanding source of protein rich and healthy food to the world. However, to minimize environmental harm from aquaculture, interactions with wild fish communities need to be thoroughly assessed. Here, we characterize the existing knowledge pertaining to such interactions, exemplified with Atlantic salmon (Salmo salar) farming in open net pens along the Norwegian coast and potential consequences for wild Atlantic cod (Gadus morhua) populations. Importantly, the wild cod fishery also provides a protein rich, high quality food source with high economic value. We identify seven risk sources that may affect behaviour, physiology, and survival in wild cod. Of particular importance is the large amount of waste feed that causes wild fish to aggregate around farms, thereby altering a multitude of ecological interactions including predation and disease transmission. Moreover, altered food quality in pellets may alter physiological processes and cause mortality to vulnerable life‐stages in wild cod. More research is needed on mechanisms and thresholds for harm. As the most important cod fisheries are found in northern Norway, where climate change also is rapid, we expect stronger and potentially more harmful interactions between fish farming and wild cod fisheries as aquaculture continues to expand. We hope that our analysis will inspire further research, on farmed salmon and wild cod interactions, but also on aquaculture and wild fish interactions in general. Such research is fundamental for the development of management systems that can reduce the impact of aquaculture on fisheries and the environment. [ABSTRACT FROM AUTHOR]