39 results on '"Zhongde Ye"'
Search Results
2. miR-181a-regulated pathways in T-cell differentiation and aging
- Author
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Chulwoo Kim, Zhongde Ye, Cornelia M. Weyand, and Jörg J. Goronzy
- Subjects
microRNA ,miR-181a ,T cell aging ,T cell differentiation ,T cell activation ,Memory T cells ,Immunologic diseases. Allergy ,RC581-607 ,Geriatrics ,RC952-954.6 - Abstract
Abstract MicroRNAs (miRNAs) are regulatory noncoding RNAs important for many aspects of cellular processes including cell differentiation and proliferation. Functions of numerous miRNAs have been identified in T cells, with miR-181a regulating T cell activation thresholds during thymic T cell development and during activation of peripheral T cells. Intriguingly, miR-181a is implicated in defective antiviral and vaccine responses in older individuals, as its expression declines in naïve T cells with increasing age. Here, we review the pathways that are regulated by miR-181a and that explain the unique role of miR-181a in T cell development, T cell activation and antiviral T cell responses. These studies provide a framework for understanding how a decline in miR-181a expression in T cells could contribute to age-related defects in adaptive immunity. We furthermore review the mechanisms that cause the age-related decline in miR-181a expression and discuss the potential of restoring miR-181a expression or targeting miR-181a-regulated pathways to improve impaired T cell responses in older individuals.
- Published
- 2021
- Full Text
- View/download PDF
3. The GSK3β-β-catenin-TCF1 pathway improves naive T cell activation in old adults by upregulating miR-181a
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Zhongde Ye, Timothy M. Gould, Huimin Zhang, Jun Jin, Cornelia M. Weyand, and Jörg J. Goronzy
- Subjects
Geriatrics ,RC952-954.6 - Abstract
Abstract MicroRNAs play an important role in the regulation of T cell development, activation, and differentiation. One of the most abundant microRNAs in lymphocytes is miR-181a, which controls T cell receptor (TCR) activation thresholds in thymic selection as well as in peripheral T cell responses. We previously found that miR-181a levels decline in T cells in the elderly. In this study, we identified TCF1 as a transcriptional regulator of pri-miR-181a. A decline in TCF1 levels in old individuals accounted for the reduced miR-181a expression impairing TCR signaling. Inhibition of GSK3ß restored expression of miR-181a by inducing TCF1 in T cells from old adults. GSK3ß inhibition enhanced TCR signaling to increase downstream expression of activation markers and production of IL-2. The effect involved the upregulation of miR-181a and the inhibition of DUSP6 expression. Thus, inhibition of GSK3ß can restore responses of old T cells by inducing miR-181a expression through TCF1.
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- 2021
- Full Text
- View/download PDF
4. Arachidonic acid-regulated calcium signaling in T cells from patients with rheumatoid arthritis promotes synovial inflammation
- Author
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Zhongde Ye, Yi Shen, Ke Jin, Jingtao Qiu, Bin Hu, Rohit R. Jadhav, Khushboo Sheth, Cornelia M. Weyand, and Jörg J. Goronzy
- Subjects
Science - Abstract
ORAI3 is part of pore forming calcium channels involved in T cell activation. Here the authors show that there is increased expression of ORAI3 in T cells from patients with rheumatoid arthritis and that the transcription factor IKAROS negatively regulates the ORAI3 promoter, indicating a regulatory loop that can control auto-reactivity of T cells in these patients.
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- 2021
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5. Corrigendum: Distinct Age-Related Epigenetic Signatures in CD4 and CD8 T Cells
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Bin Hu, Rohit R. Jadhav, Claire E. Gustafson, Sabine Le Saux, Zhongde Ye, Xuanying Li, Lu Tian, Cornelia M. Weyand, and Jörg J. Goronzy
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ribosomal proteins ,chromatin accessibility ,epigenetics ,T-cell ,aging ,T-cell homeostasis ,Immunologic diseases. Allergy ,RC581-607 - Published
- 2022
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- View/download PDF
6. Reduced chromatin accessibility to CD4 T cell super-enhancers encompassing susceptibility loci of rheumatoid arthritis
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Rohit R. Jadhav, Bin Hu, Zhongde Ye, Khushboo Sheth, Xuanying Li, William J. Greenleaf, Cornelia M. Weyand, and Jörg J. Goronzy
- Subjects
Rheumatoid arthritis ,Super-enhancer ,Susceptibility loci ,Epigenome ,Chromatin accessibility ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Rheumatoid arthritis (RA) is an inflammatory disease that manifests as a preclinical stage of systemic autoimmunity followed by chronic progressive synovitis. Disease-associated genetic SNP variants predominantly map to non-coding, regulatory regions of functional importance in CD4 T cells, implicating these cells as key regulators. A better understanding of the epigenome of CD4 T cells holds the promise of providing information on the interaction between genetic susceptibility and exogenous factors. Methods: We mapped regions of chromatin accessibility using ATAC-seq in peripheral CD4 T cell subsets of patients with RA (n=18) and compared them to T cells from patients with psoriatic arthritis (n=11) and age-matched healthy controls (n=10). Transcripts of selected genes were quantified using qPCR. Findings: RA-associated epigenetic signatures were identified that in part overlapped between central and effector memory CD4 T cells and that were to a lesser extent already present in naïve cells. Sites more accessible in RA were highly enriched for the motif of the transcription factor (TF) CTCF suggesting differences in the three-dimensional chromatin structure. Unexpectedly, sites with reduced chromatin accessibility were enriched for motifs of TFs pertinent for T cell function. Most strikingly, super-enhancers encompassing RA-associated SNPs were less accessible. Analysis of selected transcripts and published DNA methylation patterns were consistent with this finding. The preferential loss in accessibility at these super-enhancers was seen in patients with high and low disease activity and on a variety of immunosuppressive treatment modalities. Interpretation: Disease-associated genes are epigenetically less poised to respond in CD4 T cells from patients with established RA. Funding: This work was supported by I01 BX001669 from the Veterans Administration.
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- 2022
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7. Distinct Age-Related Epigenetic Signatures in CD4 and CD8 T Cells
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Bin Hu, Rohit R. Jadhav, Claire E. Gustafson, Sabine Le Saux, Zhongde Ye, Xuanying Li, Lu Tian, Cornelia M. Weyand, and Jörg J. Goronzy
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ribosomal proteins ,chromatin accessibility ,epigenetics ,T-cell ,aging ,T-cell homeostasis ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Healthy immune aging is in part determined by how well the sizes of naïve T cell compartments are being maintained with advancing age. Throughout adult life, replenishment largely derives from homeostatic proliferation of existing naïve and memory T cell populations. However, while the subpopulation composition of CD4 T cells is relatively stable, the CD8 T cell compartment undergoes more drastic changes with loss of naïve CD8 T cells and accumulation of effector T cells, suggesting that CD4 T cells are more resilient to resist age-associated changes. To determine the epigenetic basis for these differences in behaviors, we compared chromatin accessibility maps of CD4 and CD8 T cell subsets from young and old individuals and related the results to the expressed transcriptome. The dominant age-associated signatures resembled hallmarks of differentiation, which were more pronounced for CD8 naïve and memory than the corresponding CD4 T cell subsets, indicating that CD8 T cells are less able to keep cellular quiescence upon homeostatic proliferation. In parallel, CD8 T cells from old adults, irrespective of their differentiation state, displayed greater reduced accessibility to genes of basic cell biological function, including genes encoding ribosomal proteins. One possible mechanism is the reduced expression of the transcription factors YY1 and NRF1. Our data suggest that chromatin accessibility signatures can be identified that distinguish CD4 and CD8 T cells from old adults and that may confer the higher resilience of CD4 T cells to aging.
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- 2020
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8. Regulation of miR-181a expression in T cell aging
- Author
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Zhongde Ye, Guangjin Li, Chulwoo Kim, Bin Hu, Rohit R. Jadhav, Cornelia M. Weyand, and Jörg J. Goronzy
- Subjects
Science - Abstract
MicroRNA miR-181a has been implicated in the regulation of T cell activation and development. Here the authors show that miR-181a is regulated by a transcription factor, YY1, with reduced YY1 expression linked to reduced miR-181a in old individuals, while silencing YY1 impairs T cell functions largely through influencing the expression of miR-181a targets.
