143 results on '"Zhiping Gu"'
Search Results
2. Genetic analysis and prenatal diagnosis of a pedigree with developmental retardation due to paternal 8q/18q translocation
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Chunyan Jin, Xuefang Li, Jiao Chen, Zhiping Gu, and Tianhui Xu
- Subjects
18q deletion syndrome ,8q duplication ,8q/18q translocation ,balanced translocation ,enrichment analysis ,prenatal diagnosis ,Medicine ,Medicine (General) ,R5-920 - Abstract
Key Clinical Message Balanced reciprocal chromosomal translocation carriers will have greater risk to experience recurrent miscarriages, embryonic death, and infertility. We show the pedigree carrying a paternal karyotype which was reported first. This research helps to better understand the clinical manifestations and prognosis of patients with this rare chromosomal abnormality.
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- 2023
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3. Prenatal diagnosis by whole exome sequencing in a family with a novel TBR1 mutation causing intellectual disability
- Author
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Chunyan Jin, Hua Qian, Tianhui Xu, Jiao Chen, Xuefang Li, and Zhiping Gu
- Subjects
Whole exome sequencing ,TBR1 mutation ,Prenatal diagnosis ,Intellectual disability ,Gynecology and obstetrics ,RG1-991 - Abstract
Objective: To provide prenatal diagnosis for a pregnant woman with genetic history of intellectual disability. Case report: A Chinese pedigree with intellectual disability was collected in this study. Cytogenetic analysis, chromosomal microarray analysis (CMA) and whole exome sequencing (WES) followed by Sanger validation were conducted to identify the genetic pathogenesis. A novel heterozygous deletion c.370_374delTTCCC in TBR1 gene was identified, leading to a frameshift mutation starting at Phe124 followed by a premature stop codon at position 141 (p.Phe124Valfs∗18). Segregation analysis identified that this novel mutation is co-segregated among the affected family members but absent in unaffected family members. Prenatal diagnosis indicated the absence of this mutation, and the family decided to continue the pregnancy after genetic counseling. Conclusion: Our findings demonstrated the significance of genetic testing in the diagnosis of intellectual disability. This work also confirmed the effectiveness of WES in prenatal diagnosis.
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- 2021
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- View/download PDF
4. A prenatal diagnosis case of partial duplication 21q21.1-q21.2 with normal phenotype maternally inherited
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Chunyan Jin, Zhiping Gu, Xiaohan Jiang, Pei Yu, and Tianhui Xu
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Down syndrome ,Down syndrome critical region (DSCR) ,Partial duplication 21 ,Prenatal diagnosis ,Internal medicine ,RC31-1245 ,Genetics ,QH426-470 - Abstract
Abstract Background Down syndrome is characterized by trisomy 21 or partial duplication of chromosome 21. Extensive studies have focused on the identification of the Down Syndrome Critical Region (DSCR). We aim to provide evidence that duplication of 21q21.1-q21.2 should not be included in the DSCR and it has no clinical consequences on the phenotype. Case presentation Because serological screening was not performed at the appropriate gestational age, noninvasive prenatal testing (NIPT) analysis was performed for a pregnant woman with normal prenatal examinations at 22 weeks of gestation. The NIPT results revealed a 5.8 Mb maternally inherited duplication of 21q21.1-q21.2. To assess whether the fetus also carried this duplication, ultrasound-guided amniocentesis was conducted, and the result of chromosomal microarray analysis (CMA) with amniotic fluid showed a 6.7 Mb duplication of 21q21.1-q21.2 (ranging from position 18,981,715 to 25,707,009). This partial duplication of 21q21.1-q21.2 in the fetus was maternally inherited. After genetic counseling, the pregnant woman and her family decided to continue the pregnancy. Conclusion Our case clearly indicates that 21q21.1-q21.2 duplication is not included in the DSCR and most likely has no clinical consequences on phenotype.
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- 2021
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5. Identification of a novel TP63 mutation causing nonsyndromic cleft lip with or without cleft palate
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Tianhui Xu, Mengmeng Du, Xinhua Bu, Donglan Yuan, Zhiping Gu, Pei Yu, Xuefang Li, Jiao Chen, and Chunyan Jin
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Cleft lip with or without cleft palate ,Nonsyndromic cleft lip with or without cleft palate ,TP63 ,Whole exome sequencing ,Internal medicine ,RC31-1245 ,Genetics ,QH426-470 - Abstract
Abstract Background Cleft lip with or without cleft palate (CL/P) is the most common craniofacial anomaly with a high incidence of live births. The specific pathogenesis of CL/P is still unclear, although plenty of studies have been conducted. Variations of tumor protein 63 (TP63) was reported to be related to the phenotype of CL/P. The case discussed in this report involves a pedigree with mutation at TP63 gene, and the variation was not reported before. Case presentation A Chinese pedigree with CL/P was collected in this study. The proband is a 3-year-old boy with the phenotype of CL/P, while his global development and intelligence are normal. After two CL/P repair operations, he looks almost normal. The proband's uncle and grandmother both have the phenotype of CL/P. Cytogenetic analysis and chromosomal microarray analysis (CMA) were performed, followed by whole exome sequencing (WES) and sanger validation. Analysis of WES revealed a variant of C>T at nucleotide position 1324 (1324C>T) of TP63 gene, possibly producing a truncated protein with a premature stop codon at amino acid position 442 (p.Q442*). This mutation was localized at the oligomerization domain (OD) of TP63 and might impair the capacity of p63 oligomerization. Conclusion The mutation in TP63 was recognized to be the possible cause of the phenotype of CL/P in this pedigree. This report provides some evidence for the clinical diagnosis of CL/P. And our study also provides clinical evidence for the molecular mechanism of TP63 gene causing nonsyndromic cleft lip with or without cleft palate (NSCL/P).
