970 results on '"Zouni, A."'
Search Results
2. Going around the Kok cycle of the water oxidation reaction with femtosecond X-ray crystallography
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Bhowmick, Asmit, Simon, Philipp S, Bogacz, Isabel, Hussein, Rana, Zhang, Miao, Makita, Hiroki, Ibrahim, Mohamed, Chatterjee, Ruchira, Doyle, Margaret D, Cheah, Mun Hon, Chernev, Petko, Fuller, Franklin D, Fransson, Thomas, Alonso-Mori, Roberto, Brewster, Aaron S, Sauter, Nicholas K, Bergmann, Uwe, Dobbek, Holger, Zouni, Athina, Messinger, Johannes, Kern, Jan, Yachandra, Vittal K, and Yano, Junko
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Inorganic Chemistry ,Chemical Sciences ,photosystem II ,oxygen evolving complex ,manganese metalloenzymes ,water-oxidation ,water-splitting ,X-ray free-electron lasers ,X-ray spectroscopy ,Atomic ,Molecular ,Nuclear ,Particle and Plasma Physics ,Condensed Matter Physics ,Physical Chemistry (incl. Structural) ,Physical chemistry ,Condensed matter physics - Abstract
The water oxidation reaction in photosystem II (PS II) produces most of the molecular oxygen in the atmosphere, which sustains life on Earth, and in this process releases four electrons and four protons that drive the downstream process of CO2 fixation in the photosynthetic apparatus. The catalytic center of PS II is an oxygen-bridged Mn4Ca complex (Mn4CaO5) which is progressively oxidized upon the absorption of light by the chlorophyll of the PS II reaction center, and the accumulation of four oxidative equivalents in the catalytic center results in the oxidation of two waters to dioxygen in the last step. The recent emergence of X-ray free-electron lasers (XFELs) with intense femtosecond X-ray pulses has opened up opportunities to visualize this reaction in PS II as it proceeds through the catalytic cycle. In this review, we summarize our recent studies of the catalytic reaction in PS II by following the structural changes along the reaction pathway via room-temperature X-ray crystallography using XFELs. The evolution of the electron density changes at the Mn complex reveals notable structural changes, including the insertion of OX from a new water molecule, which disappears on completion of the reaction, implicating it in the O-O bond formation reaction. We were also able to follow the structural dynamics of the protein coordinating with the catalytic complex and of channels within the protein that are important for substrate and product transport, revealing well orchestrated conformational changes in response to the electronic changes at the Mn4Ca cluster.
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- 2023
3. Evolutionary diversity of proton and water channels on the oxidizing side of photosystem II and their relevance to function
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Hussein, Rana, Ibrahim, Mohamed, Bhowmick, Asmit, Simon, Philipp S, Bogacz, Isabel, Doyle, Margaret D, Dobbek, Holger, Zouni, Athina, Messinger, Johannes, Yachandra, Vittal K, Kern, Jan F, and Yano, Junko
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Plant Biology ,Biological Sciences ,Generic health relevance ,Protons ,Photosystem II Protein Complex ,Water ,Cryoelectron Microscopy ,Oxidation-Reduction ,Photosystem II ,Water oxidation ,Water transport ,Oxygen evolving complex ,Evolution ,Biochemistry and Cell Biology ,Genetics ,Plant Biology & Botany ,Biochemistry and cell biology ,Plant biology - Abstract
One of the reasons for the high efficiency and selectivity of biological catalysts arise from their ability to control the pathways of substrates and products using protein channels, and by modulating the transport in the channels using the interaction with the protein residues and the water/hydrogen-bonding network. This process is clearly demonstrated in Photosystem II (PS II), where its light-driven water oxidation reaction catalyzed by the Mn4CaO5 cluster occurs deep inside the protein complex and thus requires the transport of two water molecules to and four protons from the metal center to the bulk water. Based on the recent advances in structural studies of PS II from X-ray crystallography and cryo-electron microscopy, in this review we compare the channels that have been proposed to facilitate this mass transport in cyanobacteria, red and green algae, diatoms, and higher plants. The three major channels (O1, O4, and Cl1 channels) are present in all species investigated; however, some differences exist in the reported structures that arise from the different composition and arrangement of membrane extrinsic subunits between the species. Among the three channels, the Cl1 channel, including the proton gate, is the most conserved among all photosynthetic species. We also found at least one branch for the O1 channel in all organisms, extending all the way from Ca/O1 via the 'water wheel' to the lumen. However, the extending path after the water wheel varies between most species. The O4 channel is, like the Cl1 channel, highly conserved among all species while having different orientations at the end of the path near the bulk. The comparison suggests that the previously proposed functionality of the channels in T. vestitus (Ibrahim et al., Proc Natl Acad Sci USA 117:12624-12635, 2020; Hussein et al., Nat Commun 12:6531, 2021) is conserved through the species, i.e. the O1-like channel is used for substrate water intake, and the tighter Cl1 and O4 channels for proton release. The comparison does not eliminate the potential role of O4 channel as a water intake channel. However, the highly ordered hydrogen-bonded water wire connected to the Mn4CaO5 cluster via the O4 may strongly suggest that it functions in proton release, especially during the S0 → S1 transition (Saito et al., Nat Commun 6:8488, 2015; Kern et al., Nature 563:421-425, 2018; Ibrahim et al., Proc Natl Acad Sci USA 117:12624-12635, 2020; Sakashita et al., Phys Chem Chem Phys 22:15831-15841, 2020; Hussein et al., Nat Commun 12:6531, 2021).
- Published
- 2023
4. Towards understanding the crystallization of photosystem II: influence of poly(ethylene glycol) of various molecular sizes on the micelle formation of alkyl maltosides
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Müh, Frank, Bothe, Adrian, and Zouni, Athina
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- 2024
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5. Changes in Travel Behaviour Caused by COVID-19: The Case Study of Outbound Chinese Tourists
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Rapti, Evangelia, Zouni, Georgia, Maingi, Shem Wambugu, editor, Gowreesunkar, Vanessa GB, editor, and Korstanje, Maximiliano E, editor
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- 2024
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6. Structural evidence for intermediates during O2 formation in photosystem II
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Bhowmick, Asmit, Hussein, Rana, Bogacz, Isabel, Simon, Philipp S, Ibrahim, Mohamed, Chatterjee, Ruchira, Doyle, Margaret D, Cheah, Mun Hon, Fransson, Thomas, Chernev, Petko, Kim, In-Sik, Makita, Hiroki, Dasgupta, Medhanjali, Kaminsky, Corey J, Zhang, Miao, Gätcke, Julia, Haupt, Stephanie, Nangca, Isabela I, Keable, Stephen M, Aydin, A Orkun, Tono, Kensuke, Owada, Shigeki, Gee, Leland B, Fuller, Franklin D, Batyuk, Alexander, Alonso-Mori, Roberto, Holton, James M, Paley, Daniel W, Moriarty, Nigel W, Mamedov, Fikret, Adams, Paul D, Brewster, Aaron S, Dobbek, Holger, Sauter, Nicholas K, Bergmann, Uwe, Zouni, Athina, Messinger, Johannes, Kern, Jan, Yano, Junko, and Yachandra, Vittal K
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Inorganic Chemistry ,Chemical Sciences ,Physical Sciences ,Oxidation-Reduction ,Oxygen ,Photosynthesis ,Photosystem II Protein Complex ,Protons ,Water ,Manganese ,Calcium ,Peroxides ,CSD-06-PS-A ,CSD-46-All CSGB ,CSD-45-Featured ,General Science & Technology - Abstract
In natural photosynthesis, the light-driven splitting of water into electrons, protons and molecular oxygen forms the first step of the solar-to-chemical energy conversion process. The reaction takes place in photosystem II, where the Mn4CaO5 cluster first stores four oxidizing equivalents, the S0 to S4 intermediate states in the Kok cycle, sequentially generated by photochemical charge separations in the reaction center and then catalyzes the O-O bond formation chemistry1-3. Here, we report room temperature snapshots by serial femtosecond X-ray crystallography to provide structural insights into the final reaction step of Kok's photosynthetic water oxidation cycle, the S3→[S4]→S0 transition where O2 is formed and Kok's water oxidation clock is reset. Our data reveal a complex sequence of events, which occur over micro- to milliseconds, comprising changes at the Mn4CaO5 cluster, its ligands and water pathways as well as controlled proton release through the hydrogen-bonding network of the Cl1 channel. Importantly, the extra O atom Ox, which was introduced as a bridging ligand between Ca and Mn1 during the S2→S3 transition4-6, disappears or relocates in parallel with Yz reduction starting at approximately 700 μs after the third flash. The onset of O2 evolution, as indicated by the shortening of the Mn1-Mn4 distance, occurs at around 1,200 μs, signifying the presence of a reduced intermediate, possibly a bound peroxide.
