69 results on '"Zhuyun Liu"'
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2. From concept to delivery: a yeast-expressed recombinant protein-based COVID-19 vaccine technology suitable for global access
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Peter J. Hotez, Rakesh Adhikari, Wen-Hsiang Chen, Yi-Lin Chen, Portia Gillespie, Nelufa Y. Islam, Brian Keegan, Rakhi Tyagi Kundu, Jungsoon Lee, Zhuyun Liu, Jason T. Kimata, Numan Oezguen, Jeroen Pollet, Cristina Poveda, Kay Razavi, Shannon E. Ronca, Ulrich Strych, Syamala R. Thimmiraju, Leroy Versteeg, Maria Jose Villar-Mondragon, Junfei Wei, Bin Zhan, and Maria Elena Bottazzi
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sars ,sars-cov-2 ,covid-19 ,vaccine ,recombinant protein ,microbial fermentation ,corbevax ,indovac ,Internal medicine ,RC31-1245 - Abstract
Introduction The development of a yeast-expressed recombinant protein-based vaccine technology co-developed with LMIC vaccine producers and suitable as a COVID-19 vaccine for global access is described. The proof-of-concept for developing a SARS-CoV-2 spike protein receptor-binding domain (RBD) antigen as a yeast-derived recombinant protein vaccine technology is described. Areas Covered Genetic Engineering: The strategy is presented for the design and genetic modification used during cloning and expression in the yeast system. Process and Assay Development: A summary is presented of how a scalable, reproducible, and robust production process for the recombinant protein COVID-19 vaccine antigen was developed. Formulation and Pre-clinical Strategy: We report on the pre-clinical and formulation strategy used for the proof-of-concept evaluation of the SARS-CoV-2 RBD vaccine antigen. Technology Transfer and Partnerships: The process used for the technology transfer and co-development with LMIC vaccine producers is described. Clinical Development and Delivery: The approach used by LMIC developers to establish the industrial process, clinical development, and deployment is described. Expert Opinion Highlighted is an alternative model for developing new vaccines for emerging infectious diseases of pandemic importance starting with an academic institution directly transferring their technology to LMIC vaccine producers without the involvement of multinational pharma companies.
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- 2023
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3. A Recombinant Protein XBB.1.5 RBD/Alum/CpG Vaccine Elicits High Neutralizing Antibody Titers against Omicron Subvariants of SARS-CoV-2
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Syamala Rani Thimmiraju, Rakesh Adhikari, Maria Jose Villar, Jungsoon Lee, Zhuyun Liu, Rakhi Kundu, Yi-Lin Chen, Suman Sharma, Karm Ghei, Brian Keegan, Leroy Versteeg, Portia M. Gillespie, Allan Ciciriello, Nelufa Y. Islam, Cristina Poveda, Nestor Uzcategui, Wen-Hsiang Chen, Jason T. Kimata, Bin Zhan, Ulrich Strych, Maria Elena Bottazzi, Peter J. Hotez, and Jeroen Pollet
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immune escape ,vaccine efficacy ,COVID-19 ,SARS-CoV-2 ,Medicine - Abstract
(1) Background: We previously reported the development of a recombinant protein SARS-CoV-2 vaccine, consisting of the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein, adjuvanted with aluminum hydroxide (alum) and CpG oligonucleotides. In mice and non-human primates, our wild-type (WT) RBD vaccine induced high neutralizing antibody titers against the WT isolate of the virus, and, with partners in India and Indonesia, it was later developed into two closely resembling human vaccines, Corbevax and Indovac. Here, we describe the development and characterization of a next-generation vaccine adapted to the recently emerging XBB variants of SARS-CoV-2. (2) Methods: We conducted preclinical studies in mice using a novel yeast-produced SARS-CoV-2 XBB.1.5 RBD subunit vaccine candidate formulated with alum and CpG. We examined the neutralization profile of sera obtained from mice vaccinated twice intramuscularly at a 21-day interval with the XBB.1.5-based RBD vaccine, against WT, Beta, Delta, BA.4, BQ.1.1, BA.2.75.2, XBB.1.16, XBB.1.5, and EG.5.1 SARS-CoV-2 pseudoviruses. (3) Results: The XBB.1.5 RBD/CpG/alum vaccine elicited a robust antibody response in mice. Furthermore, the serum from vaccinated mice demonstrated potent neutralization against the XBB.1.5 pseudovirus as well as several other Omicron pseudoviruses. However, regardless of the high antibody cross-reactivity with ELISA, the anti-XBB.1.5 RBD antigen serum showed low neutralizing titers against the WT and Delta virus variants. (4) Conclusions: Whereas we observed modest cross-neutralization against Omicron subvariants with the sera from mice vaccinated with the WT RBD/CpG/Alum vaccine or with the BA.4/5-based vaccine, the sera raised against the XBB.1.5 RBD showed robust cross-neutralization. These findings underscore the imminent opportunity for an updated vaccine formulation utilizing the XBB.1.5 RBD antigen.
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- 2023
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4. SARS‑CoV-2 RBD219-N1C1: A yeast-expressed SARS-CoV-2 recombinant receptor-binding domain candidate vaccine stimulates virus neutralizing antibodies and T-cell immunity in mice
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Jeroen Pollet, Wen-Hsiang Chen, Leroy Versteeg, Brian Keegan, Bin Zhan, Junfei Wei, Zhuyun Liu, Jungsoon Lee, Rahki Kundu, Rakesh Adhikari, Cristina Poveda, Maria Jose Villar, Ana Carolina de Araujo Leao, Joanne Altieri Rivera, Zoha Momin, Portia M. Gillespie, Jason T. Kimata, Ulrich Strych, Peter J. Hotez, and Maria Elena Bottazzi
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covid-19 ,rbd ,alum ,pseudovirus ,coronavirus ,ace-2 ,Immunologic diseases. Allergy ,RC581-607 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
There is an urgent need for an accessible and low-cost COVID-19 vaccine suitable for low- and middle-income countries. Here, we report on the development of a SARS-CoV-2 receptor-binding domain (RBD) protein, expressed at high levels in yeast (Pichia pastoris), as a suitable vaccine candidate against COVID-19. After introducing two modifications into the wild-type RBD gene to reduce yeast-derived hyperglycosylation and improve stability during protein expression, we show that the recombinant protein, RBD219-N1C1, is equivalent to the wild-type RBD recombinant protein (RBD219-WT) in an in vitro ACE-2 binding assay. Immunogenicity studies of RBD219-N1C1 and RBD219-WT proteins formulated with Alhydrogel® were conducted in mice, and, after two doses, both the RBD219-WT and RBD219-N1C1 vaccines induced high levels of binding IgG antibodies. Using a SARS-CoV-2 pseudovirus, we further showed that sera obtained after a two-dose immunization schedule of the vaccines were sufficient to elicit strong neutralizing antibody titers in the 1:1,000 to 1:10,000 range, for both antigens tested. The vaccines induced IFN-γ IL-6, and IL-10 secretion, among other cytokines. Overall, these data suggest that the RBD219-N1C1 recombinant protein, produced in yeast, is suitable for further evaluation as a human COVID-19 vaccine, in particular, in an Alhydrogel® containing formulation and possibly in combination with other immunostimulants.
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- 2021
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5. A Multi-Organ Fusion and LightGBM Based Radiomics Algorithm for High-Risk Esophageal Varices Prediction in Cirrhotic Patients
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Lijuan Li, Yiken Lin, Dexin Yu, Zhuyun Liu, Yanjing Gao, and Jianping Qiao
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Radiomics ,esophageal varices ,multi-organ feature fusion ,classifier ensemble ,LightGBM ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Esophageal varices (EV) is the most common complication of portal hypertension in cirrhosis patients. Radiomics has been progressing remarkably for quantifying the state of diseases. However, there are few studies on EV severity prediction by applying radiomics and machine learning. Besides, most of the existing methods apply only single organ for radiomics feature extraction. In this study, we propose a radiomics algorithm based on light gradient boosting machine (LightGBM) to identify high-risk and low-risk EV patients by fusing the radiomics features of liver, spleen and esophagus from the CT images. This approach involves 188 patients, including 151 cirrhotic patients (84 patients with severe EV and 67 patients with mild or no EV) registered in Qilu Hospital of Shandong University and 37 cirrhotic patients (20 patients with severe EV and 17 patients with mild or no EV) retrospectively registered in Jinan Central Hospital from January 2018 to August 2020. Specifically, the radiomics features of liver, spleen and esophagus are extracted after manual segmentation. Then the features of the three organs are fused by linear combination where the weights are estimated by the feature distribution. Finally, classification models are established by cross-combination of multiple feature selection methods (e.g., least absolute shrinkage and selection operator, Boruta, eXtreme gradient boosting (XGBoost) and LightGBM) with multiple classifiers (e.g., support vector machine, random forests, XGBoost and LightGBM) to discriminate the high-risk EV patients from the low-risk EV patients at the individual level. In addition, we propose a classifier ensemble strategy by combining the prediction probability of each organ for final classification. Experimental results demonstrate that the feature of esophageal makes a greater contribution on the diagnosis of EV compared with that of spleen and liver. The proposed multi-organ fusion and LightGBM based radiomics framework has better classification performance compared with the state-of-the-art radiomics approaches.
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- 2021
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6. Classification of Alzheimer’s Disease Based on Abnormal Hippocampal Functional Connectivity and Machine Learning
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Qixiao Zhu, Yonghui Wang, Chuanjun Zhuo, Qunxing Xu, Yuan Yao, Zhuyun Liu, Yi Li, Zhao Sun, Jian Wang, Ming Lv, Qiang Wu, and Dawei Wang
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Alzheimer’s disease ,hippocampus ,functional connectivity ,classification ,SVM ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
ObjectiveAlzheimer’s disease (AD) is a neurodegenerative disease characterized by progressive deterioration of memory and cognition. Mild cognitive impairment (MCI) has been implicated as a prodromal phase of AD. Although abnormal functional connectivity (FC) has been demonstrated in AD and MCI, the clinical differentiation of AD, MCI, and normal aging remains difficult, and the distinction between MCI and normal aging is especially problematic. We hypothesized that FC between the hippocampus and other brain structures is altered in AD and MCI, and that measurement of abnormal FC could have diagnostic utility for the classification of different AD stages.MethodsElderly adults aged 60–85 years were assigned to AD, MCI, or normal control (NC) groups based on clinical criteria. Functional magnetic resonance scanning was completed by 119 subjects. Five dimension reduction/classification methods were applied, using hippocampus-derived FC strengths as input features. Classification performance of the five dimensionality reduction methods was compared between AD, MCI, and NC groups.ResultsFCs between the hippocampus and left insula, left thalamus, cerebellum, right lingual gyrus, posterior cingulate cortex, and precuneus were significantly reduced in AD and MCI. Support vector machine learning coupled with sparse principal component analysis demonstrated the best discriminative performance, yielding classification accuracies of 82.02% (AD vs. NC), 81.33% (MCI vs. NC), and 81.08% (AD vs. MCI).ConclusionHippocampus-seed-based FCs were significantly different between AD, MCI, and NC groups. FC assessment combined with widely used machine learning methods can improve AD differential diagnosis, and may be especially useful to distinguish MCI from normal aging.
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- 2022
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7. Protective immunity elicited by the nematode-conserved As37 recombinant protein against Ascaris suum infection.
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Leroy Versteeg, Junfei Wei, Zhuyun Liu, Brian Keegan, Ricardo T Fujiwara, Kathryn M Jones, Oluwatoyin Asojo, Ulrich Strych, Maria Elena Bottazzi, Peter J Hotez, and Bin Zhan
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
BACKGROUND:Ascaris lumbricoides is one of the three major soil-transmitted gastrointestinal helminths (STHs) that infect more than 440 million people in the world, ranking this neglected tropical disease among the most common afflictions of people living in poverty. Children infected with this roundworm suffer from malnutrition, growth stunting as well as cognitive and intellectual deficits. An effective vaccine is urgently needed to complement anthelmintic deworming as a better approach to control helminth infections. As37 is an immunodominant antigen of Ascaris suum, a pig roundworm closely related to the human A. lumbricoides parasite, recognized by protective immune sera from A. suum infected mice. In this study, the immunogenicity and vaccine efficacy of recombinant As37 were evaluated in a mouse model. METHODOLOGY/PRINCIPAL FINDINGS:As37 was cloned and expressed as a soluble recombinant protein (rAs37) in Escherichia coli. The expressed rAs37 was highly recognized by protective immune sera from A. suum egg-infected mice. Balb/c mice immunized with 25 μg rAs37 formulated with AddaVax™ adjuvant showed significant larval worm reduction after challenge with A. suum infective eggs when compared with a PBS (49.7%) or adjuvant control (48.7%). Protection was associated with mixed Th1/2-type immune responses characterized by high titers of serological IgG1 and IgG2a and stimulation of the production of cytokines IL-4, IL-5, IL-10 and IL-13. In this experiment, the AddaVax™ adjuvant induced better protection than the Th1-type adjuvant MPLA (38.9%) and the Th2-type adjuvant Alhydrogel (40.7%). Sequence analysis revealed that As37 is a member of the immunoglobulin superfamily (IgSF) and highly conserved in other human STHs. Anti-As37 antibodies strongly recognized homologs in hookworms (Necator americanus, Ancylostoma ceylanicum, A. caninum) and in the whipworm Trichuris muris, but there was no cross-reaction with human spleen tissue extracts. These results suggest that the nematode-conserved As37 could serve as a pan-helminth vaccine antigen to prevent all STH infections without cross-reaction with human IgSF molecules. CONCLUSIONS/SIGNIFICANCE:As37 is an A. suum expressed immunodominant antigen that elicited significant protective immunity in mice when formulated with AddaVax™. As37 is highly conserved in other STHs, but not in humans, suggesting it could be further developed as a pan-helminth vaccine against STH co-infections.
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- 2020
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8. Cysteine mutagenesis improves the production without abrogating antigenicity of a recombinant protein vaccine candidate for human chagas disease
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Christopher A. Seid, Kathryn M. Jones, Jeroen Pollet, Brian Keegan, Elissa Hudspeth, Molly Hammond, Junfei Wei, C. Patrick McAtee, Leroy Versteeg, Amanda Gutierrez, Zhuyun Liu, Bin Zhan, Jonathan L. Respress, Ulrich Strych, Maria Elena Bottazzi, and Peter J. Hotez
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antigen ,chagas disease ,pre-clinical testing ,production ,vaccine ,Immunologic diseases. Allergy ,RC581-607 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
A therapeutic vaccine for human Chagas disease is under development by the Sabin Vaccine Institute Product Development Partnership. The aim of the vaccine is to significantly reduce the parasite burden of Trypanosoma cruzi in humans, either as a standalone product or in combination with conventional chemotherapy. Vaccination of mice with Tc24 formulated with monophosphoryl-lipid A (MPLA) adjuvant results in a Th1 skewed immune response with elevated IgG2a and IFNγ levels and a statistically significant decrease in parasitemia following T. cruzi challenge. Tc24 was therefore selected for scale-up and further evaluation. During scale up and downstream process development, significant protein aggregation was observed due to intermolecular disulfide bond formation. To prevent protein aggregation, cysteine codons were replaced with serine codons which resulted in the production of a non-aggregated and soluble recombinant protein, Tc24-C4. No changes to the secondary structure of the modified molecule were detected by circular dichroism. Immunization of mice with wild-type Tc24 or Tc24-C4, formulated with E6020 (TLR4 agonist analog to MPLA) emulsified in a squalene-oil-in-water emulsion, resulted in IgG2a and antigen specific IFNγ production levels from splenocytes that were not significantly different, indicating that eliminating putative intermolecular disulfide bonds had no significant impact on the immunogenicity of the molecule. In addition, vaccination with either formulated wild type Tc24 or Tc24-C4 antigen also significantly increased survival and reduced cardiac parasite burden in mice. Investigations are now underway to examine the efficacy of Tc24-C4 formulated with other adjuvants to reduce parasite burden and increase survival in pre-clinical studies.