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- 2021
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6. Comparison between minimally invasive plate osteosynthesis and open reduction-internal fixation for proximal humeral fractures: a meta-analysis based on 1050 individuals
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Feilong Li, Xuqiang Liu, Fuqiang Wang, Zhiping Gu, Qianyuan Tao, Cong Yao, Xuwen Luo, and Tao Nie
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Minimally invasive plate osteosynthesis (MIPO) ,Open reduction–internal fixation (ORIF) ,Proximal humeral fractures ,Meta-analysis ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Background This meta-analysis aimed to compare the clinical outcomes and complications of minimally invasive plate osteosynthesis (MIPO) and open reduction–internal fixation (ORIF) in patients with proximal humeral fractures. Methods We searched PubMed, EMBASE, Ovid, and the Cochrane Library to identify all relevant studies from inception to April 2019. Cochrane Collaboration’s Review Manage 5.3 was used for meta-analysis. Results Sixteen studies involving 1050 patients (464 patients in the MIPO group and 586 patients in the ORIF group) were finally included. According to the meta-analysis, MIPO was superior to ORIF in operation time, blood loss, postoperative pain, fracture union time, and constant score. However, MIPO was associated with more exposure to radiation and axillary nerve injury. No significant differences were found in length of hospital stays and complication except for axillary nerve injury. Conclusion The present evidence indicates that compared to ORIF, MIPO had advantages in functional outcomes, operation time, blood loss, postoperative pain, and fracture union time for the treatment of PHFs. However, the MIPO technique had a higher rate of axillary nerve injury and longer radiation time compared to ORIF.
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- 2019
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7. Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community
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Yun Zhang, Edward B. Klem, Wei Jen, Richard H. Scheuermann, Christopher N. Larsen, Sam Zaremba, Sanjeev Kumar, Brett E. Pickett, Douglas S. Greer, Zhiping Gu, Guangyu Sun, Liwei Zhou, and Lucy Stewart
- Subjects
virus ,database ,bioinformatics ,Coronavirus ,SARS ,SARS-CoV ,Coronaviridae ,comparative genomics ,Microbiology ,QR1-502 - Abstract
Several viruses within the Coronaviridae family have been categorized as either emerging or re-emerging human pathogens, with Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) being the most well known. The NIAID-sponsored Virus Pathogen Database and Analysis Resource (ViPR, www.viprbrc.org) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses, including the entire Coronaviridae family. ViPR provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, host factor data, and other data types through an intuitive web-based search interface. Records returned from these queries can then be subjected to web-based analyses including: multiple sequence alignment, phylogenetic inference, sequence variation determination, BLAST comparison, and metadata-driven comparative genomics statistical analysis. Additional tools exist to display multiple sequence alignments, view phylogenetic trees, visualize 3D protein structures, transfer existing reference genome annotations to new genomes, and store or share results from any search or analysis within personal private ‘Workbench’ spaces for future access. All of the data and integrated analysis and visualization tools in ViPR are made available without charge as a service to the Coronaviridae research community to facilitate the research and development of diagnostics, prophylactics, vaccines and therapeutics against these human pathogens.
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- 2012
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8. HERS: Modeling Influential Contexts with Heterogeneous Relations for Sparse and Cold-Start Recommendation.
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Liang Hu 0004, Songlei Jian, Longbing Cao, Zhiping Gu, Qingkui Chen, and Artak Amirbekyan
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- 2019
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9. Diversifying Personalized Recommendation with User-session Context.
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Liang Hu 0004, Longbing Cao, Shoujin Wang, Guandong Xu 0001, Jian Cao 0001, and Zhiping Gu
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- 2017
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10. Determination of the acidic structure and Lewis activity in an Fe-based ionic liquid with slope analysis of the quantitative pyridine-IR spectrum
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Fen Liu, Wenxuan Bai, Zhiping Gu, Jingcong Zhang, Jinxiang Chen, and Jiang Yu
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Materials Chemistry ,General Chemistry ,Catalysis - Abstract
Protonation, Fe2+ and solvent can induce different acidic structures and Lewis activity of Fe-IL by analyzing the slope of IA(X) ∼ n(Py).
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- 2023
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11. Effects of aprotic solvents on the physicochemical properties and ferric ion oxidation activity of iron-based ionic liquids
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Wenxuan Bai, Jinxiang Chen, Fen Liu, Jingcong Zhang, Xiaodong Zhang, Zhiping Gu, and Jiang Yu
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General Physics and Astronomy ,Physical and Theoretical Chemistry - Abstract
The oxidation activity and solvation effect of iron-based ionic liquid (BmimFeCl4) are significantly affected by the structure and polarity of the added solvents.