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- 2023
7. Capturing the sequence of events during the water oxidation reaction in photosynthesis using XFELs
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Simon, Philipp S, Makita, Hiroki, Bogacz, Isabel, Fuller, Franklin, Bhowmick, Asmit, Hussein, Rana, Ibrahim, Mohamed, Zhang, Miao, Chatterjee, Ruchira, Cheah, Mun Hon, Chernev, Petko, Doyle, Margaret D, Brewster, Aaron S, Alonso‐Mori, Roberto, Sauter, Nicholas K, Bergmann, Uwe, Dobbek, Holger, Zouni, Athina, Messinger, Johannes, Kern, Jan, Yachandra, Vittal K, and Yano, Junko
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Plant Biology ,Biological Sciences ,Water ,Photosynthesis ,Oxidation-Reduction ,Photosystem II Protein Complex ,Lasers ,Oxygen ,manganese metalloenzymes ,oxygen evolving complex ,photosystem II ,water-oxidation ,splitting ,X-ray free-electron laser ,X-ray spectroscopy ,water-oxidation/splitting ,Medicinal and Biomolecular Chemistry ,Biochemistry and Cell Biology ,Evolutionary Biology ,Biochemistry & Molecular Biology ,Biochemistry and cell biology - Abstract
Ever since the discovery that Mn was required for oxygen evolution in plants by Pirson in 1937 and the period-four oscillation in flash-induced oxygen evolution by Joliot and Kok in the 1970s, understanding of this process has advanced enormously using state-of-the-art methods. The most recent in this series of innovative techniques was the introduction of X-ray free-electron lasers (XFELs) a decade ago, which led to another quantum leap in the understanding in this field, by enabling operando X-ray structural and X-ray spectroscopy studies at room temperature. This review summarizes the current understanding of the structure of Photosystem II (PS II) and its catalytic centre, the Mn4 CaO5 complex, in the intermediate Si (i = 0-4)-states of the Kok cycle, obtained using XFELs.
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- 2023
8. Going around the Kok cycle of the water oxidation reaction with femtosecond X-ray crystallography
- Author
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Asmit Bhowmick, Philipp S. Simon, Isabel Bogacz, Rana Hussein, Miao Zhang, Hiroki Makita, Mohamed Ibrahim, Ruchira Chatterjee, Margaret D. Doyle, Mun Hon Cheah, Petko Chernev, Franklin D. Fuller, Thomas Fransson, Roberto Alonso-Mori, Aaron S. Brewster, Nicolas K. Sauter, Uwe Bergmann, Holger Dobbek, Athina Zouni, Johannes Messinger, Jan Kern, Vittal K. Yachandra, and Junko Yano
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photosystem ii ,oxygen evolving complex ,manganese metalloenzymes ,water-oxidation ,water-splitting ,x-ray free-electron lasers ,x-ray spectroscopy ,Crystallography ,QD901-999 - Abstract
The water oxidation reaction in photosystem II (PS II) produces most of the molecular oxygen in the atmosphere, which sustains life on Earth, and in this process releases four electrons and four protons that drive the downstream process of CO2 fixation in the photosynthetic apparatus. The catalytic center of PS II is an oxygen-bridged Mn4Ca complex (Mn4CaO5) which is progressively oxidized upon the absorption of light by the chlorophyll of the PS II reaction center, and the accumulation of four oxidative equivalents in the catalytic center results in the oxidation of two waters to dioxygen in the last step. The recent emergence of X-ray free-electron lasers (XFELs) with intense femtosecond X-ray pulses has opened up opportunities to visualize this reaction in PS II as it proceeds through the catalytic cycle. In this review, we summarize our recent studies of the catalytic reaction in PS II by following the structural changes along the reaction pathway via room-temperature X-ray crystallography using XFELs. The evolution of the electron density changes at the Mn complex reveals notable structural changes, including the insertion of OX from a new water molecule, which disappears on completion of the reaction, implicating it in the O—O bond formation reaction. We were also able to follow the structural dynamics of the protein coordinating with the catalytic complex and of channels within the protein that are important for substrate and product transport, revealing well orchestrated conformational changes in response to the electronic changes at the Mn4Ca cluster.
- Published
- 2023
- Full Text
- View/download PDF
9. Effects of x-ray free-electron laser pulse intensity on the Mn Kβ1,3 x-ray emission spectrum in photosystem II—A case study for metalloprotein crystals and solutions
- Author
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Fransson, Thomas, Alonso-Mori, Roberto, Chatterjee, Ruchira, Cheah, Mun Hon, Ibrahim, Mohamed, Hussein, Rana, Zhang, Miao, Fuller, Franklin, Gul, Sheraz, Kim, In-Sik, Simon, Philipp S, Bogacz, Isabel, Makita, Hiroki, de Lichtenberg, Casper, Song, Sanghoon, Batyuk, Alexander, Sokaras, Dimosthenis, Massad, Ramzi, Doyle, Margaret, Britz, Alexander, Weninger, Clemens, Zouni, Athina, Messinger, Johannes, Yachandra, Vittal K, Yano, Junko, Kern, Jan, and Bergmann, Uwe
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Inorganic Chemistry ,Chemical Sciences ,Physical Sciences ,Physical chemistry ,Condensed matter physics ,Particle and high energy physics - Abstract
In the last ten years, x-ray free-electron lasers (XFELs) have been successfully employed to characterize metalloproteins at room temperature using various techniques including x-ray diffraction, scattering, and spectroscopy. The approach has been to outrun the radiation damage by using femtosecond (fs) x-ray pulses. An example of an important and damage sensitive active metal center is the Mn4CaO5 cluster in photosystem II (PS II), the catalytic site of photosynthetic water oxidation. The combination of serial femtosecond x-ray crystallography and Kβ x-ray emission spectroscopy (XES) has proven to be a powerful multimodal approach for simultaneously probing the overall protein structure and the electronic state of the Mn4CaO5 cluster throughout the catalytic (Kok) cycle. As the observed spectral changes in the Mn4CaO5 cluster are very subtle, it is critical to consider the potential effects of the intense XFEL pulses on the Kβ XES signal. We report here a systematic study of the effects of XFEL peak power, beam focus, and dose on the Mn Kβ1,3 XES spectra in PS II over a wide range of pulse parameters collected over seven different experimental runs using both microcrystal and solution PS II samples. Our findings show that for beam intensities ranging from ∼5 × 1015 to 5 × 1017 W/cm2 at a pulse length of ∼35 fs, the spectral effects are small compared to those observed between S-states in the Kok cycle. Our results provide a benchmark for other XFEL-based XES studies on metalloproteins, confirming the viability of this approach.
- Published
- 2021
10. Mn4Ca Cluster of the Water-oxidation Enzyme Studied by Polarized X-ray Spectroscopy of PS II Single Crystals
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Yachandra, VK, Yano, J, Kern, J, Sauer, K, Messinger, J, and Zouni, A
- Published
- 2021
11. Reply to Wang et al.: Clear evidence of binding of Ox to the oxygen-evolving complex of photosystem II is best observed in the omit map
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Ibrahim, Mohamed, Moriarty, Nigel W, Kern, Jan, Holton, James M, Brewster, Aaron S, Bhowmick, Asmit, Bergmann, Uwe, Zouni, Athina, Messinger, Johannes, Yachandra, Vittal K, Yano, Junko, Dobbek, Holger, Sauter, Nicholas K, and Adams, Paul D
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Biological Sciences ,Ecology ,Physical Sciences ,Good Health and Well Being ,Oxygen ,Photosystem II Protein Complex ,Spinacia oleracea ,Thylakoids - Published
- 2021
12. Photoelectrochemistry of a photosystem I – Ferredoxin construct on ITO electrodes
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Dörpholz, H., Subramanian, S., Zouni, A., and Lisdat, F.
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- 2023
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13. Room temperature XFEL crystallography reveals asymmetry in the vicinity of the two phylloquinones in photosystem I
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Keable, Stephen M, Kölsch, Adrian, Simon, Philipp S, Dasgupta, Medhanjali, Chatterjee, Ruchira, Subramanian, Senthil Kumar, Hussein, Rana, Ibrahim, Mohamed, Kim, In-Sik, Bogacz, Isabel, Makita, Hiroki, Pham, Cindy C, Fuller, Franklin D, Gul, Sheraz, Paley, Daniel, Lassalle, Louise, Sutherlin, Kyle D, Bhowmick, Asmit, Moriarty, Nigel W, Young, Iris D, Blaschke, Johannes P, de Lichtenberg, Casper, Chernev, Petko, Cheah, Mun Hon, Park, Sehan, Park, Gisu, Kim, Jangwoo, Lee, Sang Jae, Park, Jaehyun, Tono, Kensuke, Owada, Shigeki, Hunter, Mark S, Batyuk, Alexander, Oggenfuss, Roland, Sander, Mathias, Zerdane, Serhane, Ozerov, Dmitry, Nass, Karol, Lemke, Henrik, Mankowsky, Roman, Brewster, Aaron S, Messinger, Johannes, Sauter, Nicholas K, Yachandra, Vittal K, Yano, Junko, Zouni, Athina, and Kern, Jan
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Physical Sciences ,Chemical Sciences ,Physical Chemistry ,Crystallography ,X-Ray ,Photosynthesis ,Photosystem I Protein Complex ,Protein Structure ,Tertiary ,Temperature ,Thermosynechococcus ,Vitamin K 1 - Abstract
Photosystem I (PS I) has a symmetric structure with two highly similar branches of pigments at the center that are involved in electron transfer, but shows very different efficiency along the two branches. We have determined the structure of cyanobacterial PS I at room temperature (RT) using femtosecond X-ray pulses from an X-ray free electron laser (XFEL) that shows a clear expansion of the entire protein complex in the direction of the membrane plane, when compared to previous cryogenic structures. This trend was observed by complementary datasets taken at multiple XFEL beamlines. In the RT structure of PS I, we also observe conformational differences between the two branches in the reaction center around the secondary electron acceptors A1A and A1B. The π-stacked Phe residues are rotated with a more parallel orientation in the A-branch and an almost perpendicular confirmation in the B-branch, and the symmetry breaking PsaB-Trp673 is tilted and further away from A1A. These changes increase the asymmetry between the branches and may provide insights into the preferential directionality of electron transfer.