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- 2017
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9. Space-Time Hybrid Model for Short-Time Travel Speed Prediction
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Qi Fan, Wei Wang, Xiaojian Hu, Xuedong Hua, and Zhuyun Liu
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Mathematics ,QA1-939 - Abstract
Short-time traffic speed forecasting is a significant issue for developing Intelligent Transportation Systems applications, and accurate speed forecasting results are necessary inputs for Intelligent Traffic Security Information System (ITSIS) and advanced traffic management systems (ATMS). This paper presents a hybrid model for travel speed based on temporal and spatial characteristics analysis and data fusion. This proposed methodology predicts speed by dividing the data into three parts: a periodic trend estimated by Fourier series, a residual part modeled by the ARIMA model, and the possible events affected by upstream or downstream traffic conditions. The aim of this study is to improve the accuracy of the prediction by modeling time and space variation of speed, and the forecast results could simultaneously reflect the periodic variation of traffic speed and emergencies. This information could provide decision-makers with a basis for developing traffic management measures. To achieve the research objective, one year of speed data was collected in Twin Cities Metro, Minnesota. The experimental results demonstrate that the proposed method can be used to explore the periodic characteristics of speed data and show abilities in increasing the accuracy of travel speed prediction.
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- 2018
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10. Yeast-expressed recombinant As16 protects mice against Ascaris suum infection through induction of a Th2-skewed immune response.
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Junfei Wei, Leroy Versteeg, Zhuyun Liu, Brian Keegan, Ana Clara Gazzinelli-Guimarães, Ricardo T Fujiwara, Neima Briggs, Kathryn M Jones, Ulrich Strych, Coreen M Beaumier, Maria Elena Bottazzi, Peter J Hotez, and Bin Zhan
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
BACKGROUND:Ascariasis remains the most common helminth infection in humans. As an alternative or complementary approach to global deworming, a pan-anthelminthic vaccine is under development targeting Ascaris, hookworm, and Trichuris infections. As16 and As14 have previously been described as two genetically related proteins from Ascaris suum that induced protective immunity in mice when formulated with cholera toxin B subunit (CTB) as an adjuvant, but the exact protective mechanism was not well understood. METHODOLOGY/PRINCIPAL FINDINGS:As16 and As14 were highly expressed as soluble recombinant proteins (rAs16 and rAs14) in Pichia pastoris. The yeast-expressed rAs16 was highly recognized by immune sera from mice infected with A. suum eggs and elicited 99.6% protection against A. suum re-infection. Mice immunized with rAs16 formulated with ISA720 displayed significant larva reduction (36.7%) and stunted larval development against A. suum eggs challenge. The protective immunity was associated with a predominant Th2-type response characterized by high titers of serological IgG1 (IgG1/IgG2a > 2000) and high levels of IL-4 and IL-5 produced by restimulated splenocytes. A similar level of protection was observed in mice immunized with rAs16 formulated with alum (Alhydrogel), known to induce mainly a Th2-type immune response, whereas mice immunized with rAs16 formulated with MPLA or AddaVax, both known to induce a Th1-type biased response, were not significantly protected against A. suum infection. The rAs14 protein was not recognized by A. suum infected mouse sera and mice immunized with rAs14 formulated with ISA720 did not show significant protection against challenge infection, possibly due to the protein's inaccessibility to the host immune system or a Th1-type response was induced which would counter a protective Th2-type response. CONCLUSIONS/SIGNIFICANCE:Yeast-expressed rAs16 formulated with ISA720 or alum induced significant protection in mice against A. suum egg challenge that associates with a Th2-skewed immune response, suggesting that rAS16 could be a feasible vaccine candidate against ascariasis.
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- 2017
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11. Structure of SALO, a leishmaniasis vaccine candidate from the sand fly Lutzomyia longipalpis.
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Oluwatoyin A Asojo, Alan Kelleher, Zhuyun Liu, Jeroen Pollet, Elissa M Hudspeth, Wanderson C Rezende, Mallory Jo Groen, Christopher A Seid, Maha Abdeladhim, Shannon Townsend, Waldione de Castro, Antonio Mendes-Sousa, Daniella Castanheira Bartholomeu, Ricardo Toshio Fujiwara, Maria Elena Bottazzi, Peter J Hotez, Bin Zhan, Fabiano Oliveira, Shaden Kamhawi, and Jesus G Valenzuela
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
BACKGROUND:Immunity to the sand fly salivary protein SALO (Salivary Anticomplement of Lutzomyia longipalpis) protected hamsters against Leishmania infantum and L. braziliensis infection and, more recently, a vaccine combination of a genetically modified Leishmania with SALO conferred strong protection against L. donovani infection. Because of the importance of SALO as a potential component of a leishmaniasis vaccine, a plan to produce this recombinant protein for future scale manufacturing as well as knowledge of its structural characteristics are needed to move SALO forward for the clinical path. METHODOLOGY/PRINCIPAL FINDINGS:Recombinant SALO was expressed as a soluble secreted protein using Pichia pastoris, rSALO(P), with yields of 1g/L and >99% purity as assessed by SEC-MALS and SDS-PAGE. Unlike its native counterpart, rSALO(P) does not inhibit the classical pathway of complement; however, antibodies to rSALO(P) inhibit the anti-complement activity of sand fly salivary gland homogenate. Immunization with rSALO(P) produces a delayed type hypersensitivity response in C57BL/6 mice, suggesting rSALO(P) lacked anti-complement activity but retained its immunogenicity. The structure of rSALO(P) was solved by S-SAD at Cu-Kalpha to 1.94 Å and refined to Rfactor 17%. SALO is ~80% helical, has no appreciable structural similarities to any human protein, and has limited structural similarity in the C-terminus to members of insect odorant binding proteins. SALO has three predicted human CD4+ T cell epitopes on surface exposed helices. CONCLUSIONS/SIGNIFICANCE:The results indicate that SALO as expressed and purified from P. pastoris is suitable for further scale-up, manufacturing, and testing. SALO has a novel structure, is not similar to any human proteins, is immunogenic in rodents, and does not have the anti-complement activity observed in the native salivary protein which are all important attributes to move this vaccine candidate forward to the clinical path.
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- 2017
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12. Identification, Characterization, and Structure of Tm16 from Trichuris muris
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Zhuyun Liu, Alan Kelleher, Shanii Tabb, Junfei Wei, Jeroen Pollet, Peter J. Hotez, Maria Elena Bottazzi, Bin Zhan, and Oluwatoyin A. Asojo
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Infectious and parasitic diseases ,RC109-216 - Abstract
Trichuriasis is a disease of poverty for which excretory and secretory (ES) products that induce the protective immunity are being investigated as candidate vaccines antigens. In this study, ES products of T. muris and immune sera were produced. The immune sera recognized more than 20 proteins on a 2D-gel of ES products of T. muris adult worms. Tm16 was one of the proteins identified by mass spectrometry. Tm16 shares 57% sequence identity with Ov16, an immunodominant diagnostic antigen from Onchocerca volvulus. Recombinant Tm16 with a carboxyl terminal hexahistidine was produced using Pichia pastoris. Polyclonal antibodies against rTm16 were generated by one-prime and two-boost immunization of three female Balb/c mice with 25 μg of recombinant Tm16 emulsified with ISA720 adjuvant. These polyclonal antibodies confirmed that Tm16 is localized to the ES products and the soluble fraction of the adult worm. Additionally, the high-resolution crystal structure of Tm16 was solved by molecular replacement. Tm16 belongs to the phosphatidylethanolamine-binding-like protein (PEBP1) family and this is the first structure of a PEBP1 from a parasite.
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- 2017
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13. Vaccination of Gerbils with Bm-103 and Bm-RAL-2 Concurrently or as a Fusion Protein Confers Consistent and Improved Protection against Brugia malayi Infection.
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Sridhar Arumugam, Junfei Wei, Zhuyun Liu, David Abraham, Aaron Bell, Maria Elena Bottazzi, Peter J Hotez, Bin Zhan, Sara Lustigman, and Thomas R Klei
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Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
BACKGROUND:The Brugia malayi Bm-103 and Bm-RAL-2 proteins are orthologous to Onchocerca volvulus Ov-103 and Ov-RAL-2, and which were selected as the best candidates for the development of an O. volvulus vaccine. The B. malayi gerbil model was used to confirm the efficacy of these Ov vaccine candidates on adult worms and to determine whether their combination is more efficacious. METHODOLOGY AND PRINCIPLE FINDINGS:Vaccine efficacy of recombinant Bm-103 and Bm-RAL-2 administered individually, concurrently or as a fusion protein were tested in gerbils using alum as adjuvant. Vaccination with Bm-103 resulted in worm reductions of 39%, 34% and 22% on 42, 120 and 150 days post infection (dpi), respectively, and vaccination with Bm-RAL-2 resulted in worm reductions of 42%, 22% and 46% on 42, 120 and 150 dpi, respectively. Vaccination with a fusion protein comprised of Bm-103 and Bm-RAL-2 resulted in improved efficacy with significant reduction of worm burden of 51% and 49% at 90 dpi, as did the concurrent vaccination with Bm-103 and Bm-RAL-2, with worm reduction of 61% and 56% at 90 dpi. Vaccination with Bm-103 and Bm-RAL-2 as a fusion protein or concurrently not only induced a significant worm reduction of 61% and 42%, respectively, at 150 dpi, but also significantly reduced the fecundity of female worms as determined by embryograms. Elevated levels of antigen-specific IgG were observed in all vaccinated gerbils. Serum from gerbils vaccinated with Bm-103 and Bm-RAL-2 individually, concurrently or as a fusion protein killed third stage larvae in vitro when combined with peritoneal exudate cells. CONCLUSION:Although vaccination with Bm-103 and Bm-RAL-2 individually conferred protection against B. malayi infection in gerbils, a more consistent and enhanced protection was induced by vaccination with Bm-103 and Bm-RAL-2 fusion protein and when they were used concurrently. Further characterization and optimization of these filarial vaccines are warranted.
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- 2016
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14. A genome-wide analysis of small regulatory RNAs in the human pathogen group A Streptococcus.
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Nataly Perez, Jeanette Treviño, Zhuyun Liu, Siu Chun Michael Ho, Paul Babitzke, and Paul Sumby
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Medicine ,Science - Abstract
The coordinated regulation of gene expression is essential for pathogens to infect and cause disease. A recently appreciated mechanism of regulation is that afforded by small regulatory RNA (sRNA) molecules. Here, we set out to assess the prevalence of sRNAs in the human bacterial pathogen group A Streptococcus (GAS). Genome-wide identification of candidate GAS sRNAs was performed through a tiling Affymetrix microarray approach and identified 40 candidate sRNAs within the M1T1 GAS strain MGAS2221. Together with a previous bioinformatic approach this brings the number of novel candidate sRNAs in GAS to 75, a number that approximates the number of GAS transcription factors. Transcripts were confirmed by Northern blot analysis for 16 of 32 candidate sRNAs tested, and the abundance of several of these sRNAs were shown to be temporally regulated. Six sRNAs were selected for further study and the promoter, transcriptional start site, and Rho-independent terminator identified for each. Significant variation was observed between the six sRNAs with respect to their stability during growth, and with respect to their inter- and/or intra-serotype-specific levels of abundance. To start to assess the contribution of sRNAs to gene regulation in M1T1 GAS we deleted the previously described sRNA PEL from four clinical isolates. Data from genome-wide expression microarray, quantitative RT-PCR, and Western blot analyses are consistent with PEL having no regulatory function in M1T1 GAS. The finding that candidate sRNA molecules are prevalent throughout the GAS genome provides significant impetus to the study of this fundamental gene-regulatory mechanism in an important human pathogen.
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- 2009
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15. Exploration of novel hexahydropyrrolo[1,2-e]imidazol-1-one derivatives as antiviral agents against ZIKV and USUV
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Ran Chen, Rachele Francese, Na Wang, Feng Li, Xia Sun, Bin Xu, Jinsong Liu, Zhuyun Liu, Manuela Donalisio, David Lembo, and Guo-Chun Zhou
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Pharmacology ,Antiviral agents ,Organic Chemistry ,Drug Discovery ,Hexahydropyrrolo[1,2-e]imidazole-1-one ,Structure-activity relationship ,Usutu virus ,Zika virus ,2-e]imidazole-1-one ,General Medicine ,Hexahydropyrrolo[1 - Published
- 2023
16. Facile Synthesis of New Imidazo[4',5':4,5]benzo[1,2-d] isoxazol-6-one Derivatives and In Silico Studies of Their Drug-like Profiles
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Zhuyun Liu, Maofeng Zhang, Lizhong Wang, and Xingli Yan
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Drug ,Drug development ,Chemistry ,media_common.quotation_subject ,In silico ,Organic Chemistry ,Combinatorial chemistry ,Small molecule ,media_common - Abstract
Heterocycles represent a crucial class of organic compounds, in part due to their numerous applications in the field of drug development. It was found that 85% of the 104 small molecule drugs appro...
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- 2021
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17. CspZ FH-Binding Sites as Epitopes Promote Antibody-Mediated Lyme Borreliae Clearance
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Yi-Lin Chen, Ashley L. Marcinkiewicz, Tristan A. Nowak, Rakhi Tyagi Kundu, Zhuyun Liu, Ulrich Strych, Maria-Elena Bottazzi, Wen-Hsiang Chen, and Yi-Pin Lin
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Lyme Disease ,Binding Sites ,Ixodes ,Borrelia ,Immunology ,Microbiology ,Antibodies ,Epitopes ,Mice ,Infectious Diseases ,Borrelia burgdorferi Group ,Complement Factor H ,Microbial Immunity and Vaccines ,Animals ,Parasitology - Abstract
Transmitted by ticks, the bacterium Borrelia burgdorferi sensu lato (Bbsl) is the causative agent of Lyme disease (LD), the most common vector-borne disease in the Northern hemisphere. No effective vaccines are currently available. Bbsl produces the CspZ protein that binds to the complement inhibitor, Factor H (FH), promoting evasion of the host complement system. We previously showed that while vaccination with CspZ did not protect mice from Bb infection, mice can be protected after immunization with CspZ-Y207A/Y211A (CspZ-YA), a CspZ mutant protein without FH-binding activity. To further study the mechanism of this protection, herein we evaluated both poly-and monoclonal antibodies recognizing CspZ FH-binding or non-FH-binding sites. We found that the anti-CspZ antibodies that recognize the FH-binding sites (i.e., block FH-binding activity) more efficiently eliminate Bbsl in vitro than those that bind to the non-FH-binding sites, and passive inoculation with anti-FH binding site antibodies eradicated Bbsl in vivo. Antibodies against non-FH-binding sites did not have the same effect. These results emphasize the importance of CspZ FH-binding sites in triggering a protective antibody response against Bbsl in future LD vaccines.