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- 2023
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12. <scp>Lin28A</scp> alleviates ovariectomy‐induced osteoporosis through activation of the AMP‐activated protein kinase pathway in rats
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Liang Cai, Zhanwang Gao, and Zhiping Gu
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Ovariectomy ,RNA-Binding Proteins ,Core Binding Factor Alpha 1 Subunit ,AMP-Activated Protein Kinases ,Alkaline Phosphatase ,Rats ,Rats, Sprague-Dawley ,Rheumatology ,Bone Density ,Humans ,Animals ,Osteoporosis ,Female ,Calcium ,Reactive Oxygen Species - Abstract
To investigate the role of Lin28A in ovariectomy-induced osteoporosis and to elucidate the underlying molecular mechanism.Bilateral ovariectomy was conducted to generate an ovariectomy (OVX) rat model. Western blotting was performed to assess the relative expression levels of Lin28A, osteocalcin (OCN), runt-related transcription factor 2 (RUNX2), adenosine monophosphate-activated protein kinase (AMPK) and phosphorylated AMPK (p-AMPK) proteins. Enzyme-linked immunosorbent assays were performed to detect the serum levels of calcium, E2, alkaline phosphatase (ALP) and interleukin (IL)-1β. Three-point bending test was used to assess biomechanical parameters of left femoral diaphysis. Hematoxylin and eosin (HE) staining was conducted to detect the trabecular structure of bone tissue. Dihydroethidium assay kit was used to measure the intracellular reactive oxygen species (ROS) level in osteoclasts. Alizarin red staining revealed the calcium deposit in bone marrow stromal cells (BMSC).The expression levels of Lin28A, OCN, RUNX2, AMPK and p-AMPK proteins were significantly decreased in OVX rats. The serum levels of calcium, E2, ALP and IL-1β were significantly declined in OVX rats. Biomechanical parameters of left femoral diaphysis were significantly decreased in OVX rats. OVX-induced trabecular abnormalities. ROS level was dramatically increased in the bone tissue of OVX rats, and calcium deposit was dramatically decreased in BMSC cells of OVX rats. These effects induced by OVX could be prevented by overexpression of Lin28A.Lin28A alleviates ovariectomy-induced osteoporosis through activation of AMPK pathway in rats.
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- 2022
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13. Influenza Research Database: An integrated bioinformatics resource for influenza virus research.
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Yun Zhang 0021, Brian D. Aevermann, Tavis K. Anderson, David F. Burke, Gwenaelle Dauphin, Zhiping Gu, Sherry He, Sanjeev Kumar, Christopher N. Larsen, Alexandra J. Lee, Xiaomei Li, Catherine Macken, Colin Mahaffey, Brett E. Pickett, Brian Reardon, Thomas Smith, Lucy Stewart, Christian Suloway, Guangyu Sun, Lei Tong, Amy L. Vincent, Bryan Walters, Sam Zaremba, Hongtao Zhao, Liwei Zhou, Christian M. Zmasek, Edward B. Klem, and Richard H. Scheuermann
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- 2017
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14. Improving the Quality of Recommendations for Users and Items in the Tail of Distribution.
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Liang Hu 0004, Longbing Cao, Jian Cao 0001, Zhiping Gu, Guandong Xu 0001, and Jie Wang 0006
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- 2017
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15. hnRNPU-mediated pathogenic alternative splicing drives gastric cancer progression
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Guoguo Jin, Yanming Song, Shaobo Fang, Mingyang Yan, Zhaojie Yang, Yang Shao, Kexin Zhao, Meng Liu, Zhenwei Wang, Zhiping Guo, and Zigang Dong
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Gastric cancer ,hnRNPU ,FTO ,Alternative splicing ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Alternative splicing (AS) is a process that facilitates the differential inclusion of exonic sequences from precursor messenger RNAs, significantly enhancing the diversity of the transcriptome and proteome. In cancer, pathogenic AS events are closely related to cancer progression. This study aims to investigate the role and regulatory mechanisms of AS in gastric cancer (GC). Methods We analyzed AS events in various tumor samples and identified hnRNPU as a key splicing factor in GC. The effects of hnRNPU on cancer progression were assessed through in vitro and in vivo experiments. Gene knockout models and the FTO inhibitor (meclofenamic acid) were used to validate the interaction between hnRNPU and FTO and their impact on AS. Results We found that hnRNPU serves as a key splicing factor in GC, and its high expression is associated with poor clinical prognosis. Genetic depletion of hnRNPU significantly reduced GC progression. Mechanistically, the m6A demethylase FTO interacts with hnRNPU transcripts, decreasing the m6A modification levels of hnRNPU, which leads to exon 14 skipping of the MET gene, thereby promoting GC progression. The FTO inhibitor meclofenamic acid effectively inhibited GC cell growth both in vitro and in vivo. Conclusion The FTO/hnRNPU axis induces aberrant exon skipping of MET, thereby promoting GC cell growth. Targeting the FTO/hnRNPU axis may interfere with abnormal AS events and provide a potential diagnostic and therapeutic strategy for GC. Graphical Abstract Schematic model for the findings of this work: Aberrant hnRNPU in GC binds FTO. The m6A-modified hnRNPU transcripts are recognized by m6A reader YTHDF3 and subsequently demethylated by FTO. This demethylation enhances the stability of hnRNPU mRNA, consequently promoting alternative splicing of MET. The altered splicing pattern ultimately contributes to the proliferation of GC cells.