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- 2021
14. Structural dynamics in the water and proton channels of photosystem II during the S2 to S3 transition
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Hussein, Rana, Ibrahim, Mohamed, Bhowmick, Asmit, Simon, Philipp S, Chatterjee, Ruchira, Lassalle, Louise, Doyle, Margaret, Bogacz, Isabel, Kim, In-Sik, Cheah, Mun Hon, Gul, Sheraz, de Lichtenberg, Casper, Chernev, Petko, Pham, Cindy C, Young, Iris D, Carbajo, Sergio, Fuller, Franklin D, Alonso-Mori, Roberto, Batyuk, Alex, Sutherlin, Kyle D, Brewster, Aaron S, Bolotovsky, Robert, Mendez, Derek, Holton, James M, Moriarty, Nigel W, Adams, Paul D, Bergmann, Uwe, Sauter, Nicholas K, Dobbek, Holger, Messinger, Johannes, Zouni, Athina, Kern, Jan, Yachandra, Vittal K, and Yano, Junko
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Physical Sciences ,Chemical Sciences ,Physical Chemistry ,Hydrogen Bonding ,Photosystem II Protein Complex ,Protons ,Water - Abstract
Light-driven oxidation of water to molecular oxygen is catalyzed by the oxygen-evolving complex (OEC) in Photosystem II (PS II). This multi-electron, multi-proton catalysis requires the transport of two water molecules to and four protons from the OEC. A high-resolution 1.89 Å structure obtained by averaging all the S states and refining the data of various time points during the S2 to S3 transition has provided better visualization of the potential pathways for substrate water insertion and proton release. Our results indicate that the O1 channel is the likely water intake pathway, and the Cl1 channel is the likely proton release pathway based on the structural rearrangements of water molecules and amino acid side chains along these channels. In particular in the Cl1 channel, we suggest that residue D1-E65 serves as a gate for proton transport by minimizing the back reaction. The results show that the water oxidation reaction at the OEC is well coordinated with the amino acid side chains and the H-bonding network over the entire length of the channels, which is essential in shuttling substrate waters and protons.
- Published
- 2021
15. Author Correction: Structural evidence for intermediates during O2 formation in photosystem II
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Bhowmick, Asmit, Hussein, Rana, Bogacz, Isabel, Simon, Philipp S., Ibrahim, Mohamed, Chatterjee, Ruchira, Doyle, Margaret D., Cheah, Mun Hon, Fransson, Thomas, Chernev, Petko, Kim, In-Sik, Makita, Hiroki, Dasgupta, Medhanjali, Kaminsky, Corey J., Zhang, Miao, Gätcke, Julia, Haupt, Stephanie, Nangca, Isabela I., Keable, Stephen M., Aydin, A. Orkun, Tono, Kensuke, Owada, Shigeki, Gee, Leland B., Fuller, Franklin D., Batyuk, Alexander, Alonso-Mori, Roberto, Holton, James M., Paley, Daniel W., Moriarty, Nigel W., Mamedov, Fikret, Adams, Paul D., Brewster, Aaron S., Dobbek, Holger, Sauter, Nicholas K., Bergmann, Uwe, Zouni, Athina, Messinger, Johannes, Kern, Jan, Yano, Junko, and Yachandra, Vittal K.
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- 2024
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16. Coupling of formate dehydrogenase to inverse-opal ITO-PSI electrodes for photocatalytic CO2 reduction
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Sascha Morlock, Matthias Schenderlein, Kenji Kano, Athina Zouni, and Fred Lisdat
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Photobioelectrodes ,Light energy conversion ,Carbon dioxide utilization ,Indium tin oxide ,Photosystem I ,Formate dehydrogenase ,Biotechnology ,TP248.13-248.65 - Abstract
Photosynthesis as one of the most fascinating natural processes uses sunlight and CO2 for the preparation of various organic substances. Taking nature as inspiration the present work applies two proteins in an artificial matrix for constructing a biohybrid system allowing light-to-chemical photocataysis. Thus, the protein complexes photosystem I (PSI) and formate dehydrogenase (FDH) are combined with a porous three-dimensional indium tin oxide structure. Direct electron transfer takes place between the electrode material and PSI resulting in cathodic photocurrents. Instead of maximizing the current output, the study focuses on the usage of the excited electrons to drive FDH catalysis. At the enzyme carbon dioxide is reduced to formate with an efficiency of about 15% relative to the number of enhanced photoelectrons. The arrangement is favorable since it enables the conversion of CO2 at rather small applied potential of −0.2 V vs Ag/AgCl and over a longer period of illumination. Conversion efficiency and stability provide a good starting point for further investigations. The reported ITO/PSI/FDH electrode represents a system that combines photocatalysis with enzymatic catalysis allowing the storage of light energy in chemical energy.
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- 2023
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17. Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism
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Ibrahim, Mohamed, Fransson, Thomas, Chatterjee, Ruchira, Cheah, Mun Hon, Hussein, Rana, Lassalle, Louise, Sutherlin, Kyle D, Young, Iris D, Fuller, Franklin D, Gul, Sheraz, Kim, In-Sik, Simon, Philipp S, de Lichtenberg, Casper, Chernev, Petko, Bogacz, Isabel, Pham, Cindy C, Orville, Allen M, Saichek, Nicholas, Northen, Trent, Batyuk, Alexander, Carbajo, Sergio, Alonso-Mori, Roberto, Tono, Kensuke, Owada, Shigeki, Bhowmick, Asmit, Bolotovsky, Robert, Mendez, Derek, Moriarty, Nigel W, Holton, James M, Dobbek, Holger, Brewster, Aaron S, Adams, Paul D, Sauter, Nicholas K, Bergmann, Uwe, Zouni, Athina, Messinger, Johannes, Kern, Jan, Yachandra, Vittal K, and Yano, Junko
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Inorganic Chemistry ,Chemical Sciences ,Hydrogen ,Magnesium ,Oxidation-Reduction ,Oxygen ,Photons ,Photosynthesis ,Photosystem II Protein Complex ,Quinones ,Water ,photosynthesis ,photosystem II ,water oxidation ,oxygen-evolving complex ,X-ray free electron laser - Abstract
In oxygenic photosynthesis, light-driven oxidation of water to molecular oxygen is carried out by the oxygen-evolving complex (OEC) in photosystem II (PS II). Recently, we reported the room-temperature structures of PS II in the four (semi)stable S-states, S1, S2, S3, and S0, showing that a water molecule is inserted during the S2 → S3 transition, as a new bridging O(H)-ligand between Mn1 and Ca. To understand the sequence of events leading to the formation of this last stable intermediate state before O2 formation, we recorded diffraction and Mn X-ray emission spectroscopy (XES) data at several time points during the S2 → S3 transition. At the electron acceptor site, changes due to the two-electron redox chemistry at the quinones, QA and QB, are observed. At the donor site, tyrosine YZ and His190 H-bonded to it move by 50 µs after the second flash, and Glu189 moves away from Ca. This is followed by Mn1 and Mn4 moving apart, and the insertion of OX(H) at the open coordination site of Mn1. This water, possibly a ligand of Ca, could be supplied via a "water wheel"-like arrangement of five waters next to the OEC that is connected by a large channel to the bulk solvent. XES spectra show that Mn oxidation (τ of ∼350 µs) during the S2 → S3 transition mirrors the appearance of OX electron density. This indicates that the oxidation state change and the insertion of water as a bridging atom between Mn1 and Ca are highly correlated.
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- 2020
18. Self-love emotion as a novel type of love for tourism destinations
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Lykoudi, Dimitra Margieta, primary, Zouni, Georgia, additional, and Tsogas, Markos Marios, additional
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- 2023
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19. Structure of intermediates of the water oxidation reaction in photosystem II
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Lassalle, L, Kern, J, Ibrahim, M, Sutherlin, KD, Young, ID, Chatterjee, R, Gul, S, Fuller, F, Hussein, R, Brewster, AS, Bhowmick, A, Sauter, NK, Zouni, A, Messinger, J, Yachandra, VK, and Yano, J
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Inorganic Chemistry ,Chemical Sciences ,Condensed Matter Physics ,Analytical Chemistry ,Physical Chemistry (incl. Structural) ,Inorganic & Nuclear Chemistry - Published
- 2019
20. Structural isomers of the S2 state in photosystem II: do they exist at room temperature and are they important for function?