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- 2018
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9. Expression of CD39 on Activated T Cells Impairs their Survival in Older Individuals
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Fengqin Fang, Mingcan Yu, Mary M. Cavanagh, Jessica Hutter Saunders, Qian Qi, Zhongde Ye, Sabine Le Saux, William Sultan, Emerson Turgano, Cornelia L. Dekker, Lu Tian, Cornelia M. Weyand, and Jörg J. Goronzy
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Summary: In an immune response, CD4+ T cells expand into effector T cells and then contract to survive as long-lived memory cells. To identify age-associated defects in memory cell formation, we profiled activated CD4+ T cells and found an increased induction of the ATPase CD39 with age. CD39+ CD4+ T cells resembled effector T cells with signs of metabolic stress and high susceptibility to undergo apoptosis. Pharmacological inhibition of ATPase activity dampened effector cell differentiation and improved survival, suggesting that CD39 activity influences T cell fate. Individuals carrying a low-expressing CD39 variant responded better to vaccination with an increase in vaccine-specific memory T cells. Increased inducibility of CD39 after activation may contribute to the impaired vaccine response with age. : Fang et al. report that the ATPase activity of CD39 regulates differentiation and apoptosis of effector T cells. They propose that increased CD39 expression in T cells with age promotes T cell apoptosis in older individuals and contributes to age-dependent impairment in responses to vaccination.
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- 2016
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10. Inflammation and Autoimmunity: From Gut to Remote Tissues
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Qinghui Mu, Huiyuan Guo, Zhongde Ye, and Sean Spencer
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- 2023
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11. miR-181a-regulated pathways in T-cell differentiation and aging
- Author
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Jörg J. Goronzy, Chulwoo Kim, Cornelia M. Weyand, and Zhongde Ye
- Subjects
0301 basic medicine ,Aging ,T cell ,Cellular differentiation ,Immunology ,T cell differentiation ,miR-181a ,Review ,Biology ,Memory T cells ,T cell aging ,03 medical and health sciences ,0302 clinical medicine ,microRNA ,medicine ,Infectious disease ,Replication stress ,Geriatrics gerontology ,T cell activation ,RC952-954.6 ,RC581-607 ,Acquired immune system ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,Geriatrics ,030220 oncology & carcinogenesis ,biology.protein ,Antibody ,Immunologic diseases. Allergy ,Vaccine - Abstract
MicroRNAs (miRNAs) are regulatory noncoding RNAs important for many aspects of cellular processes including cell differentiation and proliferation. Functions of numerous miRNAs have been identified in T cells, with miR-181a regulating T cell activation thresholds during thymic T cell development and during activation of peripheral T cells. Intriguingly, miR-181a is implicated in defective antiviral and vaccine responses in older individuals, as its expression declines in naïve T cells with increasing age. Here, we review the pathways that are regulated by miR-181a and that explain the unique role of miR-181a in T cell development, T cell activation and antiviral T cell responses. These studies provide a framework for understanding how a decline in miR-181a expression in T cells could contribute to age-related defects in adaptive immunity. We furthermore review the mechanisms that cause the age-related decline in miR-181a expression and discuss the potential of restoring miR-181a expression or targeting miR-181a-regulated pathways to improve impaired T cell responses in older individuals.
- Published
- 2021
12. The pleiotropic benefits of statins include the ability to reduce CD47 and amplify the effect of pro-efferocytic therapies in atherosclerosis
- Author
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Kai-Uwe Jarr, Jianqin Ye, Yoko Kojima, Zhongde Ye, Hua Gao, Sofie Schmid, Lingfeng Luo, Richard A. Baylis, Mozhgan Lotfi, Nicolas Lopez, Anne V. Eberhard, Bryan Ronain Smith, Irving L. Weissman, Lars Maegdefessel, and Nicholas J. Leeper
- Abstract
The pleiotropic benefits of statins may result from their impact on vascular inflammation. The molecular process underlying this phenomenon is not fully elucidated. Here, RNA sequencing designed to investigate gene expression patterns following CD47-SIRPα inhibition identifies a link between statins, efferocytosis, and vascular inflammation. In vivo and in vitro studies provide evidence that statins augment programmed cell removal by inhibiting the nuclear translocation of NFκB1 p50 and suppressing the expression of the critical 'don't eat me' molecule, CD47. Statins amplify the phagocytic capacity of macrophages, and thus the anti-atherosclerotic effects of CD47-SIRPα blockade, in an additive manner. Analyses of clinical biobank specimens suggest a similar link between statins and CD47 expression in humans, highlighting the potential translational implications. Taken together, our findings identify efferocytosis and CD47 as pivotal mediators of statin pleiotropy. In turn, statins amplify the anti-atherosclerotic effects of pro-phagocytic therapies independently of any lipid-lowering effect.
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- 2022
13. Abstract 2933: Novel CD123xCD3 bispecific IgM antibody, IGM-2537, potently induces T-cell mediated cytotoxicity of acute myeloid leukemia cells with minimal cytokine release
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Gene Li, Ling Wang, Poonam Yakkundi, Paul Hinton, Deepal Pandya, Keerthana Sekar, Rodine Rosete, Zhongde Ye, Nardeen Hanna, Maya F. Kotturi, Liz Bogaert, Jiyoung Hong, Christina Tsai, Thomas Manley, Bruce A. Keyt, Angus M. Sinclair, and Liqin Liu
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Cancer Research ,Oncology - Abstract
Novel therapeutics are needed for the effective treatment of acute myeloid leukemia (AML), as standard chemotherapeutics are poorly tolerated and ~50% of patients relapse primarily due to the incomplete elimination of leukemia stem cells (LSCs). CD123, the IL-3Rα chain, is highly expressed on leukemic blasts, LSCs, and is further increased in patients with poor prognostic factors. Bispecific T-cell engager (TCE) antibodies and CAR-T cells targeting CD123 have shown promising clinical efficacy in AML patients, but cytokine release syndrome limits their therapeutic window and remains a major safety concern. IGM-2537 is a novel pentameric IgM bispecific TCE antibody engineered with ten anti-CD123 binding sites, and an anti-CD3ε single chain Fv domain fused to the joining chain to engage T-cells. Here, we report the functional characterization of IGM-2537 using in vitro, ex vivo and in vivo anti-tumor efficacy studies with preliminary safety evaluation of this novel class of IgM TCE. IGM-2537 bound with high selectivity, affinity and avidity to CD123 through an epitope distinct from IL-3. In vitro, IGM-2537 co-engaged with both CD123 and CD3 to induce potent T-cell activation and T-cell mediated cytotoxicity of AML cell lines. Though IGM-2537 demonstrated comparable maximal killing activity to a comparator IgG TCE, IGM-2537 demonstrated minimal cytokine release. In ex vivo patient-derived AML or normal bone marrow colony formation assays, IGM-2537 eliminated AML colony forming cells at physiologically relevant effector/target (E/T) ratios but spared normal progenitors. In addition, IGM-2537 potently depleted CD123+ basophils and plasmacytoid dendritic cells (pDC) in normal human peripheral blood mononuclear cells. In vivo, IGM-2537 completely inhibited tumor growth in the AML xenograft tumor model, MV4-11 in humanized NSGdKO mice at doses as low as 1 mg/kg. To further evaluate the potency and safety of the CD123xCD3 IgM bispecific TCE format in vivo, a cynomolgus cross-reactive CD123xCD3 IgM bispecific TCE was evaluated for tolerability and pharmacodynamic responses in cynomolgus monkeys. All animals tolerated this bispecific IgM TCE well at doses up to 10 mg/kg (the maximal dose level evaluated), a dose 100-fold greater than published doses of a comparator IgG TCE. Complete depletion of CD123+ basophils and substantial reductions of pDCs were seen in blood and bone marrow with minimal to no cytokine induction. In summary, IGM-2537 demonstrated potent in vitro and in vivo T-cell mediated cytotoxicity of AML cell lines with minimal cytokine induction. These preclinical data further support the clinical development of IGM-2537 for the treatment of AML and more broadly substantiate the use of IgM antibodies as a framework for TCEs to provide an improved therapeutic window for T-cell redirected therapeutics. Citation Format: Gene Li, Ling Wang, Poonam Yakkundi, Paul Hinton, Deepal Pandya, Keerthana Sekar, Rodine Rosete, Zhongde Ye, Nardeen Hanna, Maya F. Kotturi, Liz Bogaert, Jiyoung Hong, Christina Tsai, Thomas Manley, Bruce A. Keyt, Angus M. Sinclair, Liqin Liu. Novel CD123xCD3 bispecific IgM antibody, IGM-2537, potently induces T-cell mediated cytotoxicity of acute myeloid leukemia cells with minimal cytokine release [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 2933.
