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Biomedical image segmentation is crucial for accurately diagnosing and analyzing various diseases. However, Convolutional Neural Networks (CNNs) and Transformers, the most commonly used architectures for this task, struggle to effectively capture long-range dependencies due to the inherent locality of CNNs and the computational complexity of Transformers. To address this limitation, we introduce TTT-Unet, a novel framework that integrates Test-Time Training (TTT) layers into the traditional U-Net architecture for biomedical image segmentation. TTT-Unet dynamically adjusts model parameters during the testing time, enhancing the model's ability to capture both local and long-range features. We evaluate TTT-Unet on multiple medical imaging datasets, including 3D abdominal organ segmentation in CT and MR images, instrument segmentation in endoscopy images, and cell segmentation in microscopy images. The results demonstrate that TTT-Unet consistently outperforms state-of-the-art CNN-based and Transformer-based segmentation models across all tasks. The code is available at https://github.com/rongzhou7/TTT-Unet.

We construct integral models of Shimura varieties of abelian type with parahoric level structure over odd primes. These models are \'etale locally isomorphic to corresponding local models., Comment: 88 pages. Comments welcome

Medical image segmentation and video object segmentation are essential for diagnosing and analyzing diseases by identifying and measuring biological structures. Recent advances in natural domain have been driven by foundation models like the Segment Anything Model 2 (SAM-2). To explore the performance of SAM-2 in biomedical applications, we designed three evaluation pipelines for single-frame 2D image segmentation, multi-frame 3D image segmentation and multi-frame video segmentation with varied prompt designs, revealing SAM-2's limitations in medical contexts. Consequently, we developed BioSAM-2, an enhanced foundation model optimized for biomedical data based on SAM-2. Our experiments show that BioSAM-2 not only surpasses the performance of existing state-of-the-art foundation models but also matches or even exceeds specialist models, demonstrating its efficacy and potential in the medical domain.

Vision Transformers (ViTs) have achieved remarkable performance in various image classification tasks by leveraging the attention mechanism to process image patches as tokens. However, the high computational and memory demands of ViTs pose significant challenges for deployment in resource-constrained environments. This paper introduces ViT-1.58b, a novel 1.58-bit quantized ViT model designed to drastically reduce memory and computational overhead while preserving competitive performance. ViT-1.58b employs ternary quantization, which refines the balance between efficiency and accuracy by constraining weights to {-1, 0, 1} and quantizing activations to 8-bit precision. Our approach ensures efficient scaling in terms of both memory and computation. Experiments on CIFAR-10 and ImageNet-1k demonstrate that ViT-1.58b maintains comparable accuracy to full-precision Vit, with significant reductions in memory usage and computational costs. This paper highlights the potential of extreme quantization techniques in developing sustainable AI solutions and contributes to the broader discourse on efficient model deployment in practical applications. Our code and weights are available at https://github.com/DLYuanGod/ViT-1.58b.

The concept of Digital Twin (DT) is increasingly applied to systems on different levels of abstraction across domains, to support monitoring, analysis, diagnosis, decision making and automated control. Whilst the interest in applying DT is growing, the definition of DT is unclear, neither is there a clear pathway to develop DT to fully realise its capacities. In this paper, we revise the concept of DT and its categorisation. We propose a DT maturity matrix, based on which we propose a model-based DT development methodology. We also discuss how model-based tools can be used to support the methodology and present our own supporting tool. We report our preliminary findings with a discussion on a case study, in which we use our proposed methodology and our supporting tool to develop an extensible DT platform for the assurance of Electrical and Electronics systems of space launch vehicles.

