1. Variances in the Expression Profile of Circadian Clock-Related Genes in Astrocytic Brain Tumors.
- Author
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Staszkiewicz, Rafał, Sobański, Dawid, Pulka, Wojciech, Gładysz, Dorian, Gadzieliński, Marcin, Strojny, Damian, and Grabarek, Beniamin Oskar
- Subjects
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GLIOMAS , *PROTEIN kinases , *DATA analysis , *T-test (Statistics) , *NEUROGLIA , *MICRORNA , *ENZYME-linked immunosorbent assay , *REVERSE transcriptase polymerase chain reaction , *TUMOR markers , *DESCRIPTIVE statistics , *DNA methylation , *GENE expression profiling , *MICROARRAY technology , *ANALYSIS of variance , *STATISTICS , *CANCER genes , *TUMOR classification , *DATA analysis software , *BRAIN tumors , *DISEASE progression - Abstract
Simple Summary: This study investigates the role of circadian clock genes in the progression of astrocytic tumors, a common type of brain tumor. We aimed to understand how these genes, which control the body's daily rhythms, behave differently in low-grade versus high-grade tumors. Our findings reveal that certain circadian clock genes are more active in advanced tumor stages, potentially driving tumor growth. Additionally, we discovered that changes in DNA methylation and microRNAs might regulate these genes. Understanding these molecular changes could help identify new biomarkers for tumor diagnosis and progression, offering new avenues for targeted treatments. This research provides valuable insights into the complex biology of brain tumors and highlights the importance of circadian genes in the development of cancer. This study explores the role of circadian clock genes in the progression of astrocytic tumors, a prevalent type of brain tumor. The aim was to assess the expression patterns of these genes in relation to the tumor grade. Using microarray analysis, qRT-PCR, and methylation-specific PCR, we examined gene expression, DNA methylation patterns, and microRNA interactions in tumor samples from 60 patients. Our results indicate that the expression of key circadian clock genes, such as clock circadian regulator (CLOCK), protein kinase AMP-activated catalytic subunit alpha 1 (PRKAA1), protein kinase AMP-activated catalytic subunit alpha 2 (PRKAA2), protein kinase AMP-activated non-catalytic subunit beta 1 (PRKAB1), protein kinase AMP-activated non-catalytic subunit beta 2 (PRKAB2), period circadian regulator 1 (PER1), period circadian regulator 2 (PER2) and period circadian regulator 3 (PER3), varies significantly with the tumor grade. Notably, increased CLOCK gene expression and protein levels were observed in higher-grade tumors. DNA methylation analysis revealed that the promoter regions of PER1-3 genes were consistently methylated, suggesting a mechanism for their reduced expression. Our findings also underscore the complex regulatory mechanisms involving miRNAs, such as hsa-miR-106-5p, hsa-miR-20b-5p, and hsa-miR-30d-3p, which impact the expression of circadian clock-related genes. This underscores the importance of circadian clock genes in astrocytic tumor progression and highlights their potential as biomarkers and therapeutic targets. Further research is needed to validate these results and explore their clinical implications. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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