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- 2022
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18. SARS‑CoV-2 RBD219-N1C1: A yeast-expressed SARS-CoV-2 recombinant receptor-binding domain candidate vaccine stimulates virus neutralizing antibodies and T-cell immunity in mice
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Brian Keegan, Jungsoon Lee, Rahki Kundu, Bin Zhan, Wen-Hsiang Chen, Zhuyun Liu, Portia M. Gillespie, Leroy Versteeg, Jeroen Pollet, Zoha Momin, Jason T. Kimata, Ana Carolina de Araujo Leao, Cristina Poveda, Maria Jose Villar, Rakesh Adhikari, Joanne Altieri Rivera, Maria Elena Bottazzi, Junfei Wei, Ulrich Strych, and Peter J. Hotez
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COVID-19 Vaccines ,T-Lymphocytes ,030231 tropical medicine ,Immunology ,coronavirus ,Saccharomyces cerevisiae ,Antibodies, Viral ,medicine.disease_cause ,Article ,Virus ,RBD ,law.invention ,Pichia pastoris ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,Antigen ,law ,medicine ,Animals ,Humans ,Immunology and Allergy ,030212 general & internal medicine ,Neutralizing antibody ,Coronavirus ,Pharmacology ,Mice, Inbred BALB C ,pseudovirus ,biology ,SARS-CoV-2 ,Ligand binding assay ,Immunogenicity ,COVID-19 ,biology.organism_classification ,Antibodies, Neutralizing ,Virology ,alum ,Saccharomycetales ,Spike Glycoprotein, Coronavirus ,Recombinant DNA ,biology.protein ,Antibody ,ACE-2 ,Research Article - Abstract
There is an urgent need for an accessible and low-cost COVID-19 vaccine suitable for low- and middle-income countries. Here we report on the development of a SARS-CoV-2 receptor-binding domain (RBD) protein, expressed at high levels in yeast (Pichia pastoris), as a suitable vaccine candidate against COVID-19. After introducing two modifications into the wild-type RBD gene to reduce yeast-derived hyperglycosylation and improve stability during protein expression, we show that the recombinant protein, RBD219-N1C1, is equivalent to the wild-type RBD recombinant protein (RBD219-WT) in anin vitroACE-2 binding assay. Immunogenicity studies of RBD219-N1C1 and RBD219-WT proteins formulated with Alhydrogel®were conducted in mice, and, after two doses, both the RBD219-WT and RBD219-N1C1 vaccines induced high levels of binding IgG antibodies. Using a SARS-CoV-2 pseudovirus, we further showed that sera obtained after a two-dose immunization schedule of the vaccines were sufficient to elicit strong neutralizing antibody titers in the 1:1,000 to 1:10,000 range, for both antigens tested. The vaccines induced IFN-γ, IL-6, and IL-10 secretion, among other cytokines. Overall, these data suggest that the RBD219-N1C1 recombinant protein, produced in yeast, is suitable for further evaluation as a human COVID-19 vaccine, in particular, in an Alhydrogel®containing formulation and possibly in combination with other immunostimulants.
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- 2021
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19. A Multi-Organ Fusion and LightGBM Based Radiomics Algorithm for High-Risk Esophageal Varices Prediction in Cirrhotic Patients
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Dexin Yu, Lijuan Li, Jianping Qiao, Yiken Lin, Yanjing Gao, and Zhuyun Liu
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General Computer Science ,Feature extraction ,Feature selection ,LightGBM ,03 medical and health sciences ,0302 clinical medicine ,Esophageal varices ,esophageal varices ,medicine ,General Materials Science ,Esophagus ,Radiomics ,business.industry ,General Engineering ,multi-organ feature fusion ,medicine.disease ,Random forest ,Support vector machine ,classifier ensemble ,medicine.anatomical_structure ,Feature (computer vision) ,030220 oncology & carcinogenesis ,030211 gastroenterology & hepatology ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,Gradient boosting ,business ,lcsh:TK1-9971 ,Algorithm - Abstract
Esophageal varices (EV) is the most common complication of portal hypertension in cirrhosis patients. Radiomics has been progressing remarkably for quantifying the state of diseases. However, there are few studies on EV severity prediction by applying radiomics and machine learning. Besides, most of the existing methods apply only single organ for radiomics feature extraction. In this study, we propose a radiomics algorithm based on light gradient boosting machine (LightGBM) to identify high-risk and low-risk EV patients by fusing the radiomics features of liver, spleen and esophagus from the CT images. This approach involves 188 patients, including 151 cirrhotic patients (84 patients with severe EV and 67 patients with mild or no EV) registered in Qilu Hospital of Shandong University and 37 cirrhotic patients (20 patients with severe EV and 17 patients with mild or no EV) retrospectively registered in Jinan Central Hospital from January 2018 to August 2020. Specifically, the radiomics features of liver, spleen and esophagus are extracted after manual segmentation. Then the features of the three organs are fused by linear combination where the weights are estimated by the feature distribution. Finally, classification models are established by cross-combination of multiple feature selection methods (e.g., least absolute shrinkage and selection operator, Boruta, eXtreme gradient boosting (XGBoost) and LightGBM) with multiple classifiers (e.g., support vector machine, random forests, XGBoost and LightGBM) to discriminate the high-risk EV patients from the low-risk EV patients at the individual level. In addition, we propose a classifier ensemble strategy by combining the prediction probability of each organ for final classification. Experimental results demonstrate that the feature of esophageal makes a greater contribution on the diagnosis of EV compared with that of spleen and liver. The proposed multi-organ fusion and LightGBM based radiomics framework has better classification performance compared with the state-of-the-art radiomics approaches.
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- 2021
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20. Process Characterization and Biophysical Analysis for a Yeast-Expressed Phlebotomus papatasi Salivary Protein (PpSP15) as a Leishmania Vaccine Candidate
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Rakhi Tyagi Kundu, Wen-Hsiang Chen, Mun Peak Nyon, Amadeo B. Biter, Peter J. Hotez, Ulrich Strych, Maria Elena Bottazzi, Mohan Vivekanandan Poongavanam, and Zhuyun Liu
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Pharmaceutical Science ,Saccharomyces cerevisiae ,02 engineering and technology ,030226 pharmacology & pharmacy ,Microbiology ,law.invention ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Cutaneous leishmaniasis ,law ,medicine ,Animals ,Parasite hosting ,Leishmania major ,Salivary Proteins and Peptides ,Leishmaniasis Vaccines ,biology ,Tropical disease ,021001 nanoscience & nanotechnology ,medicine.disease ,biology.organism_classification ,Leishmania ,Yeast ,Sandfly ,Phlebotomus ,Recombinant DNA ,Insect Proteins ,0210 nano-technology - Abstract
Cutaneous leishmaniasis is a neglected tropical disease caused by the parasite Leishmania and transmitted by sandflies. It has become a major health problem in many tropical and subtropical countries, especially in regions of conflict and political instability. Currently, there are only limited drug treatments and no available licensed vaccine; thus, the need for more therapeutic interventions remains urgent. Previously, a DNA vaccine encoding a 15 kDa sandfly (Phlebotomus papatasi) salivary protein (PpSP15) and recombinant nonpathogenic Leishmania tarentolae secreting PpSP15 have been shown to induce protective immunity against Leishmania major in mice, demonstrating that PpSP15 is a promising vaccine candidate. In this study, we developed a fermentation process in yeast with a yield of ~1g PpSP15/L and a scalable purification process consisting of only 2 chromatographic purification steps with high binding capacity for PpSP15, suggesting that PpSP15 can be produced economically. The biophysical/biochemical analysis of the purified PpSP15 indicated that the protein was of high purity (>97%) and conformationally stable between pH 4.4 and 9.0. More importantly, the recombinant protein had a defined structure similar to that of the related PdSP15 from Phlebotomus duboscqi, implying the suitability of the yeast expression system for producing a correctly folded PpSP15.
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- 2020
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21. Effect of Rare Earth Metal (RE = La, Pr, Nd, Y) Doping on Co–Ce Composite Oxide and Its Application in Catalytic Combustion of Chlorobenzene
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Yanhua Xu, Zhuyun Liu, Ping Wei, Lei Zhu, Zhiying Liu, Shunlong Pan, and Peng Yu
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Materials science ,Composite oxide ,General Chemical Engineering ,Rare earth ,Doping ,Inorganic chemistry ,Catalytic combustion ,02 engineering and technology ,General Chemistry ,021001 nanoscience & nanotechnology ,Industrial and Manufacturing Engineering ,Catalysis ,Metal ,chemistry.chemical_compound ,020401 chemical engineering ,chemistry ,Chlorobenzene ,visual_art ,visual_art.visual_art_medium ,0204 chemical engineering ,0210 nano-technology - Abstract
Rare earth metal (RE = La, Pr, Nd, Y)-doped CoCeOx catalysts were prepared and evaluated for eliminating chlorobenzene (CB). Characterization results showed that the doped RE metal simultaneously a...
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- 2020
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22. Effect of 1,25-Dihydroxyvitamin D3 on Stem Cells from Human Apical Papilla: Adhesion, Spreading, Proliferation, and Osteogenic Differentiation
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Jia Qian, Lijie Sun, Delin Xia, Zhuyun Liu, Jiaojiao Yang, Lizhong Wang, Yan Li, and Yonggang Ma
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Article Subject ,Adolescent ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Flow cytometry ,Andrology ,Calcitriol ,Transcription (biology) ,Cell Movement ,Osteogenesis ,medicine ,Cell Adhesion ,Humans ,Child ,Dental Papilla ,Cells, Cultured ,Pulp necrosis ,Cell Proliferation ,Periapical periodontitis ,General Immunology and Microbiology ,medicine.diagnostic_test ,Bone Density Conservation Agents ,Stem Cells ,Cell Differentiation ,General Medicine ,Adhesion ,medicine.disease ,RUNX2 ,Pulp (tooth) ,Odontogenesis ,Medicine ,Stem cell ,Research Article - Abstract
Currently, it still remains a difficult problem to treat apical insufficiency of young permanent teeth resulted from pulp necrosis or periapical periodontitis. Previous studies have demonstrated that the treatment of revascularization using stem cells from apical papilla (SCAPs) results in increased root length and thickness of traumatized immature teeth and necrotic pulp. In this study, we investigated the role of 1,25-dihydroxyvitamin D3 in regulating the adhesion, spreading, proliferation, and osteogenic differentiation of SCAP, laying the foundation for subsequent clinical drug development. The immature tooth samples were collected in clinical treatment. SCAPs with stable passage ability were isolated and cultured. The multidifferentiation potential was determined by directed induction culture, while the stem cell characteristics were identified by flow cytometry. There were three groups: group A—SCAPs general culture group; group B—SCAPs osteogenesis induction culture group; and group C—SCAPs osteogenesis induction culture+1,25-dihydroxyvitamin D3 group, and the groups were compared statistically. The proliferation of SCAPs in each groups was detected through CCK-8 assay. RT-qPCR was used to detect the transcription levels of Runx2, ALP, Col I, and OCN of SCAPs in each groups. Results exhibited that the isolated SCAPs had multidifferentiation potential and stem cell characteristics. After 24 h culturing, cells in group C spread better than those in groups A and B. The proliferation activity of SCAPs factored by CCK-8 ranked as group C > group B > group A , while the transcription levels of Runx2, ALP, Col I, and OCN leveled as group C > group B > group A . These results suggested that 1,25-dihydroxyvitamin D3 can significantly promote the adhesion, spreading, and proliferation of SACPs and improve the osteogenic differentiation of SCAPs by means of regulating upward the transcription level of osteogenic differentiation marker.
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- 2021
23. Receptor-binding domain recombinant protein on alum-CpG induces broad protection against SARS-CoV-2 variants of concern
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Rakhi Tyagi Kundu, Ulrich Strych, Peter J. Hotez, Wen-Hsiang Chen, Shannon E. Ronca, Vikram Paradkar, Maria Jose Villar, Jeroen Pollet, Martin Reers, Cristina Poveda, Rakesh Adhikari, Brian Keegan, Leroy Versteeg, Jason T. Kimata, Jungsoon Lee, Portia M. Gillespie, Bin Zhan, Junfei Wei, Zhuyun Liu, Maria Elena Bottazzi, and Brianna Lopez
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COVID-19 Vaccines ,chemical and pharmacologic phenomena ,Booster dose ,Antibodies, Viral ,complex mixtures ,Article ,law.invention ,chemistry.chemical_compound ,Mice ,Immune system ,law ,Animals ,Humans ,Neutralizing antibody ,COVID-19 Serotherapy ,biology ,General Veterinary ,General Immunology and Microbiology ,Chemistry ,Alum ,SARS-CoV-2 ,Public Health, Environmental and Occupational Health ,Immunization, Passive ,COVID-19 ,Virology ,Antibodies, Neutralizing ,Recombinant Proteins ,Titer ,Infectious Diseases ,CpG site ,Spike Glycoprotein, Coronavirus ,biology.protein ,Recombinant DNA ,Molecular Medicine ,Alum Compounds ,Antibody - Abstract
We conducted preclinical studies in mice using a yeast-produced SARS-CoV-2 RBD219-N1C1 subunit vaccine candidate formulated with aluminum hydroxide (alum) and CpG deoxynucleotides. This vaccine formulation is similar to one that entered advanced phase 3 clinical development in India. We compared the immune response of mice vaccinated with RBD219-N1C1/alum to mice vaccinated with RBD219-N1C1/alum+CpG. We also evaluated mice immunized with RBD219-N1C1/alum+CpG and boosted with RBD219-N1C1/alum. Mice were immunized twice intramuscularly at a 21-day interval. Compared to two doses of the RBD219-N1C1/alum formulation, the RBD219-N1C1/alum+CpG vaccine induced a stronger and more balanced Th1/Th2 cellular immune response, with high levels of neutralizing antibodies against the original Wuhan isolate of SARS-CoV-2 as well as the B.1.1.7 (Alpha), B.1.351 (Beta) and B.1.617.1 (Kappa) variants. Notably, the sera from mice that received two 7 µg doses of RBD219-N1C1/alum+CpG showed more than 18 times higher neutralizing antibody titers against B.1.351, than the WHO International Standard for anti-SARS-CoV-2 immunoglobulin NIBSC 20/136. Interestingly, a booster dose did not require the addition of CpG to induce this effect. The data reported here reinforces that the RBD219-N1C1/alum+CpG vaccine formulation is suitable for inducing broadly neutralizing antibodies against SARS-CoV-2 including three variants of concern, B.1.1.7 (Alpha), B.1.351 (Beta), and B.1.617.1 (Kappa).