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- 2023
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14. Reduced chromatin accessibility to CD4 T cell super-enhancers encompassing susceptibility loci of rheumatoid arthritis
- Author
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Rohit R. Jadhav, Bin Hu, Zhongde Ye, Khushboo Sheth, Xuanying Li, William J. Greenleaf, Cornelia M. Weyand, and Jörg J. Goronzy
- Subjects
CD4-Positive T-Lymphocytes ,Medicine (General) ,PsA, psoriatic arthritis ,TF, transcription factor ,vst, variance stabilized transformation) ,RA, rheumatoid arthritis ,ATAC-seq, assay for transposase-accessible chromatin using sequencing ,Regulatory Sequences, Nucleic Acid ,General Biochemistry, Genetics and Molecular Biology ,Arthritis, Rheumatoid ,Epigenome ,R5-920 ,CDAI, clinical disease activity index ,SNP, single nucleotide polymorphisms ,HC, healthy individuals ,Humans ,Rheumatoid arthritis ,GREAT, genomic regions enrichment of annotations tool ,MTX, methotrexate ,GO, gene ontology ,DA, differentially accessible ,PBMCs, peripheral blood mononuclear cells ,Chromatin accessibility ,EM, effector memory ,PCA, principal component analysis ,General Medicine ,Articles ,DNA Methylation ,CM, central memory ,FACS, fluorescence activated cell sorting ,TFBS, transcription factor binding site ,SRA, sequence read archive ,Chromatin ,Super-enhancer ,CRP, C-reactive protein ,Medicine ,qPCR, quantitative polymerase chain reaction ,UMAP, uniform manifold approximation and projection ,Susceptibility loci - Abstract
Summary: Background: Rheumatoid arthritis (RA) is an inflammatory disease that manifests as a preclinical stage of systemic autoimmunity followed by chronic progressive synovitis. Disease-associated genetic SNP variants predominantly map to non-coding, regulatory regions of functional importance in CD4 T cells, implicating these cells as key regulators. A better understanding of the epigenome of CD4 T cells holds the promise of providing information on the interaction between genetic susceptibility and exogenous factors. Methods: We mapped regions of chromatin accessibility using ATAC-seq in peripheral CD4 T cell subsets of patients with RA (n=18) and compared them to T cells from patients with psoriatic arthritis (n=11) and age-matched healthy controls (n=10). Transcripts of selected genes were quantified using qPCR. Findings: RA-associated epigenetic signatures were identified that in part overlapped between central and effector memory CD4 T cells and that were to a lesser extent already present in naïve cells. Sites more accessible in RA were highly enriched for the motif of the transcription factor (TF) CTCF suggesting differences in the three-dimensional chromatin structure. Unexpectedly, sites with reduced chromatin accessibility were enriched for motifs of TFs pertinent for T cell function. Most strikingly, super-enhancers encompassing RA-associated SNPs were less accessible. Analysis of selected transcripts and published DNA methylation patterns were consistent with this finding. The preferential loss in accessibility at these super-enhancers was seen in patients with high and low disease activity and on a variety of immunosuppressive treatment modalities. Interpretation: Disease-associated genes are epigenetically less poised to respond in CD4 T cells from patients with established RA. Funding: This work was supported by I01 BX001669 from the Veterans Administration.
- Published
- 2021
15. Dynamic changes in chromatin accessibility are associated with the atherogenic transitioning of vascular smooth muscle cells
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Xiangyu Gao, Jianqin Ye, Elsie Gyang Ross, Simon Koplev, Clint L. Miller, Johan L.M. Björkegren, Gerard Pasterkamp, Tom Alsaigh, Adam W. Turner, Lingfeng Luo, Ying Wang, Zhongde Ye, Shaunak S Adkar, Michal Mokry, Fudi Wang, Nicholas J. Leeper, Hua Gao, Maria Elishaev, and Lars Maegdefessel
- Subjects
Inflammation ,ATF3 ,Vascular smooth muscle ,Activating Transcription Factor 3 ,Physiology ,Myocytes, Smooth Muscle ,Activating transcription factor ,Regulator ,Biology ,Atherosclerosis ,Muscle, Smooth, Vascular ,Chromatin ,Cell biology ,Complement system ,Mice ,Physiology (medical) ,medicine ,Humans ,Animals ,Original Article ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,Transcription factor - Abstract
Aims De-differentiation and activation of pro-inflammatory pathways are key transitions vascular smooth muscle cells (SMCs) make during atherogenesis. Here, we explored the upstream regulators of this 'atherogenic transition'. Methods and results Genome-wide sequencing studies, including ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) and RNA-seq, were performed on cells isolated from both murine SMC-lineage tracing models of atherosclerosis and human atherosclerotic lesions. At the bulk level, alterations in chromatin accessibility were associated with the atherogenic transitioning of lesional SMCs, especially in relation to genes that govern differentiation status and complement-dependent inflammation. Using computational biology, we observed that a transcription factor previously related to coronary artery disease, ATF3 (Activating transcription factor 3), was predicted to be an upstream regulator of genes altered during the transition. At the single-cell level, our results indicated that ATF3 is a key repressor of SMC transitioning towards the subset of cells that promote vascular inflammation by activating the complement cascade. The expression of ATF3 and complement component C3 were negatively correlated in SMCs from human atherosclerotic lesions, suggesting translational relevance. Phenome-wide association studies indicated that genetic variation that results in reduced expression of ATF3 is correlated with an increased risk for atherosclerosis, and the expression of ATF3 was significantly downregulated in humans with advanced vascular disease. Conclusion Our study indicates that the plasticity of atherosclerotic SMCs may in part be explained by dynamic changes in their chromatin architecture, which in turn may contribute to their maladaptive response to inflammation-induced stress. Translational perspective The recent CANTOS and COLCOT trials have shown that targeting inflammatory pathways lowers the risk of major adverse cardiovascular events. However, more specific targets are needed to avoid immunosuppressive side effects. Our data identify an upstream regulator of pro-inflammatory SMCs, ATF3, which is involved in the initial atherogenic transitioning of lesional SMCs. Restoring ATF3 activity may prevent the de-differentiation of SMCs and offer a novel translational approach for the suppression of complement-dependent inflammation in atherosclerotic lesions.
- Published
- 2021
16. Histone deficiency and accelerated replication stress in T cell aging
- Author
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Rohit R. Jadhav, Lu Tian, Bin Hu, Wenqiang Cao, Claire E. Gustafson, Chulwoo Kim, Jörg J. Goronzy, Jun Jin, Cornelia M. Weyand, and Zhongde Ye
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Male ,T cell ,T-Lymphocytes ,Histones ,Immune system ,Sirtuin 1 ,microRNA ,medicine ,Gene silencing ,Animals ,Humans ,Cellular Senescence ,Mice, Knockout ,biology ,SARS-CoV-2 ,COVID-19 ,General Medicine ,Cell cycle ,Acquired immune system ,MicroRNAs ,Histone ,medicine.anatomical_structure ,Acetylation ,biology.protein ,Cancer research ,Female ,Research Article - Abstract
With increasing age, individuals are more vulnerable to viral infections such as with influenza or the SARS-CoV-2 virus. One age-associated defect in human T cells is the reduced expression of miR-181a. miR-181ab1 deficiency in peripheral murine T cells causes delayed viral clearance after infection, resembling human immune aging. Here we show that naive T cells from older individuals as well as miR-181ab1-deficient murine T cells develop excessive replication stress after activation, due to reduced histone expression and delayed S-phase cell cycle progression. Reduced histone expression was caused by the miR-181a target SIRT1 that directly repressed transcription of histone genes by binding to their promoters and reducing histone acetylation. Inhibition of SIRT1 activity or SIRT1 silencing increased histone expression, restored cell cycle progression, diminished the replication-stress response, and reduced the production of inflammatory mediators in replicating T cells from old individuals. Correspondingly, treatment with SIRT1 inhibitors improved viral clearance in mice with miR-181a-deficient T cells after LCMV infection. In conclusion, SIRT1 inhibition may be beneficial to treat systemic viral infection in older individuals by targeting antigen-specific T cells that develop replication stress due to miR-181a deficiency.
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- 2020
17. The GSK3β-β-catenin-TCF1 pathway improves naive T cell activation in old adults by upregulating miR-181a
- Author
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Zhongde Ye, Cornelia M. Weyand, Jun Jin, Timothy M. Gould, Jörg J. Goronzy, and Huimin Zhang
- Subjects
0301 basic medicine ,Aging ,biology ,Naive T cell ,T cell ,T-cell receptor ,RC952-954.6 ,DUSP6 ,Article ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Downregulation and upregulation ,Geriatrics ,Catenin ,microRNA ,biology.protein ,Transcriptional regulation ,medicine ,Geriatrics and Gerontology ,Transcription ,030215 immunology ,Cell signalling - Abstract
MicroRNAs play an important role in the regulation of T cell development, activation, and differentiation. One of the most abundant microRNAs in lymphocytes is miR-181a, which controls T cell receptor (TCR) activation thresholds in thymic selection as well as in peripheral T cell responses. We previously found that miR-181a levels decline in T cells in the elderly. In this study, we identified TCF1 as a transcriptional regulator of pri-miR-181a. A decline in TCF1 levels in old individuals accounted for the reduced miR-181a expression impairing TCR signaling. Inhibition of GSK3ß restored expression of miR-181a by inducing TCF1 in T cells from old adults. GSK3ß inhibition enhanced TCR signaling to increase downstream expression of activation markers and production of IL-2. The effect involved the upregulation of miR-181a and the inhibition of DUSP6 expression. Thus, inhibition of GSK3ß can restore responses of old T cells by inducing miR-181a expression through TCF1.
