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Single-cell RNA sequencing (scRNA-seq) allows transcriptional profiling, and cell-type annotation of individual cells. However, sample preparation in typical scRNA-seq experiments often homogenizes the samples, thus spatial locations of individual cells are often lost. Although spatial transcriptomic techniques, such as in situ hybridization (ISH) or Slide-seq, can be used to measure gene expression in specific locations in samples, it remains a challenge to measure or infer expression level for every gene at a single-cell resolution in every location in tissues. Existing computational methods show promise in reconstructing these missing data by integrating scRNA-seq data with spatial expression data such as those obtained from spatial transcriptomics. Here we describe Laplacian Linear Optimal Transport (LLOT), an interpretable method to integrate single-cell and spatial transcriptomics data to reconstruct missing information at a whole-genome and single-cell resolution. LLOT iteratively corrects platform effects and employs Laplacian Optimal Transport to decompose each spot in spatial transcriptomics data into a spatially-smooth probabilistic mixture of single cells. We benchmarked LLOT against several other methods on datasets of Drosophila embryo, mouse cerebellum and synthetic datasets generated by scDesign3 in the paper, and another three datasets in the supplementary. The results showed that LLOT consistently outperformed others in reconstructing spatial expressions.

Instruction tuning is crucial for enabling Language Learning Models (LLMs) in responding to human instructions. The quality of instruction pairs used for tuning greatly affects the performance of LLMs. However, the manual creation of high-quality instruction datasets is costly, leading to the adoption of automatic generation of instruction pairs by LLMs as a popular alternative. To ensure the high quality of LLM-generated instruction datasets, several approaches have been proposed. Nevertheless, existing methods either compromise dataset integrity by filtering a large proportion of samples, or are unsuitable for industrial applications. In this paper, instead of discarding low-quality samples, we propose CoachLM, a novel approach to enhance the quality of instruction datasets through automatic revisions on samples in the dataset. CoachLM is trained from the samples revised by human experts and significantly increases the proportion of high-quality samples in the dataset from 17.7% to 78.9%. The effectiveness of CoachLM is further assessed on various real-world instruction test sets. The results show that CoachLM improves the instruction-following capabilities of the instruction-tuned LLM by an average of 29.9%, which even surpasses larger LLMs with nearly twice the number of parameters. Furthermore, CoachLM is successfully deployed in a data management system for LLMs at Huawei, resulting in an efficiency improvement of up to 20% in the cleaning of 40k real-world instruction pairs. We release various assets of CoachLM, including the training data, code and test set (https://github.com/lunyiliu/CoachLM)., Comment: Accepted by ICDE 2024

Multimodal sentiment analysis (MSA) is an important way of observing mental activities with the help of data captured from multiple modalities. However, due to the recording or transmission error, some modalities may include incomplete data. Most existing works that address missing modalities usually assume a particular modality is completely missing and seldom consider a mixture of missing across multiple modalities. In this paper, we propose a simple yet effective meta-sampling approach for multimodal sentiment analysis with missing modalities, namely Missing Modality-based Meta Sampling (M3S). To be specific, M3S formulates a missing modality sampling strategy into the modal agnostic meta-learning (MAML) framework. M3S can be treated as an efficient add-on training component on existing models and significantly improve their performances on multimodal data with a mixture of missing modalities. We conduct experiments on IEMOCAP, SIMS and CMU-MOSI datasets, and superior performance is achieved compared with recent state-of-the-art methods.

Entity Matching (EM), which aims to identify whether two entity records from two relational tables refer to the same real-world entity, is one of the fundamental problems in data management. Traditional EM assumes that two tables are homogeneous with the aligned schema, while it is common that entity records of different formats (e.g., relational, semi-structured, or textual types) involve in practical scenarios. It is not practical to unify their schemas due to the different formats. To support EM on format-different entity records, Generalized Entity Matching (GEM) has been proposed and gained much attention recently. To do GEM, existing methods typically perform in a supervised learning way, which relies on a large amount of high-quality labeled examples. However, the labeling process is extremely labor-intensive, and frustrates the use of GEM. Low-resource GEM, i.e., GEM that only requires a small number of labeled examples, becomes an urgent need. To this end, this paper, for the first time, focuses on the low-resource GEM and proposes a novel low-resource GEM method, termed as PromptEM. PromptEM has addressed three challenging issues (i.e., designing GEM-specific prompt-tuning, improving pseudo-labels quality, and running efficient self-training) in low-resource GEM. Extensive experimental results on eight real benchmarks demonstrate the superiority of PromptEM in terms of effectiveness and efficiency.

Distribution function is essential in statistical inference, and connected with samples to form a directed closed loop by the correspondence theorem in measure theory and the Glivenko-Cantelli and Donsker properties. This connection creates a paradigm for statistical inference. However, existing distribution functions are defined in Euclidean spaces and no longer convenient to use in rapidly evolving data objects of complex nature. It is imperative to develop the concept of distribution function in a more general space to meet emerging needs. Note that the linearity allows us to use hypercubes to define the distribution function in a Euclidean space, but without the linearity in a metric space, we must work with the metric to investigate the probability measure. We introduce a class of metric distribution functions through the metric between random objects and a fixed location in metric spaces. We overcome this challenging step by proving the correspondence theorem and the Glivenko-Cantelli theorem for metric distribution functions in metric spaces that lie the foundation for conducting rational statistical inference for metric space-valued data. Then, we develop homogeneity test and mutual independence test for non-Euclidean random objects, and present comprehensive empirical evidence to support the performance of our proposed methods.

With the rapid development of artificial intelligence, a number of machine learning algorithms, such as graph neural networks have been proposed to facilitate network analysis or graph data mining. Although effective, recent studies show that these advanced methods may suffer from adversarial attacks, i.e., they may lose effectiveness when only a small fraction of links are unexpectedly changed. This paper investigates three well-known adversarial attack methods, i.e., Nettack, Meta Attack, and GradArgmax. It is found that different attack methods have their specific attack preferences on changing the target network structures. Such attack pattern are further verified by experimental results on some real-world networks, revealing that generally the top four most important network attributes on detecting adversarial samples suffice to explain the preference of an attack method. Based on these findings, the network attributes are utilized to design machine learning models for adversarial sample detection and attack method recognition with outstanding performance.

In this paper, we implement three state-of-art continuous reinforcement learning algorithms, Deep Deterministic Policy Gradient (DDPG), Proximal Policy Optimization (PPO) and Policy Gradient (PG)in portfolio management. All of them are widely-used in game playing and robot control. What's more, PPO has appealing theoretical propeties which is hopefully potential in portfolio management. We present the performances of them under different settings, including different learning rates, objective functions, feature combinations, in order to provide insights for parameters tuning, features selection and data preparation. We also conduct intensive experiments in China Stock market and show that PG is more desirable in financial market than DDPG and PPO, although both of them are more advanced. What's more, we propose a so called Adversarial Training method and show that it can greatly improve the training efficiency and significantly promote average daily return and sharpe ratio in back test. Based on this new modification, our experiments results show that our agent based on Policy Gradient can outperform UCRP.