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- 2021
24. The new andrographolide derivative AGS-30 induces apoptosis in human colon cancer cells by activating a ROS-dependent JNK signalling pathway
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George P.H. Leung, Jinming Zhang, Guo-Chun Zhou, Zhuyun Liu, Dekuan Sheng, Jingjing Li, Renkai Li, Simon Ming-Yuen Lee, Xiaoping Wu, and Kun Dai
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Andrographolide ,Pharmaceutical Science ,Caspase 3 ,Apoptosis ,chemistry.chemical_compound ,Mice ,Nude mouse ,Cell Line, Tumor ,Drug Discovery ,Animals ,Humans ,Pharmacology ,chemistry.chemical_classification ,Caspase-9 ,Reactive oxygen species ,biology ,biology.organism_classification ,In vitro ,Complementary and alternative medicine ,chemistry ,Cancer cell ,Colonic Neoplasms ,Cancer research ,biology.protein ,Molecular Medicine ,Diterpenes ,Reactive Oxygen Species - Abstract
Background : The anti-cancer activity of andrographolide (Andro) has been extensively demonstrated in recent years. It is supposed that modifying the chemical structure of Andro can improve its efficacy and reduce its toxicity. Purpose : In this study, the anti-cancer effect of a 14β-(2′-chlorophenoxy) derivative of andrographolide known as AGS-30 was investigated, and its underlying mechanisms were also explored. Study Design/Methods : Different cancer cells were used to evaluate and compare the in vitro anti-cancer effects of Andro and AGS-30. Human colon cancer cells HT-29 and HCT-116 were used to study the underlying anti-cancer mechanisms of AGS-30. HT-29 cells xenografted in nude mouse model was used to compare the in vivo anti-tumour efficacies of Andro and AGS-30. Result : In vitro studies showed that AGS-30 possessed an anti-cancer effect by inhibiting the viability, colony formation and migration of cancer cells. It significantly induced the generation of reactive oxygen species (ROS), caused the loss of mitochondrial membrane potential and triggered the apoptosis in colon cancer cells. These effects of AGS-30 were more potent than those of Andro. In addition, the expression levels of proteins associated with apoptosis, including phospho-JNK1/2 as well as cleaved caspase 9, caspase 3, and poly(ADP ribose) polymerase, were elevated in AGS-30-treated colon cancer cells. Moreover, these elevated levels of the proteins were inhibited by the antioxidant N-acetylcysteine and the JNK inhibitor SP600125, suggesting the involvement of ROS/JNK-dependent mechanisms in AGS-30-induced apoptosis. The in vitro anti-cancer effect could be reproduced in an HT-29 colon cancer cell xenografted nude mouse model. Conclusion : The anti-cancer effect of AGS-30 is stronger than that of Andro. AGS-30 induces apoptosis of colon cancer cells through ROS/JNK-dependent pathway. Our findings may provide insights for the future development of derivatives of Andro as novel chemotherapeutic agents.
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- 2021
25. A yeast expressed RBD-based SARS-CoV-2 vaccine formulated with 3M-052-alum adjuvant promotes protective efficacy in non-human primates
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Guido Ferrari, Neeta Shenvi, Thomas H. Vanderford, Susan Pereira Ribeiro, Wen-Hsiang Chen, David C. Montefiori, Talha Abid, Alessandro Sette, Daniela Weiskopf, Debashis Dutta, Katharine Floyd, Shelly Wang, Dieter Mielke, Sudhir Pai Kasturi, Georgia D. Tomaras, Pamela A. Kozlowski, Celia C. LaBranche, Maria Pino, Jungsoon Lee, Sherrie Jean, Venkata Viswanadh Edara, Xiaoying Shen, Justin Pollara, Justin C Smith, Mirko Paiardini, Rafick Pierre Sekaly, Fawn Connor-Stroud, Joyce Cohen, Gabriela Pacheco-Sanchez, Hongmei Gao, Zhuyun Liu, Christopher B. Fox, Sanjeev Gumber, Junfei Wei, Nathan Eisel, Maria Elena Bottazzi, Rachelle L. Stammen, Jennifer S. Wood, Shannon Kirejczyk, Bin Zhan, Muhammad Bilal Latif, Peter J. Hotez, Kirk Easley, Ulrich Strych, Jeroen Pollet, Mehul S. Suthar, and Mark A. Tomai
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0301 basic medicine ,CD4-Positive T-Lymphocytes ,Male ,Immunogen ,COVID-19 Vaccines ,T cell ,Immunology ,Biology ,CD8-Positive T-Lymphocytes ,Antibodies, Viral ,Immunoglobulin G ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Adjuvants, Immunologic ,Protein Domains ,Administration, Inhalation ,medicine ,Animals ,Humans ,Alum adjuvant ,Lung ,Administration, Intranasal ,SARS-CoV-2 ,COVID-19 ,General Medicine ,Viral Load ,Antibodies, Neutralizing ,Macaca mulatta ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Saccharomycetales ,Spike Glycoprotein, Coronavirus ,biology.protein ,Alum Compounds ,Cytokines ,Nasal administration ,Antibody ,Viral load ,Protein Binding - Abstract
Ongoing SARS-CoV-2 vaccine development is focused on identifying stable, cost-effective, and accessible candidates for global use, specifically in low and middle-income countries. Here, we report the efficacy of a rapidly scalable, novel yeast expressed SARS-CoV-2 specific receptor-binding domain (RBD) based vaccine in rhesus macaques. We formulated the RBD immunogen in alum, a licensed and an emerging alum adsorbed TLR-7/8 targeted, 3M-052-alum adjuvants. The RBD+3M-052-alum adjuvanted vaccine promoted better RBD binding and effector antibodies, higher CoV-2 neutralizing antibodies, improved Th1 biased CD4+T cell reactions, and increased CD8+ T cell responses when compared to the alum-alone adjuvanted vaccine. RBD+3M-052-alum induced a significant reduction of SARS-CoV-2 virus in respiratory tract upon challenge, accompanied by reduced lung inflammation when compared with unvaccinated controls. Anti-RBD antibody responses in vaccinated animals inversely correlated with viral load in nasal secretions and BAL. RBD+3M-052-alum blocked a post SARS-CoV-2 challenge increase in CD14+CD16++ intermediate blood monocytes, and Fractalkine, MCP-1, and TRAIL in the plasma. Decreased plasma analytes and intermediate monocyte frequencies correlated with reduced nasal and BAL viral loads. Lastly, RBD-specific plasma cells accumulated in the draining lymph nodes and not in the bone marrow, contrary to previous findings. Together, these data show that a yeast expressed, RBD-based vaccine+3M-052-alum provides robust immune responses and protection against SARS-CoV-2, making it a strong and scalable vaccine candidate.
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- 2021
26. A Novel Radiomics-Platelet Nomogram for the Prediction of Gastroesophageal Varices Needing Treatment in Cirrhotic Patients
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Dexin Yu, Zhuyun Liu, Qiuzhi Wang, Shuhong Zhang, Jianping Qiao, Yueyue Li, Lijuan Li, Yanjing Gao, Baoquan Cheng, and Yiken Lin
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Liver Cirrhosis ,medicine.medical_specialty ,Training set ,Hepatology ,medicine.diagnostic_test ,business.industry ,Computed tomography ,Nomogram ,Gastroesophageal varices ,Varicose Veins ,Multivariate logistic regression model ,Nomograms ,03 medical and health sciences ,0302 clinical medicine ,Radiomics ,030220 oncology & carcinogenesis ,Humans ,Medicine ,030211 gastroenterology & hepatology ,Prospective Studies ,Radiology ,Internal validation ,business ,Selection operator ,Retrospective Studies - Abstract
Background and aimsHighly accurate noninvasive methods for predicting gastroesophageal varices needing treatment (VNT) are desired. Radiomics is a newly emerging technology of image analysis. This study aims to develop and validate a novel noninvasive method based on radiomics for predicting VNT in cirrhosis.MethodsIn this retrospective-prospective study, a total of 245 cirrhotic patients were divided as the training set, internal validation set and external validation set. Radiomics features were extracted from portal-phase computed tomography (CT) images of each patient. A radiomics signature (Rad-score) was constructed with the least absolute shrinkage and selection operator algorithm and 10-folds cross-validation in the training set. Combined with independent risk factors, a radiomics nomogram was built with a multivariate logistic regression model. ResultsThe rad-score, consisting of 14 features from the gastroesophageal region and 5 from the splenic hilum region, was effective for VNT classification. The diagnostic performance was further improved by combining the rad-score with platelet counts, achieving an AUC of 0.987(95% CI, 0.969-1.00), 0.973(95% CI, 0.939-1.00) and 0.947(95% CI, 0.876-1.00) in the training set, internal validation set and external validation set respectively. In efficacy and safety assessment, the radiomics nomogram could spare more than 40% of endoscopic examinations with a low risk of missing VNT (
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- 2021
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27. Synthesis, evaluation and in silico studies of novel BRD4 bromodomain inhibitors bearing a benzo[d]isoxazol scaffold
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Yan Li, Yonggang Ma, Lizhong Wang, Maofeng Zhang, and Zhuyun Liu
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chemistry.chemical_classification ,BRD4 ,Thermal shift assay ,biology ,010405 organic chemistry ,Stereochemistry ,In silico ,Active site ,Peptide ,General Chemistry ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Bromodomain ,chemistry ,Docking (molecular) ,biology.protein ,IC50 - Abstract
The BRD4 protein is associated with various diseases, which has been an attractive target for the treatment of cancer and inflammation. This paper is a follow-up to our previous studies, in which we report the structure-based design, synthesis, and evaluation of a new class of small-molecule BRD4 bromodomain inhibitors bearing a benzo[d]isoxazol scaffold. The SARs focused on exploration of the 2′ or 3′ position to afford novel inhibitors that may avoid potential metabolically unstable site. The most potent inhibitor 13f exhibited high binding affinity to BRD4(1) with a ΔTm value of 7.8 °C as evaluated in thermal shift assay (TSA). The potent activity was also demonstrated by a peptide competition assay with an IC50 value of 0.21 μM. The docking studies revealed the binding mode of the compounds with the active site of BRD4(1). In addition, in silico predictions indicated that these compounds possessed good drug-likeness and pharmacokinetic profile. This paper is a follow-up to our previous studies, in which we report the structure-based design, synthesis, and evaluation of a new class of small-molecule BRD4 bromodomain inhibitors bearing a benzo[d]isoxazol scaffold.
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- 2021
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28. Process development and scale-up optimization of the SARS-CoV-2 receptor binding domain-based vaccine candidate, RBD219-N1C1
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Jungsoon Lee, Rakhi Tyagi Kundu, Joanne Altieri Rivera, Bin Zhan, Wen-Hsiang Chen, Peter J. Hotez, Zhuyun Liu, Junfei Wei, Maria Elena Bottazzi, Rakesh Adhikari, Portia M. Gillespie, and Ulrich Strych
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COVID-19 Vaccines ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Spike protein ,Applied Microbiology and Biotechnology ,Pichia pastoris ,law.invention ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Antigen ,law ,Animals ,Humans ,030212 general & internal medicine ,Neutralizing antibody ,Purification ,030304 developmental biology ,0303 health sciences ,biology ,Chemistry ,SARS-CoV-2 ,COVID-19 ,Reproducibility of Results ,General Medicine ,biology.organism_classification ,Yeast ,Biotechnological Products and Process Engineering ,Biochemistry ,Yield (chemistry) ,SCALE-UP ,Saccharomycetales ,Spike Glycoprotein, Coronavirus ,Fermentation ,biology.protein ,Recombinant DNA ,Biotechnology - Abstract
Abstract A SARS-CoV-2 RBD219-N1C1 (RBD219-N1C1) recombinant protein antigen formulated on Alhydrogel® has recently been shown to elicit a robust neutralizing antibody response against SARS-CoV-2 pseudovirus in mice. The antigen has been produced under current good manufacturing practices (cGMPs) and is now in clinical testing. Here, we report on process development and scale-up optimization for upstream fermentation and downstream purification of the antigen. This includes production at the 1-L and 5-L scales in the yeast, Pichia pastoris, and the comparison of three different chromatographic purification methods. This culminated in the selection of a process to produce RBD219-N1C1 with a yield of >400 mg per liter of fermentation with >92% purity and >39% target product recovery after purification. In addition, we show the results from analytical studies, including SEC-HPLC, DLS, and an ACE2 receptor binding assay that were performed to characterize the purified proteins to select the best purification process. Finally, we propose an optimized upstream fermentation and downstream purification process that generates quality RBD219-N1C1 protein antigen and is fully scalable at a low cost. Key points • Yeast fermentation conditions for a recombinant COVID-19 vaccine were determined. • Three purification protocols for a COVID-19 vaccine antigen were compared. • Reproducibility of a scalable, low-cost process for a COVID-19 vaccine was shown. Graphical abstract
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- 2021
29. Phenotypic plasticity of ER+ breast cancer in the bone microenvironment
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Poonam Sarkar, Luge Li, Hin Ching Lo, Haichao Wang, Ying Wooi Wan, Ik Sun Kim, Xiang Zhang, Zbigniew Gugala, Jingjing Liu, Rachel Schiff, Igor Bado, Amit Goldstein, Zhichun Xu, Shixia H, Matthew J. Ellis, Purba Singh, Zhuyun Liu, Wan-Jung Wu, Wen Zhang, Mahnaz Janghorban, Hyun-Hwan Jeong, Jingyuan Hu, Swarnima Singh, Muscallera A, and Waleed Gm
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Phenotypic plasticity ,Breast cancer ,Cancer cell ,EZH2 ,medicine ,Cancer research ,Endocrine system ,Biology ,medicine.disease ,Reprogramming ,Metastasis ,Epigenomics - Abstract
SummaryER+ breast cancer exhibits a strong bone-tropism in metastasis. How the bone microenvironment impacts the ER signaling and endocrine therapies remains poorly understood. Here, we discover that the osteogenic niche transiently reduces ER expression and activities specifically in bone micrometastases (BMMs), leading to endocrine resistance. This is mediated by gap junctions and paracrine FGF/PDGF signaling, which together generate a stable “memory”: cancer cells extracted from bone remain resistant to endocrine therapies for several generations. Using single cell-derived populations (SCPs), we demonstrated that this process is independent of clonal selection, and represents an EZH2-mediated epigenomic reprogramming. EZH2 drives ER+ BMMs toward a basal and stem-like state. EZH2 inhibition reverses endocrine resistance. Our data demonstrates how epigenomic adaptation to the bone microenvironment drives phenotypic plasticity of metastatic seeds and alters their therapeutic responses together with clonal selection, and provides insights into the clinical enigma of ER+ metastatic recurrences despite endocrine therapies.
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- 2020
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30. Genetic Modification to Design a Stable Yeast-expressed Recombinant SARS-CoV-2 Receptor Binding Domain as a COVID-19 Vaccine Candidate
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Brian Keegan, Jungsoon Lee, Bin Zhan, Maria Jose Villar, Rakhi Tyagi Kundu, Cristina Poveda, Joanne Altieri Rivera, Jeroen Pollet, Leroy Versteeg, Maria Elena Bottazzi, Ana Carolina de Araujo Leao, Zhuyun Liu, Ulrich Strych, Junfei Wei, Wen-Hsiang Chen, Peter J. Hotez, Portia M. Gillespie, and Rakesh Adhikari
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chemistry.chemical_classification ,Genetics ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Wild type ,Biology ,Protein tertiary structure ,Yeast ,law.invention ,Enzyme ,chemistry ,law ,Recombinant DNA ,Receptor ,Function (biology) - Abstract
BackgroundCoronavirus disease 2019 (COVID-19) caused by SARS-CoV-2 has now spread worldwide to infect over 110 million people, with approximately 2.5 million reported deaths. A safe and effective vaccine remains urgently needed.MethodWe constructed three variants of the recombinant receptor-binding domain (RBD) of the SARS-CoV-2 spike (S) protein (residues 331-549) in yeast as follows: (1) a “wild type” RBD (RBD219-WT), (2) a deglycosylated form (RBD219-N1) by deleting the first N-glycosylation site, and (3) a combined deglycosylated and cysteine-mutagenized form (C538A-mutated variant (RBD219-N1C1)). We compared the expression yields, biophysical characteristics, and functionality of the proteins produced from these constructs.Results and conclusionsThese three recombinant RBDs showed similar secondary and tertiary structure thermal stability and had the same affinity to their receptor, angiotensin-converting enzyme 2 (ACE-2), suggesting that the selected deletion or mutations did not cause any significant structural changes or alteration of function. However, RBD219-N1C1 had a higher fermentation yield, was easier to purify, was not hyperglycosylated, and had a lower tendency to form oligomers, and thus was selected for further vaccine development and evaluation.General significanceBy genetic modification, we were able to design a better-controlled and more stable vaccine candidate, which is an essential and important criterion for any process and manufacturing of biologics or drugs for human use.