- Published
- 2020
18. Transcription factor networks in aged naïve CD4 T cells bias lineage differentiation
- Author
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Jörg J. Goronzy, Guangjin Li, Claire E. Gustafson, Zhongde Ye, Cornelia M. Weyand, Lu Tian, and Bin Hu
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CD4-Positive T-Lymphocytes ,Male ,0301 basic medicine ,Aging ,Blood Donors ,0302 clinical medicine ,Transcription (biology) ,BATF ,transforming growth factor β ,immunosenescence ,Aged, 80 and over ,education.field_of_study ,Cell Differentiation ,T-Lymphocytes, Helper-Inducer ,Middle Aged ,BCL6 ,Healthy Volunteers ,Neoplasm Proteins ,Cell biology ,Basic-Leucine Zipper Transcription Factors ,Interferon Regulatory Factors ,Proto-Oncogene Proteins c-bcl-6 ,Original Article ,Female ,Proteoglycans ,Adult ,Population ,Receptors, Antigen, T-Cell ,Biology ,Transfection ,Young Adult ,03 medical and health sciences ,Downregulation and upregulation ,Proto-Oncogene Proteins ,Humans ,Interleukin 9 ,education ,Transcription factor ,Aged ,Interleukin-9 ,Original Articles ,Cell Biology ,multipotency ,HEK293 Cells ,030104 developmental biology ,interleukin 9 ,Trans-Activators ,Inhibitor of Differentiation Proteins ,T‐cell lineage differentiation ,Receptors, Transforming Growth Factor beta ,030217 neurology & neurosurgery ,Transforming growth factor - Abstract
With reduced thymic activity, the population of naïve T cells in humans is maintained by homeostatic proliferation throughout adult life. In young adults, naïve CD4 T cells have enormous proliferative potential and plasticity to differentiate into different lineages. Here, we explored whether naïve CD4 T‐cell aging is associated with a partial loss of this unbiased multipotency. We find that naïve CD4 T cells from older individuals have developed a propensity to develop into TH9 cells. Two major mechanisms contribute to this predisposition. First, responsiveness to transforming growth factor β (TGFβ) stimulation is enhanced with age due to an upregulation of the TGFβR3 receptor that results in increased expression of the transcription factor PU.1. Secondly, aged naïve CD4 T cells display altered transcription factor profiles in response to T‐cell receptor stimulation, including enhanced expression of BATF and IRF4 and reduced expression of ID3 and BCL6. These transcription factors are involved in TH9 differentiation as well as IL9 transcription suggesting that the aging‐associated changes in the transcription factor profile favor TH9 commitment.
- Published
- 2019
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19. Reduced CD146 expression promotes tumorigenesis and cancer stemness in colorectal cancer through activating Wnt/β-catenin signaling
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Xiyun Yan, Hongxia Duan, Jing Feng, Lei Du, Quan Chen, Yili Yang, Tao Tu, Dong Chen, Dan Liu, and Zhongde Ye
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0301 basic medicine ,Adult ,Male ,Colorectal cancer ,Active Transport, Cell Nucleus ,colorectal cancer ,CD146 Antigen ,Mice, SCID ,medicine.disease_cause ,03 medical and health sciences ,stemness ,Glycogen Synthase Kinase 3 ,Mice ,Cancer stem cell ,Mice, Inbred NOD ,Cell Line, Tumor ,medicine ,Biomarkers, Tumor ,Animals ,Humans ,RNA, Small Interfering ,Wnt Signaling Pathway ,Oligonucleotide Array Sequence Analysis ,Wnt/β-catenin ,business.industry ,Wnt signaling pathway ,Cancer ,Middle Aged ,medicine.disease ,Gene Expression Regulation, Neoplastic ,tumorigenesis ,030104 developmental biology ,Phenotype ,Oncology ,Tumor progression ,CD146 ,Immunology ,Cancer cell ,Cancer research ,Disease Progression ,Neoplastic Stem Cells ,Female ,Stem cell ,business ,Carcinogenesis ,Colorectal Neoplasms ,Neoplasm Transplantation ,Research Paper - Abstract
// Dan Liu 1, 5 , Lei Du 2 , Dong Chen 3 , Zhongde Ye 1 , Hongxia Duan 1 , Tao Tu 1 , Jing Feng 1 , Yili Yang 4 , Quan Chen 2 , Xiyun Yan 1 1 Key Laboratory of Protein and Peptide Pharmaceuticals, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2 State Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China 3 Department of Pathology, Beijing Anzhen Hospital, Capital Medical University, Beijing 100029, China 4 Department of Colorectal Surgery, Xinhua Hospital, Shanghai Jiaotong University School of Medicine, Shanghai 200092, China 5 College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China Correspondence to: Xiyun Yan, email: yanxy@ibp.ac.cn Keywords: stemness, CD146, tumorigenesis, Wnt/β-catenin, colorectal cancer Received: September 09, 2015 Accepted: April 18, 2016 Published: June 09, 2016 ABSTRACT Cancer stemness drives tumor progression and drug resistance, representing a challenge to cancer eradication. Compelling evidence indicates that cancer cells can reenter the stem cell state due to the reprogramming of self-renewal machinery. Here, we show that CD146 knockdown induces stem cell properties in colorectal cancer (CRC) cells through activating canonical Wnt signaling. shRNA-mediated CD146 knockdown in CRC cells facilitates tumor initiation in serial xenotransplantation experiments. Moreover, upon CD146 knockdown, CRC cells show elevated expression of specific cancer stem cell (CSC) markers, increased sphere and clone formation as well as drug resistance in vitro . Mechanistically, our findings provide evidence that CD146 expression negatively correlates with canonical Wnt/β-catenin activity in CRC cell lines and primary CRC specimens. Knockdown of CD146 results in inhibition of NF-κB/p65-initiated GSK-3β expression, subsequently promoting nuclear translocation and activation of β-catenin, and as a consequence restoring stem cell phenotypes in differentiated CRC cells. Together, our data strongly suggest that CD146 functions as a suppressor of tumorigenesis and cancer stemness in CRC through inactivating the canonical Wnt/β-catenin cascade. Our findings provide important insights into stem cell plasticity and the multifunctional role of CD146 in CRC progression.
- Published
- 2016
20. Expression of CD39 on Activated T Cells Impairs their Survival in Older Individuals
- Author
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Sabine Le Saux, Emerson Turgano, Jessica Hutter Saunders, Lu Tian, William Sultan, Fengqin Fang, Cornelia M. Weyand, Mingcan Yu, Jörg J. Goronzy, Mary M. Cavanagh, Zhongde Ye, Cornelia L. Dekker, and Qian Qi
- Subjects
Adult ,CD4-Positive T-Lymphocytes ,0301 basic medicine ,Aging ,Cell Survival ,ATPase ,T cell ,Apoptosis ,Lymphocyte Activation ,Article ,General Biochemistry, Genetics and Molecular Biology ,Young Adult ,03 medical and health sciences ,Immune system ,Antigen ,Antigens, CD ,Stress, Physiological ,Memory cell ,medicine ,Humans ,lcsh:QH301-705.5 ,Aged ,Cell Proliferation ,Adenosine Triphosphatases ,Aged, 80 and over ,biology ,Cell growth ,Effector ,Apyrase ,Middle Aged ,Clone Cells ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Biology (General) ,Immunology ,biology.protein - Abstract
SUMMARY In an immune response, CD4+ T cells expand into effector T cells and then contract to survive as long-lived memory cells. To identify age-associated defects in memory cell formation, we profiled activated CD4+ T cells and found an increased induction of the ATPase CD39 with age. CD39+ CD4+ T cells resembled effector T cells with signs of metabolic stress and high susceptibility to undergo apoptosis. Pharmacological inhibition of ATPase activity dampened effector cell differentiation and improved survival, suggesting that CD39 activity influences T cell fate. Individuals carrying a low-expressing CD39 variant responded better to vaccination with an increase in vaccine-specific memory T cells. Increased inducibility of CD39 after activation may contribute to the impaired vaccine response with age., Graphical abstract
- Published
- 2016
21. CD146 acts as a novel receptor for netrin-1 in promoting angiogenesis and vascular development
- Author
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Ruirui Kong, Yongting Luo, Jing Feng, Zhongde Ye, Xiyun Yan, Chunxia Zhang, H. Yan, Jianan Chen, Pushuai Wen, Tao Tu, Jane Y. Wu, and Feng Liu
- Subjects
animal structures ,Angiogenesis ,Neovascularization, Physiologic ,Biology ,vascular development ,Neovascularization ,angiogenesis ,Conditional gene knockout ,Netrin ,medicine ,Animals ,Humans ,Nerve Growth Factors ,Receptor ,Molecular Biology ,Tumor Suppressor Proteins ,fungi ,Kinase insert domain receptor ,Cell Biology ,Cell biology ,Endothelial stem cell ,nervous system ,CD146 ,embryonic structures ,netrin-1 ,Original Article ,medicine.symptom - Abstract
Angiogenesis, a process that newly-formed blood vessels sprout from pre-existing ones, is vital for vertebrate development and adult homeostasis. Previous studies have demonstrated that the neuronal guidance molecule netrin-1 participates in angiogenesis and morphogenesis of the vascular system. Netrin-1 exhibits dual activities in angiogenesis: either promoting or inhibiting angiogenesis. The anti-angiogenic activity of netrin-1 is mediated by UNC5B receptor. However, how netrin-1 promotes angiogenesis remained unclear. Here we report that CD146, an endothelial transmembrane protein of the immunoglobulin superfamily, is a receptor for netrin-1. Netrin-1 binds to CD146 with high affinity, inducing endothelial cell activation and downstream signaling in a CD146-dependent manner. Conditional knockout of the cd146 gene in the murine endothelium or disruption of netrin-CD146 interaction by a specific anti-CD146 antibody blocks or reduces netrin-1-induced angiogenesis. In zebrafish embryos, downregulating either netrin-1a or CD146 results in vascular defects with striking similarity. Moreover, knocking down CD146 blocks ectopic vascular sprouting induced by netrin-1 overexpression. Together, our data uncover CD146 as a previously unknown receptor for netrin-1 and also reveal a functional ligand for CD146 in angiogenesis, demonstrating the involvement of netrin-CD146 signaling in angiogenesis during vertebrate development.