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Fuller, Franklin, Ibrahim, Mohamed, de Lichtenberg, Casper, Cheah, Mun, Zouni, Athina, Messinger, Johannes, Yano, Junko, Yachandra, Vittal, Gul, Sheraz, Kern, Jan, Chatterjee, Ruchira, Lassalle, Louise, and Young, Iris
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Crystallography ,Electron Spin Resonance Spectroscopy ,Photosystem II Protein Complex ,Temperature ,X-Ray Absorption Spectroscopy - Abstract
In nature, an oxo-bridged Mn4 CaO5 cluster embedded in photosystem II (PSII), a membrane-bound multi-subunit pigment protein complex, catalyzes the water oxidation reaction that is driven by light-induced charge separations in the reaction center of PSII. The Mn4 CaO5 cluster accumulates four oxidizing equivalents to enable the four-electron four-proton catalysis of two water molecules to one dioxygen molecule and cycles through five intermediate S-states, S0 - S4 in the Kok cycle. One important question related to the catalytic mechanism of the oxygen-evolving complex (OEC) that remains is, whether structural isomers are present in some of the intermediate S-states and if such equilibria are essential for the mechanism of the O-O bond formation. Here we compare results from electron paramagnetic resonance (EPR) and X-ray absorption spectroscopy (XAS) obtained at cryogenic temperatures for the S2 state of PSII with structural data collected of the S1 , S2 and S3 states by serial crystallography at neutral pH (∼6.5) using an X-ray free electron laser at room temperature. While the cryogenic data show the presence of at least two structural forms of the S2 state, the room temperature crystallography data can be well-described by just one S2 structure. We discuss the deviating results and outline experimental strategies for clarifying this mechanistically important question.
- Published
- 2019
21. Structural isomers of the S2 state in photosystem II: do they exist at room temperature and are they important for function?
- Author
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Chatterjee, Ruchira, Lassalle, Louise, Gul, Sheraz, Fuller, Franklin D, Young, Iris D, Ibrahim, Mohamed, de Lichtenberg, Casper, Cheah, Mun Hon, Zouni, Athina, Messinger, Johannes, Yachandra, Vittal K, Kern, Jan, and Yano, Junko
- Subjects
Photosystem II Protein Complex ,Crystallography ,Electron Spin Resonance Spectroscopy ,Temperature ,X-Ray Absorption Spectroscopy ,Plant Biology & Botany ,Biochemistry and Cell Biology ,Plant Biology ,Horticultural Production - Abstract
In nature, an oxo-bridged Mn4 CaO5 cluster embedded in photosystem II (PSII), a membrane-bound multi-subunit pigment protein complex, catalyzes the water oxidation reaction that is driven by light-induced charge separations in the reaction center of PSII. The Mn4 CaO5 cluster accumulates four oxidizing equivalents to enable the four-electron four-proton catalysis of two water molecules to one dioxygen molecule and cycles through five intermediate S-states, S0 - S4 in the Kok cycle. One important question related to the catalytic mechanism of the oxygen-evolving complex (OEC) that remains is, whether structural isomers are present in some of the intermediate S-states and if such equilibria are essential for the mechanism of the O-O bond formation. Here we compare results from electron paramagnetic resonance (EPR) and X-ray absorption spectroscopy (XAS) obtained at cryogenic temperatures for the S2 state of PSII with structural data collected of the S1 , S2 and S3 states by serial crystallography at neutral pH (∼6.5) using an X-ray free electron laser at room temperature. While the cryogenic data show the presence of at least two structural forms of the S2 state, the room temperature crystallography data can be well-described by just one S2 structure. We discuss the deviating results and outline experimental strategies for clarifying this mechanistically important question.
- Published
- 2019
22. Bio-inorganic hybrid structures for direct electron transfer to photosystem I in photobioelectrodes
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Morlock, Sascha, Subramanian, Senthil Kumar, Zouni, Athina, and Lisdat, Fred
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- 2022
- Full Text
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23. Structures of the intermediates of Kok's photosynthetic water oxidation clock.
- Author
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Kern, Jan, Chatterjee, Ruchira, Young, Iris D, Fuller, Franklin D, Lassalle, Louise, Ibrahim, Mohamed, Gul, Sheraz, Fransson, Thomas, Brewster, Aaron S, Alonso-Mori, Roberto, Hussein, Rana, Zhang, Miao, Douthit, Lacey, de Lichtenberg, Casper, Cheah, Mun Hon, Shevela, Dmitry, Wersig, Julia, Seuffert, Ina, Sokaras, Dimosthenis, Pastor, Ernest, Weninger, Clemens, Kroll, Thomas, Sierra, Raymond G, Aller, Pierre, Butryn, Agata, Orville, Allen M, Liang, Mengning, Batyuk, Alexander, Koglin, Jason E, Carbajo, Sergio, Boutet, Sébastien, Moriarty, Nigel W, Holton, James M, Dobbek, Holger, Adams, Paul D, Bergmann, Uwe, Sauter, Nicholas K, Zouni, Athina, Messinger, Johannes, Yano, Junko, and Yachandra, Vittal K
- Abstract
Inspired by the period-four oscillation in flash-induced oxygen evolution of photosystem II discovered by Joliot in 1969, Kok performed additional experiments and proposed a five-state kinetic model for photosynthetic oxygen evolution, known as Kok's S-state clock or cycle1,2. The model comprises four (meta)stable intermediates (S0, S1, S2 and S3) and one transient S4 state, which precedes dioxygen formation occurring in a concerted reaction from two water-derived oxygens bound at an oxo-bridged tetra manganese calcium (Mn4CaO5) cluster in the oxygen-evolving complex3-7. This reaction is coupled to the two-step reduction and protonation of the mobile plastoquinone QB at the acceptor side of PSII. Here, using serial femtosecond X-ray crystallography and simultaneous X-ray emission spectroscopy with multi-flash visible laser excitation at room temperature, we visualize all (meta)stable states of Kok's cycle as high-resolution structures (2.04-2.08 Å). In addition, we report structures of two transient states at 150 and 400 µs, revealing notable structural changes including the binding of one additional 'water', Ox, during the S2→S3 state transition. Our results suggest that one water ligand to calcium (W3) is directly involved in substrate delivery. The binding of the additional oxygen Ox in the S3 state between Ca and Mn1 supports O-O bond formation mechanisms involving O5 as one substrate, where Ox is either the other substrate oxygen or is perfectly positioned to refill the O5 position during O2 release. Thus, our results exclude peroxo-bond formation in the S3 state, and the nucleophilic attack of W3 onto W2 is unlikely.
- Published
- 2018
24. Insights into the binding behavior of native and non-native cytochromes to photosystem I from Thermosynechococcus elongatus
- Author
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Kölsch, Adrian, Hejazi, Mahdi, Stieger, Kai R, Feifel, Sven C, Kern, Jan F, Müh, Frank, Lisdat, Fred, Lokstein, Heiko, and Zouni, Athina
- Subjects
Chemical Sciences ,Physical Chemistry ,Animals ,Bacterial Proteins ,Binding Sites ,Cyanobacteria ,Cytochromes c ,Cytochromes c6 ,Horses ,Molecular Docking Simulation ,Osmolar Concentration ,Photosystem I Protein Complex ,Static Electricity ,complex ,crystallography ,cytochrome c ,docking ,photosynthesis ,photosystem I ,Biological Sciences ,Medical and Health Sciences ,Biochemistry & Molecular Biology ,Biological sciences ,Biomedical and clinical sciences ,Chemical sciences - Abstract
The binding of photosystem I (PS I) from Thermosynechococcus elongatus to the native cytochrome (cyt) c6 and cyt c from horse heart (cyt cHH) was analyzed by oxygen consumption measurements, isothermal titration calorimetry (ITC), and rigid body docking combined with electrostatic computations of binding energies. Although PS I has a higher affinity for cyt cHH than for cyt c6, the influence of ionic strength and pH on binding is different in the two cases. ITC and theoretical computations revealed the existence of unspecific binding sites for cyt cHH besides one specific binding site close to P700 Binding to PS I was found to be the same for reduced and oxidized cyt cHH Based on this information, suitable conditions for cocrystallization of cyt cHH with PS I were found, resulting in crystals with a PS I:cyt cHH ratio of 1:1. A crystal structure at 3.4-Å resolution was obtained, but cyt cHH cannot be identified in the electron density map because of unspecific binding sites and/or high flexibility at the specific binding site. Modeling the binding of cyt c6 to PS I revealed a specific binding site where the distance and orientation of cyt c6 relative to P700 are comparable with cyt c2 from purple bacteria relative to P870 This work provides new insights into the binding modes of different cytochromes to PS I, thus facilitating steps toward solving the PS I-cyt c costructure and a more detailed understanding of natural electron transport processes.
- Published
- 2018
25. Optimizing Crystal Size of Photosystem II by Macroseeding: Toward Neutron Protein Crystallography
- Author
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Hussein, Rana, Ibrahim, Mohamed, Chatterjee, Ruchira, Coates, Leighton, Müh, Frank, Yachandra, Vittal K, Yano, Junko, Kern, Jan, Dobbek, Holger, and Zouni, Athina
- Subjects
Inorganic Chemistry ,Chemical Sciences ,1.1 Normal biological development and functioning ,Underpinning research ,Generic health relevance ,Physical Chemistry (incl. Structural) ,Materials Engineering ,Inorganic & Nuclear Chemistry ,Inorganic chemistry ,Physical chemistry ,Materials engineering - Abstract
Photosystem II (PSII) catalyzes the photo-oxidation of water to molecular oxygen and protons. The water splitting reaction occurs inside the oxygen-evolving complex (OEC) via a Mn4CaO5 cluster. To elucidate the reaction mechanism, detailed structural information for each intermediate state of the OEC is required. Despite the current high-resolution crystal structure of PSII at 1.85 Å and other efforts to follow the structural changes of the Mn4CaO5 cluster using X-ray free electron laser (XFEL) crystallography in addition to spectroscopic methods, many details about the reaction mechanism and conformational changes in the catalytic site during water oxidation still remain elusive. In this study, we present a rarely found successful application of the conventional macroseeding method to a large membrane protein like the dimeric PSII core complex (dPSIIcc). Combining microseeding with macroseeding crystallization techniques allowed us to reproducibly grow large dPSIIcc crystals with a size of ~3 mm. These large crystals will help improve the data collected from spectroscopic methods like polarized extended X-ray absorption fine structure (EXAFS) and single crystal electron paramagnetic resonance (EPR) techniques and are a prerequisite for determining a three-dimensional structure using neutron diffraction.