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- 2020
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31. Modulating glial genes involved in synaptic function mitigates pathogenesis and behavioral deficits in aDrosophilamodel of Huntington’s Disease
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Andrew Laitman, Hyemin Kim, Megan Mair, Zhuyun Liu, Jinglin Wang, Tarik Seref Onur, Huilan Wang, Ryan Keyho, de Haro M, He Zhao, Ying Wooi Wan, Juan Botas, Ismael Al-Ramahi, Boxun Lu, Genevera I. Allen, and Alma M. Perez
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Gene knockdown ,Huntingtin ,Synapse assembly ,Excitotoxicity ,Biology ,medicine.disease ,medicine.disease_cause ,Phenotype ,Pathogenesis ,nervous system ,Huntington's disease ,Downregulation and upregulation ,medicine ,Neuroscience - Abstract
Most research on neurodegenerative diseases has focused on neurons, yet glia help form and maintain the synapses whose loss is so prominent in these conditions. To investigate the contributions of glia to Huntington’s disease (HD), we studied transcriptomic changes in HD human, HD mice, andDrosophilaexpressing human mutantHuntingtin(mHTT) in either glia, neurons or both. A large portion of conserved genes are concordantly dysregulated across the three species; we tested these genes in a high-throughput behavioral assay and found that downregulation of genes involved in synapse assembly mitigated pathogenesis and behavioral deficits. To our surprise, mitigating glial pathogenesis by dNRXN3knockdown was sufficient to improve the phenotype of flies expressing mHTTin neurons, suggesting that mHTT’s toxic effects in glia ramify throughout the brain. This supports a model in which dampening synaptic function is protective because it attenuates the excitotoxicity that characterizes HD.
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- 2020
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32. A scalable and reproducible manufacturing process for Phlebotomus papatasi salivary protein PpSP15, a vaccine candidate for leishmaniasis
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Wen-Hsiang Chen, Surafel Damena, Mun Peak Nyon, Peter J. Hotez, Zhuyun Liu, Amadeo B. Biter, Bin Zhan, Maria Elena Bottazzi, Rakhi Tyagi Kundu, and Ulrich Strych
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0106 biological sciences ,Genetic Vectors ,Gene Expression ,Leishmaniasis, Cutaneous ,01 natural sciences ,law.invention ,Pichia pastoris ,03 medical and health sciences ,Cutaneous leishmaniasis ,law ,Immunity ,010608 biotechnology ,medicine ,Animals ,Humans ,Cloning, Molecular ,Salivary Proteins and Peptides ,Leishmaniasis Vaccines ,030304 developmental biology ,Leishmania ,0303 health sciences ,biology ,Protein Stability ,Leishmaniasis ,biology.organism_classification ,medicine.disease ,Virology ,Recombinant Proteins ,Sandfly ,Molecular Weight ,Phlebotomus ,Fermentation ,Saccharomycetales ,Recombinant DNA ,Insect Proteins ,Female ,Cell bank ,Biotechnology - Abstract
Cutaneous leishmaniasis is a parasitic and neglected tropical disease transmitted by the bites of sandflies. The emergence of cutaneous leishmaniasis in areas of war, conflict, political instability, and climate change has prompted efforts to develop a preventive vaccine. One vaccine candidate antigen is PpSP15, a 15 kDa salivary antigen from the sandfly Phlebotomus papatasi that facilitates the infection of the Leishmania parasite and has been shown to induce parasite-specific cell-mediated immunity. Previously, we developed a fermentation process for producing recombinant PpSP15 in Pichia pastoris and a two-chromatographic-step purification process at 100 mL scale. Here we expand the process design to the 10 L scale and examine its reproducibility by performing three identical process runs, an essential transition step towards technology transfer for pilot manufacture. The process was able to reproducibly recover 81% of PpSP15 recombinant protein with a yield of 0.75 g/L of fermentation supernatant, a purity level of 97% and with low variance among runs. Additionally, a freeze-thaw stability study indicated that the PpSP15 recombinant protein remains stable after undergoing three freeze-thaw cycles, and an accelerated stability study confirmed its stability at 37 °C for at least one month. A research cell bank for the expression of PpSP15 was generated and fully characterized. Collectively, the cell bank and the production process are ready for technology transfer for future cGMP pilot manufacturing.
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- 2020
33. Yeast-expressed recombinant SARS-CoV-2 receptor binding domain RBD203-N1 as a COVID-19 protein vaccine candidate
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Ulrich Strych, Portia M. Gillespie, Maria Jose Villar, Leroy Versteeg, Jason T. Kimata, Jeroen Pollet, Jungsoon Lee, Zhuyun Liu, Yi-Lin Chen, Peter J. Hotez, Bin Zhan, Maria Elena Bottazzi, Rakesh Adhikari, Wen-Hsiang Chen, Cristina Poveda, Rakhi Tyagi Kundu, Aaron O. Bailey, Brian Keegan, and Junfei Wei
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Biophysical characterization ,COVID-19 Vaccines ,Protein subunit ,Gene Expression ,Saccharomyces cerevisiae ,Subunit vaccine ,Article ,Pichia pastoris ,law.invention ,Mice ,Neutralization ,Protein Domains ,Antigen ,law ,Animals ,Humans ,Expression vector ,biology ,SARS-CoV-2 ,Chemistry ,Immunogenicity ,biology.organism_classification ,Recombinant Proteins ,Yeast ,Coronavirus ,Biochemistry ,Spike Glycoprotein, Coronavirus ,biology.protein ,Recombinant DNA ,Fermentation ,P. pastoris ,Antibody ,Biotechnology - Abstract
BackgroundSARS-CoV-2 protein subunit vaccines are being evaluated by multiple manufacturers to fill the need for low-cost, easy to scale, safe, and effective COVID-19 vaccines for global access. Vaccine candidates relying on the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein have been the focus of our development program. In this paper, we report on the generation of the RBD203-N1 yeast expression construct, which produces a recombinant protein that when formulated with alum and the TLR-9 agonist, CpG1826 elicits a robust immune response and protection in mice.MethodThe RBD203-N1 antigen was expressed in the yeast Pichia pastoris X33. After fermentation at the 5 L scale, the protein was purified by hydrophobic interaction chromatography followed by anion exchange chromatography. The purified protein was characterized biophysically and biochemically, and after its formulation, the immunogenicity and efficacy were evaluated in mice.Results, Conclusions, and SignificanceThe RBD203-N1 production process yielded 492.9 ± 3.0 mg/L of protein in the fermentation supernatant. A two-step purification process produced a >96% pure protein with a recovery rate of 55 ± 3% (total yield of purified protein: 270.5 ± 13.2 mg/L fermentation supernatant). The protein was characterized as a homogeneous monomer with well-defined secondary structure, thermally stable, antigenic, and when adjuvanted on alum and CpG, it was immunogenic and induced robust levels of neutralizing antibodies against SARS-CoV-2 pseudovirus. These characteristics show that this vaccine candidate is well suited for technology transfer with feasibility of its transition into the clinic to evaluate its immunogenicity and safety in humans.
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- 2022
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34. The parasite-derived rOv-ASP-1 is an effective antigen-sparing CD4 + T cell-dependent adjuvant for the trivalent inactivated influenza vaccine, and functions in the absence of MyD88 pathway
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Sara Lustigman, Zhuyun Liu, Bin Zhan, Parakkal Jovvian George, Joseph Koussa, Junfei Wei, Scott E. Hensley, Wanyan Deng, Sonia Jain, Maria Elena Bottazzi, Jie Lu, Kaela Parkhouse, Hao Shen, and Jiu Jiang
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0301 basic medicine ,Influenza vaccine ,medicine.medical_treatment ,T cell ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Antigen ,Medicine ,030212 general & internal medicine ,General Veterinary ,General Immunology and Microbiology ,biology ,business.industry ,Public Health, Environmental and Occupational Health ,Vaccination ,030104 developmental biology ,Infectious Diseases ,medicine.anatomical_structure ,Immunization ,Immunology ,biology.protein ,Molecular Medicine ,Antibody ,business ,Adjuvant - Abstract
Vaccination remains the most cost-effective biomedical approach for controlling influenza disease. In times of pandemics, however, these vaccines cannot be produced in sufficient quantities for worldwide use by the current manufacturing capacities and practices. What is needed is the development of adjuvanted vaccines capable of inducing an adequate or better immune response at a decreased antigen dose. Previously we showed that the protein adjuvant rOv-ASP-1 augments influenza-specific antibody titers and survival after virus challenge in both young adult and old-age mice when administered with the trivalent inactivated influenza vaccine (IIV3). In this study we show that a reduced amount of rOv-ASP-1, with 40-times less IIV3 can also induce protection. Apparently the potency of the rOv-ASP-1 adjuvanted IIV3 vaccine is independent of the IIV3-specific Th1/Th2 associated antibody responses, and independent of the presence of HAI antibodies. However, CD4+ T helper cells were indispensable for the protection. Further, rOv-ASP-1 with or without IIV3 elicited the increased level of various chemokines, which are known chemoattractant for immune cells, into the muscle 4 h after immunization, and significantly induced the recruitment of monocytes, macrophages and neutrophils into the muscles. The recruited monocytes had higher expression of the activation marker MHCII on their surface as well as CXCR3 and CCR2; receptors for IP-10 and MCP-1, respectively. These results show that the rOv-ASP-1 adjuvant allows substantial antigen sparing of IIV3 by stimulating at the site of injection the accumulation of chemokines and the recruitment of immune cells that can augment the activation of CD4+ T cell immune responses, essential for the production of antibody responses. Protection elicited by the rOv-ASP-1 adjuvanted IIV3 vaccine also appears to function in the absence of MyD88-signaling. Future studies will attempt to delineate the precise mechanisms by which the rOv-ASP-1 adjuvanted IIV3 vaccine works.
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- 2018
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35. Space-Time Hybrid Model for Short-Time Travel Speed Prediction
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Zhuyun Liu, Wei Wang, Xiaojian Hu, Fan Qi, and Hua Xuedong
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050210 logistics & transportation ,Article Subject ,Computer science ,lcsh:Mathematics ,Space time ,Periodic trends ,05 social sciences ,Real-time computing ,010501 environmental sciences ,lcsh:QA1-939 ,Sensor fusion ,Residual ,01 natural sciences ,Advanced Traffic Management System ,Modeling and Simulation ,0502 economics and business ,Upstream (networking) ,Autoregressive integrated moving average ,Intelligent transportation system ,0105 earth and related environmental sciences - Abstract
Short-time traffic speed forecasting is a significant issue for developing Intelligent Transportation Systems applications, and accurate speed forecasting results are necessary inputs for Intelligent Traffic Security Information System (ITSIS) and advanced traffic management systems (ATMS). This paper presents a hybrid model for travel speed based on temporal and spatial characteristics analysis and data fusion. This proposed methodology predicts speed by dividing the data into three parts: a periodic trend estimated by Fourier series, a residual part modeled by the ARIMA model, and the possible events affected by upstream or downstream traffic conditions. The aim of this study is to improve the accuracy of the prediction by modeling time and space variation of speed, and the forecast results could simultaneously reflect the periodic variation of traffic speed and emergencies. This information could provide decision-makers with a basis for developing traffic management measures. To achieve the research objective, one year of speed data was collected in Twin Cities Metro, Minnesota. The experimental results demonstrate that the proposed method can be used to explore the periodic characteristics of speed data and show abilities in increasing the accuracy of travel speed prediction.
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- 2018
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36. DNA binding protein CgIkaros-like regulates the proliferation of agranulocytes and granulocytes in oyster (Crassostrea gigas)
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Lingling Wang, Wending Sun, Zhuyun Liu, Linsheng Song, Miren Dong, Ying Song, and Xiaorui Song
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Oyster ,Hemocytes ,Immunology ,Notch signaling pathway ,Granulocyte ,Ikaros Transcription Factor ,biology.animal ,medicine ,Animals ,Tissue Distribution ,Amino Acid Sequence ,RNA, Messenger ,Crassostrea ,Transcription factor ,Phylogeny ,Cell Proliferation ,Messenger RNA ,Agranulocyte ,Receptors, Notch ,biology ,Cyclin-Dependent Kinase 2 ,Cell cycle ,Pacific oyster ,biology.organism_classification ,Hematopoiesis ,Cell biology ,DNA-Binding Proteins ,medicine.anatomical_structure ,Gene Expression Regulation ,Sequence Alignment ,Developmental Biology - Abstract
DNA-binding protein Ikaros is a major determinant of haematopoietic lineage, especially in the development, differentiation and proliferation of lymphocytes. In the present study, a Ikaros homologue (designed as CgIkaros-like) was identified and characterized as a vital determinant in the proliferation of haemocytes during haematopoiesis of Pacific oyster Crassostrea gigas. The complete coding sequence of CgIkaros-like was of 1329 bp encoding a predicted polypeptide of 442 amino acids with four ZnF regions, locating at the C-terminus and N-terminus respectively. The highest expression level of CgIkaros-like mRNA was found in gills, followed by haemocytes and gonad. The mRNA transcripts of CgIkaros-like could be detected in all the haemocytes with higher abundance in semi-granulocytes and agranulocytes. CgIkaros-like protein was localized in both of cytoplasm and nucleus with higher abundance in nucleus of oyster haemocytes. The mRNA and protein expression levels of agranulocyte marker CgCD9, granulocyte marker CgAATase, cell cycle related gene CgCDK2, Notch receptor CgNotch and Notch target gene CgHes1 all increased significantly (p < 0.05) after CgIkaros-like was interfered by siRNAs, which were about 27.33-, 2.63-, 24.34-, 4.45- and 6.08-fold of that in the siRNA-NC control group, respectively. While the transcripts of CgGATA3 and CgRunx did not change significantly after CgIkaros-like was interfered. These results demonstrated that CgIkaros-like functioned as a transcription factor combined with Notch pathway to mediate CgCDK2 and regulate the proliferation of oyster haemocytes.
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- 2021
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37. Expression, purification, immunogenicity and protective efficacy of a recombinant nucleoside hydrolase from Leishmania donovani, a vaccine candidate for preventing cutaneous leishmaniasis
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Vladimir Cruz-Chan, Maria Elena Bottazzi, Eric Dumonteil, Bin Zhan, Molly Hammond, Zhuyun Liu, Brian Keegan, Junfei Wei, Elissa M. Hudspeth, Raul Arjona-Sabido, C. Patrick McAtee, Christopher A. Seid, and Peter J. Hotez
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0301 basic medicine ,medicine.medical_treatment ,Protozoan Proteins ,Leishmania donovani ,Leishmaniasis, Cutaneous ,Leishmania mexicana ,Mice ,03 medical and health sciences ,Immunogenicity, Vaccine ,0302 clinical medicine ,Antigen ,Hydrolase ,medicine ,Animals ,Leishmaniasis Vaccines ,N-Glycosyl Hydrolases ,Polyacrylamide gel electrophoresis ,Mice, Inbred BALB C ,biology ,Immunogenicity ,Hydrolase Gene ,biology.organism_classification ,Molecular biology ,Recombinant Proteins ,030104 developmental biology ,030220 oncology & carcinogenesis ,Female ,Adjuvant ,Biotechnology - Abstract
The nucleoside hydrolase gene from Leishmania donovani was cloned and expressed in Escherichia coli as a full length 36-kDa protein (LdNH36). Following lysis and extraction, the protein was purified by anion exchange and gel filtration chromatography. The purified protein had a molecular mass of approximately 36-kDa and was confirmed to be >99% pure. Using a nucleoside hydrolase assay, the protein was found to exhibit a Km of 741 ± 246 μM. Protein integrity was confirmed by lithium dodecyl sulfate polyacrylamide gel electrophoresis (LDS-PAGE), mass spectrometry (MS), and enzymatic assay. Analysis of antibody levels from immunized mice indicated that LdNH36 alone or in a stable emulsion with the Toll-like receptor-4 ligand glucopyranosyl lipid adjuvant (GLA-SE) as immunostimulant induced high levels of antigen-specific IgG antibodies. The cellular immune response indicated a Th1 response in mice immunized with LdNH36, but only when formulated with GLA-SE. Mice immunized with the LdNH36 antigen in combination with the GLA-SE adjuvant and challenged with Leishmania mexicana showed significant reductions (>20 fold) in parasite burden, confirming the protective efficacy of this vaccine candidate.