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- 2025
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16. Data from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models
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Carol J. Bult, Atul J. Butte, Helen Parkinson, Marcel Kool, Stefan M. Pfister, Frédéric Amant, S. John Weroha, Alana Welm, David M. Weinstock, Robert J. Wechsler-Reya, Emilie Vinolo, Livio Trusolino, Je Kyung Seong, Oscar M. Rueda, Daniel S. Peeper, James M. Olson, Steven B. Neuhauser, Enzo Medico, Jeremy Mason, K.C. Kent Lloyd, Michael T. Lewis, Tin O. Khor, Kristel Kemper, Jos Jonkers, Peter J. Houghton, Els Hermans, Melissa A. Haendel, Danielle Greenawalt, Neal C. Goodwin, Kristopher K. Frese, Stephane Ferretti, Yvonne A. Evrard, Olivier Duchamp, James H. Doroshow, Jonathan R. Dry, Heidi Dowst, Dominic A. Clark, Amanda L. Christie, Carlos Caldas, Annette T. Byrne, Matthew H. Brush, Alejandra Bruna, Andrea Bertotti, Debra M. Krupke, Dale A. Begley, Patrick Dunn, Jeffrey A. Wiser, Zhiping Gu, Sebastian Brabetz, Mark A. Murakami, Giorgio Inghirami, Theodore Goldstein, Nathalie Conte, and Terrence F. Meehan
- Abstract
Patient-derived tumor xenograft (PDX) mouse models have emerged as an important oncology research platform to study tumor evolution, mechanisms of drug response and resistance, and tailoring chemotherapeutic approaches for individual patients. The lack of robust standards for reporting on PDX models has hampered the ability of researchers to find relevant PDX models and associated data. Here we present the PDX models minimal information standard (PDX-MI) for reporting on the generation, quality assurance, and use of PDX models. PDX-MI defines the minimal information for describing the clinical attributes of a patient's tumor, the processes of implantation and passaging of tumors in a host mouse strain, quality assurance methods, and the use of PDX models in cancer research. Adherence to PDX-MI standards will facilitate accurate search results for oncology models and their associated data across distributed repository databases and promote reproducibility in research studies using these models. Cancer Res; 77(21); e62–66. ©2017 AACR.
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- 2023
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17. S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models
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Carol J. Bult, Atul J. Butte, Helen Parkinson, Marcel Kool, Stefan M. Pfister, Frédéric Amant, S. John Weroha, Alana Welm, David M. Weinstock, Robert J. Wechsler-Reya, Emilie Vinolo, Livio Trusolino, Je Kyung Seong, Oscar M. Rueda, Daniel S. Peeper, James M. Olson, Steven B. Neuhauser, Enzo Medico, Jeremy Mason, K.C. Kent Lloyd, Michael T. Lewis, Tin O. Khor, Kristel Kemper, Jos Jonkers, Peter J. Houghton, Els Hermans, Melissa A. Haendel, Danielle Greenawalt, Neal C. Goodwin, Kristopher K. Frese, Stephane Ferretti, Yvonne A. Evrard, Olivier Duchamp, James H. Doroshow, Jonathan R. Dry, Heidi Dowst, Dominic A. Clark, Amanda L. Christie, Carlos Caldas, Annette T. Byrne, Matthew H. Brush, Alejandra Bruna, Andrea Bertotti, Debra M. Krupke, Dale A. Begley, Patrick Dunn, Jeffrey A. Wiser, Zhiping Gu, Sebastian Brabetz, Mark A. Murakami, Giorgio Inghirami, Theodore Goldstein, Nathalie Conte, and Terrence F. Meehan
- Abstract
A figure showing the process of generating and using PDX models.
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- 2023
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18. Learning Informative Priors from Heterogeneous Domains to Improve Recommendation in Cold-Start User Domains.
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Liang Hu 0004, Longbing Cao, Jian Cao 0001, Zhiping Gu, Guandong Xu 0001, and Dingyu Yang
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- 2016
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19. Bayesian Heteroskedastic Choice Modeling on Non-identically Distributed Linkages.
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Liang Hu 0004, Wei Cao, Jian Cao 0001, Guandong Xu 0001, Longbing Cao, and Zhiping Gu
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- 2014
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20. Deep Modeling of Group Preferences for Group-Based Recommendation.
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Liang Hu 0004, Jian Cao 0001, Guandong Xu 0001, Longbing Cao, Zhiping Gu, and Wei Cao
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- 2014
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21. Personalized recommendation via cross-domain triadic factorization.
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Liang Hu 0004, Jian Cao 0001, Guandong Xu 0001, Longbing Cao, Zhiping Gu, and Can Zhu
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- 2013
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22. Cross-Domain Collaborative Filtering via Bilinear Multilevel Analysis.
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Liang Hu 0004, Jian Cao 0001, Guandong Xu 0001, Jie Wang 0006, Zhiping Gu, and Longbing Cao
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- 2013
23. Latent Informative Links Detection.
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Liang Hu 0004, Jian Cao 0001, Guandong Xu 0001, and Zhiping Gu
- Published
- 2012
24. Prenatal diagnosis by whole exome sequencing in a family with a novel TBR1 mutation causing intellectual disability
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Jiao Chen, Xuefang Li, Zhiping Gu, Chunyan Jin, Tianhui Xu, and Hua Qian
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Genetics ,Pregnancy ,medicine.diagnostic_test ,business.industry ,Genetic counseling ,Whole exome sequencing ,Prenatal diagnosis ,Intellectual disability ,Obstetrics and Gynecology ,Gynecology and obstetrics ,medicine.disease ,TBR1 mutation ,Frameshift mutation ,Mutation (genetic algorithm) ,medicine ,RG1-991 ,business ,Exome sequencing ,Genetic testing - Abstract
Objective To provide prenatal diagnosis for a pregnant woman with genetic history of intellectual disability. Case report A Chinese pedigree with intellectual disability was collected in this study. Cytogenetic analysis, chromosomal microarray analysis (CMA) and whole exome sequencing (WES) followed by Sanger validation were conducted to identify the genetic pathogenesis. A novel heterozygous deletion c.370_374delTTCCC in TBR1 gene was identified, leading to a frameshift mutation starting at Phe124 followed by a premature stop codon at position 141 (p.Phe124Valfs∗18). Segregation analysis identified that this novel mutation is co-segregated among the affected family members but absent in unaffected family members. Prenatal diagnosis indicated the absence of this mutation, and the family decided to continue the pregnancy after genetic counseling. Conclusion Our findings demonstrated the significance of genetic testing in the diagnosis of intellectual disability. This work also confirmed the effectiveness of WES in prenatal diagnosis.