- Published
- 2018
26. Electrospinning for building 3D structured photoactive biohybrid electrodes
- Author
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Nioradze, Nikoloz, Ciornii, Dmitri, Kölsch, Adrian, Göbel, Gero, Khoshtariya, Dimitri E., Zouni, Athina, and Lisdat, Fred
- Published
- 2021
- Full Text
- View/download PDF
27. Cryo-EM insight into hydrogen positions and water networks in photosystem II
- Author
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Hussein, Rana, primary, Graca, Andre T., additional, Forsman, Jack, additional, Aydin, Orkun A., additional, Hall, Michael, additional, Gaetcke, Julia, additional, Chernev, Petko, additional, Wendler, Petra, additional, Dobbek, Holger, additional, Messinger, Johannes, additional, Zouni, Athina, additional, and Schroder, Wolfgang P., additional
- Published
- 2024
- Full Text
- View/download PDF
28. Room temperature XFEL crystallography reveals asymmetry in the vicinity of the two phylloquinones in photosystem I
- Author
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Stephen M. Keable, Adrian Kölsch, Philipp S. Simon, Medhanjali Dasgupta, Ruchira Chatterjee, Senthil Kumar Subramanian, Rana Hussein, Mohamed Ibrahim, In-Sik Kim, Isabel Bogacz, Hiroki Makita, Cindy C. Pham, Franklin D. Fuller, Sheraz Gul, Daniel Paley, Louise Lassalle, Kyle D. Sutherlin, Asmit Bhowmick, Nigel W. Moriarty, Iris D. Young, Johannes P. Blaschke, Casper de Lichtenberg, Petko Chernev, Mun Hon Cheah, Sehan Park, Gisu Park, Jangwoo Kim, Sang Jae Lee, Jaehyun Park, Kensuke Tono, Shigeki Owada, Mark S. Hunter, Alexander Batyuk, Roland Oggenfuss, Mathias Sander, Serhane Zerdane, Dmitry Ozerov, Karol Nass, Henrik Lemke, Roman Mankowsky, Aaron S. Brewster, Johannes Messinger, Nicholas K. Sauter, Vittal K. Yachandra, Junko Yano, Athina Zouni, and Jan Kern
- Subjects
Medicine ,Science - Abstract
Abstract Photosystem I (PS I) has a symmetric structure with two highly similar branches of pigments at the center that are involved in electron transfer, but shows very different efficiency along the two branches. We have determined the structure of cyanobacterial PS I at room temperature (RT) using femtosecond X-ray pulses from an X-ray free electron laser (XFEL) that shows a clear expansion of the entire protein complex in the direction of the membrane plane, when compared to previous cryogenic structures. This trend was observed by complementary datasets taken at multiple XFEL beamlines. In the RT structure of PS I, we also observe conformational differences between the two branches in the reaction center around the secondary electron acceptors A1A and A1B. The π-stacked Phe residues are rotated with a more parallel orientation in the A-branch and an almost perpendicular confirmation in the B-branch, and the symmetry breaking PsaB-Trp673 is tilted and further away from A1A. These changes increase the asymmetry between the branches and may provide insights into the preferential directionality of electron transfer.
- Published
- 2021
- Full Text
- View/download PDF
29. Structural dynamics in the water and proton channels of photosystem II during the S2 to S3 transition
- Author
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Rana Hussein, Mohamed Ibrahim, Asmit Bhowmick, Philipp S. Simon, Ruchira Chatterjee, Louise Lassalle, Margaret Doyle, Isabel Bogacz, In-Sik Kim, Mun Hon Cheah, Sheraz Gul, Casper de Lichtenberg, Petko Chernev, Cindy C. Pham, Iris D. Young, Sergio Carbajo, Franklin D. Fuller, Roberto Alonso-Mori, Alex Batyuk, Kyle D. Sutherlin, Aaron S. Brewster, Robert Bolotovsky, Derek Mendez, James M. Holton, Nigel W. Moriarty, Paul D. Adams, Uwe Bergmann, Nicholas K. Sauter, Holger Dobbek, Johannes Messinger, Athina Zouni, Jan Kern, Vittal K. Yachandra, and Junko Yano
- Subjects
Science - Abstract
The oxygen-evolving complex in Photosystem II (PSII) catalyzes the light-driven oxidation of water to oxygen and it is still under debate how the water reaches the active site. Here, the authors analyse time-resolved XFEL-based crystal structures of PSII that were determined at room temperature and report the structures of the waters in the putative channels surrounding the active site at various time-points during the reaction cycle and conclude that the O1 channel is the likely water intake pathway and the Cl1 channel the likely proton release pathway.
- Published
- 2021
- Full Text
- View/download PDF
30. Assessment of the manganese cluster’s oxidation state via photoactivation of photosystem II microcrystals
- Author
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Cheah, Mun Hon, Zhang, Miao, Shevela, Dmitry, Mamedov, Fikret, Zouni, Athina, and Messinger, Johannes
- Published
- 2020
31. Structural insights into the light-driven auto-assembly process of the water-oxidizing Mn4CaO5-cluster in photosystem II.
- Author
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Zhang, Miao, Bommer, Martin, Chatterjee, Ruchira, Hussein, Rana, Yano, Junko, Dau, Holger, Kern, Jan, Dobbek, Holger, and Zouni, Athina
- Subjects
Oxygen ,Calcium ,Manganese ,Water ,Photosystem II Protein Complex ,Photosynthesis ,Protein Conformation ,Oxidation-Reduction ,Kinetics ,Catalysis ,Light ,Models ,Molecular ,Mn4CaO5-cluster depletion ,Thermosynechococcus elongatus ,apo-PSII X-ray structure ,assembly/disassembly of Photosystem II ,biochemistry ,biophysics ,intermediate state ,photo-activation ,structural biology ,Biochemistry and Cell Biology - Abstract
In plants, algae and cyanobacteria, Photosystem II (PSII) catalyzes the light-driven splitting of water at a protein-bound Mn4CaO5-cluster, the water-oxidizing complex (WOC). In the photosynthetic organisms, the light-driven formation of the WOC from dissolved metal ions is a key process because it is essential in both initial activation and continuous repair of PSII. Structural information is required for understanding of this chaperone-free metal-cluster assembly. For the first time, we obtained a structure of PSII from Thermosynechococcus elongatus without the Mn4CaO5-cluster. Surprisingly, cluster-removal leaves the positions of all coordinating amino acid residues and most nearby water molecules largely unaffected, resulting in a pre-organized ligand shell for kinetically competent and error-free photo-assembly of the Mn4CaO5-cluster. First experiments initiating (i) partial disassembly and (ii) partial re-assembly after complete depletion of the Mn4CaO5-cluster agree with a specific bi-manganese cluster, likely a di-µ-oxo bridged pair of Mn(III) ions, as an assembly intermediate.
- Published
- 2017
32. Exploring the dynamic of PSII at room temperature by simultaneous femtosecond X-ray spectroscopy and dffraction
- Author
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Lassalle, Louise, Young, Iris, Ibrahim, Mohamed, Chatterjee, Ruchira, Gul, Sheraz, Fuller, Franklin, Brewster, Aaron, Douthit, Lacey, Pastor, Ernest, Sauter, Nicholas, Zouni, Athina, Kern, Jan, Yachandra, Vittal, and Yano, Junko
- Subjects
Macromolecular and Materials Chemistry ,Chemical Sciences ,Condensed Matter Physics ,Analytical Chemistry ,Physical Chemistry (incl. Structural) ,Inorganic & Nuclear Chemistry - Published
- 2017
33. Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.