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- 2017
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38. Identification, Characterization, and Structure of Tm16 fromTrichuris muris
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Peter J. Hotez, Maria Elena Bottazzi, Junfei Wei, Alan Kelleher, Shanii Tabb, Bin Zhan, Jeroen Pollet, Zhuyun Liu, and Oluwatoyin A. Asojo
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0301 basic medicine ,Article Subject ,biology ,Trichuriasis ,biology.organism_classification ,medicine.disease ,Onchocerca volvulus ,Virology ,Trichuris muris ,lcsh:Infectious and parasitic diseases ,Pichia pastoris ,law.invention ,03 medical and health sciences ,030104 developmental biology ,Infectious Diseases ,Antigen ,Immunization ,Polyclonal antibodies ,law ,medicine ,biology.protein ,Recombinant DNA ,lcsh:RC109-216 ,Parasitology ,Research Article - Abstract
Trichuriasis is a disease of poverty for which excretory and secretory (ES) products that induce the protective immunity are being investigated as candidate vaccines antigens. In this study, ES products ofT. murisand immune sera were produced. The immune sera recognized more than 20 proteins on a 2D-gel of ES products ofT. murisadult worms. Tm16 was one of the proteins identified by mass spectrometry. Tm16 shares 57% sequence identity with Ov16, an immunodominant diagnostic antigen fromOnchocerca volvulus. Recombinant Tm16 with a carboxyl terminal hexahistidine was produced usingPichia pastoris.Polyclonal antibodies against rTm16 were generated by one-prime and two-boost immunization of three female Balb/c mice with 25 μg of recombinant Tm16 emulsified with ISA720 adjuvant. These polyclonal antibodies confirmed that Tm16 is localized to the ES products and the soluble fraction of the adult worm. Additionally, the high-resolution crystal structure of Tm16 was solved by molecular replacement. Tm16 belongs to the phosphatidylethanolamine-binding-like protein (PEBP1) family and this is the first structure of a PEBP1 from a parasite.
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- 2017
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39. Andrographolide derivative ameliorates dextran sulfate sodium-induced experimental colitis in mice
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Ying Wang, Yitao Wang, Bao-Jian Guo, Yuqiang Wang, Lipeng Xu, Mei Jing, Decai Wang, Feng Li, Zhuyun Liu, Mo-Yu Ding, Zaijun Zhang, and Guo-Chun Zhou
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0301 basic medicine ,Male ,Andrographolide ,Anti-Inflammatory Agents ,Inflammation ,Pharmacology ,Biochemistry ,Proinflammatory cytokine ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Structure-Activity Relationship ,0302 clinical medicine ,Downregulation and upregulation ,medicine ,Animals ,Humans ,Colitis ,Receptor ,Acute colitis ,Molecular Structure ,Chemistry ,Dextran Sulfate ,NF-κB ,medicine.disease ,HCT116 Cells ,Mice, Inbred C57BL ,030104 developmental biology ,030220 oncology & carcinogenesis ,medicine.symptom ,Diterpenes - Abstract
The therapeutic efficacy of immunosuppressive agents has been intensively studied for colitis management. We synthesized a series of andrographolide derivatives and reported their structure-activity-relationship and anti-inflammatory activity in our previous studies. Among these derivatives, compound 3b exhibited the most potent immunosuppressive activity. In the present study, we assessed the efficacy of 3b in dextran sulfate sodium (DSS)-induced model of acute colitis. Compound 3b was administered intragastrically. The therapeutic effect of 3b was evaluated using disease score and immune cell infiltration. The effect of 3b on Toll-like receptor 4/NF-κB and β-catenin signaling was primarily determined by using immunohistochemistry staining and quantitative real-time PCR. The crosstalk between NF-κB and β-catenin signaling was then assessed in HCT-116 cells. Treatment with 3b significantly downregulated the disease activity index and suppressed the histologic evidence of inflammation in DSS-induced model of acute colitis. Compound 3b inhibited proinflammatory cytokine expression at both the serum and transcription levels. Treatment with 3b also upregulated the number of PCNA-positive and goblet cells in the intestinal crypt and the intestinal expression of mRNA levels of β-catenin target genes. β-Catenin level regulation affected the antiinflammation and anti-apoptotic activities of 3b. This study demonstrated that 3b, a novel andrographolide derivative, suppressed inflammation and significantly reversed colitis pathology. The outcome of colitis treatment with an immunosuppressive agent depends upon the intestinal expression and mutation status of β-catenin.
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- 2019
40. Genetic modification to design a stable yeast-expressed recombinant SARS-CoV-2 receptor binding domain as a COVID-19 vaccine candidate
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Leroy Versteeg, Bin Zhan, Brian Keegan, Jungsoon Lee, Rakesh Adhikari, Wen-Hsiang Chen, Maria Elena Bottazzi, Joanne Altieri Rivera, Zhuyun Liu, Jeroen Pollet, Rakhi Tyagi Kundu, Maria Jose Villar, Portia M. Gillespie, Junfei Wei, Ulrich Strych, Peter J. Hotez, Cristina Poveda, and Ana Carolina de Araujo Leao
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Biophysical characterization ,0301 basic medicine ,CoV, coronavirus ,Gene Expression ,medicine.disease_cause ,Biochemistry ,law.invention ,0302 clinical medicine ,law ,%CV, coefficient of variation ,030212 general & internal medicine ,Cloning, Molecular ,CV, column volume ,CD, circular dichroism ,Peptide sequence ,Coronavirus ,DLS, dynamic light scattering ,Genetics ,COVID-19, Coronavirus disease 2019 ,RBD, receptor-binding domain ,FS, fermentation supernatant ,Recombinant Proteins ,h, hour ,Spike Glycoprotein, Coronavirus ,Recombinant DNA ,Biotechnology ,ACE-2, angiotensin-converting enzyme 2 ,S, spike ,COVID-19 Vaccines ,Protein domain ,Biophysics ,Biology ,Article ,03 medical and health sciences ,Protein Domains ,medicine ,SARS, severe acute respiratory syndrome ,Amino Acid Sequence ,DO, dissolved oxygen ,Molecular Biology ,SARS-CoV-2 ,Wild type ,Yeast ,Protein tertiary structure ,Protein Structure, Tertiary ,030104 developmental biology ,Saccharomycetales ,P. pastoris ,Function (biology) - Abstract
Background Coronavirus disease 2019 (COVID-19) caused by SARS-CoV-2 has now spread worldwide to infect over 110 million people, with approximately 2.5 million reported deaths. A safe and effective vaccine remains urgently needed. Method We constructed three variants of the recombinant receptor-binding domain (RBD) of the SARS-CoV-2 spike (S) protein (residues 331–549) in yeast as follows: (1) a “wild type” RBD (RBD219-WT), (2) a deglycosylated form (RBD219-N1) by deleting the first N-glycosylation site, and (3) a combined deglycosylated and cysteine-mutagenized form (C538A-mutated variant (RBD219-N1C1)). We compared the expression yields, biophysical characteristics, and functionality of the proteins produced from these constructs. Results and conclusions These three recombinant RBDs showed similar secondary and tertiary structure thermal stability and had the same affinity to their receptor, angiotensin-converting enzyme 2 (ACE-2), suggesting that the selected deletion or mutations did not cause any significant structural changes or alteration of function. However, RBD219-N1C1 had a higher fermentation yield, was easier to purify, was not hyperglycosylated, and had a lower tendency to form oligomers, and thus was selected for further vaccine development and evaluation. General significance By genetic modification, we were able to design a better-controlled and more stable vaccine candidate, which is an essential and important criterion for any process and manufacturing of biologics or drugs for human use.
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- 2021
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41. Expression and purification of an engineered, yeast-expressedLeishmania donovaninucleoside hydrolase with immunogenic properties
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Molly Hammond, Elissa M. Hudspeth, David A. Engler, Risë K. Matsunami, Bin Zhan, Maria Elena Bottazzi, Christopher A. Seid, Ulrich Strych, Zhuyun Liu, Qian Wang, Peter J. Hotez, Oluwatoyin A. Asojo, Junfei Wei, C. Patrick McAtee, Michael J. Heffernan, and Jeroen Pollet
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Models, Molecular ,0301 basic medicine ,Glycosylation ,030231 tropical medicine ,Immunology ,Leishmania donovani ,Antibodies, Protozoan ,Gene Expression ,Antigens, Protozoan ,Biology ,Pichia ,Pichia pastoris ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,law ,Hydrolase ,Animals ,Immunology and Allergy ,N-Glycosyl Hydrolases ,Pharmacology ,chemistry.chemical_classification ,Mice, Inbred BALB C ,biology.organism_classification ,Research Papers ,Molecular biology ,Dynamic Light Scattering ,Recombinant Proteins ,Amino acid ,Molecular Weight ,030104 developmental biology ,chemistry ,Biochemistry ,Immunoglobulin G ,Chromatography, Gel ,Recombinant DNA ,Female ,Mutant Proteins ,Protein Multimerization ,Nucleoside - Abstract
Leishmania donovani is the major cause of visceral leishmaniasis (kala-azar), now recognized as the parasitic disease with the highest level of mortality second only to malaria. No human vaccine is currently available. A 36 kDa L. donovani nucleoside hydrolase (LdNH36) surface protein has been previously identified as a potential vaccine candidate antigen. Here we present data on the expression of LdNH36 in Pichia pastoris and its purification at the 20 L scale to establish suitability for future pilot scale manufacturing. To improve efficiency of process development and ensure reproducibility, 4 N-linked glycosylation sites shown to contribute to heterogeneous high-mannose glycosylation were mutated to glutamine residues. The mutant LdNH36 (LdNH36-dg2) was expressed and purified to homogeneity. Size exclusion chromatography and light scattering demonstrated that LdNH36-dg2 existed as a tetramer in solution, similar to the wild-type recombinant L. major nucleoside hydrolase. The amino acid mutations do not affect the tetrameric interface as confirmed by theoretical modeling, and the mutated amino acids are located outside the major immunogenic domain. Immunogenic properties of the LdNH36-dg2 recombinant protein were evaluated in BALB/c mice using formulations that included a synthetic CpG oligodeoxynucleotide, together with a microparticle delivery platform (poly(lactic-co-glycolic acid)). Mice exhibited high levels of IgG1, IgG2a, and IgG2b antibodies that were reactive to both LdNH36-dg2 and LdNH36 wild-type. While the point mutations did affect the hydrolase activity of the enzyme, the IgG antibodies elicited by LdNH36-dg2 were shown to inhibit the hydrolase activity of the wild-type LdNH36. The results indicate that LdNH36-dg2 as expressed in and purified from P. pastoris is suitable for further scale-up, manufacturing, and testing in support of future first-in-humans phase 1 clinical trials.
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- 2016
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42. Differential in vitro and in vivo anti-angiogenic activities of acetal and ketal andrographolide derivatives in HUVEC and zebrafish models
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Yuran Peng, Decai Wang, Shang Li, Jingjing Li, Zhuyun Liu, Guo-Chun Zhou, Simon Ming-Yuen Lee, Kun Wang, Dekuan Sheng, and Yicheng Sun
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0301 basic medicine ,biology ,Angiogenesis ,General Chemical Engineering ,Andrographolide ,Acetal ,General Chemistry ,Pharmacology ,biology.organism_classification ,In vitro ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Biochemistry ,In vivo ,Phosphorylation ,Signal transduction ,Zebrafish - Abstract
A series of acetal and ketal derivatives of andrographolide were synthesized and their anti-angiogenic activities were tested in vitro and in vivo using HUVEC and zebrafish models, respectively. These compounds exhibited better angiogenesis inhibitory activity in both models than the parent compound andrographolide (1). The compounds’ SARs differed for the HUVEC and zebrafish models, in that 14α-ketal 2 showed the best activity for in vivo anti-angiogenesis in zebrafish while 14α-acetals 4, 5 and 6 had greater in vitro anti-angiogenic activity with HUVECs than the other compounds and 1. The results suggested that methylene acetals 4, 5 and 6 were possibly hydrolyzed into 3 or 1 in zebrafish and that 14α-ketal 2 probably did not fully act as a pro-drug of 3 or 1 in zebrafish, instead exerting the anti-angiogenic effect itself or being metabolized into an unknown more active form(s) than 3 and 1 to block in vivo angiogenesis in zebrafish. The underlying molecular mechanisms of compound 2’s action were explored and the results indicated that VEGF-stimulated angiogenesis was significantly inhibited by compound 2 via targeting the phosphorylation of VEGFR2 and VEGFR2-mediated downstream angiogenesis signaling pathways. Therefore, this report demonstrates that andrographolide derivative(s) can be developed into therapeutic agent(s) against excessive angiogenesis, including tumor angiogenesis, after further improvement of the potency and stability of this series of andrographolide derivatives.