- Published
- 2015
22. Quantitative proteomics reveals ER-α involvement in CD146-induced epithelial-mesenchymal transition in breast cancer cells
- Author
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Qiqun Zeng, Lina Song, Peng Zhang, Peng Xue, Zhenzhen Wu, Jing Feng, Zechi Huang, Xinlei Zhang, Xiyun Yan, Taijiao Jiang, Dongling Yang, Zhongde Ye, and Di Lu
- Subjects
Epithelial-Mesenchymal Transition ,Cell adhesion molecule ,Estrogen Receptor alpha ,Biophysics ,Estrogen receptor ,Triple Negative Breast Neoplasms ,CD146 Antigen ,Biology ,Bioinformatics ,Proteomics ,Biochemistry ,Cell biology ,Cell Line, Tumor ,Isotope Labeling ,Stable isotope labeling by amino acids in cell culture ,embryonic structures ,Humans ,CD146 ,Female ,RNA, Messenger ,Epithelial–mesenchymal transition ,Estrogen receptor alpha ,Triple-negative breast cancer - Abstract
The cell adhesion molecule CD146 is a novel inducer of epithelial–mesenchymal transition (EMT), which was associated with triple-negative breast cancer (TNBC). To gain insights into the complex networks that mediate CD146-induced EMT in breast cancers, we conducted a triple Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC), to analyze whole cell protein profiles of MCF-7 cells that had undergone gradual EMT upon CD146 expression from moderate to high levels. In this study, we identified 2293 proteins in total, of which 103 exhibited changes in protein abundance that correlated with CD146 expression levels, revealing extensive morphological and biochemical changes associated with EMT. Ingenuity Pathway Analysis (IPA) showed that estrogen receptor (ER) was the most significantly inhibited transcription regulator during CD146-induced EMT. Functional assays further revealed that ER-α expression was repressed in cells undergoing CD146-induced EMT, whereas re-expression of ER-α abolished their migratory and invasive behavior. Lastly, we found that ER-α mediated its effects on CD146-induced EMT via repression of the key EMT transcriptional factor Slug. Our study revealed the molecular details of the complex signaling networks during CD146-induced EMT, and provided important clues for future exploration of the mechanisms underlying the association between CD146 and TNBC as observed in the clinic. Biological significance This study used a proteomics screen to reveal molecular changes mediated by CD146-induced epithelial–mesenchymal transition (EMT) in breast cancer cells. Estrogen receptor (ER) was found to be the most significantly inhibited transcription regulator, which mediated its effects on CD146-induced EMT via repression of the transcriptional factor Slug. Elucidation of protein interaction networks and signal networks generated from 103 significantly changed proteins would facilitate future investigation into the mechanisms underlying CD146 induced-EMT in breast cancers.
- Published
- 2014
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- View/download PDF
23. Epigenomics of human CD8 T cell differentiation and aging
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David Moskowitz, William J. Greenleaf, Cornelia M. Weyand, Bin Hu, David W. Zhang, Zhongde Ye, Jason D. Buenrostro, Jörg J. Goronzy, Sabine Le Saux, and Rolando E. Yanes
- Subjects
0301 basic medicine ,Regulation of gene expression ,Immunology ,Respiratory chain ,General Medicine ,Biology ,Acquired immune system ,Article ,Chromatin ,03 medical and health sciences ,030104 developmental biology ,Immune system ,BATF ,Cytotoxic T cell ,Transcription factor - Abstract
The efficacy of the adaptive immune response declines dramatically with age, but the cell-intrinsic mechanisms driving immune aging in humans remain poorly understood. Immune aging is characterized by a loss of self-renewing naïve cells and the accumulation of differentiated but dysfunctional cells within the CD8 T cell compartment. Using ATAC-seq, we inferred the transcription factor binding activities correlated with naive and central and effector memory CD8 T cell states in young adults. Integrating our results with RNA-seq, we identified transcription networks associated with CD8 T cell differentiation, with prominent roles implicated for BATF, ETS1, Eomes, and Sp1. Extending our analysis to aged humans, we found that the differences between the memory and naive subsets were largely preserved across age, but that naive and central memory cells from older individuals exhibited a shift toward more differentiated patterns of chromatin openness. Additionally, aged naive cells displayed a loss in chromatin accessibility at gene promoters, largely associated with a decrease in NRF1 binding. This shift was implicated in a marked drop-off in the ability of the aged naive cells to transcribe respiratory chain genes, which may explain the reduced capacity of oxidative phosphorylation in older naïve cells. Our findings identify BATF- and NRF1-driven gene regulation as potential targets for delaying CD8 T cell aging and restoring function.
- Published
- 2017
- Full Text
- View/download PDF
24. A SARS-CoV protein, ORF-6, induces caspase-3 mediated, ER stress and JNK-dependent apoptosis
- Author
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Zhongde Ye, Yong Xie, Chung Kai Wong, and Peng Li
- Subjects
viruses ,Biophysics ,Apoptosis ,Caspase 3 ,Biology ,Endoplasmic Reticulum ,medicine.disease_cause ,Biochemistry ,Article ,Viral Matrix Proteins ,Pathogenesis ,Viral Proteins ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,HSP70 Heat-Shock Proteins ,ORFS ,Respiratory system ,Molecular Biology ,c-Jun N-terminal kinase ,Coronavirus ,JNK Mitogen-Activated Protein Kinases ,Membrane Proteins ,Severe acute respiratory syndrome coronavirus ,Caspase ,Virology ,ORF-6 ,Up-Regulation ,Enzyme Activation ,Open reading frame ,Unfolded protein response ,ER stress ,Oligopeptides ,Molecular Chaperones - Abstract
Severe acute respiratory syndrome (SARS) coronavirus (CoV) spread from China to more than 30 countries, causing severe outbreaks of atypical pneumonia and over 800 deaths worldwide. CoV primarily infects the upper respiratory and gastrointestinal tract; however, SARS-CoV has a unique pathogenesis because it infects both the upper and lower respiratory tracts and leads to human respiratory diseases. SARS-CoV genome has shown containing 14 open reading frames (ORFs) and 8 of them encode novel proteins. Previous reports show that overexpression of ORF-3a, ORF-3b and ORF-7a induce apoptosis. In this report, we demonstrate that overexpression of ORF-6 also induces apoptosis and that Caspase-3 inhibitor and JNK inhibitor block ORF-6 induced apoptosis. Importantly, the protein level of ER chaperon protein, GRP94, was up-regulated when ORF-6 was overexpressed. All these data suggest that ORF-6 induces apoptosis via Caspase-3 mediated, ER stress and JNK-dependent pathways.
