Search

A substantial proportion of HER2+ breast cancer patients do not benefit from HER2-targeted therapy. Here, the authors identify a population of cancer-associated fibroblasts involved in the suppression of trastuzumab-induced ADCC that can be pharmacologically targeted to raise treatment effectiveness in unresponsive tumors. About 50% of human epidermal growth factor receptor 2 (HER2)+ breast cancer patients do not benefit from HER2-targeted therapy and almost 20% of them relapse after treatment. Here, we conduct a detailed analysis of two independent cohorts of HER2+ breast cancer patients treated with trastuzumab to elucidate the mechanisms of resistance to anti-HER2 monoclonal antibodies. In addition, we develop a fully humanized immunocompetent model of HER2+ breast cancer recapitulating ex vivo the biological processes that associate with patients' response to treatment. Thanks to these two approaches, we uncover a population of TGF-beta-activated cancer-associated fibroblasts (CAF) specific from tumors resistant to therapy. The presence of this cellular subset related to previously described myofibroblastic (CAF-S1) and podoplanin+ CAF subtypes in breast cancer associates with low IL2 activity. Correspondingly, we find that stroma-targeted stimulation of IL2 pathway in unresponsive tumors restores trastuzumab anti-cancer efficiency. Overall, our study underscores the therapeutic potential of exploiting the tumor microenvironment to identify and overcome mechanisms of resistance to anti-cancer treatment.

Detailed magnetization, specific heat, and 7Li nuclear magnetic resonance (NMR) measurements on single crystals of the hyperhoneycomb Kitaev magnet β-Li2IrO3 are reported. At high temperatures, anisotropy of the magnetization is reflected by the different Curie-Weiss temperatures for different field directions, in agreement with the combination of a ferromagnetic Kitaev interaction (K) and a negative off-diagonal anisotropy (Γ) as two leading terms in the spin Hamiltonian. At low temperatures, magnetic fields applied along a or c have only a weak effect on the system and reduce the Néel temperature from 38 K at 0 T to about 35.5 K at 14 T, with no field-induced transitions observed up to 58 T on a powder sample. In contrast, the field applied along b causes a drastic reduction in the TN that vanishes around Hc = 2.8 T, giving way to a crossover toward a quantum paramagnetic state. Li NMR measurements in this field-induced state reveal a gradual line broadening and a continuous evolution of the line shift with temperature, suggesting the development of local magnetic fields. The spin-lattice relaxation rate shows a peak around the crossover temperature 40 K and follows power-law behavior below this temperature.

Retention and performance in introductory biology classes is a challenge for many institutions, particularly at two-year schools. Active learning, practice, peer lead workshops and structure have all been shown to increase performance in these classes. A meta-analysis by Freeman et al. (2014) showed that science courses that incorporate active learning increase exam scores and the chance of passing the course. Arbruster et al. (2009) showed an increase in exam scores and student engagement in introductory biology courses specifically. Retrieval and practice have also been shown to increase learning (Karpicke and Blunt 2011, Freeman et al. 2007). In 2009, Ralph Preszler demonstrated that peer lead workshops increase student learning and engagement in introductory biology courses. In teaching past courses I used lecture combined with questioning of the entire class, sometimes with clickers sometimes using the traditional raised hand method, and case studies; however, students did not come to class prepared, leading to repetition of the basic material in the text during lecture and leaving little time for active learning exercises. This lead to a major reorganization of all my classes in the summer of 2013. The reorganized classes included Bio 101, a first semester biology course for nonmajors ranging from pre-nursing to business to art majors. Bio 101 covers basic chemistry, the cell, energy transfer, genetics, and evolution, and has a high drop rate, similar to other institutions. A modified Team Based Learning (TBL) format, with built-in increased active learning, recall, structure and peer lead work, was expected to give an increase in retention and exam scores in introductory biology courses. The modified team-learning method used combined TBL, as outlined in Michaelson et al. (2003), with various lecture lengths and application types. Teams were formed at the beginning of the semester and remained for the entire semester. Readiness assessment tests (RATs) were based on readings and other supplementary material provided on Blackboard. RATs were taken first individually (iRAT) then as a team (tRAT). RATs were evaluated for areas of confusion and followed by lecture on these topics. After lecture, various types of applications were implemented including case studies, problem sets, or discussion/acting. Four tests were given during each semester. Retention and average exam scores in introductory biology courses taught by the same instructor were compared between the 2012 and 2013 academic years. In 2012, lecture combined with moderate use of case studies and other types of active learning (clickers) were used. Two sections of Bio 101 were taught in the fall of 2012 and three sections in the spring of 2013, for a total of 170 students. The modified TBL approach was implemented in 2013 as described above. One section was taught in each semester of the 2013 academic year for a total of 42 students. Implementing the modified TBL format lead to a 10% decrease in student withdrawals from the course. The average final grade was 0.20 grade points higher after implementation. In addition there was a 14% increase in students passing the course (D or above) and a modest (6%) increase in students earning a C or higher. There was a small, but statistically significant increase in overall average exam scores and for exam one (t-test, p0.05). These data support work that has been done in other introductory biology classrooms and demonstrate that the above changes in course format can benefit students enrolled in two-year institutions. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Course design, Teaching approaches, The goal of the present study was to use a concept-mapping task to gauge student understanding of the Central Dogma of molecular biology. Concept maps challenge students to assimilate new concepts into existing frameworks, and thus require the ability to synthesize new information. The hypothesis guiding this study is that student performance on concept maps reveals specific Central Dogma misconceptions gained, lost, and retained by students. Students in two sections of a genetics course at Beloit College completed pre- and posttest concept mapping tasks using 27 terms related to the Central Dogma. Each map was scored in two ways: 1) complexity (total number of linking verbs, also known as propositions, used), and 2) propositional validity (number of valid propositions/total number of propositions). A comparison of pre- and post-test map scores revealed a statistically significant increase in both complexity (p, The use of case studies as a method of teaching is known to improve concept knowledge as well as critical thinking, making it a superior option to lecture-based learning. Peer-instruction and use of clicker questions are types of active-learning that have also been shown to improve student