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- 2016
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43. Protective immunity elicited by the nematode-conserved As37 recombinant protein against Ascaris suum infection
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Ricardo Toshio Fujiwara, Kathryn M. Jones, Maria Elena Bottazzi, Zhuyun Liu, Bin Zhan, Oluwatoyin A. Asojo, Brian Keegan, Leroy Versteeg, Junfei Wei, Peter J. Hotez, and Ulrich Strych
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0301 basic medicine ,Life Cycles ,Physiology ,medicine.medical_treatment ,RC955-962 ,Biochemistry ,Trichuris muris ,Immunologic Adjuvants ,Mice ,Soil ,Larvae ,0302 clinical medicine ,Immune Physiology ,Arctic medicine. Tropical medicine ,Medicine and Health Sciences ,Public and Occupational Health ,Nematode Infections ,Ascaris suum ,Phylogeny ,Vaccines ,Ascariasis ,Mice, Inbred BALB C ,Immune System Proteins ,Immunogenicity ,Animal Models ,Helminth Proteins ,Vaccination and Immunization ,Recombinant Proteins ,Infectious Diseases ,Experimental Organism Systems ,Helminth Infections ,Female ,Public aspects of medicine ,RA1-1270 ,Ascaris lumbricoides ,Adjuvant ,Research Article ,Infectious Disease Control ,Immunology ,030231 tropical medicine ,Antibodies, Helminth ,Mouse Models ,Biology ,Research and Analysis Methods ,Antibodies ,Necator americanus ,Microbiology ,03 medical and health sciences ,Model Organisms ,Antigen ,parasitic diseases ,Parasitic Diseases ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Ancylostoma ceylanicum ,Public Health, Environmental and Occupational Health ,Biology and Life Sciences ,Proteins ,biology.organism_classification ,030104 developmental biology ,Antigens, Helminth ,Animal Studies ,Preventive Medicine ,Developmental Biology - Abstract
Background Ascaris lumbricoides is one of the three major soil-transmitted gastrointestinal helminths (STHs) that infect more than 440 million people in the world, ranking this neglected tropical disease among the most common afflictions of people living in poverty. Children infected with this roundworm suffer from malnutrition, growth stunting as well as cognitive and intellectual deficits. An effective vaccine is urgently needed to complement anthelmintic deworming as a better approach to control helminth infections. As37 is an immunodominant antigen of Ascaris suum, a pig roundworm closely related to the human A. lumbricoides parasite, recognized by protective immune sera from A. suum infected mice. In this study, the immunogenicity and vaccine efficacy of recombinant As37 were evaluated in a mouse model. Methodology/Principal findings As37 was cloned and expressed as a soluble recombinant protein (rAs37) in Escherichia coli. The expressed rAs37 was highly recognized by protective immune sera from A. suum egg-infected mice. Balb/c mice immunized with 25 μg rAs37 formulated with AddaVax™ adjuvant showed significant larval worm reduction after challenge with A. suum infective eggs when compared with a PBS (49.7%) or adjuvant control (48.7%). Protection was associated with mixed Th1/2-type immune responses characterized by high titers of serological IgG1 and IgG2a and stimulation of the production of cytokines IL-4, IL-5, IL-10 and IL-13. In this experiment, the AddaVax™ adjuvant induced better protection than the Th1-type adjuvant MPLA (38.9%) and the Th2-type adjuvant Alhydrogel (40.7%). Sequence analysis revealed that As37 is a member of the immunoglobulin superfamily (IgSF) and highly conserved in other human STHs. Anti-As37 antibodies strongly recognized homologs in hookworms (Necator americanus, Ancylostoma ceylanicum, A. caninum) and in the whipworm Trichuris muris, but there was no cross-reaction with human spleen tissue extracts. These results suggest that the nematode-conserved As37 could serve as a pan-helminth vaccine antigen to prevent all STH infections without cross-reaction with human IgSF molecules. Conclusions/Significance As37 is an A. suum expressed immunodominant antigen that elicited significant protective immunity in mice when formulated with AddaVax™. As37 is highly conserved in other STHs, but not in humans, suggesting it could be further developed as a pan-helminth vaccine against STH co-infections., Author summary Ascaris infection is the most common infection of humans living in poverty worldwide and can result in malnutrition and stunted physical and mental development in children. A preventive vaccine is urgently needed as a complementary approach to anthelmintic deworming to increase the efficiency of STH infection control. To develop a vaccine against Ascaris infection, an immunodominant antigen, As37 of A. suum, was cloned and expressed as a soluble recombinant protein in E. coli. The recombinant As37 protein (rAs37) was highly recognized by protective immune sera from A. suum infected mice. Balb/c mice immunized with 25 μg rAs37 formulated with the adjuvant AddaVax™ showed significant larval worm reduction against challenge with A. suum infective eggs when compared to a PBS (49.7%) or adjuvant control (48.7%). Protection was associated with a mixed Th1/2-type immune response characterized by high titers of serological IgG1 and IgG2a and stimulation of the production of cytokines IL-4, IL-5, IL-10 and IL-13. The AddaVax™ adjuvant induced better protection than the Th1-type adjuvant MPLA (38.9%) and the Th2-type adjuvant Alhydrogel (40.7%). Sequence analysis revealed that As37 was a member of the immunoglobulin superfamily (IgSF) and highly conserved in other human STHs. Anti-As37 antibodies strongly recognized homologs in hookworms (Necator americanus, A. ceylanicum, A. caninum) and in the whipworm T. muris, but there was no cross-reaction with human spleen tissue extracts. These results indicate that the nematode-conserved As37 protein could be developed as a pan-helminth vaccine antigen to prevent all STH infections without reacting with human IgSF molecules.
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- 2020
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44. Discovery and preliminary SAR of 14-aryloxy-andrographolide derivatives as antibacterial agents with immunosuppressant activity
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Zhuyun Liu, Yitao Wang, Xiao-Min Li, Feng Li, Xin Nie, Decai Wang, Ying Wang, Dekuan Sheng, Shao-Ru Chen, Guo-Chun Zhou, and Qi Zhao
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0301 basic medicine ,biology ,medicine.drug_class ,General Chemical Engineering ,Andrographolide ,Antibiotics ,General Chemistry ,Pharmacology ,biology.organism_classification ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Immune system ,chemistry ,medicine ,TLR4 ,Pharmacophore ,Signal transduction ,Antibacterial activity ,Andrographis paniculata - Abstract
Antibacterials (which restore gut flora balance) and immunosuppressants (which correct immune defects) are two important and effective therapeutic agents for the treatment of inflammatory bowel disease (IBD) in clinical use today. Since the structural skeleton of andrographolide, isolated from Andrographis paniculata, has become known as a natural antibiotic with anti-inflammation and heat-clearing and detoxifying properties, 14-aryloxy andrographolide derivatives have been designed, synthesized, and tested for their antibacterial effects on E. coli, S. aureus, and E. faecalis, which are related to IBD. It has been discovered in this study that the andrographolide skeleton is more selective against E. faecalis, the 14-aryloxy group with basicity is important for antibacterial functions, and the 14-(8′-quinolinyloxy) group is a good pharmacophore with antibacterial activity. In addition, we found that 7b1 and 8b1 are good and selective inhibitors of E. faecalis; two 14β-(8′-quinolinyloxy) andrographolide derivatives, 6b17 and 9b, exhibit good activity against E. coli, S. aureus, and E. faecalis. Likewise and importantly, further exploration of immunosuppressant activity for IBD shows that compound 7b1 is a selective inhibitor of the TNF-α/NF-κB signaling pathway, whereas 8b1 is selectively active against the TLR4/NF-κB signaling pathway; moreover, the compounds 6b17 and 9b are active in inhibiting the IL-6/STAT3, TLR4/NF-κB, and TNF-α/NF-κB signaling pathways. Based on these results, we have further focused on the development of dual function inhibitors of IBD as antibacterial and immunosuppressant agents by structural modification of andrographolide.
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- 2018
45. Identification of immunodominant antigens for the laboratory diagnosis of toxocariasis
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Zhuyun Liu, Ricardo Toshio Fujiwara, Stefan M. Geiger, Maria Elena Bottazzi, Peter J. Hotez, Patricia P. Wilkins, Junfei Wei, Marco Túlio Porto Gonçalves, Ravi K. Ajmera, Pedro Henrique Gazzinelli-Guimarães, and Bin Zhan
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DNA, Complementary ,Blotting, Western ,Antibodies, Helminth ,Helminthiasis ,Dot blot ,Enzyme-Linked Immunosorbent Assay ,Western blot test ,Lectins ,Toxocara infection ,Escherichia coli ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Serum pool ,Toxocariasis ,biology ,Clinical Laboratory Techniques ,Immunodominant Epitopes ,Public Health, Environmental and Occupational Health ,Toxocara canis ,Immunodominant Antigens ,biology.organism_classification ,medicine.disease ,Molecular biology ,Recombinant Proteins ,Mice, Inbred C57BL ,Infectious Diseases ,Canis ,Antigens, Helminth ,Larva ,Immunology ,Parasitology - Abstract
Objectives To identify immunodominant antigens of Toxocara canis recognised by Toxocara-infected sera as recombinant reagents for immunodiagnosis of toxocariasis. Methods Pooled sera from human cases of toxocariasis were used to identify immunodominant antigens by immunoscreening a T. canis larval expression cDNA library. The positive clones were sequenced to reveal the identity of the antigens. The recombinant proteins were expressed in E. coli and then used to confirm their immunoreaction with sera of humans with toxocariasis. Two chosen antigens were also used to differentiate Toxocara infection from other helminth infections in mice. Results Eleven antigens with immunodiagnostic potential were identified, including two C-type lectins (CTLs) that reacted strongly with the Toxocara-positive serum pool. The first CTL (Tc-CTL-1) is the same as TES-32, previously identified as a major immunodominant component of TES; the second CTL (Tc-CTL-2) is a novel C-type lectin sharing 83% amino acid sequence identity within the functional domain of Tc-CTL-1. The E. coli-expressed recombinant Tc-CTL-1 was strongly recognised by the Toxocara-positive serum pool or sera from animals experimentally infected with T. canis. Reactivity with recombinant Tc-CTL-1 was higher when the unreduced protein was used in an enzyme-linked immunosorbent assay (ELISA), dot-blot assay or Western blot test compared to the protein under reduced condition. Both recombinant Tc-CTL-1- and Tc-CTL-2-based ELISAs were able to differentiate T. canis infection from other helminth infections in experimentally infected mice. Conclusions Both Tc-CTL-1 and Tc-CTL-2 were able to differentiate Toxocara infection from other helminth infections and could potentially be used as sensitive and specific immunodiagnostic antigens. Objectifs Identifier des antigenes immunodominants de Toxocara canis reconnus par des serums infectes par Toxocara, comme recombinants reactifs pour le diagnostic immunologique de la toxocarose. Methodes Des serums pooles provenant de cas humains de toxocarose ont ete utilises pour identifier des antigenes immunodominants par immunocriblage d'une banque d'expression d’ADNc de larves de T. canis. Les clones positifs ont ete sequences pour reveler l'identite des antigenes. Les proteines recombinantes ont ete exprimees dans E. coli et ensuite utilisees pour confirmer leur reaction immunologique avec des serums humains de toxocarose. Deux antigenes ont egalement ete utilises pour differencier la toxocarose d'autres helminthiases chez la souris. Resultats 11 antigenes a potentiel d'immunodiagnostic ont ete identifies, dont deux lectines de type C (CTL) qui ont reagi fortement avec le pool de serums positifs pour Toxocara. La premiere CTL (Tc-CTL-1) est la meme que TES-32, precedemment identifiee comme une composante immunodominante majeure de TES; la deuxieme CTL (Tc-CTL-2) est une nouvelle lectine de type C partageant une identite de 83% avec la sequence d'acides amines dans la region fonctionnelle de Tc-CTL-1. Le recombinant Tc-CTL-1 exprime dans E. coli a ete fortement reconnu par le pool de serums positifs pour Toxocara ou des serums provenant d'animaux infectes experimentalement avec T. canis. La reactivite avec le recombinant Tc-CTL-1 etait plus forte lorsque la proteine non reduite a ete utilisee dans des essais ELISA, Dot-blot ou Western-blot par rapport a la proteine sous sa forme reduite. Les ELISA bases sur les deux recombinants Tc-CTL-1 et Tc-CTL-2 ont ete en mesure de differencier l'infection a T. canis d'autres helminthiases chez la souris infectee experimentalement. Conclusions Tc-CTL-1 et Tc-CTL-2 ont ete en mesure de differencier la toxocarose d'autres helminthiases et pourraient potentiellement etre utilises comme antigenes d'immunodiagnostic sensibles et specifiques. Objetivos Identificar antigenos inmunodominantes de Toxocara canis reconocidos por sueros infectados con Toxocara como reactivos recombinantes para el inmunodiagnostico de la toxocariasis. Metodos Se utilizo un pool de sueros de casos de toxocariasis humana para identificar los antigenos inmunodominantes mediante inmunoscreening en una biblioteca de ADNc de larvas de T. canis. Los clones que dieron positivo fueron secuenciados para identificar los antigenos. Las proteinas recombinantes se expresaron en E. coli y se utilizaron para confirmar su inmunoreactividad con sueros de humanos con toxocariasis. Dos antigenos especificos se utilizaron tambien para diferenciar la infeccion por Toxocara de otras infecciones por helmintos en raton. Resultados Se identificaron 11 antigenos con potencial inmunodiagnostico, incluyendo dos lectinas del tipo C (CLT) que reaccionaban fuertemente con el pool de sueros Toxocara-positivos. La primera LTC (Tc- CLT -1) es la misma que TES-32, previamente identificada como el principal componente inmunodominante de TES; la segunda LTC (Tc- CLT -2) es una nueva lectina tipo C que comparte un 83% de la secuencia de aminoacidos dentro del dominio funcional de Tc- CLT -1. La Tc- CLT -1 recombinante expresada en E. coli era altamente reconocida por el pool de sueros Toxocara-positivos o sueros de animales infectados experimentalmente con T. canis. La reactividad con el Tc- CLT -1 recombinante era mayor cuando se utilizaba la proteina bajo condiciones no reductoras en un ELISA, Dot blot o Western blot comparado con la proteina en condiciones reductoras. Las ELISAs en las que se utilizaban la Tc- CLT -1 recombinante y la Tc- CLT -2 recombinante eran capaces de diferenciar la infeccion por T. canis de otras infecciones helminticas en ratones infectados experimentalmente. Conclusiones Tanto Tc- CLT-1 como Tc- CLT-2 eran capaces de diferenciar la infeccion por Toxocara de otras infecciones helminticas y potencialmente podrian utilizarse como antigenos sensibles y especificos para inmunodiagnostico.
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- 2015
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46. Expression, purification, immunogenicity, and protective efficacy of a recombinant Tc24 antigen as a vaccine against Trypanosoma cruzi infection in mice
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Elissa M. Hudspeth, Christopher A. Seid, Molly Hammond, Peter J. Hotez, Viridiana Martinez-Campos, Miguel Rosado-Vallado, Cliff Kwityn, Eric Dumonteil, Maria Jesus Ramirez-Sierra, Zhuyun Liu, Junfei Wei, Bin Zhan, Maria Elena Bottazzi, Pedro Martínez-Vega, and Jaime Ortega-López
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Protozoan Vaccines ,Chagas disease ,Trypanosoma cruzi ,medicine.medical_treatment ,Antibodies, Protozoan ,Gene Expression ,Antigens, Protozoan ,Parasitemia ,Parasite Load ,Pichia ,Interferon-gamma ,Immune system ,Adjuvants, Immunologic ,Antigen ,parasitic diseases ,Escherichia coli ,medicine ,Animals ,Chagas Disease ,Cloning, Molecular ,Mice, Inbred BALB C ,Vaccines, Synthetic ,General Veterinary ,General Immunology and Microbiology ,biology ,Immunogenicity ,Public Health, Environmental and Occupational Health ,Th1 Cells ,medicine.disease ,biology.organism_classification ,Survival Analysis ,Virology ,Recombinant Proteins ,Vaccination ,Disease Models, Animal ,Lipid A ,Infectious Diseases ,Immunology ,Leukocytes, Mononuclear ,Molecular Medicine ,Female ,Adjuvant ,Spleen - Abstract
The Tc24 calcium binding protein from the flagellar pocket of Trypanosoma cruzi is under evaluation as a candidate vaccine antigen against Chagas disease. Previously, a DNA vaccine encoding Tc24 was shown to be an effective vaccine (both as a preventive and therapeutic intervention) in mice and dogs, as evidenced by reductions in T. cruzi parasitemia and cardiac amastigotes, as well as reduced cardiac inflammation and increased host survival. Here we developed a suitable platform for the large scale production of recombinant Tc24 (rTc24) and show that when rTc24 is combined with a monophosphoryl-lipid A (MPLA) adjuvant, the formulated vaccine induces a Th1-biased immune response in mice, comprised of elevated IgG2a antibody levels and interferon-gamma levels from splenocytes, compared to controls. These immune responses also resulted in statistically significant decreased T. cruzi parasitemia and cardiac amastigotes, as well as increased survival following T. cruzi challenge infections, compared to controls. Partial protective efficacy was shown regardless of whether the antigen was expressed in Escherichia coli or in yeast (Pichia pastoris). While mouse vaccinations will require further modifications in order to optimize protective efficacy, such studies provide a basis for further evaluations of vaccines comprised of rTc24, together with alternative adjuvants and additional recombinant antigens.