- Published
- 2021
25. Absorption and Hydrolysis Performance and Dft Study of Cos in Tbee and Peg200 Aqueous Solutions
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Zhiping Gu, Wenxuan Bai, Jinxiang Chen, Fen Liu, and Jiang Yu
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- 2023
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26. Service Discovery and Recommendation in Rough Hierarchical Granular Computing.
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Liang Hu 0004, Jian Cao 0001, and Zhiping Gu
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- 2010
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27. Modeling Semantic Web Service using Semantic Templates.
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Liang Hu 0004, Jian Cao 0001, and Zhiping Gu
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- 2008
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28. Development of phase-change system NHD/MDEA/Fe-IL with the ability of oxidation and H+ enrichment
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jiang Yu, Chengming Xiong, Jingcong Zhang, Zhiping Gu, Jinxiang Chen, Wenxuan Bai, and Liu Fen
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- 2022
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29. Study on the Clinical Value of Noninvasive Prenatal Testing in Screening the Chromosomal Abnormalities of the Fetus in the Elderly Pregnant Women
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Zhiping Gu, Mengmeng Du, Tianhui Xu, and Chunyan Jin
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Adult ,Chromosome Aberrations ,General Immunology and Microbiology ,Article Subject ,Applied Mathematics ,Noninvasive Prenatal Testing ,Trisomy ,General Medicine ,DNA ,General Biochemistry, Genetics and Molecular Biology ,Fetus ,Pregnancy ,Modeling and Simulation ,Humans ,Female ,Pregnant Women ,Down Syndrome ,Aged ,Maternal Age - Abstract
Introduction. To explore the clinical value of noninvasive prenatal testing (NIPT) in screening the chromosomal abnormalities of the fetus in the elderly pregnant women. Materials and Methods. Between January 2020 and December 2021, 1949 elderly pregnant women underwent NIPT in our hospital. At the same time, 236 elderly pregnant women received invasive prenatal diagnosis, and the pregnancy outcomes were followed-up. Results. When NIPT was used for prenatal screening of fetal chromosomal aneuploidy, its diagnostic coincidence rate for trisomy 21 was the highest, with a coincidence rate of 90.00%, and the diagnostic coincidence rate for other chromosomal abnormalities was the lowest, only 22.22%. The sensitivity, specificity, positive predictive rate, and negative predictive rate for T21 by NIPT were 100%, 99.97%, 94.28%, and 100%; for T18 were 100%, 99.92%, 72.22%, and 100%, respectively; and for T13 were 100%, 99.95%, 50%, and 100%, respectively. Patients with high risks according to NIPT results further received invasive prenatal diagnosis, and 18 cases were excluded from the follow-up. For the remaining 1933 cases in the NIPT group, there was an incidence of 2.28% of adverse pregnancy outcomes. For the remaining 234 cases in the Amniocentesis group, there was an incidence of 1.28% of adverse pregnancy outcomes. There was no significant difference between the two groups ( P > 0.05 ). The diagnostic rate of fetal chromosomal abnormalities in pregnant women under 40 years old was about 0.39-0.79%; however, the risk for people over 40 is relatively high at 1.32-4.44%. Conclusion. The noninvasive prenatal screening of fetal DNA in the second trimester of pregnancy for elderly pregnant women has high application value in the prediction of pregnancy outcome. The high risk of pregnancy can be determined by detecting trisomy 21, 18, and 13 syndromes, and the probability of adverse pregnancy outcome increases.
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- 2022
30. Insight of intensified absorption and hydrolysis of COS in ternary system of TBEE and PEG200 and H2O
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Zhiping Gu, Wenxuan Bai, Jinxiang Chen, Jiang Yu, and Fen Liu
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Process Chemistry and Technology ,Chemical Engineering (miscellaneous) ,Pollution ,Waste Management and Disposal - Published
- 2023
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31. Partially-independent component analysis for tissue heterogeneity correction in microarray gene expression analysis.
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Yue Joseph Wang, Junying Zhang, Javed I. Khan, Robert Clarke, and Zhiping Gu
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- 2003
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32. [Mosaic trisomy 20: discrepancy between cyto-and molecular genetic technologies in prenatal diagnosis]
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Chunyan, Jin, Tianhui, Xu, Jiao, Chen, Xuefang, Li, and Zhiping, Gu
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Mosaicism ,Pregnancy ,Placenta ,Prenatal Diagnosis ,Amniocentesis ,Chromosomes, Human, Pair 20 ,Humans ,Female ,Trisomy ,Amniotic Fluid ,Molecular Biology ,In Situ Hybridization, Fluorescence - Abstract
To provide genetic counseling and prenatal diagnosis for a fetus with mosaic trisomy 20.Chromosomal karyotyping, chromosomal microarray analysis (CMA) and fluorescence in situ hybridization (FISH) were carried out for a pregnant woman with advanced maternal age.The karyotype of amniotic fluid sample was 47,XN,+20, whilst the result of CMA was normal. To verify this discrepancy, CMA was performed again with the cultured amniotic fluid, which yielded a result of 47,XN,+20. FISH assay of the amniotic fluid sample was nuc ish(D20Z1)×3[11]/(D20Z1)×2[89], which indicated that about 11% of fetal cells were trisomy 20. After the fetus was born, the karyotype of peripheral blood sample was normal.The amniotic fluid sample might be mosaic trisomy 20, and a dominant growth of 47,XN,+20 cells had occurred during the culture process, resulting in alteration of amniotic fluid cell composition. Mosaic trisomy 20 indicated by FISH may be attributed to confined placental mosaicism or somatic mosaicism of trisomy 20.