performance in STEM courses. The objective of this study was to design a laboratory exercise for an upper-level biology course that would incorporate peer-instruction and case studies with the use of a clicker response system. Students (n=19) were separated into groups of three or four. They were presented with a scenario regarding a patient who was demonstrating symptoms of pathology and were asked to use the clickers to individually select an answer from a multiple choice question about the scenario presented (individual selection). The questions were categorized as testing “knowledge,” “comprehension,” “analysis,” and “synthesis” under Bloom’s taxonomy. Once the class voted, the histogram was shown, and, if there was < 80% consensus for the correct answer, students had to discuss their answers as a group (peer-group instruction) and re-vote as a group. If < 80% consensus was still observed, each group took turns discussing their answer with the rest of the class (peer-class instruction), and the class re-voted. Each case study had five to six questions, and three case studies were utilized throughout the semester. Correct student answers before and after peer instruction were quantified, and a survey was performed at the end of the semester to measure student satisfaction. On average, 55.4%, 83.5%, and 94.7% of students picked the correct answer after individual selection, peer-group instruction, and peer-class instruction, respectively. Additionally, students rated the exercise an average of 4.8 on a scale of 1 to 5 asking how much they enjoyed the exercise. These results suggest that the use of peer instruction and clicker questions in case study–based learning improves critical thinking as well as application and analysis of concepts for upper-level biology students, and should be explored further as a model for undergraduate biology teaching. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Student learning, TH!NK is a new initiative at NC State University focused on enhancing students’ higher-order cognitive skills. As part of this initiative, I explicitly emphasized critical and creative thinking in an existing bacteriophage discovery first-year research course. One strategy that I employed to enhance students’ critical thinking skills was the use of discipline-specific, real-world scenarios. As an in-class activity, students participated in responding to and discussing a number of critical thinking scenarios over the course of the semester. In this paper, I share a general “formula” for writing scenarios, as well as several specific scenarios I created for my course. I also present how embedding aspects of the scenarios in assignments such as lab reports and reviews of the primary literature enrich these activities. I assessed student gains in critical thinking skills using a pre-/posttest model of the Critical Thinking Assessment Test (CAT), developed by Tennessee Technological University. I observed a positive gain trend in most of the individual skills assessed in the CAT, with a statistically significant large effect on critical thinking skills overall. The strategies described here can be modified for use in biology and other STEM disciplines, as well as in diverse disciplines in the social sciences and humanities. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Student learning, Teaching approaches, Teaching tools, Undergraduate research is known to increase STEM student achievement (Russell et al. 2007, Lopatto 2007, Villarejo et al. 2008), so the Small World Initiative (SWI), which has STEM students discover novel antibiotics in undergraduate labs, was tested to see whether it improved student success. We adapted the SWI to a Florida Atlantic University Introductory Biology nonmajors lab using a regular lab section by the same TA as a control. Our hypothesis was that SWI students would earn higher grades and critical-thinking posttest scores than controls. Students in both groups took one of three lecture sections from two different instructors. California Critical Thinking Skills Test (CCTST) Pre- and Posttests were offered to both groups for ∼1.5% lab extra-credit. Labs started with 22 SWI and 24 controls. All SWI students completed lab and 21 earned above C-. Two controls dropped the course, but 22 earned above C in lab (control lab average=88%). All SWI students earned above C in lecture, but 6 of 22 controls had below D+ and three failed. A two-tailed Fisher’s exact test comparing SWI vs. controls for percentage of students earning above C and percentage earning below D+ in lecture showed SWI students had significantly better lecture grades (pp, Previous data have indicated that an activity in which students use their own basal body temperature to predict hormone changes increases learning outcomes. In this study I am investigating whether using data collected from one’s self improves learning outcomes and/or student engagement compared with the same activity in which data are not collected from one’s self but provided. My hypothesis is that both learning outcomes and student engagement will be higher in groups that collect self data. To test this hypothesis, I compared student survey results and changes in the percentages of correct quiz answers before and after students completed two activities in which half of the students collected data from themselves and the other half used data that were provided. In one activity, students predicted hormonal changes associated with the menstrual cycle based on basal body temperature. In the other activity, students predicted levels of hormones associated with the stress response based on changes in pulse and stress perception before and after stress reduction techniques. The class of 15 was divided so that each student collected her own data for one activity and used data that was provided for the other. Survey results indicate that 14 out of 15 students prefer collecting data on themselves, suggesting that data collection from self is an effective strategy to engage students. Whichever group used self data showed a greater increase in the average percentages of correct quiz responses after the activity. The average percentage of correct responses (out of 10) increased after the basal body temperature activity from 54% to 72% (p, The 2012 President’s Council of Advisors on Science and Technology (PCAST) report highlighted the growing issue of persistence of STEM majors and encouraged significant change. In an effort to understand the factors which affect STEM retention at Viterbo University, three years ago, an internal study showed the strongest indicator of student success in the freshman year (defined as grades of C or higher) in math/science courses is high school grade point average (HS GPA). Specifically, in General Chemistry I, 80% of students who achieved less than a C had a HS GPA below 3.3. In contrast, only 30% of students who received a C had a HS GPA below 3.3, and none of the students who received a grade higher than C had a HS GPA below 3.3. This past fall, after integrating several active learning initiatives in the STEM curriculum, we returned to the General Chemistry classroom to examine indicators of student success in the first year. We hypothesized that academic performance would still be a key indicator of student success, but we also hypothesized that student attitudes would be critical components in student success. Pair-wise correlations revealed that many of the survey attitudes (measured by the Motivated Strategies for Learning Questionnaire (MSLQ), a validated survey on student learning and motivation) and measures of student success were correlated. This suggests that the final grade in the class is positively correlated with several of the attitudes measured. While multiple testing raises concerns about false-positives, these factors, in addition to others, are included in the best multiple linear regression model to predict final grade. However, the strong colinearity of the attitudes makes identification of which attitudes in particular influence student success difficult. This colinearity was confirmed using a principal components analysis that a substantial proportion of variance in all measured attributes can be accounted for in a single principal component. In addition, this component is strongly correlated with final grade, suggesting that much of the variance can be explained by the fact that strong students score highly on all measured attributes. Future work will use these achievement and attitude measures as baseline data and see how changes to the pedagogy affect these values. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Teaching approaches, Evidence that active and inquiry learning increase student retention and critical thinking skills is conclusive, yet many undergraduate students protest against shifts in pedagogy because it is more work for them than lectures and exams. Engaging students’ interest so that they value investing time and effort in learning is as important as incorporating active and inquiry learning in courses. I tested whether including creative nonfiction books in one-semester majors microbiology courses would promote student engagement, supplementing Brock Biology of Microorganisms with Sachs’ Good Germs, Bad Germs, which chronicles the development of the hygiene hypothesis and the growing antibiotic resistance threat, and Ben-Barak’s The Invisible Kingdom, highly humorous essays on the manifold capabilities of microbes. We discussed how these popular reading assignments related to content throughout the course. I predicted that reading less content-dense creative nonfiction would increase student interest in learning microbiology because it emphasizes how microbes impact people’s lives and tells stories about working microbiologists in a suspenseful way. Contrary to my hypothesis, 76% of students in spring 2012 and spring 2014 microbiology courses at Sierra Nevada College reported on end-of-term surveys that they found the popular books less valuable for the course than the text, homework, and exam review materials. Students’ free comments suggested that the majority still valued course assignments based on how directly they helped them prepare for exams, although non-exam assessments contributed at least 54% to the course grade. A few students commented that Good Germs, Bad Germs and The Invisible Kingdom were interesting and helped them see applications for microbiology and 5% of students valued them more than the text, commenting that the text was too hard to understand. Although free comments are subject to interpretation and the total sample size was just 21 students, I conclude that creative nonfiction reading assignments do not increase engagement for the majority of undergraduates. ASM Curriculum Guideline Concept(s): Systems, Impact of microorganisms Pedagogical Category(ies): Teaching tools, Introduction: Quantitative polymerase chain reaction (qPCR) has become an essential and standard technique in molecular biology research laboratories. In 2012, we reasoned it would be fitting to incorporate a qPCR laboratory module into a mandatory sophomore Genetics course, providing every Biology/Biochemistry/Environmental Science major with hands-on qPCR experience. For undergraduates, performing qPCR simply requires micropipetting proficiency; conceptual understanding is the difficult hurdle. Methods: Across three years, we developed and tested three versions of a structured inquiry lab exercise. The exercises introduce students to the concept, purpose, and performance of qPCR technology and use: 1) three target genes, inflammation as a model system, and comparison of tissue culture cells treated with five different inflammation-inducing treatments; 2) one target gene, inflammation, and five treatments; or 3) one target gene, cancer as a model system, and comparison of primary and immortalized cells. We developed 1) a pre-/posttest to gauge student knowledge and understanding at the onset/conclusion of the module and 2) a set of open-ended postlab discussion questions. Hypothesis: We hypothesized the third iteration, placing qPCR in the context of cancer and telomerase, would be most successful. Results: In all iterations, scores were significantly higher on posttests. Pretest and posttest scores were highest in the third version. All assessment scores increased from the first to the third iteration, and instructors reported greatest student engagement in the third version. Conclusion: Data analysis after Year 1 suggested analyzing three target genes interfered with comprehension. Accordingly, we reduced to analysis of one target gene. Student difficulties persisted, indicating challenges with cell treatments and inflammation. We shifted to a more straightforward focus on cancer, uncontrolled cell growth, and telomerase, reasoning it also might hold more student interest. Improvements in assessment test scores indicate our modifications have resulted in a refined module that enhances student learning and understanding of qPCR. ASM Curriculum Guideline Concept(s): Pathways, Advancing STEM education and research Pedagogical Category(ies): Hands-on projects, Student learning, Since 1942, all students graduating from Allegheny College have been required to complete a junior seminar and a senior research project. As of 1999, all students have also been required to complete three writing and speaking classes during their first two years. The first two, taken in the first year, are interdisciplinary; a third, taken in the second year, is disciplinary in nature. Coincident with the revision of the college curriculum, the Biology Department completed a self-study and external review which revealed that both faculty and students were dissatisfied with our three-semester lecture and lab introductory series. Consequently, laboratories were dropped from the first two courses, and the third course was reworked as a version of the sophomore-level writing and speaking class, emphasizing experimental design, research methods, analysis and interpretation of data, and written and oral communication. To provide students with experiences in different biological subdisciplines, the course is modular in format, with each module focused on an instructor-specific research question that provides students with an opportunity to develop research projects. The final products of each module are a research presentation and a primary literature–style paper. We hypothesized that this course would provide students with authentic research experiences and facilitate their understanding of writing and speaking in the discipline. Two mechanisms of assessment were used to determine whether our hypothesis was supported. We used a multi-year, Likert-scale attitude survey, where, for example, over 85% of the students rated the course a 4 or 5 for their learning gains in presenting data in journal article format. We also used the nationally recognized classroom undergraduate research experience (CURE) survey; our students’ self-reported gains in categories such as ability to read and understand scientific literature and skill in science writing exceeded those of the “all students” comparison group, which includes participants in summer research. Thus, the course provides an authentic research experience that simultaneously enhances the students’ writing and speaking skills. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Course design, Too often in a predetermined or “cookbook” laboratory, students do not make the connection between experiential methods, the concepts behind these methods, and the application of these methods to different situations. This semester-long laboratory exercise was designed to provide students with an inquiry-based or classroom undergraduate research experience (CURE) laboratory project that incorporates commonly used microbiological lab concepts and techniques and to see whether this type of laboratory could be used to enhance student learning and understanding of these concepts and techniques. The theme of this lab project is centered on plant-microbe interactions. Plant growth–promoting bacteria (PGPR) found in the rhizosphere can easily be isolated from plant roots using a defined selective media. Students learn and use standard microbiological techniques, such as serial dilution and enumeration, selective and differential media, staining, biochemical testing, 16S rDNA bacterial identification, record keeping and data analysis, characterization and identification of their bacterial isolates. Students also test their isolates for plant growth promotion, auxin production, phosphate solubilization, fungal inhibition and antibiotic resistance profile, and analysis of their data and the entire class data (class size is 75 to 90 students). A Student Assessment of their Learning Gains (SALG) survey (www.salgsite.org) was distributed to students in three consecutive fall semesters to assess their learning gains of the various concepts and techniques learned in laboratory and lecture. Student-perceived learning gains of this lab project were very positive. With 5.0 being the greatest gain and 4.0 being a good gain, all but one of the mean gains for the three semesters combined was greater than 4.0. For example, the mean gain for the students’ understanding of bacterial isolation and serial dilution was 4.4, the mean gain for bacterial identification was 4.4, the mean gain for aseptic technique was 4.6, the mean gain for notebook and record keeping was 4.3 and the mean gain for data analysis was 4.2. The only gain which was less than 4.0 was the mean gain of 3.9 for selective and differential media. Using the cross tabulation tool on the SALG website to compare learning gains of concepts with learning gains for techniques, again, most of the cross tabulations ended up in the good gain and great gain blocks. These data clearly confirm that students can learn important laboratory techniques in an inquiry-based or CURE type lab and maybe have a better understanding of how to apply the concepts that they have learned. Student comments also support this idea. For example, students were asked to comment on how their understanding of the subject has changed, what skills they have gained, and how their attitude toward the subject has changed. Some of these comments were the following: “It helped me piece the lecture material and lab material together to better understand why we are learning what we are in lecture.” “I feel that I now have a deeper understanding of the procedures talked about in lecture.” “I have grown to understand the necessity of a well-organized and thorough notebook when performing research.” “Throughout lab, I feel as though I have successfully understood and applied skills learned. I have a better understanding of how to perform serial dilutions, a concept first introduced some time ago. I also feel confident in my aseptic technique, a skill that will help with future work.” “I understand and can apply different media depending on what bacteria are being isolated.” “I understand how to analyze the data observed.” “I liked that we were able to use a real-life scenario in order to learn microbiology.” “This class has increased my interest in microbiology and I am looking into doing a student research project involving what I learned.” “I had a lot of fun with this lab. I enjoyed the one ultimate goal vs. other labs I have had with lots of small goals in mind; it helped me focus on what was really happening.” Comparing attendance from the year before this lab was done with the first year the lab was done, there was a 3% decrease in the number of students missing two or more labs during the semester and a 4% decrease in the number of students missing one lab session. There are no survey data for attendance, so no definitive conclusions can be drawn from this attendance data, but a number of students commented that they wanted to come to lab each week to work on their bacterium. Student ownership and involvement with their isolation and characterization project has also led to interested students using their isolates in undergraduate research projects, something which would not usually result from a traditional lab. Over the past four years there have been nine students who completed research projects using the PGPR. Also, interesting isolates are used by the students in subsequent courses, Molecular Biology and Virology. The ability to do this reinforces the idea for the students that science is an ongoing project not just a once-and-done type laboratory. The data collected using the SALG survey support the use and development of inquiry-based labs for microbiology students. Not only are the students able to connect concepts with techniques in these labs, they also help keep the lab exercises current, stimulating, and challenging for the students and the instructors. ASM Curriculum Guideline Concept(s): Impact of microorganisms, Advancing STEM education and research Pedagogical Category(ies): Course design, Students often rely on rote study methods when preparing for exams. Conversely, exams at the college level and above stress higher-order cognitive thinking skills. To address this disconnect, students in an intermediate-level neuroscience course were provided with individually tailored, detailed exam feedback highlighting student performance on each level of Bloom’s taxonomy. This feedback, accompanied by a presentation of Bloom’s taxonomy and specific study suggestions for each of its levels, was provided to the students in hopes that their exam performance on higher-order exam questions would improve. To assess the effects of this intervention, exam results from the semester with the intervention (2014) were compared with exam results from the previous year’s course (2013) without the intervention (mixed-design ANOVA, post-hoc t-tests with Bonferroni correction). In both years, students increased their exam performance throughout the semester. Students’ performance on higher-order questions improved more throughout the semester in 2014 compared with 2013 (p, Active learning promotes student engagement, increases learning gains, enhances long-term retention, and enables development of higher-order thinking skills. This study examined the efficacy of active learning in graduate and medical school classroom-based (lacking a lab) courses. It stemmed from a prior observation that students perform poorly on exam questions requiring an understanding of lab-based techniques, a topic previously taught by didactic lecture. To investigate the hypothesis that active learning leads to greater learning gains than lecture, a flipped-classroom approach was implemented for this topic since these courses lack a lab component. Students wrote and performed skits based on clinical scenarios for which techniques