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- 2015
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47. The parasite-derived rOv-ASP-1 is an effective antigen-sparing CD4
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Sonia, Jain, Parakkal Jovvian, George, Wanyan, Deng, Joseph, Koussa, Kaela, Parkhouse, Scott E, Hensley, Jiu, Jiang, Jie, Lu, Zhuyun, Liu, Junfei, Wei, Bin, Zhan, Maria Elena, Bottazzi, Hao, Shen, and Sara, Lustigman
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Mice, Knockout ,Aging ,Receptors, CXCR3 ,Neutrophils ,Receptors, CCR2 ,Macrophages ,Histocompatibility Antigens Class II ,Helminth Proteins ,T-Lymphocytes, Helper-Inducer ,Viral Load ,Antibodies, Viral ,Survival Analysis ,Monocytes ,Article ,Mice ,Adjuvants, Immunologic ,Gene Expression Regulation ,Orthomyxoviridae Infections ,Influenza Vaccines ,Antigens, Helminth ,Myeloid Differentiation Factor 88 ,Animals ,Female ,Immunization ,Muscle, Skeletal - Abstract
Vaccination remains the most cost-effective biomedical approach for controlling influenza disease. In times of pandemics, however, these vaccines cannot be produced in sufficient quantities for worldwide use by the current manufacturing capacities and practices. What is needed is the development of adjuvanted vaccines capable of inducing an adequate or better immune response at a decreased antigen dose. Previously we showed that the protein adjuvant rOv-ASP-1 augments influenza-specific antibody titers and survival after virus challenge in both young adult and old-age mice when administered with the trivalent inactivated influenza vaccine (IIV3). In this study we show that a reduced amount of rOv-ASP-1, with 40-times less IIV3 can also induce protection. Apparently the potency of the rOv-ASP-1 adjuvanted IIV3 vaccine is independent of the IIV3-specific Th1/Th2 associated antibody responses, and independent of the presence of HAI antibodies. However, CD4(+) T helper cells were indispensable for the protection. Further, rOv-ASP-1 with or without IIV3 elicited the increased level of various chemokines, which are known chemoattractant for immune cells, into the muscle 4 hours after immunization, and significantly induced the recruitment of monocytes, macrophages and neutrophils into the muscles. The recruited monocytes had higher expression of the activation marker MHCII on their surface as well as CXCR3 and CCR2; receptors for IP-10 and MCP-1, respectively. These results show that the rOv-ASP-1 adjuvant allows substantial antigen sparing of IIV3 by stimulating at the site of injection the accumulation of chemokines and the recruitment of immune cells that can augment the activation of CD4(+) T cell immune responses, essential for the production of antibody responses. Protection elicited by the rOv-ASP-1 adjuvanted IIV3 vaccine also appears to function in the absence of MyD88-signaling. Future studies will attempt to delineate the precise mechanisms by which the rOv-ASP-1 adjuvanted IIV3 vaccine works.
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- 2017
48. Yeast-expressed recombinant As16 protects mice against Ascaris suum infection through induction of a Th2-skewed immune response
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Kathryn M. Jones, Neima Briggs, Zhuyun Liu, Peter J. Hotez, Ricardo Toshio Fujiwara, Bin Zhan, Brian Keegan, Ulrich Strych, Junfei Wei, Ana Clara Gazzinelli-Guimarães, Coreen M. Beaumier, Maria Elena Bottazzi, and Leroy Versteeg
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0301 basic medicine ,Life Cycles ,Physiology ,medicine.medical_treatment ,medicine.disease_cause ,Biochemistry ,Immunoglobulin G ,Immunologic Adjuvants ,Mice ,Larvae ,Immune Physiology ,Medicine and Health Sciences ,Public and Occupational Health ,Immune Response ,Ascaris suum ,Vaccines ,Innate Immune System ,Ascariasis ,Mice, Inbred BALB C ,lcsh:Public aspects of medicine ,Cholera toxin ,Vaccination ,Vaccination and Immunization ,Recombinant Proteins ,Infectious Diseases ,Helminth Infections ,Larva ,Cytokines ,Female ,Adjuvant ,Sequence Analysis ,Research Article ,Cholera Toxin ,lcsh:Arctic medicine. Tropical medicine ,Infectious Disease Control ,lcsh:RC955-962 ,Immunology ,Antibodies, Helminth ,Saccharomyces cerevisiae ,Biology ,Microbiology ,03 medical and health sciences ,Immune system ,Th2 Cells ,Adjuvants, Immunologic ,Immunity ,parasitic diseases ,medicine ,Parasitic Diseases ,Animals ,Ascaris ,Public Health, Environmental and Occupational Health ,Biology and Life Sciences ,Proteins ,lcsh:RA1-1270 ,Molecular Development ,biology.organism_classification ,030104 developmental biology ,Immune System ,Antigens, Helminth ,biology.protein ,Preventive Medicine ,Interleukin-4 ,Interleukin-5 ,Developmental Biology - Abstract
Background Ascariasis remains the most common helminth infection in humans. As an alternative or complementary approach to global deworming, a pan-anthelminthic vaccine is under development targeting Ascaris, hookworm, and Trichuris infections. As16 and As14 have previously been described as two genetically related proteins from Ascaris suum that induced protective immunity in mice when formulated with cholera toxin B subunit (CTB) as an adjuvant, but the exact protective mechanism was not well understood. Methodology/Principal findings As16 and As14 were highly expressed as soluble recombinant proteins (rAs16 and rAs14) in Pichia pastoris. The yeast-expressed rAs16 was highly recognized by immune sera from mice infected with A. suum eggs and elicited 99.6% protection against A. suum re-infection. Mice immunized with rAs16 formulated with ISA720 displayed significant larva reduction (36.7%) and stunted larval development against A. suum eggs challenge. The protective immunity was associated with a predominant Th2-type response characterized by high titers of serological IgG1 (IgG1/IgG2a > 2000) and high levels of IL-4 and IL-5 produced by restimulated splenocytes. A similar level of protection was observed in mice immunized with rAs16 formulated with alum (Alhydrogel), known to induce mainly a Th2-type immune response, whereas mice immunized with rAs16 formulated with MPLA or AddaVax, both known to induce a Th1-type biased response, were not significantly protected against A. suum infection. The rAs14 protein was not recognized by A. suum infected mouse sera and mice immunized with rAs14 formulated with ISA720 did not show significant protection against challenge infection, possibly due to the protein’s inaccessibility to the host immune system or a Th1-type response was induced which would counter a protective Th2-type response. Conclusions/Significance Yeast-expressed rAs16 formulated with ISA720 or alum induced significant protection in mice against A. suum egg challenge that associates with a Th2-skewed immune response, suggesting that rAS16 could be a feasible vaccine candidate against ascariasis., Author summary Roundworms (Ascaris) infect more than 700 million people living in poverty worldwide and cause malnutrition and physical and mental developmental delays in children. As an alternative or complementary approach to global deworming, a pan-anthelminthic vaccine is under development that targets ascariasis in addition to other human intestinal nematode infections. Towards this goal, two Ascaris suum antigens, As16 and As14, were expressed in Pichia pastoris as recombinant proteins. Mice immunized with rAs16 formulated with ISA720 adjuvant produced significant larva reduction (36.7%) and stunted larval development against A. suum egg challenge. The protection was associated with predominant Th2-type responses characterized by high levels of serological IgG1 (IgG1/IgG2a > 2,000) and Th2 cytokines, IL-4 and IL-5. A similar level of protection was observed in mice immunized with rAs16 formulated with alum that induces mainly a Th2-type immune response, whereas mice immunized with rAs16 formulated with MPLA or AddaVax, both inducing major Th1-type responses, were not significantly protected against A. suum infection. High-yield expression of rAs16 in yeast will allow for large-scale manufacture, and its protective efficacy when formulated with alum suggests its suitability as a vaccine candidate.
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- 2017
49. Structure of SALO, a leishmaniasis vaccine candidate from the sand fly Lutzomyia longipalpis
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Bin Zhan, Ricardo Toshio Fujiwara, Elissa M. Hudspeth, Jeroen Pollet, Shaden Kamhawi, Wanderson C. Rezende, Fabiano Oliveira, Mallory Jo Groen, Antonio Ferreira Mendes-Sousa, Jesus G. Valenzuela, Maha Abdeladhim, Daniella Castanheira Bartholomeu, Oluwatoyin A. Asojo, Alan Kelleher, Maria Elena Bottazzi, Christopher A. Seid, Zhuyun Liu, Peter J. Hotez, Shannon Townsend, and Waldionê de Castro
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0301 basic medicine ,Odorant binding ,Physiology ,Protein Conformation ,Gene Expression ,Disease Vectors ,Biochemistry ,Pichia ,law.invention ,law ,Immune Physiology ,Zoonoses ,Medicine and Health Sciences ,Macromolecular Structure Analysis ,Immune Response ,Leishmaniasis ,Vaccines ,Immune System Proteins ,biology ,Immunogenicity ,lcsh:Public aspects of medicine ,Recombinant Proteins ,Infectious Diseases ,Recombinant DNA ,Leishmania infantum ,Antibody ,Research Article ,Neglected Tropical Diseases ,Protein Structure ,lcsh:Arctic medicine. Tropical medicine ,Infectious Disease Control ,lcsh:RC955-962 ,Immunology ,Pichia Pastoris ,Antibodies ,Microbiology ,Pichia pastoris ,03 medical and health sciences ,Parasitic Diseases ,Animals ,Salivary Proteins and Peptides ,Molecular Biology ,Protozoan Infections ,Public Health, Environmental and Occupational Health ,Organisms ,Fungi ,Biology and Life Sciences ,Proteins ,lcsh:RA1-1270 ,biology.organism_classification ,Leishmania ,Tropical Diseases ,Yeast ,Insect Vectors ,Sand Flies ,Mice, Inbred C57BL ,Species Interactions ,030104 developmental biology ,biology.protein ,Psychodidae - Abstract
Background Immunity to the sand fly salivary protein SALO (Salivary Anticomplement of Lutzomyia longipalpis) protected hamsters against Leishmania infantum and L. braziliensis infection and, more recently, a vaccine combination of a genetically modified Leishmania with SALO conferred strong protection against L. donovani infection. Because of the importance of SALO as a potential component of a leishmaniasis vaccine, a plan to produce this recombinant protein for future scale manufacturing as well as knowledge of its structural characteristics are needed to move SALO forward for the clinical path. Methodology/Principal findings Recombinant SALO was expressed as a soluble secreted protein using Pichia pastoris, rSALO(P), with yields of 1g/L and >99% purity as assessed by SEC-MALS and SDS-PAGE. Unlike its native counterpart, rSALO(P) does not inhibit the classical pathway of complement; however, antibodies to rSALO(P) inhibit the anti-complement activity of sand fly salivary gland homogenate. Immunization with rSALO(P) produces a delayed type hypersensitivity response in C57BL/6 mice, suggesting rSALO(P) lacked anti-complement activity but retained its immunogenicity. The structure of rSALO(P) was solved by S-SAD at Cu-Kalpha to 1.94 Å and refined to Rfactor 17%. SALO is ~80% helical, has no appreciable structural similarities to any human protein, and has limited structural similarity in the C-terminus to members of insect odorant binding proteins. SALO has three predicted human CD4+ T cell epitopes on surface exposed helices. Conclusions/Significance The results indicate that SALO as expressed and purified from P. pastoris is suitable for further scale-up, manufacturing, and testing. SALO has a novel structure, is not similar to any human proteins, is immunogenic in rodents, and does not have the anti-complement activity observed in the native salivary protein which are all important attributes to move this vaccine candidate forward to the clinical path., Author summary Immunity to sand fly salivary proteins has been shown to confer protection against leishmaniasis in rodent models. Recombinant salivary protein SALO (Salivary Anticomplement of Lutzomyia longipalpis) was shown to protect hamsters against the fatal outcome of visceral leishmaniasis caused by Leishmania infantum and to protect against cutaneous leishmaniasis caused by Leishmania braziliensis. Because of the potential use of this sand fly salivary protein as a component of a vaccine against human visceral leishmaniasis further characterization of SALO needs to be performed as well as a development plan for future scale manufacturing. In this work we present the successful expression and purification of recombinant SALO using Pichia pastoris. SALO from insect saliva inhibits the classical pathway of complement, an activity that may interfere with its role as a vaccine candidate. Here we show that recombinant SALO produced from Pichia pastoris, rSALO(P), does not have the anti-complement activity, and antibodies against rSALO(P) inhibit the anti-complement activity of sand fly saliva, suggesting that the overall structure of SALO is conserved regardless of expression source. The high-resolution structure of SALO was determined by single atom anomalous dispersion and refined to 1.94 Å. SALO is a small compact helical protein with no appreciable structural similarity to anti-complement or any reported mammalian protein structures. Therefore, SALO is a feasible candidate to be incorporated as a component of an effective anti-Leishmania vaccine.
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- 2017
50. Natural Disruption of Two Regulatory Networks in Serotype M3 Group A Streptococcus Isolates Contributes to the Virulence Factor Profile of This Hypervirulent Serotype
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Zhuyun Liu, Tram N. Cao, Kathryn J. Pflughoeft, James M. Musser, Tran H. Cao, Stephen B. Beres, Jeanette Treviño, Jessica L. Danger, and Paul Sumby
- Subjects
Serotype ,Regulation of gene expression ,Genetics ,Streptococcus ,Immunology ,Virulence ,Biology ,medicine.disease_cause ,Molecular Pathogenesis ,Microbiology ,Virulence factor ,Complementation ,Infectious Diseases ,Streptococcus pyogenes ,medicine ,Parasitology ,Gene - Abstract
Despite the public health challenges associated with the emergence of new pathogenic bacterial strains and/or serotypes, there is a dearth of information regarding the molecular mechanisms that drive this variation. Here, we began to address the mechanisms behind serotype-specific variation between serotype M1 and M3 strains of the human pathogen Streptococcus pyogenes (the group A Streptococcus [GAS]). Spatially diverse contemporary clinical serotype M3 isolates were discovered to contain identical inactivating mutations within genes encoding two regulatory systems that control the expression of important virulence factors, including the thrombolytic agent streptokinase, the protease inhibitor-binding protein-G-related α 2 -macroglobulin-binding (GRAB) protein, and the antiphagocytic hyaluronic acid capsule. Subsequent analysis of a larger collection of isolates determined that M3 GAS, since at least the 1920s, has harbored a 4-bp deletion in the fasC gene of the fasBCAX regulatory system and an inactivating polymorphism in the rivR regulator-encoding gene. The fasC and rivR mutations in M3 isolates directly affect the virulence factor profile of M3 GAS, as evident by a reduction in streptokinase expression and an enhancement of GRAB expression. Complementation of the fasC mutation in M3 GAS significantly enhanced levels of the small regulatory RNA FasX, which in turn enhanced streptokinase expression. Complementation of the rivR mutation in M3 GAS restored the regulation of grab mRNA abundance but did not alter capsule mRNA levels. While important, the fasC and rivR mutations do not provide a full explanation for why serotype M3 strains are associated with unusually severe invasive infections; thus, further investigation is warranted.
- Published
- 2014
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