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- 2022
33. ViPR: an open bioinformatics database and analysis resource for virology research.
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Brett E. Pickett, Eva L. Sadat, Yun Zhang 0021, Jyothi Noronha, R. Burke Squires, Victoria Hunt, Mengya Liu, Sanjeev Kumar, Sam Zaremba, Zhiping Gu, Liwei Zhou, Christopher N. Larsen, Jonathan Dietrich, Edward B. Klem, and Richard H. Scheuermann
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- 2012
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34. A Cardiac‐Targeting and Anchoring Bimetallic Cluster Nanozyme Alleviates Chemotherapy‐Induced Cardiac Ferroptosis and PANoptosis
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Junyue Xing, Xiaohan Ma, Yanan Yu, Yangfan Xiao, Lu Chen, Weining Yuan, Yingying Wang, Keyu Liu, Zhiping Guo, Hao Tang, Kelong Fan, and Wei Jiang
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antioxidant activity ,bimetallic cluster nanozyme ,DOX‐induced cardiotoxicity ,ferroptosis ,PANoptosis ,Science - Abstract
Abstract Doxorubicin (DOX), a potent antineoplastic agent, is commonly associated with cardiotoxicity, necessitating the development of strategies to reduce its adverse effects on cardiac function. Previous research has demonstrated a strong correlation between DOX‐induced cardiotoxicity and the activation of oxidative stress pathways. This work introduces a novel antioxidant therapeutic approach, utilizing libraries of tannic acid and N‐acetyl‐L‐cysteine‐protected bimetallic cluster nanozymes. Through extensive screening for antioxidative enzyme‐like activity, an optimal bimetallic nanozyme (AuRu) is identified that possess remarkable antioxidant characteristics, mimicking catalase‐like enzymes. Theoretical calculations reveal the surface interactions of the prepared nanozymes that simulate the hydrogen peroxide decomposition process, showing that these bimetallic nanozymes readily undergo OH⁻ adsorption and O₂ desorption. To enhance cardiac targeting, the atrial natriuretic peptide is conjugated to the AuRu nanozyme. These cardiac‐targeted bimetallic cluster nanozymes, with their anchoring capability, effectively reduce DOX‐induced cardiomyocyte ferroptosis and PANoptosis without compromising tumor treatment efficacy. Thus, the therapeutic approach demonstrates significant reductions in chemotherapy‐induced cardiac cell death and improvements in cardiac function, accompanied by exceptional in vivo biocompatibility and stability. This study presents a promising avenue for preventing chemotherapy‐induced cardiotoxicity, offering potential clinical benefits for cancer patients.
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- 2025
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35. Prognostic value of preoperative nutritional status for postoperative moderate to severe acute kidney injury among older patients undergoing coronary artery bypass graft surgery: a retrospective study based on the MIMIC-IV database
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Peng Bao, Peng Qiu, Tao Li, Xue Lv, Junyu Wu, Shaojie Wu, Hao Li, and Zhiping Guo
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Acute kidney injury ,CABG ,malnutrition ,prediction model ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Objective To investigate the association between preoperative nutritional scores and moderate-to-severe acute kidney injury (AKI) after coronary artery bypass graft (CABG) surgery and the predictive significance of nutritional indices for moderate to severe AKI.Methods This study retrospectively included older patients underwent CABG surgery from the Medical Information Mart for Intensive Care (MIMIC) database. Nutritional scores were calculated by the Geriatric Nutritional Risk Index (GNRI) and the Prognostic Nutritional Index (PNI), respectively. Moderate-to-severe injury was determined by KDIGO criteria. Logistic regression, subgroup analysis, and restricted cubic splines were utilized to investigate the association. The predictive value was also assessed by the area under the curve (AUC), net reclassification index (NRI), and integrated discrimination improvement (IDI).Results A total of 1,007 patients were retrospectively included, of which 100 (9.9%) and 380 (37.7%) had malnutrition calculated by GNRI and PNI scores. The incidence of moderate-to-severe AKI was 524 (52.0%). After adjustment for selected risk factors, worse nutritional scores were associated with a higher incidence of moderate-to-severe AKI (PGNRI
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- 2024
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36. Alterations of regional homogeneity and functional connectivity in different hoehn and yahr stages of Parkinson's disease
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Xinhui Wang, Yu Shen, Wei Wei, Yan Bai, Panlong Li, Kaiyue Ding, Yihang Zhou, Jiapei Xie, Xianchang Zhang, Zhiping Guo, and Meiyun Wang
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Parkinson’s disease ,Resting-state functional magnetic resonance imaging ,Regional homogeneity ,Functional connectivity ,Primary motor cortex ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Purpose: Using regional homogeneity (ReHo) and functional connectivity (FC) to assess alterations in brain function and their potential relation to different Hoehn and Yahr (H&Y) stages in Parkinson's disease (PD). Materials and methods: 66 patients with PD and 57 age- and sex-matched healthy control (HC) participants were recruited. All subjects underwent clinical assessments and resting-state functional magnetic resonance imaging (rs-fMRI) scanning. We analyzed alterations in regional brain activity using ReHo analyses in all subjects and further explored their relationship to disease severity. Finally, the brain region significantly associated with disease severity was used as a seed point to analyze the FC changes between it and other brain regions in the whole brain. Results: Compared with HC participants, PD patients showed a significant decrease ReHo in the sensorimotor network (bilateral precentral and postcentral gyrus). The ReHo value of the left precentral gyrus in PD patients decreased with increasing H&Y stage and correlated negatively with Unified Parkinson’s Disease Rating Scale (UPDRS) III scores. Further, FC analysis of the left precentral gyrus as a region of interest showed that functional activity between the left precentral gyrus and sensorimotor network, default network, and visual network was decreased. Conclusion: The left precentral gyrus plays an important role in the pathophysiological mechanisms of PD patients, and this finding further highlights the potential of the primary motor cortex (M1) as a non-invasive therapeutic target for neuromodulation in PD patients.