are used for diagnosis and treatment. This approach was selected to demonstrate real-world relevance and applications. Student learning was quantitatively assessed by multiple-choice questions (MCQs). Data were analyzed using paired t-test; differences were significant. Masters student performance on multiple choice questions (MCQs) for this topic ranged from 77% to 100% and averaged 86% versus a 72% average for MCQs based on material taught by lecture. Medical student performance on MCQs for this topic ranged from 74% to 99% and averaged 90% versus a 76% average for MCQs based on material taught by lecture. Student attitudes toward active learning were assessed by an optional, anonymous survey and a required reflection. Masters students’ survey responses and free-response reflections supported their positive attitudes toward engagement in active learning. Medical students’ survey responses and free-response reflections were mixed, ranging from strongly positive to strongly negative, indicating their perceptions of learning strategy efficacy are not necessarily aligned with empirical data. From these data, I conclude that, within this context, active learning is more effective than lecture-based approaches. These data contribute to the research indicating that active learning leads to increased learning gains and support active learning approaches as effective, empirically validated teaching practices. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Teaching approaches, Rapid developments in DNA sequencing technology continue to advance microbiology, creating opportunities for the next generation of scientists. We developed the Urban Barcode Research Program (UBRP) to engage high school students to study biodiversity in New York City (NYC) using DNA technology. The UBRP supports independent, student-driven research, spanning study design, sample collection, DNA extraction, sequencing, analysis, and scientific communication. We hypothesized that having high school students work with a scientist would increase their ability to conduct science, and the experience would be comparable with an undergraduate student research experience. We evaluated the UBRP using mixed methods, including the validated Survey of Undergraduate Research Experiences (SURE-III) to measure changes in attitudes towards STEM studies and careers and learning gains around the scientific process, ranging from lab skills to academic, cognitive, and attitudinal aspects. Qualitative data included free-text survey responses, semi-structured interviews and project artifacts and will be presented in more detail at the conference. In year 1, 42 students (50% underrepresented minorities) worked with 18 scientists at 11 NYC institutions. Postsurvey data showed that for the majority (90.6%, n=35), the UBRP influenced them to continue research. Comparing the SURE-III results with reference college-level data (n≤2762) showed UBRP student learning gains were either equivalent (12 of 21 items) or higher (6 of 21), with highest gains for laboratory techniques (4.15 UBRP vs. 3.80 college students on a 5-point Likert scale of 1=no gain to 5=very large gain) and understanding how scientists work on real problems (3.94 vs. 3.51). Interestingly, students in our Urban Barcode Program (UBP; n=196), mentored by science teachers, not scientists, showed equivalent college-level learning gains in only 3 of the 21 items. These data support both our hypotheses: having high school students work with a scientist increases their ability to conduct science and provides a comparable college-level experience. ASM Curriculum Guideline Concept(s): Impact of microorganisms, Advancing STEM education and research Pedagogical Category(ies): Hands-on projects, Student learning, College students often have difficulty mastering the language required in a general biology course, and the use of science terminology may interfere with their ability to learn difficult concepts. I tested the hypothesis that students are more likely to learn concepts when they are first introduced using plain, everyday language rather than scientific terminology. I did this through a comparative approach in a General Biology (nonmajors) course at Berkeley City College. I taught two sections of material: understanding experimental design and introductory genetics. Each section was taught using scientific terminology one semester and plain language the other semester. Students were assessed using a pre-/posttest directly before and after the section was taught; learning gains were compared across the two groups. Students’ ability to understand scientific experimentation was assessed using the Expanded Experimental Design Ability Test (E-EDAT). This test is reported to be content and terminology independent, making it suitable for this study. Two homomorphic questions were used as pre- and post- assessments. Two people assessed student responses using the rubric associated with the E-EDAT. A Pearson’s correlation showed a 74% correlation between the two raters for the pretest and an 82% correlation between the two raters for the posttest. The learning gains for the E-EDAT for students taught in everyday language were greater (mean 3.6) compared with students taught using scientific terminology (mean 2.0) using a t-test (p, “Active learning” can include low-stakes problem-solving exercises to illustrate and/or reinforce concepts. Previous studies investigating similar approaches have repeatedly shown improved short-term and long-term retention. We instituted active learning, including individual and group problem-solving, mini-projects undertaken outside of class, and short quizzes in class and/or online, in fall 2011 in a junior-level undergraduate microbiology class for molecular biosciences (biochemistry/biophysics, genetics and cell biology, and microbiology) majors and pre-professional students. Active learning was worth 8% of the course grade. We hypothesized that active learning would improve grades in our course, and that greater concept retention would improve grades in subsequent microbiology coursework. “Control” groups included students enrolled from fall 2009 to spring 2011, and “experimental” groups included students enrolled from fall 2011 to the present. Among microbiology majors, course grades improved (2.50 vs. 2.12 on a 4-point scale), and the rate of student failure (grades of C- and below) decreased (26% [n=31] vs. 36% [n=33]). Variability was observed in later coursework, with improvements in medical microbiology (2.98 vs. 2.59) but declines in immunology and microbial physiology (2.74 vs. 2.99 and 2.7 vs. 3.17, respectively). Average grades for the four courses analyzed improved after active learning (2.69 vs. 2.40). To improve statistical power and to gain better insight into learning outcomes, we are currently comparing course grades among all molecular biosciences majors. Our results have implications for the use and potential improvement of active learning exercises within our course and may inform us about longer-term outcomes for students in our undergraduate degree programs. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Teaching approaches, Recognizing the importance of introducing research experiences throughout the undergraduate curriculum, the Boston College Biology Department designed an introductory laboratory course that immerses students in a semester-long research investigation in functional genomics. Rather than using the traditional format that pairs one-credit laboratory courses with lecture courses, the class adopted the format of an advanced lab course, meeting twice weekly for three hours. We hypothesized that the course would improve students’ understanding of core biological concepts and research methods skills, including the ability to design experiments, find information in online databases, understand the primary literature, and effectively communicate experimental results. We also hypothesized that student-generated results could add to the science knowledge base. For their project, students study the conservation of the enzymes involved in methionine biosynthesis between Saccharomyces cerevisiae and Schizosaccharomyces pombe, members of the Ascomycota separated from a common ancestor by ∼1 billion years. Student learning is assessed with lab notebooks, prelab quizzes, oral and poster presentations, database assignments, and five “micro-reports” that are compiled into a final report written in the style of a scientific publication. Students also perform an in-depth study of a research publication broken into segments, using a modification of the CREATE process. Pretest/posttest analyses indicated statistically and practically significant growth in both objectively-measured content knowledge and self-reported research methods skills. Student research results have also demonstrated the functional conservation of several enzymes involved in sulfur assimilation between S. cerevisiae and S. pombe. These scientific results are being prepared for a research publication. ASM Curriculum Guideline Concept(s): Evolution, Pathways Pedagogical Category(ies): Course design, This study details the assessment of a novel, year-long, research-based, major core laboratory curriculum completed by biology majors at Pace and LaSalle Universities during the 2013–2014 academic year. In the first semester, students conducted and analyzed microarray data to study the effects of osmotic stress on the yeast transcriptome. Students generated hypotheses on the roles of various affected genes. The following semester, students cloned candidate genes and designed and conducted cell-based functional assays using knockout yeast and overexpression studies to test their original hypotheses. We hypothesized that the year-long program would enhance the students’ biological literacy skills and their aptitude and appreciation for the process and practice of science. To assess this, we administered two validated concept inventories (CI) in a pre- and posttest format. We compared student performance on the CI to the course grades the students earned. Next, the students took the ETS Major Field Test in Biology (MFT). The scores earned on the MFT were compared between students that had and had not taken the year-long program. Finally, the students participated in the classroom undergraduate research experience (CURE) survey to help us determine their perceptions of the impact of the program on their interest/aptitude for research. The CI/course grade analysis showed that the “weaker” students in the first semester made the greatest gains on the CI. They also performed just as well as the “stronger” students on the assignments in the second semester (n=16). The MFT results indicated that the difference between the molecular biology/molecular genetics assessment indicator (AI) score approached significance (p=0.0556, U=13.5, n=9) where the students who took the year-long program performed better. Of the 22 questions about science on the CURE survey, the students indicated improved, statistically significant attitudes on 16 questions. These findings suggest that the program had several positive impacts on the students and we are hopeful that these observations will be strengthened upon inclusion of our 2014–2015 data. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Hands-on projects, Student learning, The American Association for the Advancement of Science report Vision and Change in Undergraduate Biology Education: A Call to Action outlined a set of core competencies and skills for the undergraduate biology curriculum, with an emphasis on student-centered learning. This study examines the early alignment efforts of a traditional biology department (41 full-time faculty, 1200 majors) at a mid-sized undergraduate institution (20,500 students). Change was driven by institutional support and external accreditation processes. A mixed method approach was used to evaluate student outcomes with respect to Vision and Change core concepts and competencies, employing summative assessment tools at programmatic milestones. Preliminary analysis examined data collected over three years. Most student learning outcomes showed modest learning gains for core concepts (0.02–0.25, n=299) during a three-course introductory sequence as determined by a validated biology concept inventory administered to three cohorts. One cohort of graduating seniors (n=117) also completed the Major Fields Test on a voluntary basis; the mean percent correct for areas overlapping with Vision and Change core concepts ranged from 29% to 51%. In addition, capstone research projects and presentations for six cohorts were evaluated using a tool that covered five of the six Vision and Change competency areas; aggregate scores ranged from 3.1 to 3.6 on a scale of 1 (novice) to 4 (mastery). Overall, the alignment and evaluation processes provided a baseline for moving forward and highlighted areas for improvement in the curriculum, evaluation plan, and assessment tools. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Student learning, Previous studies show many students have misconceptions regarding key molecular biology concepts. To achieve better student learning and retention, in-class collaborative activities might be a way to improve student understanding of a difficult yet fundamental molecular biology concept. We hypothesize collaborative learning activities may improve the common misconception regarding the concept that, “information in a gene directs expression of a specific protein.” To test this, the specific concept was taught in both a traditional lecture class and a collaborative learning activity-based class where small groups of students worked on five instructor-developed critical thinking activities relevant to the concept. The activities were designed for students to apply the concept they read in the assigned pre-reading. The students worked together to complete each specific activity and the instructor went over the activity in class and provided answers. Student learning was assessed using eight pre-/postquiz questions, an embedded four-part final exam question, and eight student interviews. A two-sample test was used to statistically compare results from the pre-/postquizzes and final exam. The proportion of students who correctly answered the questions on the postquiz from the collaborative learning class was higher than the traditional class in five of the eight questions, but these results were not statistically significant (p>0.05). The average learning gains from the collaborative learning class (56.74±4.46) were higher than the traditional class (45.25±8.17), but the difference was not statistically significant (p>0.05). The collaborative learning class had a statistically significant higher average score in two of the four parts of the embedded final exam question (p, The Small World Initiative (SWI), founded in 2013 by Jo Handelsman at Yale University, provides an exciting model for reforming the introductory biology laboratory by engaging students in an authentic, semester-long research project based on antibiotic discovery from soil bacteria. The research addresses the compelling global challenge of an inadequate pipeline