MTL is a learning paradigm that effectively leverages both task-specific and shared information to address multiple related tasks simultaneously. In contrast to STL, MTL offers a suite of benefits that enhance both the training process and the inference efficiency. MTL's key advantages encompass streamlined model architecture, performance enhancement, and cross-domain generalizability. Over the past twenty years, MTL has become widely recognized as a flexible and effective approach in various fields, including CV, NLP, recommendation systems, disease prognosis and diagnosis, and robotics. This survey provides a comprehensive overview of the evolution of MTL, encompassing the technical aspects of cutting-edge methods from traditional approaches to deep learning and the latest trend of pretrained foundation models. Our survey methodically categorizes MTL techniques into five key areas: regularization, relationship learning, feature propagation, optimization, and pre-training. This categorization not only chronologically outlines the development of MTL but also dives into various specialized strategies within each category. Furthermore, the survey reveals how the MTL evolves from handling a fixed set of tasks to embracing a more flexible approach free from task or modality constraints. It explores the concepts of task-promptable and -agnostic training, along with the capacity for ZSL, which unleashes the untapped potential of this historically coveted learning paradigm. Overall, we hope this survey provides the research community with a comprehensive overview of the advancements in MTL from its inception in 1997 to the present in 2023. We address present challenges and look ahead to future possibilities, shedding light on the opportunities and potential avenues for MTL research in a broad manner. This project is publicly available at https://github.com/junfish/Awesome-Multitask-Learning., Comment: 60 figures, 116 pages, 500+ references

In this paper, we first consider the curve case of Hu-Li-Wei's flow for shifted principal curvatures of h-convex hypersurfaces in $\mathbb{H}^{n+1}$ proposed in [10]. We prove that if the initial closed curve is smooth and strictly h-convex, then the solution exists for all time and preserves strict h-convexity along the flow. Moreover, the evolving curve converges smoothly and exponentially to a geodesic circle centered at the origin. The key ingredient in our proof is the Heintze-Karcher type inequality for h-convex curves proved recently in [14]. As an application, we then provide a new proof of geometric inequalities involving weighted curvature integrals and modified quermassintegrals for h-convex curves in $\mathbb{H}^2$. We finally discuss the stability of these inequalities as well as Alexandrov-Fenchel type inequalities for modified quermassintegrals for strictly h-convex domains in $\mathbb{H}^{n+1}$., Comment: 26 pages

We give a simple and uniform proof of a conjecture of Haines-Richarz characterizing the smooth locus of Schubert varieties in twisted affine Grassmannians. Our method is elementary and avoids any representation theoretic techniques, instead relying on a combinatorial analysis of tangent spaces of Schubert varieties., Comment: 16 pages. Minor changes

In this paper, we critically evaluate the capabilities of the state-of-the-art multimodal large language model, i.e., GPT-4 with Vision (GPT-4V), on Visual Question Answering (VQA) task. Our experiments thoroughly assess GPT-4V's proficiency in answering questions paired with images using both pathology and radiology datasets from 11 modalities (e.g. Microscopy, Dermoscopy, X-ray, CT, etc.) and fifteen objects of interests (brain, liver, lung, etc.). Our datasets encompass a comprehensive range of medical inquiries, including sixteen distinct question types. Throughout our evaluations, we devised textual prompts for GPT-4V, directing it to synergize visual and textual information. The experiments with accuracy score conclude that the current version of GPT-4V is not recommended for real-world diagnostics due to its unreliable and suboptimal accuracy in responding to diagnostic medical questions. In addition, we delineate seven unique facets of GPT-4V's behavior in medical VQA, highlighting its constraints within this complex arena. The complete details of our evaluation cases are accessible at https://github.com/ZhilingYan/GPT4V-Medical-Report.

In this paper, we first derive a quantitative quermassintegral inequality for nearly spherical sets in $\mathbb{H}^{n+1}$ and $\mathbb{S}^{n+1}$, which is a generalization of the quantitative Alexandrov-Fenchel inequality proved in $\mathbb{R}^{n+1}$ [22]. Then we use this method to derive the stability of some geometric inequalities involving weighted curvature integrals and quermassintegrals for nearly spherical sets in $\mathbb{R}^{n+1}$ and $\mathbb{H}^{n+1}$., Comment: 24 pages

Traditional biomedical artificial intelligence (AI) models, designed for specific tasks or modalities, often exhibit limited flexibility in real-world deployment and struggle to utilize holistic information. Generalist AI holds the potential to address these limitations due to its versatility in interpreting different data types and generating tailored outputs for diverse needs. However, existing biomedical generalist AI solutions are typically heavyweight and closed source to researchers, practitioners, and patients. Here, we propose BiomedGPT, the first open-source and lightweight vision-language foundation model, designed as a generalist capable of performing various biomedical tasks. BiomedGPT achieved state-of-the-art results in 16 out of 25 experiments while maintaining a computing-friendly model scale. We also conducted human evaluations to assess the capabilities of BiomedGPT in radiology visual question answering, report generation, and summarization. BiomedGPT exhibits robust prediction ability with a low error rate of 3.8% in question answering, satisfactory performance with an error rate of 8.3% in writing complex radiology reports, and competitive summarization ability with a nearly equivalent preference score to human experts. Our method demonstrates that effective training with diverse data can lead to more practical biomedical AI for improving diagnosis and workflow efficiency., Comment: Fix incorrect citations and add journal reference for the published version. Nat Med (2024)