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- 2024
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37. Enoxacin inhibits proliferation and invasion of human osteosarcoma cells and reduces bone tumour volume in a murine xenograft model
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Bin Zhang, Tao Nie, Qianyuan Tao, Xuwen Luo, Fuqiang Wang, Min Dai, Xuqiang Liu, Xiaolong Yu, Feilong Li, Hongxian Fan, Zhiping Gu, and Cong Yao
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0301 basic medicine ,Cancer Research ,enoxacin ,proliferation ,medicine.medical_treatment ,MMP9 ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,osteosarcoma ,medicine ,Enoxacin ,Chemotherapy ,Oncogene ,business.industry ,apoptosis ,Cancer ,Articles ,invasion ,medicine.disease ,Molecular medicine ,tumour xenograft model ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,Osteosarcoma ,business ,medicine.drug - Abstract
Osteosarcoma is the most prevalent primary bone malignancy in children and adolescents. Neoadjuvant chemotherapy combined with surgical resection, the current standard treatment of osteosarcoma, is associated with a 5-year survival rate of only ~70%. Therefore, it is necessary to identify new, more effective treatment strategies for patients with this lethal disease. Enoxacin is a highly effective broad-spectrum fluoroquinolone antibiotic with low toxicity. The drug inhibits the growth and metastasis of numerous tumour types, but its efficacy has not been studied in osteosarcoma. This study assessed the antitumour effects of enoxacin in osteosarcoma 143B cells and in a murine tumour xenograft model. Enoxacin inhibited the proliferation, invasion and migration of 143B cells, as well as inducing their apoptosis. These effects were thought to be mediated by downregulation of Bcl-xL, Bxl-2, matrix metalloproteinase (MMP)2 and MMP9 expression. Enoxacin also significantly impaired the growth of bone tumours in nude mice without affecting their liver or kidney function, or blood cell count. Collectively, these results indicate that enoxacin is a promising new drug for osteosarcoma that warrants further evaluation in clinical studies.
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- 2020
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38. Development of Phase-Change Absorbent for Hydrogen Chloride with Hydrogen and Chlorine Generation by Electrolysis
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Fen Liu, Jingcong Zhang, Wenxuan Bai, Jinxiang Chen, Zhiping Gu, and Jiang Yu
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History ,Polymers and Plastics ,General Chemical Engineering ,Environmental Chemistry ,General Chemistry ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
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39. The method of gray model control for the vibration of rotor system
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Xizhe, Zhi, Xiping, Zhu, Yongshou, Liu, and Zhiping, Gu
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- 2004
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40. Iterative normalization of cDNA microarray data.
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Yue Joseph Wang, Jianping Lu, Richard Lee 0002, Zhiping Gu, and Robert Clarke
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- 2002
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41. A Bone-Targeting Enoxacin Delivery System to Eradicate Staphylococcus Aureus-Related Implantation Infections and Bone Loss
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Xiuguo Han, Tao Nie, Qianyuan Tao, Xuwen Luo, Min Dai, Qiang Xu, Cong Yao, Bin Zhang, Feilong Li, Xuqiang Liu, Fuqiang Wang, Zhiping Gu, and Huaen Xu
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medicine.drug_class ,Chemistry ,Antibiotics ,Implant Infection ,Pharmacology ,Bone tissue ,medicine.disease_cause ,medicine.anatomical_structure ,In vivo ,Osteoclast ,Staphylococcus aureus ,medicine ,Enoxacin ,Staphylococcus ,medicine.drug - Abstract
Post-operative infections in orthopaedic implants are severe complications that require urgent solutions. Although conventional antibiotics limit bacterial biofilms formation, they ignore the bone loss caused by osteoclast formation during post-operative orthopaedic implant-related infections. Fortunately, enoxacin exerts dual antibacterial and osteoclast inhibitory effects, playing a pivot in limiting infection and preventing bone loss. However, enoxacin lacks specificity in bone tissue and low bioavailability-relate side effects, which hinders translational practice. Herein, we developed a nanosystem (Eno@MSN-D) based on enoxacin (Eno)-loaded mesoporous silica nanoparticles (MSN), decorated with the eight repeating sequences of aspartate (D-Asp8), and coated with polyethylene glycol (PEG). This Eno@MSN-D delivery nanosystem exhibited both antibacterial and anti-osteoclast properties in vitro. More importantly, Eno@MSN-D allowed the targeted release of enoxacin in infected bone tissues and prevented implant-related infection and bone loss in vivo. Therefore, our work highlights the significance of novel biomaterials that offer new alternatives to treat and prevent orthopaedic staphylococcus aureus-related implantation infections and bone loss.
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- 2021
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42. Allocating inter-provincial CEA in China based on the utility perspective --a method for improving the variable weight function
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Zhiping Guo and Chaohua Xiong
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CEA ,utility ,variable weight function ,improving allocation methods ,allocation principles ,Environmental sciences ,GE1-350 - Abstract
Introduction:At different times, China has pursued different carbon emission reduction targets, so it is crucial to develop a reasonable and flexible allocation scheme for Chinese carbon emissions quotas, referred to as Chinese Emission Allowance (CEA), in order to achieve carbon reduction goals. As important responsible entities for carbon reduction, each province needs to rely on a well-designed CEA allocation scheme to help achieve their emission reduction goals.Methods:Therefore, based on the utility perspective, this paper constructs allocation principles and methods to formulate the inter-provincial CEA allocation scheme for China in 2030. Specifically, the entropy method, SBM model, improved variable weight function, and ARIMA time series model are sequentially adopted to simulate the re-allocation scheme, examine its rationality, and develop CEA allocation schemes under different principles.Results and Discussion:The following conclusions are drawn: 1) The allocation scheme formulated based on historical emission simulation methods, industry benchmark methods, and other current CEA allocation methods has certain irrationality, and future CEA allocation should not follow the original methods; 2) The improved variable weight function is better suited for allocation in CEA than the current original allocation method. The allocation scheme developed under this method, which balances fairness and efficiency principles, is more appropriate for the actual reduction of carbon emissions in China.