- Author
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Fuller, Franklin D, Gul, Sheraz, Chatterjee, Ruchira, Burgie, E Sethe, Young, Iris D, Lebrette, Hugo, Srinivas, Vivek, Brewster, Aaron S, Michels-Clark, Tara, Clinger, Jonathan A, Andi, Babak, Ibrahim, Mohamed, Pastor, Ernest, de Lichtenberg, Casper, Hussein, Rana, Pollock, Christopher J, Zhang, Miao, Stan, Claudiu A, Kroll, Thomas, Fransson, Thomas, Weninger, Clemens, Kubin, Markus, Aller, Pierre, Lassalle, Louise, Bräuer, Philipp, Miller, Mitchell D, Amin, Muhamed, Koroidov, Sergey, Roessler, Christian G, Allaire, Marc, Sierra, Raymond G, Docker, Peter T, Glownia, James M, Nelson, Silke, Koglin, Jason E, Zhu, Diling, Chollet, Matthieu, Song, Sanghoon, Lemke, Henrik, Liang, Mengning, Sokaras, Dimosthenis, Alonso-Mori, Roberto, Zouni, Athina, Messinger, Johannes, Bergmann, Uwe, Boal, Amie K, Bollinger, J Martin, Krebs, Carsten, Högbom, Martin, Phillips, George N, Vierstra, Richard D, Sauter, Nicholas K, Orville, Allen M, Kern, Jan, Yachandra, Vittal K, and Yano, Junko
- Subjects
Photosystem II Protein Complex ,Ribonucleotide Reductases ,Phytochrome ,Crystallography ,X-Ray ,Spectrometry ,X-Ray Emission ,Lasers ,Acoustics ,Crystallography ,X-Ray ,Spectrometry ,X-Ray Emission ,Developmental Biology ,Biological Sciences ,Technology ,Medical and Health Sciences - Abstract
X-ray crystallography at X-ray free-electron laser sources is a powerful method for studying macromolecules at biologically relevant temperatures. Moreover, when combined with complementary techniques like X-ray emission spectroscopy, both global structures and chemical properties of metalloenzymes can be obtained concurrently, providing insights into the interplay between the protein structure and dynamics and the chemistry at an active site. The implementation of such a multimodal approach can be compromised by conflicting requirements to optimize each individual method. In particular, the method used for sample delivery greatly affects the data quality. We present here a robust way of delivering controlled sample amounts on demand using acoustic droplet ejection coupled with a conveyor belt drive that is optimized for crystallography and spectroscopy measurements of photochemical and chemical reactions over a wide range of time scales. Studies with photosystem II, the phytochrome photoreceptor, and ribonucleotide reductase R2 illustrate the power and versatility of this method.
- Published
- 2017
34. Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs
- Author
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Alonso-Mori, R, Asa, K, Bergmann, U, Brewster, AS, Chatterjee, R, Cooper, JK, Frei, HM, Fuller, FD, Goggins, E, Gul, S, Fukuzawa, H, Iablonskyi, D, Ibrahim, M, Katayama, T, Kroll, T, Kumagai, Y, McClure, BA, Messinger, J, Motomura, K, Nagaya, K, Nishiyama, T, Saracini, C, Sato, Y, Sauter, NK, Sokaras, D, Takanashi, T, Togashi, T, Ueda, K, Weare, WW, Weng, T-C, Yabashi, M, Yachandra, VK, Young, ID, Zouni, A, Kern, JF, and Yano, J
- Subjects
Inorganic Chemistry ,Chemical Sciences ,Physical Chemistry ,Catalysis ,Crystallography ,X-Ray ,Electrons ,Lasers ,X-Rays ,Chemical Physics ,Chemical sciences - Abstract
The ultra-bright femtosecond X-ray pulses provided by X-ray Free Electron Lasers (XFELs) open capabilities for studying the structure and dynamics of a wide variety of biological and inorganic systems beyond what is possible at synchrotron sources. Although the structure and chemistry at the catalytic sites have been studied intensively in both biological and inorganic systems, a full understanding of the atomic-scale chemistry requires new approaches beyond the steady state X-ray crystallography and X-ray spectroscopy at cryogenic temperatures. Following the dynamic changes in the geometric and electronic structure at ambient conditions, while overcoming X-ray damage to the redox active catalytic center, is key for deriving reaction mechanisms. Such studies become possible by using the intense and ultra-short femtosecond X-ray pulses from an XFEL, where sample is probed before it is damaged. We have developed methodology for simultaneously collecting X-ray diffraction data and X-ray emission spectra, using an energy dispersive spectrometer, at ambient conditions, and used this approach to study the room temperature structure and intermediate states of the photosynthetic water oxidizing metallo-protein, photosystem II. Moreover, we have also used this setup to simultaneously collect the X-ray emission spectra from multiple metals to follow the ultrafast dynamics of light-induced charge transfer between multiple metal sites. A Mn-Ti containing system was studied at an XFEL to demonstrate the efficacy and potential of this method.
- Published
- 2016
35. Structure of photosystem II and substrate binding at room temperature
- Author
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Young, Iris D, Ibrahim, Mohamed, Chatterjee, Ruchira, Gul, Sheraz, Fuller, Franklin D, Koroidov, Sergey, Brewster, Aaron S, Tran, Rosalie, Alonso-Mori, Roberto, Kroll, Thomas, Michels-Clark, Tara, Laksmono, Hartawan, Sierra, Raymond G, Stan, Claudiu A, Hussein, Rana, Zhang, Miao, Douthit, Lacey, Kubin, Markus, de Lichtenberg, Casper, Vo Pham, Long, Nilsson, Håkan, Cheah, Mun Hon, Shevela, Dmitriy, Saracini, Claudio, Bean, Mackenzie A, Seuffert, Ina, Sokaras, Dimosthenis, Weng, Tsu-Chien, Pastor, Ernest, Weninger, Clemens, Fransson, Thomas, Lassalle, Louise, Bräuer, Philipp, Aller, Pierre, Docker, Peter T, Andi, Babak, Orville, Allen M, Glownia, James M, Nelson, Silke, Sikorski, Marcin, Zhu, Diling, Hunter, Mark S, Lane, Thomas J, Aquila, Andy, Koglin, Jason E, Robinson, Joseph, Liang, Mengning, Boutet, Sébastien, Lyubimov, Artem Y, Uervirojnangkoorn, Monarin, Moriarty, Nigel W, Liebschner, Dorothee, Afonine, Pavel V, Waterman, David G, Evans, Gwyndaf, Wernet, Philippe, Dobbek, Holger, Weis, William I, Brunger, Axel T, Zwart, Petrus H, Adams, Paul D, Zouni, Athina, Messinger, Johannes, Bergmann, Uwe, Sauter, Nicholas K, Kern, Jan, Yachandra, Vittal K, and Yano, Junko
- Subjects
Plant Biology ,Biological Sciences ,Physical Sciences ,Ammonia ,Bacterial Proteins ,Binding Sites ,Crystallization ,Cyanobacteria ,Electrons ,Lasers ,Manganese ,Models ,Molecular ,Oxygen ,Photosystem II Protein Complex ,Substrate Specificity ,Temperature ,Water ,General Science & Technology - Abstract
Light-induced oxidation of water by photosystem II (PS II) in plants, algae and cyanobacteria has generated most of the dioxygen in the atmosphere. PS II, a membrane-bound multi-subunit pigment protein complex, couples the one-electron photochemistry at the reaction centre with the four-electron redox chemistry of water oxidation at the Mn4CaO5 cluster in the oxygen-evolving complex (OEC). Under illumination, the OEC cycles through five intermediate S-states (S0 to S4), in which S1 is the dark-stable state and S3 is the last semi-stable state before O-O bond formation and O2 evolution. A detailed understanding of the O-O bond formation mechanism remains a challenge, and will require elucidation of both the structures of the OEC in the different S-states and the binding of the two substrate waters to the catalytic site. Here we report the use of femtosecond pulses from an X-ray free electron laser (XFEL) to obtain damage-free, room temperature structures of dark-adapted (S1), two-flash illuminated (2F; S3-enriched), and ammonia-bound two-flash illuminated (2F-NH3; S3-enriched) PS II. Although the recent 1.95 Å resolution structure of PS II at cryogenic temperature using an XFEL provided a damage-free view of the S1 state, measurements at room temperature are required to study the structural landscape of proteins under functional conditions, and also for in situ advancement of the S-states. To investigate the water-binding site(s), ammonia, a water analogue, has been used as a marker, as it binds to the Mn4CaO5 cluster in the S2 and S3 states. Since the ammonia-bound OEC is active, the ammonia-binding Mn site is not a substrate water site. This approach, together with a comparison of the native dark and 2F states, is used to discriminate between proposed O-O bond formation mechanisms.
- Published
- 2016
36. Cryo-electron microscopy reveals hydrogen positions and water networks in photosystem II.
- Author
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Hussein, Rana, Graça, André, Forsman, Jack, Aydin, A. Orkun, Hall, Michael, Gaetcke, Julia, Chernev, Petko, Wendler, Petra, Dobbek, Holger, Messinger, Johannes, Zouni, Athina, and Schröder, Wolfgang P.