We prove two anisotropic type weighted geometric inequalities that hold for star-shaped and $F$-mean convex hypersurfaces in $\mathbb{R}^{n+1}$. These inequalities involve the anisotropic $p$-momentum, the anisotropic perimeter and the volume of the region enclosed by the hypersurface. We show that the Wulff shape of $F$ is the unique minimizer of the corresponding functionals among all star-shaped and $F$-mean convex sets. We also consider their quantitative versions characterized by the Hausdorff distance between the hypersurface and a rescaled Wulff shape. As a corollary, we obtain the stability of the Weinstock inequality for star-shaped and strictly mean convex domains, which requires weaker convexity compared to \cite{Gavitone}., Comment: 17 pages

Jet precession has previously been proposed to explain the apparently repeating features in the light curves of a few gamma-ray bursts (GRBs). In this {\it Letter}, we further apply the precession model to a bright GRB 220408B by examining both its temporal and spectral consistency with the predictions of the model. As one of the recently confirmed GRBs observed by our GRID CubeSat mission, GRB 220408B is noteworthy as it exhibits three apparently similar emission episodes. Furthermore, the similarities are reinforced by their strong temporal correlations and similar features in terms of spectral evolution and spectral lags. Our analysis demonstrates that these features can be well explained by the modulated emission of a Fast-Rise-Exponential-Decay (FRED) shape light curve intrinsically produced by a precessing jet with a precession period of $18.4 \pm 0.2$ seconds, a nutation period of $11.1 \pm 0.2$ seconds and viewed off-axis. This study provides a straightforward explanation for the complex yet similar multi-episode GRB light curves., Comment: 11 pages, 3 tables, 8 figures

Normative modeling is an emerging and promising approach to effectively study disorder heterogeneity in individual participants. In this study, we propose a novel normative modeling method by combining conditional variational autoencoder with adversarial learning (ACVAE) to identify brain dysfunction in Alzheimer's Disease (AD). Specifically, we first train a conditional VAE on the healthy control (HC) group to create a normative model conditioned on covariates like age, gender and intracranial volume. Then we incorporate an adversarial training process to construct a discriminative feature space that can better generalize to unseen data. Finally, we compute deviations from the normal criterion at the patient level to determine which brain regions were associated with AD. Our experiments on OASIS-3 database show that the deviation maps generated by our model exhibit higher sensitivity to AD compared to other deep normative models, and are able to better identify differences between the AD and HC groups., Comment: 5 pages, 3 figures, conference

Purpose: To accelerate radially sampled diffusion weighted spin-echo (Rad-DW-SE) acquisition method for generating high quality apparent diffusion coefficient (ADC) maps. Methods: A deep learning method was developed to generate accurate ADC maps from accelerated DWI data acquired with the Rad-DW-SE method. The deep learning method integrates convolutional neural networks (CNNs) with vision transformers to generate high quality ADC maps from accelerated DWI data, regularized by a monoexponential ADC model fitting term. A model was trained on DWI data of 147 mice and evaluated on DWI data of 36 mice, with acceleration factors of 4x and 8x compared to the original acquisition parameters. We have made our code publicly available at GitHub: https://github.com/ymli39/DeepADC-Net-Learning-Apparent-Diffusion-Coefficient-Maps, and our dataset can be downloaded at https://pennpancreaticcancerimagingresource.github.io/data.html. Results: Ablation studies and experimental results have demonstrated that the proposed deep learning model generates higher quality ADC maps from accelerated DWI data than alternative deep learning methods under comparison when their performance is quantified in whole images as well as in regions of interest, including tumors, kidneys, and muscles. Conclusions: The deep learning method with integrated CNNs and transformers provides an effective means to accurately compute ADC maps from accelerated DWI data acquired with the Rad-DW-SE method., Comment: Accepted by Magnetic Resonance in Medicine