of new antibiotics in the face of increasing antibiotic resistance among human pathogens. Our overarching goal in implementing this model at the University of Pittsburgh has been to transform the quality of the student experience in our very large introductory biology lab course by capturing the excitement of scientific discovery. We hypothesize that many students who do not persist in biology-related majors despite their strong interest in the field at college entry are driven away by an uninspiring curriculum, which they perceive as a lot of work without much reward. We further hypothesize that the authentic research experience exemplified by the Small World Initiative engages students to a high degree, leading to increased persistence by these students in science majors. We designed the course with emphasis on the development of students’ science process skills and have included features intended to bolster student ownership and drive student enthusiasm across the semester. The Project Ownership Survey (POS) developed by David Hanauer was administered to these students (n=13) and to students in a traditional, non research–based lab (n=33). Students rated their level of agreement with statements such as “My research will help solve a problem in the world,” “I had a personal reason for choosing the research project I worked on,” and “The word ‘happy’ describes my experience of the lab course.” We found a significant difference between students’ mean ratings, with Small World Initiative students rating their level of agreement with statements ∼70% higher than students in the traditional lab. We conclude that the Small World Initiative curriculum effectively promotes ownership and engagement. ASM Curriculum Guideline Concept(s): Impact of microorganisms, Advancing STEM education and research Pedagogical Category(ies): Course design, To enhance active learning, a guided enquiry–based lab was implemented in a microbiology course at Washington & Jefferson College. Over 10 weeks, students (n=20) characterized bacterial diversity using culture-dependent and culture-independent methods. Students crafted the study question, proposed a hypothesis, collected and analyzed data, and inferred conclusions. It was hypothesized that such a lab would improve students’ attitudes toward science and increase experimental design, data analysis, and scientific writing abilities. Experimental design ability was assessed using the Experimental Design Ability Test (EDAT; Sirum et al. 2013) administered at the beginning and end of the course. Mean EDAT scores significantly increased (pre-EDAT=3.7; post-EDAT=6.2; paired t-test, p=2.73×10−5). Ability to interpret data was assessed using Ability for Data Analysis Test (ADAT; Sirum et al. 2013) administered at the beginning and end of the course. Mean ADAT scores remained the same (pre-ADAT=4.15; post-ADAT=4.3; paired t-test, p=0.59). Data analysis ability was also assessed using an instructor-designed graph interpretation question. These scores also remained the same (pretest=66.7%; posttest=66.9%; paired t-test, p=0.98), showing no gain in data analysis ability. Students’ attitudes to science, open-ended labs, and scientific writing were surveyed before and at the end of the course with 22 questions based on the Likert scale. The survey showed that students’ confidence in executing biology lab-based tasks increased modestly (pretest=3.65; posttest=4; paired t-test, p=0.02), whereas attitudes toward science remained the same (pre-test=3.61; posttest=3.42; paired t-test, p=0.10). Affinity for open-ended labs increased (pretest=3.73; posttest=4.07; paired t-test, p=0.005) and confidence in scientific writing increased (pretest=2.9; posttest=3.9; paired t-test, p=0.0001). These data show increase in experimental design ability and improved confidence in science and scientific writing. They also reveal gaps in attitudes and competencies that should be considered for future iterations. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Hands-on projects, Student learning, Although it is widely accepted that active-learning pedagogy bolsters student learning and engagement in college-level biology courses, little is known about how students perceive the academic rigor in these courses. As faculty strive to adopt active learning pedagogy while meeting institutional benchmarks associated with academic rigor, we ask what it means for a course to be “rigorous” from a student perspective? How do students define the attributes that make a learning experience “easy” or “hard”? To answer these questions, we administered an end-of-semester survey to 120 students enrolled in 100-and 300-level active-learning biology courses. Results from their open-ended responses were coded for patterns by two raters with established inter-rater reliability. We compared distributions between the courses using Chi-square and discovered that students perceived active-learning classes as both “hard” and “easy” due to increased cognitive demand coupled with peer and instructor support. Students defined active-learning courses as easy due to the format of the learning (e.g., workload seems manageable, content is logical and easy to follow, strong alignment between instruction and assessment, and high degree of faculty support). Simultaneously, students defined active learning as hard because they may not have entered the course with appropriate background knowledge and/or skills, and they find the cognitive demands of these courses to be difficult; patterns did not differ among courses (Chi-square, p=0.5, Cramer’s V=0.116). Results show that active-learning courses, although often perceived and communicated as “easy” by students, are also seen as academically rigorous due to increased cognitive demand. Students recognize they are being asked to do more higher-order thinking, yet find the intrinsically student-centered nature of active learning helps them overcome the challenges associated with course difficulty. These findings highlight the importance of being aware of and responding to student perceptions of academic rigor as we continue to implement national calls for reform in undergraduate biology. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Student learning, Students come to college with a significant amount of prior knowledge which often includes misconceptions that hinder their ability to learn correct concepts in STEM disciplines. Misconceptions, or “alternative beliefs” amongst students have been widely studied in the literature (Nakhleh 1992; Kind 2004) and it is observed that when they are challenged directly and students are provided with opportunities to re-construct their worldview, the proportion of students able to use scientific concepts increases significantly (Fisher and Wandersee 2001), indicating that clearing misconceptions early on is crucial to student learning. Our study aims to identify and resolve misconceptions in three important gateway STEM courses by using student reflective activities and guided-inquiry learning. Faculty members teaching three STEM courses, Biology, Chemistry, and Mathematics, are working to identify and address common misconceptions that prevent students from being successful in these courses. These are gateway courses with considerably high attrition rates. To enhance conceptual understanding and the learning process, instructors conduct reflection sessions outside classroom instruction to specifically address students’ alternative beliefs in order to foster conceptual understanding of course material rather than rote memorization. During pilot implementation last semester (fall 2014), students reflected on their own prior knowledge and belief systems and worked with peers to discover the correct concepts. They analyzed each other’s erroneous beliefs and, in the process, recognized and corrected their misconceptions. We saw a marginal difference between experimental and control groups last semester. However, we are redesigning and refining the intervention sessions of reflections, the exam wrappers, and the study skills/attitude surveys this semester to collect more meaningful data to assess whether resolving misconceptions early on will increase conceptual understanding in community college students. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Student learning, Teaching approaches, Teaching tools, As the United States becomes an increasingly diverse society, it is essential that students be provided with role models that include minorities. To that end, we are continuing a project to develop and test inquiry-based approaches for undergraduates that focus on the life and work of minority scientists who have made significant contributions to the field of biology. Our efforts have most recently concentrated on Lydia Villa-Komaroff, a pioneering Hispanic biotechnologist. In 1978, she led the research team that first transformed bacteria to produce human insulin. We hypothesized that the use of these activities would increase the students’ appreciation for this scientist’s work as well as improve their comprehension of the science behind the discoveries that she made. Exercises were developed for a General Microbiology and a nonmajors Biology course. Student teams in both courses employed an inquiry-based, collaborative approach whereby they constructed a timeline of Villa-Komaroff’s life and career using references provided by the instructor. Students in the General Microbiology course subsequently conducted a transformation lab exercise using procedures similar to those developed by Villa-Komaroff and her colleagues. The nonmajors biology students extracted DNA from eukaryotic cells to model the first steps that Villa-Komaroff’s team took to transform the bacteria. A pre- and posttest, designed to measure the students’ comprehension of basic concepts important to the project as well as overall course goals, was given to students in both courses. Comparisons of pre- and posttests given to students in the General Microbiology course showed that test scores improved from a mean of 42% on the pretest to 58% on the posttest. Test results for the nonmajors biology course improved from a mean of 40% on the pretest to 59% on the posttest. In conclusion, this approach is a viable, inquiry-based alternative to traditional methods of teaching to help undergraduates understand the important contributions minority scientists have made to the field of biology. ASM Curriculum Guideline Concept(s): Information flow, Advancing STEM education and research Pedagogical Category(ies): Hands-on projects, The economic changes that have taken place worldwide have created a high demand for college graduates in the fields of science, technology, engineering, and mathematics, also collectively known as STEM. This increased demand has led to numerous think tanks, policies, and programs investigating how these numbers can be increased across all disciplines in STEM. One of the overwhelming findings is that the STEM fields lack diversity. Statistics show that the number of Blacks earning bachelor’s degrees in STEM fields has increased, but at a slower pace than in non-STEM fields (NSF, 2011). The hypothesis for this study is that creation of an organization that encourages and provides academic and professional support for basic science research along with mentoring will help black males develop the desire to matriculate through undergraduate and graduate degrees in STEM fields. Black male students in STEM fields met at least once a month outside of regular class meetings to discuss academics, pitfalls, and also any concerns with their progress in their field of study. In addition to monthly meetings, students were voluntarily asked to complete a Students Individual Development Plan (IDP), which asks the student to target new goals and expectations. To track progress of implementation of this plan, grades were calculated and tracked at the end of each semester and compared with other disciplines outside of STEM. The data showed a significant increase (p, This study examined the efficacy of project-based learning (PTBL) in an undergraduate neurobiology course to improve attitudes and increase confidence toward neuroscience content and improve critical thinking skills. Students are often interested in learning about diseased states of the nervous system but can be discouraged by having to learn the chemical and cellular mechanisms underlying the pathologies. Thus, it can be a challenge to provide students with significant learning experiences that they are excited about. I hypothesized that PTBL would 1) improve critical and integrative thinking skills; 2) build confidence in understanding neuroscience and promote positive attitudes toward neuroscience; and 3) increase understanding of neuroscience concepts. To test these hypotheses, students were grouped into teams and completed three substantial projects consisting of team-authored research papers and poster presentations. Rubrics measured learning gains in ability to address specific project goals (Goals), provide evidence from a variety of valid resources (Resources), make logical, supported statements (Thinking), and analyze and synthesize ideas and concepts (Integration). Preand postsurveys assessed attitudes toward neuroscience, teams and projects, and understanding of neuroscience concepts. Pre- and posttests measured knowledge of neuroscience content. Analysis of papers revealed significant increases in research, thinking, and integrative skills (p< 0.05). By the end of the course, students reported significantly higher confidence in neuroscience knowledge (p=0.004). However, there was no change in attitudes toward neuroscience, working in a team or on projects. Students answered more questions correctly on the neuroscience content posttest than the pretest (p=0.036), and, as student attitudes toward neuroscience improved, so did their ability to correctly answer content questions (p=0.013). PTBL is an effective tool that educators can use to actively engage students while enhancing critical thinking skills and content knowledge in undergraduate biology courses. ASM Curriculum Guideline Concept(s): Advancing STEM education and research Pedagogical Category(ies): Hands-on projects

Deep-water agglutinated foraminifera on the crest of the Hovgaard Ridge, west of Spitsbergen, consist mostly of large tubular astrorhizids. At a boxcore station collected from the crest of Hovgaard Ridge at a water depth of 1169 m, the sediment surface was covered with patches of large (1 mm diameter) tubular forms, be longing mostly to the species Astrorhiza crassatina Brady, with smaller numbers of Saccorhiza, Hyperammina, and Psammosiphonella. Non-tubular species consisted mainly of opportunistic forms, such as Psammosphaera and Reophax. The presence of large suspension-feeding tubular genera as well as opportunistic forms point to the presence of deep currents at this locality that are strong enough to disturb the benthic fauna. This is confirmed by data obtained from sediment echosounding, which exhibit lateral variation in relative sedimentation rates within the Pleistocene sedimentary drape covering the ridge, in dicative of winnowing in a south-easterly direction.