- Published
- 2008
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25. Salmonella Effector AvrA Regulation of Colonic Epithelial Cell Inflammation by Deubiquitination
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Jun Sun, David L. Boone, Elaine O. Petrof, Erika C. Claud, and Zhongde Ye
- Subjects
Beta-catenin ,Colon ,Apoptosis ,Cell Line ,Pathology and Forensic Medicine ,Deubiquitinating enzyme ,Proto-Oncogene Proteins c-myc ,Mice ,Bacterial Proteins ,NF-KappaB Inhibitor alpha ,Ubiquitin ,Cyclin D ,Cyclins ,Animals ,Humans ,beta Catenin ,Inflammation ,Salmonella Infections, Animal ,biology ,Effector ,NF-kappa B ,Epithelial Cells ,NFKB1 ,Virology ,Cell biology ,Mice, Inbred C57BL ,IκBα ,Cell culture ,biology.protein ,Female ,I-kappa B Proteins ,Signal transduction ,Regular Articles ,Signal Transduction - Abstract
AvrA is a newly described bacterial effector existing in Salmonella. Here, we test the hypothesis that AvrA is a deubiquitinase that removes ubiquitin from two inhibitors of the nuclear factor-kappaB (NF-kappaB) pathway, IkappaBalpha and beta-catenin, thereby inhibiting the inflammatory responses of the host. The role of AvrA was assessed in intestinal epithelial cell models and in mouse models infected with AvrA-deficient and -sufficient Salmonella strains. We also purified AvrA and AvrA mutant proteins and characterized their deubiquitinase activity in a cell-free system. We investigated target gene and inflammatory cytokine expression, as well as effects on epithelial cell proliferation and apoptosis induced by AvrA-deficient and -sufficient bacterial strains in vivo. Our results show that AvrA blocks degradation of IkappaBalpha and beta-catenin in epithelial cells. AvrA deubiquitinates IkappaBalpha, which blocks its degradation and leads to the inhibition of NF-kappaB activation. Target genes of the NF-kappaB pathway, such as interleukin-6, were correspondingly down-regulated during bacterial infection with Salmonella expressing AvrA. AvrA also deubiquitinates and thus blocks degradation of beta-catenin. Target genes of the beta-catenin pathway, such as c-myc and cyclinD1, were correspondingly up-regulated with AvrA expression. Increased beta-catenin further negatively regulates the NF-kappaB pathway. Our findings suggest an important role for AvrA in regulating host inflammatory responses through NF-kappaB and beta-catenin pathways.
- Published
- 2007
- Full Text
- View/download PDF
26. β-Catenin activity negatively regulates bacteria-induced inflammation
- Author
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Anne P. Liao, Zhongde Ye, Sumalatha Kuppireddi, Jun Sun, Yingli Duan, and Mae J. Ciancio
- Subjects
Salmonella typhimurium ,Salmonella ,Inflammation ,medicine.disease_cause ,Pathology and Forensic Medicine ,Proto-Oncogene Proteins c-myc ,Glycogen Synthase Kinase 3 ,Mice ,GSK-3 ,medicine ,Animals ,Secretion ,RNA, Small Interfering ,Kinase activity ,Molecular Biology ,beta Catenin ,biology ,Interleukin-6 ,Tumor Necrosis Factor-alpha ,NF-kappa B ,Gene Expression Regulation, Bacterial ,Cell Biology ,Molecular biology ,I-kappa B Kinase ,Ubiquitin ligase ,Mice, Inbred C57BL ,Biochemistry ,Salmonella Infections ,biology.protein ,Phosphorylation ,Female ,medicine.symptom ,Signal transduction - Abstract
Wild-type (WT) Salmonella typhimurium causes acute intestinal inflammation by activating the nuclear factor kappa B (NF-kappaB) pathway. Interestingly, WT Salmonella infection also causes degradation of beta-catenin, a regulator of cellular proliferation. Regulation of beta-catenin and the inhibitor of NF-kappaB, IkappaBalpha, is strikingly similar, involving phosphorylation at identical sites, ubiquitination by the same E3 ligase, and subsequent proteasomal degradation. However, how beta-catenin directly regulates the NF-kappaB pathway during bacteria-induced inflammation in vivo is unknown. Using streptomycin-pretreated mice challenged with Salmonella, we demonstrated that WT Salmonella stimulated beta-catenin degradation and decreased the physical association between NF-kappaB and beta-catenin. Accordingly, WT Salmonella infection decreased the expression of c-myc, a beta-catenin-regulated target gene, and increased the levels of IL-6 and TNF-alpha, the NF-kappaB-regulated target genes. Bacterial infection directly stimulated phosphorylation of beta-catenin, both in vivo and in vitro. Closer examination revealed that glycogen synthase kinase 3beta (GSK-3beta) kinase activity was increased in response to WT Salmonella, whereas non-virulent Salmonella had no effect. siRNA of GSK-3beta was able to stabilize IkappaBalpha in response to WT Salmonella. Pretreatment for 24 h with LiCl, an inhibitor of GSK-3beta, reduced WT Salmonella induced IL-8 secretion. Additionally, cells expressing constitutively active beta-catenin showed IkappaBalpha stabilization and inhibition of NF-kappaB activity not only after WT Salmonella infection but also after commensal bacteria (Escherichia coli F18) and TNF-alpha treatment. This study suggests a new role for beta-catenin as a negative regulator of inflammation.
- Published
- 2007
- Full Text
- View/download PDF
27. Wnt5a uses CD146 as a receptor to regulate cell motility and convergent extension
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Dongling Yang, Di Lu, Min Sun, Xiyun Yan, Feng Liu, Dan Liu, Tao Tu, Chunxia Zhang, Zhongde Ye, and Jing Feng
- Subjects
Dishevelled Proteins ,General Physics and Astronomy ,Motility ,Wnt signalling ,CD146 Antigen ,Biology ,Wnt-5a Protein ,General Biochemistry, Genetics and Molecular Biology ,Cell Movement ,Proto-Oncogene Proteins ,Human Umbilical Vein Endothelial Cells ,Animals ,Humans ,Receptor ,Wnt Signaling Pathway ,Zebrafish ,beta Catenin ,Adaptor Proteins, Signal Transducing ,Multidisciplinary ,Convergent extension ,Gastrulation ,Embryogenesis ,JNK Mitogen-Activated Protein Kinases ,Cell Polarity ,Cell migration ,General Chemistry ,Phosphoproteins ,Cell biology ,Wnt Proteins ,WNT5A ,HEK293 Cells ,CD146 ,HT29 Cells - Abstract
Dysregulation of Wnt signalling leads to developmental defects and diseases. Non-canonical Wnt signalling via planar cell polarity proteins regulates cell migration and convergent extension; however, the underlying mechanisms are poorly understood. Here we report that Wnt5a uses CD146 as a receptor to regulate cell migration and zebrafish embryonic convergent extension. CD146 binds to Wnt5a with the high affinity required for Wnt5a-induced activation of Dishevelled (Dvl) and c-jun amino-terminal kinase (JNK). The interaction between CD146 and Dvl2 is enhanced on Wnt5a treatment. Mutation of the Dvl2-binding region impairs its ability to activate JNK, promote cell migration and facilitate the formation of cell protrusions. Knockdown of Dvls impairs CD146-induced cell migration. Interestingly, CD146 inhibits canonical Wnt signalling by promoting β-catenin degradation. Our results suggest a model in which CD146 acts as a functional Wnt5a receptor in regulating cell migration and convergent extension, turning off the canonical Wnt signalling branch.