- Published
- 2024
- Full Text
- View/download PDF
37. Tourism Marketing Strategies Incorporating Both Tourists and Tourism Professionals: The Case of Thessaloniki, Greece
- Author
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Zouni, Georgia, Gkougkoulitsas, Theocharis, Pisello, Anna Laura, Editorial Board Member, Hawkes, Dean, Editorial Board Member, Bougdah, Hocine, Editorial Board Member, Rosso, Federica, Editorial Board Member, Abdalla, Hassan, Editorial Board Member, Boemi, Sofia-Natalia, Editorial Board Member, Mohareb, Nabil, Editorial Board Member, Mesbah Elkaffas, Saleh, Editorial Board Member, Bozonnet, Emmanuel, Editorial Board Member, Pignatta, Gloria, Editorial Board Member, Mahgoub, Yasser, Editorial Board Member, De Bonis, Luciano, Editorial Board Member, Kostopoulou, Stella, Editorial Board Member, Pradhan, Biswajeet, Editorial Board Member, Abdul Mannan, Md., Editorial Board Member, Alalouch, Chaham, Editorial Board Member, O. Gawad, Iman, Editorial Board Member, Amer, Mourad, Series Editor, Stankov, Uglješa, editor, and Attia, Sahar, editor
- Published
- 2019
- Full Text
- View/download PDF
38. No observable conformational changes in PSII
- Author
-
Sauter, Nicholas K, Echols, Nathaniel, Adams, Paul D, Zwart, Petrus H, Kern, Jan, Brewster, Aaron S, Koroidov, Sergey, Alonso-Mori, Roberto, Zouni, Athina, Messinger, Johannes, Bergmann, Uwe, Yano, Junko, and Yachandra, Vittal K
- Subjects
Crystallography ,X-Ray ,Cyanobacteria ,Models ,Molecular ,Photosystem II Protein Complex ,General Science & Technology - Published
- 2016
39. Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography
- Author
-
Roessler, Christian G, Agarwal, Rakhi, Allaire, Marc, Alonso-Mori, Roberto, Andi, Babak, Bachega, José FR, Bommer, Martin, Brewster, Aaron S, Browne, Michael C, Chatterjee, Ruchira, Cho, Eunsun, Cohen, Aina E, Cowan, Matthew, Datwani, Sammy, Davidson, Victor L, Defever, Jim, Eaton, Brent, Ellson, Richard, Feng, Yiping, Ghislain, Lucien P, Glownia, James M, Han, Guangye, Hattne, Johan, Hellmich, Julia, Héroux, Annie, Ibrahim, Mohamed, Kern, Jan, Kuczewski, Anthony, Lemke, Henrik T, Liu, Pinghua, Majlof, Lars, McClintock, William M, Myers, Stuart, Nelsen, Silke, Olechno, Joe, Orville, Allen M, Sauter, Nicholas K, Soares, Alexei S, Soltis, S Michael, Song, Heng, Stearns, Richard G, Tran, Rosalie, Tsai, Yingssu, Uervirojnangkoorn, Monarin, Wilmot, Carrie M, Yachandra, Vittal, Yano, Junko, Yukl, Erik T, Zhu, Diling, and Zouni, Athina
- Subjects
Inorganic Chemistry ,Chemical Sciences ,Biological Sciences ,Acoustics ,Crystallography ,X-Ray ,Enzymes ,Models ,Molecular ,Muramidase ,Protein Conformation ,Thermolysin ,Biophysics - Abstract
X-ray free-electron lasers (XFELs) provide very intense X-ray pulses suitable for macromolecular crystallography. Each X-ray pulse typically lasts for tens of femtoseconds and the interval between pulses is many orders of magnitude longer. Here we describe two novel acoustic injection systems that use focused sound waves to eject picoliter to nanoliter crystal-containing droplets out of microplates and into the X-ray pulse from which diffraction data are collected. The on-demand droplet delivery is synchronized to the XFEL pulse scheme, resulting in X-ray pulses intersecting up to 88% of the droplets. We tested several types of samples in a range of crystallization conditions, wherein the overall crystal hit ratio (e.g., fraction of images with observable diffraction patterns) is a function of the microcrystal slurry concentration. We report crystal structures from lysozyme, thermolysin, and stachydrine demethylase (Stc2). Additional samples were screened to demonstrate that these methods can be applied to rare samples.
- Published
- 2016
40. Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II
- Author
-
Sierra, Raymond G, Gati, Cornelius, Laksmono, Hartawan, Dao, E Han, Gul, Sheraz, Fuller, Franklin, Kern, Jan, Chatterjee, Ruchira, Ibrahim, Mohamed, Brewster, Aaron S, Young, Iris D, Michels-Clark, Tara, Aquila, Andrew, Liang, Mengning, Hunter, Mark S, Koglin, Jason E, Boutet, Sébastien, Junco, Elia A, Hayes, Brandon, Bogan, Michael J, Hampton, Christina Y, Puglisi, Elisabetta V, Sauter, Nicholas K, Stan, Claudiu A, Zouni, Athina, Yano, Junko, Yachandra, Vittal K, Soltis, S Michael, Puglisi, Joseph D, and DeMirci, Hasan
- Subjects
Biological Sciences ,Crystallography ,Models ,Molecular ,Photosystem II Protein Complex ,Ribosomes ,Technology ,Medical and Health Sciences ,Developmental Biology ,Biological sciences - Abstract
We describe a concentric-flow electrokinetic injector for efficiently delivering microcrystals for serial femtosecond X-ray crystallography analysis that enables studies of challenging biological systems in their unadulterated mother liquor. We used the injector to analyze microcrystals of Geobacillus stearothermophilus thermolysin (2.2-Å structure), Thermosynechococcus elongatus photosystem II (
- Published
- 2016
41. High‐density grids for efficient data collection from multiple crystals
- Author
-
Baxter, Elizabeth L, Aguila, Laura, Alonso-Mori, Roberto, Barnes, Christopher O, Bonagura, Christopher A, Brehmer, Winnie, Brunger, Axel T, Calero, Guillermo, Caradoc-Davies, Tom T, Chatterjee, Ruchira, Degrado, William F, Fraser, James S, Ibrahim, Mohamed, Kern, Jan, Kobilka, Brian K, Kruse, Andrew C, Larsson, Karl M, Lemke, Heinrik T, Lyubimov, Artem Y, Manglik, Aashish, McPhillips, Scott E, Norgren, Erik, Pang, Siew S, Soltis, SM, Song, Jinhu, Thomaston, Jessica, Tsai, Yingssu, Weis, William I, Woldeyes, Rahel A, Yachandra, Vittal, Yano, Junko, Zouni, Athina, and Cohen, Aina E
- Subjects
Inorganic Chemistry ,Chemical Sciences ,Bioengineering ,Animals ,Crystallization ,Crystallography ,X-Ray ,Data Collection ,Diffusion ,Equipment Design ,Humans ,Temperature ,Volatilization ,XFELs ,high-throughput crystallography ,serial crystallography ,sample delivery ,automation for sample-exchange robots ,Physical Sciences ,Biological Sciences ,Biophysics ,Biological sciences ,Chemical sciences ,Physical sciences - Abstract
Higher throughput methods to mount and collect data from multiple small and radiation-sensitive crystals are important to support challenging structural investigations using microfocus synchrotron beamlines. Furthermore, efficient sample-delivery methods are essential to carry out productive femtosecond crystallography experiments at X-ray free-electron laser (XFEL) sources such as the Linac Coherent Light Source (LCLS). To address these needs, a high-density sample grid useful as a scaffold for both crystal growth and diffraction data collection has been developed and utilized for efficient goniometer-based sample delivery at synchrotron and XFEL sources. A single grid contains 75 mounting ports and fits inside an SSRL cassette or uni-puck storage container. The use of grids with an SSRL cassette expands the cassette capacity up to 7200 samples. Grids may also be covered with a polymer film or sleeve for efficient room-temperature data collection from multiple samples. New automated routines have been incorporated into the Blu-Ice/DCSS experimental control system to support grids, including semi-automated grid alignment, fully automated positioning of grid ports, rastering and automated data collection. Specialized tools have been developed to support crystallization experiments on grids, including a universal adaptor, which allows grids to be filled by commercial liquid-handling robots, as well as incubation chambers, which support vapor-diffusion and lipidic cubic phase crystallization experiments. Experiments in which crystals were loaded into grids or grown on grids using liquid-handling robots and incubation chambers are described. Crystals were screened at LCLS-XPP and SSRL BL12-2 at room temperature and cryogenic temperatures.
- Published
- 2016
42. Lobbyscape: A framework about the effect of hotel lobbies’ atmospheric elements on customer satisfaction
- Author
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Minoas Pytharoulakis and Georgia Zouni
- Subjects
hotels ,hospitality management ,lobby ,marketing ,servicescape ,Hospitality industry. Hotels, clubs, restaurants, etc. Food service ,TX901-946.5 - Abstract
This article aims to present a new conceptual model about the “lobbyscape” (i.e. the “servicescape” of hotel lobbies or foyers). A review of the existing literature, along with the authors’ expertise, provided four dimensions and 25 atmospheric elements for the “ASAP (aesthetics, space, atmosphere and physiological conditions) Lobbyscape Model”. The atmospheric elements’ effect on customer satisfaction with their stay was carried out through a survey questionnaire to customers of four- and five-star hotels in Athens, providing 277 valid responses. The results of the survey demonstrated that for the vast majority of hotel guests, the effect of each of the 25 atmospheric elements is quite or absolutely important for the satisfaction they get from their stay. As a new framework for further understanding of the hotel lobbies’ effect on customer satisfaction, the lobbyscape concept could provide significant opportunities to increase sales, contribute to the overall quality of customer service, and be considered as a vital part of the overall hotel services’ perceived value.