- Published
- 2013
- Full Text
- View/download PDF
28. RNF13, a RING finger protein, mediates endoplasmic reticulum stress-induced apoptosis through the inositol-requiring enzyme (IRE1α)/c-Jun NH2-terminal kinase pathway
- Author
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Xiaofeng Gu, Chung Kai Wong, Yi Zhang, Linkang Zhou, Wan Ping Bay, Peng Li, Victor C. Yu, De Li, Yang Liu, Zhongde Ye, and Muhammad Arshad
- Subjects
Cell signaling ,RNA Splicing ,Ubiquitin-Protein Ligases ,Apoptosis ,Regulatory Factor X Transcription Factors ,Biology ,Protein Serine-Threonine Kinases ,Endoplasmic Reticulum ,Biochemistry ,Cell Line ,Chlorocebus aethiops ,Endoribonucleases ,medicine ,Staurosporine ,Animals ,Humans ,RNA, Messenger ,Phosphorylation ,Molecular Biology ,Transcription factor ,Endoplasmic reticulum ,JNK Mitogen-Activated Protein Kinases ,Cell Biology ,Endoplasmic Reticulum Stress ,Cell biology ,DNA-Binding Proteins ,Enzyme Activation ,Unfolded protein response ,Apoptotic signaling pathway ,Signal transduction ,Apoptosis Regulatory Proteins ,RING Finger Domains ,Protein Processing, Post-Translational ,medicine.drug ,Protein Binding ,Signal Transduction ,Transcription Factors - Abstract
Disturbance of homeostasis at endoplasmic reticulum (ER) causes stress to cells that in turn triggers an adaptive signaling pathway termed unfolded protein response for the purpose of restoring normal cellular physiology or initiating signaling events leading to apoptosis. Identification of those genes that are involved in the unfolded protein response-mediated apoptotic signaling pathway would be valuable toward elucidating the molecular mechanism underlying the relationship between ER stress and apoptosis. We initiated a genetic screen by using the retroviral insertion mutation system to search for genes whose inactivation confers resistance to apoptosis induction by staurosporine. Using this approach, RING finger protein 13 (RNF13) was identified. Interestingly, RNF13 is highly enriched in ER. RNF13 knockdown cells are resistant to apoptosis and JNK activation triggered by ER stress. Conversely, overexpression of RNF13 induces JNK activation and caspase-dependent apoptosis. The RING and transmembrane domains of RNF13 are both required for its effects on JNK activation and apoptosis. Moreover, systematic analysis of the involvement of individual signaling components in the ER stress pathway using knockdown approach reveals that RNF13 acts upstream of the IRE1α-TRAF2 signaling axis for JNK activation and apoptosis. Finally, RNF13 co-immunoprecipitates with IRE1α, and the intact RING domain is also required for mediating its interaction. Together, our data support a model that RNF13 is a critical mediator for facilitating ER stress-induced apoptosis through the activation of the IRE1α-TRAF2-JNK signaling pathway.
- Published
- 2013
29. CD146 is a coreceptor for VEGFR-2 in tumor angiogenesis
- Author
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H. Yan, Di Lu, Jing Feng, Kelong Fan, Qiqun Zeng, Hongxia Duan, Jie Zhuang, Dongling Yang, Zhongde Ye, Xiyun Yan, Tian-Xia Jiang, Yongting Luo, and Junfeng Hao
- Subjects
Angiogenesis ,Immunology ,Mice, Nude ,Antineoplastic Agents ,CD146 Antigen ,Biology ,Biochemistry ,Mice ,In vivo ,Cell Line, Tumor ,Conditional gene knockout ,Animals ,Humans ,Molecular Targeted Therapy ,Phosphorylation ,RNA, Small Interfering ,Protein kinase B ,Cells, Cultured ,Mice, Knockout ,Neovascularization, Pathologic ,Kinase insert domain receptor ,Cell Biology ,Hematology ,Vascular Endothelial Growth Factor Receptor-2 ,Recombinant Proteins ,Cell biology ,Specific Pathogen-Free Organisms ,Endothelial stem cell ,Vascular endothelial growth factor A ,CD146 ,Female ,Mutant Proteins ,RNA Interference ,Endothelium, Vascular ,Protein Processing, Post-Translational - Abstract
CD146 is a novel endothelial biomarker and plays an essential role in angiogenesis; however, its role in the molecular mechanism underlying angiogenesis remains poorly understood. In the present study, we show that CD146 interacts directly with VEGFR-2 on endothelial cells and at the molecular level and identify the structural basis of CD146 binding to VEGFR-2. In addition, we show that CD146 is required in VEGF-induced VEGFR-2 phosphorylation, AKT/p38 MAPKs/NF-κB activation, and thus promotion of endothelial cell migration and microvascular formation. Furthermore, we show that anti-CD146 AA98 or CD146 siRNA abrogates all VEGFR-2 activation induced by VEGF. An in vivo angiogenesis assay showed that VEGF-promoted microvascular formation was impaired in the endothelial conditional knockout of CD146 (CD146EC-KO). Our animal experiments demonstrated that anti-CD146 (AA98) and anti-VEGF (bevacizumab) have an additive inhibitory effect on xenografted human pancreatic and melanoma tumors. The results of the present study suggest that CD146 is a new coreceptor for VEGFR-2 and is therefore a promising target for blocking tumor-related angiogenesis.
- Published
- 2012
30. Salmonella typhimurium infection increases p53 acetylation in intestinal epithelial cells
- Author
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Yinglin Xia, Andrew M. Steiner, Jun Sun, Elaine O. Petrof, Erika C. Claud, Shaoping Wu, Yun Zhao, Zhongde Ye, and Xingyin Liu
- Subjects
Salmonella typhimurium ,Salmonella ,Physiology ,Gene Expression ,Inflammation ,Salmonella infection ,Biology ,medicine.disease_cause ,Inflammation/Immunity/Mediators ,Type three secretion system ,Microbiology ,Mice ,Intestinal mucosa ,Bacterial Proteins ,Physiology (medical) ,medicine ,Animals ,Humans ,Intestinal Mucosa ,Cells, Cultured ,Hepatology ,Effector ,Tumor Necrosis Factor-alpha ,Cell Cycle ,Gastroenterology ,Acetylation ,medicine.disease ,Intestinal epithelium ,Salmonella Infections ,Female ,medicine.symptom ,Signal transduction ,Tumor Suppressor Protein p53 ,HeLa Cells - Abstract
The ability of Salmonella typhimurium to enter intestinal epithelial cells constitutes a crucial step in pathogenesis. Salmonella invasion of the intestinal epithelium requires bacterial type three secretion system. Type three secretion system is a transport device that injects virulence proteins, called effectors, to paralyze or reprogram the eukaryotic cells. Avirulence factor for Salmonella (AvrA) is a Salmonella effector that inhibits the host's inflammatory responses. The mechanism by which AvrA modulates host cell signaling is not entirely clear. p53 is situated at the crossroads of a network of signaling pathways that are essential for genotoxic and nongenotoxic stress responses. We hypothesized that Salmonella infection activates the p53 pathway. We demonstrated that Salmonella infection increased p53 acetylation. Cells infected with AvrA-sufficient Salmonella have increased p53 acetylation, whereas cells infected with AvrA-deficient Salmonella have less p53 acetylation. In a cell-free system, AvrA possessed acetyltransferase activity and used p53 as a substrate. AvrA expression increased p53 transcriptional activity and induced cell cycle arrest. HCT116 p53−/− cells had less inflammatory responses. In a mouse model of Salmonella infection, intestinal epithelial p53 acetylation was increased by AvrA expression. Our studies provide novel mechanistic evidence that Salmonella modulates the p53 pathway during intestinal inflammation and infection.
- Published
- 2010
31. Beta‐catenin activity negatively regulates bacteria‐induced inflammation
- Author
-
Sumalatha Kupireddi, Anne P. Liao, Mae J. Ciancio, Jun Sun, Yingli Duan, and Zhongde Ye
- Subjects
Beta-catenin ,biology ,Chemistry ,Inflammation ,biology.organism_classification ,Biochemistry ,Cell biology ,Genetics ,medicine ,biology.protein ,medicine.symptom ,Molecular Biology ,Bacteria ,Biotechnology - Published
- 2007
- Full Text
- View/download PDF
32. Epigenomics of human CD8 T cell differentiation and aging.
- Author
-
Moskowitz, David M., Zhang, David W., Hu, Bin, Le Saux, Sabine, Yanes, Rolando E., Zhongde Ye, Buenrostro, Jason D., Weyand, Cornelia M., Greenleaf, William J., and Goronzy, Jörg J.
- Published
- 2017
- Full Text
- View/download PDF
33. 68 Bacterial Type Three Secretion Protein AvrA Increases p53 Acetylation in Intestinal Inflammation
- Author
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Elaine O. Petrof, Erika C. Claud, Shaoping Wu, Zhongde Ye, Yun Zhao, Yinglin Xia, Andrew M. Steiner, and Jun Sun
- Subjects
Hepatology ,Intestinal inflammation ,Chemistry ,Gastroenterology ,Secretion ,Microbiology ,P53 acetylation - Published
- 2009
- Full Text
- View/download PDF
34. RNF13, a RING Finger Protein, Mediates Endoplasmic Reticulum Stress-induced Apoptosis through the Inositol-requiring Enzyme (IRE1α)/c-Jun NH2-terminal Kinase Pathway.
- Author
-
Arshad, Muhammad, Zhongde Ye, Xiaofeng Gu, Chung Kai Wong, Yang Liu, De Li, Linkang Zhou, Yi Zhang, Wan Ping Bay, Yu, Victor C., and Peng Li
- Subjects
- *
HOMEOSTASIS , *ENDOPLASMIC reticulum , *APOPTOSIS , *STAUROSPORINE , *MEMBRANE proteins - Abstract
Disturbance of homeostasis at endoplasmic reticulum (ER) causes stress to cells that in turn triggers an adaptive signaling pathway termed unfolded protein response for the purpose of restoring normal cellular physiology or initiating signaling events leading to apoptosis. Identification of those genes that are involved in the unfolded protein response-mediated apoptotic signaling pathway would be valuable toward elucidating the molecular mechanism underlying the relationship between ER stress and apoptosis. We initiated a genetic screen by using the retroviral insertion mutation system to search for genes whose inactivation confers resistance to apoptosis induction by staurosporine. Using this approach, RING finger protein 13 (RNF13) was identified. Interestingly, RNF13 is highly enriched in ER. RNF13 knockdown cells are resistant to apoptosis and JNK activation triggered by ER stress. Conversely, overexpression of RNF13 induces JNK activation and caspase-dependent apoptosis. The RING and transmembrane domains of RNF13 are both required for its effects on JNK activation and apoptosis. Moreover, systematic analysis of the involvement of individual signaling components in the ER stress pathway using knockdown approach reveals that RNF13 acts upstream of the IRE1α- TRAF2 signaling axis for JNK activation and apoptosis. Finally, RNF13 co-immunoprecipitates with IRE1α, and the intact RING domain is also required for mediating its interaction. Together, our data support a model that RNF13 is a critical mediator for facilitating ER stress-induced apoptosis through the activation of the IRE1α-TRAF2-JNK signaling pathway. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
35. Salmonella typhimurium infection increases p53 acetylation in intestinal epithelial cells.
- Author
-
Shaoping Wu, Zhongde Ye, Xingyin Liu, Yun Zhao, Yinglin Xia, Steiner, Andrew, Petrof, Elaine O., Claud, Erika C., and Jun Sun
- Subjects
- *
SALMONELLA typhimurium , *SALMONELLA diseases , *EPITHELIAL cells , *VIRAL proteins , *EUKARYOTIC cells , *P53 protein , *ACETYLTRANSFERASES , *LABORATORY mice - Abstract
The ability of Salmonella typhimuriu,n to enter intestinal epithelial cells constitutes a crucial step in pathogenesis. Salmonella invasion of the intestinal epithelium requires bacterial type three secretion system. Type three secretion system is a transport device that injects virulence proteins, called effectors, to paralyze or reprogram the eukaryotic cells. Avirulence factor for Salmonella (AvrA) is a Salmonella effector that inhibits the host's inflammatory responses. The mechanism by which AvrA modulates host cell signaling is not entirely clear. p53 is situated at the crossroads of a network of signaling pathways that are essential for genotoxic and nongenotoxic stress responses. We hypothesized that Salmonella infection activates the p53 pathway. We demonstrated that Salmonella infection increased p53 acetylation. Cells infected with AvrA-sufficient Salmonella have increased p53 acetylation, whereas cells infected with AvrA-deficient Salmonella have less p53 acetylation. In a cell-free system, AvrA possessed acetyltransferase activity and used p53 as a substrate. AvrA expression increased p53 transcriptional activity and induced cell cycle arrest. HCT116 p53-/- cells had less inflammatory responses. In a mouse model of Salmnonella infection, intestinal epithelial p53 acetylation was increased by AvrA expression. Our studies provide novel mechanistic evidence that Sal,nonella modulates the p53 pathway during intestinal inflammation and infection. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
36. β-Catenin activity negatively regulates bacteria-induced inflammation.
- Author
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Yingli Duan, Liao, Anne P., Kuppireddi, Sumalatha, Zhongde Ye, Ciancio, Mae J., and Jun Sun
- Published
- 2007
- Full Text
- View/download PDF
37. Histone deficiency and accelerated replication stress in T cell aging.
- Author
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Chulwoo Kim, Jun Jin, Zhongde Ye, Jadhav, Rohit R., Gustafson, Claire E., Bin Hu, Wenqiang Cao, Lu Tian, Weyand, Cornelia M., Goronzy, Jörg J., Kim, Chulwoo, Jin, Jun, Ye, Zhongde, Hu, Bin, Cao, Wenqiang, and Tian, Lu
- Subjects
- *
T cells , *CELLULAR aging , *SARS-CoV-2 , *SIRTUINS , *INFLAMMATORY mediators - Abstract
With increasing age, individuals are more vulnerable to viral infections such as with influenza or the SARS-CoV-2 virus. One age-associated defect in human T cells is the reduced expression of miR-181a. miR-181ab1 deficiency in peripheral murine T cells causes delayed viral clearance after infection, resembling human immune aging. Here we show that naive T cells from older individuals as well as miR-181ab1-deficient murine T cells develop excessive replication stress after activation, due to reduced histone expression and delayed S-phase cell cycle progression. Reduced histone expression was caused by the miR-181a target SIRT1 that directly repressed transcription of histone genes by binding to their promoters and reducing histone acetylation. Inhibition of SIRT1 activity or SIRT1 silencing increased histone expression, restored cell cycle progression, diminished the replication-stress response, and reduced the production of inflammatory mediators in replicating T cells from old individuals. Correspondingly, treatment with SIRT1 inhibitors improved viral clearance in mice with miR-181a-deficient T cells after LCMV infection. In conclusion, SIRT1 inhibition may be beneficial to treat systemic viral infection in older individuals by targeting antigen-specific T cells that develop replication stress due to miR-181a deficiency. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
38. Beta-catenin activity negatively regulates bacteria-induced inflammation.
- Author
-
Jun Sun, Yingli Duan, Liao, Anne P., Kupireddi, Sumalatha, Zhongde Ye, and Ciancio, Mae J.
- Subjects
PROTEINS ,INFLAMMATORY bowel diseases ,SALMONELLA typhimurium ,SALMONELLA diseases ,NF-kappa B - Abstract
Wild-type (WT) Salmonella typhimurium cause acute intestinal inflammation by activating the NF-kappaB pathway. Interestingly, WT Salmonella infection also causes degradation of beta-catenin, the regulator of cell proliferation. Regulation of beta-catenin and the inhibitor of NF-kappa B, 1 kappa B alpha, are strikingly similar, involving phosphorylation at the same sites, ubiquitination by the same E3 ligase, and subsequent proteasomal degradation. However, how beta-catenin directly regulates the NF-kappa B pathway during bacteria-induced inflammation in vivo is unknown. Using streptomycin-pretreated mice challenged with Salmonella, we demonstrated that WT Salmonella stimulated beta-catenin degradation and decreased the physical association between NF-kappa B and beta-catenin. Accordingly, WT Salmonella infection decreased the expression of c-myc, a beta-catenin-regulated target gene and increased the levels of IL-6 and TNF-alpha, the NF kappa B-regulated target genes. Bacterial infection directly stimulated phosphorylation of beta-catenin, both in vivo and in vitro. Closer examination revealed that GSK-3beta kinase activity was increased in response to WT Salmonella whereas non-virulent Salmonella had no effect. Additionally, cells expressing constitutively active beta-catenin showed I kappa B stabilization and inhibition of NF-kappa B activity not only after WT Salmonella, but also after commensal bacteria (E. coli F18). This study indicates a new role for beta-catenin as a negative regulator of inflammation. [ABSTRACT FROM AUTHOR]
- Published
- 2007
39. CD 146 is a coreceptor for VEGFR-2 in tumor angiogenesis.
- Author
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Tianxia Jiang, Jie Zhuang, Hongxia Duan, Yongting Luo, Qiqun Zeng, Kelong Fan, Huiwen Yan, Di Lu, Zhongde Ye, Junfeng Hao, Jing Feng, Dongling Yang, and Xiyun Yan
- Subjects
- *
CD antigens , *MITOGEN-activated protein kinases , *NEOVASCULARIZATION , *VASCULAR endothelial growth factor receptors , *ENDOTHELIAL cells , *PHOSPHORYLATION , *BEVACIZUMAB , *KNOCKOUT mice - Abstract
CD146 is a novel endothelial blomarker and plays an essential role in angiogen-esis; however, its role in the molecular mechanism underlying angiogenesis re-mains poorly understood. In the present study, we show that CD146 interacts di-rectly with VEGFR-2 on endothelial cells and at the molecular level and identify the structural basis of CD146 binding to VEGFR-2. In addition, we show that CD146 is required in VEGF-induced VEGFR-2 phosphorylation, AKT/p38 MAPKS/NF-κB activation, and thus promotion of endo-thelial cell migration and microvascular formation. Furthermore, we show that anti-CD146 AA98 or CD146 sIRNA abro-gates all VEGFR-2 activation induced by VEGF. An in vivo angiogenesis assay showed that VEGF-promoted microvascu-lar formation was impaired in the endothe-lial conditional knockout of CD146 (CD146EC-KO). Our animal experiments demonstrated that anti-CD146 (AA98) and anti-VEGF (bevacizumab) have an addi-tive inhibitory effect on xenografted hu-man pancreatic and melanoma tumors. The results of the present study suggest that CD146 is a new coreceptor for VEGFR-2 and is therefore a promising target for blocking tumor-related angio-genesis. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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