- Published
- 2020
- Full Text
- View/download PDF
43. Current limits of structural biology: The transient interaction between cytochrome c6 and photosystem I
- Author
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A. Kölsch, C. Radon, M. Golub, A. Baumert, J. Bürger, T. Mielke, F. Lisdat, A. Feoktystov, J. Pieper, A. Zouni, and P. Wendler
- Subjects
Photosystem I ,Cryo EM ,Thermosynechococcus elongatus ,Small angle neutron scattering ,Cytochrome c6, electron transfer ,Electron transfer ,Biology (General) ,QH301-705.5 - Abstract
Trimeric photosystem I from the cyanobacterium Thermosynechococcus elongatus (TePSI) is an intrinsic membrane protein, which converts solar energy into electrical energy by oxidizing the soluble redox mediator cytochrome c6 (Cyt c6) and reducing ferredoxin. Here, we use cryo-electron microscopy and small angle neutron scattering (SANS) to characterize the transient binding of Cyt c6 to TePSI. The structure of TePSI cross-linked to Cyt c6 was solved at a resolution of 2.9 Å and shows additional cofactors as well as side chain density for 84% of the peptide chain of subunit PsaK, revealing a hydrophobic, membrane intrinsic loop that enables binding of associated proteins. Due to the poor binding specificity, Cyt c6 could not be localized with certainty in our cryo-EM analysis. SANS measurements confirm that Cyt c6 does not bind to TePSI at protein concentrations comparable to those for cross-linking. However, SANS data indicate a complex formation between TePSI and the non-native mitochondrial cytochrome from horse heart (Cyt cHH). Our study pinpoints the difficulty of identifying very small binding partners (less than 5% of the overall size) in EM structures when binding affinities are poor. We relate our results to well resolved co-structures with known binding affinities and recommend confirmatory methods for complexes with KM values higher than 20 μM.
- Published
- 2020
- Full Text
- View/download PDF
44. Improvements in serial femtosecond crystallography of photosystem II by optimizing crystal uniformity using microseeding procedures
- Author
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Ibrahim, Mohamed, Chatterjee, Ruchira, Hellmich, Julia, Tran, Rosalie, Bommer, Martin, Yachandra, Vittal K, Yano, Junko, Kern, Jan, and Zouni, Athina
- Subjects
Inorganic Chemistry ,Chemical Sciences ,Physical Sciences ,Physical chemistry ,Condensed matter physics ,Particle and high energy physics - Abstract
In photosynthesis, photosystem II (PSII) is the multi-subunit membrane protein complex that catalyzes photo-oxidation of water into dioxygen through the oxygen evolving complex (OEC). To understand the water oxidation reaction, it is important to get structural information about the transient and intermediate states of the OEC in the dimeric PSII core complex (dPSIIcc). In recent times, femtosecond X-ray pulses from the free electron laser (XFEL) are being used to obtain X-ray diffraction (XRD) data of dPSIIcc microcrystals at room temperature that are free of radiation damage. In our experiments at the XFEL, we used an electrospun liquid microjet setup that requires microcrystals less than 40 μm in size. In this study, we explored various microseeding techniques to get a high yield of monodisperse uniform-sized microcrystals. Monodisperse microcrystals of dPSIIcc of uniform size were a key to improve the stability of the jet and the quality of XRD data obtained at the XFEL. This was evident by an improvement of the quality of the datasets obtained, from 6.5Å, using crystals grown without the micro seeding approach, to 4.5Å using crystals generated with the new method.
- Published
- 2015
45. Effects of x-ray free-electron laser pulse intensity on the Mn Kβ1,3 x-ray emission spectrum in photosystem II—A case study for metalloprotein crystals and solutions
- Author
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Thomas Fransson, Roberto Alonso-Mori, Ruchira Chatterjee, Mun Hon Cheah, Mohamed Ibrahim, Rana Hussein, Miao Zhang, Franklin Fuller, Sheraz Gul, In-Sik Kim, Philipp S. Simon, Isabel Bogacz, Hiroki Makita, Casper de Lichtenberg, Sanghoon Song, Alexander Batyuk, Dimosthenis Sokaras, Ramzi Massad, Margaret Doyle, Alexander Britz, Clemens Weninger, Athina Zouni, Johannes Messinger, Vittal K. Yachandra, Junko Yano, Jan Kern, and Uwe Bergmann
- Subjects
Crystallography ,QD901-999 - Abstract
In the last ten years, x-ray free-electron lasers (XFELs) have been successfully employed to characterize metalloproteins at room temperature using various techniques including x-ray diffraction, scattering, and spectroscopy. The approach has been to outrun the radiation damage by using femtosecond (fs) x-ray pulses. An example of an important and damage sensitive active metal center is the Mn4CaO5 cluster in photosystem II (PS II), the catalytic site of photosynthetic water oxidation. The combination of serial femtosecond x-ray crystallography and Kβ x-ray emission spectroscopy (XES) has proven to be a powerful multimodal approach for simultaneously probing the overall protein structure and the electronic state of the Mn4CaO5 cluster throughout the catalytic (Kok) cycle. As the observed spectral changes in the Mn4CaO5 cluster are very subtle, it is critical to consider the potential effects of the intense XFEL pulses on the Kβ XES signal. We report here a systematic study of the effects of XFEL peak power, beam focus, and dose on the Mn Kβ1,3 XES spectra in PS II over a wide range of pulse parameters collected over seven different experimental runs using both microcrystal and solution PS II samples. Our findings show that for beam intensities ranging from ∼5 × 1015 to 5 × 1017 W/cm2 at a pulse length of ∼35 fs, the spectral effects are small compared to those observed between S-states in the Kok cycle. Our results provide a benchmark for other XFEL-based XES studies on metalloproteins, confirming the viability of this approach.
- Published
- 2021
- Full Text
- View/download PDF
46. Exploiting new ways for a more efficient orientation and wiring of PSI to electrodes: A fullerene C70 approach
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Ciornii, Dmitri, Kölsch, Adrian, Zouni, Athina, and Lisdat, Fred
- Published
- 2019
- Full Text
- View/download PDF
47. Tourism observatories for measuring the Covid-19 impact on tourism
- Author
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Zouni, Georgia, Hatzimarinakis, Stavros, and Varelas, Sotirios
- Published
- 2022
48. Towards understanding the crystallization of photosystem II: Influence of poly(ethylene glycol) of various molecular sizes on the micelle formation of alkyl maltosides
- Author
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Müh, Frank, primary, Bothe, Adrian, additional, and Zouni, Athina, additional
- Published
- 2023
- Full Text
- View/download PDF
49. Marketing suggestions for multi-religious tourism development: The case of Thessaloniki
- Author
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Georgia Zouni and Dimitrios Digkas
- Subjects
religious tourism ,pilgrimage ,monotheistic monuments ,multi-religious destination ,Management. Industrial management ,HD28-70 ,Marketing. Distribution of products ,HF5410-5417.5 - Abstract
Today, the desire of honoring God has been transformed into one of the most interesting tourism sectors, the religious one. Religious tourism, undeniably, is a special form of tourism, which presents great potential for the future tourism in general and especially in Thessaloniki, Greece. This study examines the potential development of a multi-religious tourism product, by focusing on monuments from these three monotheistic religions in Thessaloniki. Finally, through the analysis and listing of monuments, which are associated with Muslims, Jewish and Christians, some recommendations are given about a sustainable strategic marketing plan development and religious tourism product renewal.
- Published
- 2019
- Full Text
- View/download PDF
50. Structural evidence for intermediates during O2 formation in photosystem II
- Author
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Asmit Bhowmick, Rana Hussein, Isabel Bogacz, Philipp S. Simon, Mohamed Ibrahim, Ruchira Chatterjee, Margaret D. Doyle, Mun Hon Cheah, Thomas Fransson, Petko Chernev, In-Sik Kim, Hiroki Makita, Medhanjali Dasgupta, Corey J. Kaminsky, Miao Zhang, Julia Gätcke, Stephanie Haupt, Isabela I. Nangca, Stephen M. Keable, A. Orkun Aydin, Kensuke Tono, Shigeki Owada, Leland B. Gee, Franklin D. Fuller, Alexander Batyuk, Roberto Alonso-Mori, James M. Holton, Daniel W. Paley, Nigel W. Moriarty, Fikret Mamedov, Paul D. Adams, Aaron S. Brewster, Holger Dobbek, Nicholas K. Sauter, Uwe Bergmann, Athina Zouni, Johannes Messinger, Jan Kern, Junko Yano, and Vittal K. Yachandra
- Subjects
Fysikalisk kemi ,Multidisciplinary ,Biochemistry and Molecular Biology ,Physical Chemistry ,Biokemi och molekylärbiologi - Abstract
In natural photosynthesis, the light-driven splitting of water into electrons, protons and molecular oxygen forms the first step of the solar-to-chemical energy conversion process. The reaction takes place in photosystem II, where the Mn4CaO5 cluster first stores four oxidizing equivalents, the S0 to S4 intermediate states in the Kok cycle, sequentially generated by photochemical charge separations in the reaction center and then catalyzes the O–O bond formation chemistry1–3. Here, we report room temperature snapshots by serial femtosecond X-ray crystallography to provide structural insights into the final reaction step of Kok’s photosynthetic water oxidation cycle, the S3→[S4]→S0 transition where O2 is formed and Kok’s water oxidation clock is reset. Our data reveal a complex sequence of events, which occur over micro- to milliseconds, comprising changes at the Mn4CaO5 cluster, its ligands and water pathways as well as controlled proton release through the hydrogen-bonding network of the Cl1 channel. Importantly, the extra O atom Ox, which was introduced as a bridging ligand between Ca and Mn1 during the S2→S3 transition4–6, disappears or relocates in parallel with Yz reduction starting at approximately 700 μs after the third flash. The onset of O2 evolution, as indicated by the shortening of the Mn1–Mn4 distance, occurs at around 1,200 μs, signifying the presence of a reduced intermediate, possibly a bound peroxide.
- Published
- 2023
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