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- 2024
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43. Peripheral Blood Lymphocyte Subsets in Factor VIII Inhibitor-Positive Patients with Severe Hemophilia A: A Case-Control Study
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Lu Zhao MM, Yiqun Zhang MD, Xinlei Guo BM, Zhi Li DR, Wenliang Lu MM, Zhijuan Pan MM, Yanru Guo MM, Jiajia Sun MM, Ying Zhang MM, Jinyu Hao MM, and Zhiping Guo MD
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Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Introduction and objectives The present study aimed to investigate different peripheral lymphocyte subsets in patients with severe hemophilia A (HA) and factor VIII (FVIII) inhibitor production. For this, age-matched cases of 19 FVIII inhibitor-positive (IP), 21 FVIII inhibitor-negative (IN) and 45 healthy controls were selected for study. Methods Flow cytometry was used to analyze the peripheral lymphocyte subsets, including T, B, natural killer (NK) and NKT cells. The T cell subsets included CD3 + CD4-CD8- [double negative T (DNT)], CD3 + CD4 + CD8+ [double-positive T (DPT)], CD3 + CD4 + CD8- and CD3 + CD4-CD8+ T cells. Pairwise comparisons of absolute lymphocyte subset values were conducted among the three groups. The cut-off value for absolute lymphocyte counts was determined using receiver operating characteristic curve analysis. Results The results demonstrated that the absolute values of DPT cells in the IN and IP groups were significantly lower than those in the healthy control group ( P = 0.007). The DNT values were also lower in severe HA patients with or without inhibitor than those in healthy subjects, but these differences were not statistically significant ( P = 0.053). In addition, the absolute value of CD4+ Th cells in the IP group was lower than that in the healthy controls ( P = 0.013). Although not statistically significant ( P = 0.064), the absolute values of NKT cells were higher in the IN group compared with the IP group, and higher in the IP group compared with the healthy control group. There were no statistically significant differences in total T, B, CD8 + and NK cells among the IN, IP and healthy control groups. The cut-off value for absolute CD4+ Th cells in the IN group was 598/µl, clinicians should be vigilant for possible FVIII inhibitor production, especially on days prior to FVIII exposure.
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- 2024
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44. Lifestyle behaviors and risk of cardiovascular disease and prognosis among individuals with cardiovascular disease: a systematic review and meta-analysis of 71 prospective cohort studies
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Jian Wu, Yifei Feng, Yuanyuan Zhao, Zhiping Guo, Rongmei Liu, Xin Zeng, Fan Yang, Bei Liu, Jianqing Gu, Clifford Silver Tarimo, Weihao Shao, Xinghong Guo, Quanman Li, Lipei Zhao, Mingze Ma, Zhanlei Shen, Qiuping Zhao, and Yudong Miao
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Lifestyle behaviors ,Cardiovascular disease ,Meta-analysis ,Nutritional diseases. Deficiency diseases ,RC620-627 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Healthy lifestyle behaviors (LBs) have been widely recommended for the prevention and management of cardiovascular disease (CVD). Despite a large number of studies exploring the association between combined LBs and CVD, a notable gap exists in integration of relevant literatures. We conducted a systematic review and meta-analysis of prospective cohort studies to analyze the correlation between combined LBs and the occurrence of CVD, as well as to estimate the risk of various health complications in individuals already diagnosed with CVD. Methods Articles published up to February 10, 2023 were sourced through PubMed, EMBASE and Web of Science. Eligible prospective cohort studies that reported the relations of combined LBs with pre-determined outcomes were included. Summary relative risks (RRs) and 95% confidence intervals (CIs) were estimated using either a fixed or random-effects model. Subgroup analysis, meta-regression, publication bias, and sensitivity analysis were as well performed. Results In the general population, individuals with the healthiest combination of LBs exhibited a significant risk reduction of 58% for CVD and 55% for CVD mortality. For individuals diagnosed with CVD, adherence to the healthiest combination of LBs corresponded to a significant risk reduction of 62% for CVD recurrence and 67% for all-cause mortality, when compared to those with the least-healthy combination of LBs. In the analysis of dose-response relationship, for each increment of 1 healthy LB, there was a corresponding decrease in risk of 17% for CVD and 19% for CVD mortality within the general population. Similarly, among individuals diagnosed with CVD, each additional healthy LB was associated with a risk reduction of 27% for CVD recurrence and 27% for all-cause mortality. Conclusions Adopting healthy LBs is associated with substantial risk reduction in CVD, CVD mortality, and adverse outcomes among individuals diagnosed with CVD. Rather than focusing solely on individual healthy LB, it is advisable to advocate for the adoption of multiple LBs for the prevention and management of CVD. Trial registration PROSPERO: CRD42023431731.
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- 2024
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45. Identification of a novel TP63 mutation causing nonsyndromic cleft lip with or without cleft palate
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Donglan Yuan, Jiao Chen, Zhiping Gu, Pei Yu, Xuefang Li, Tianhui Xu, Mengmeng Du, Xinhua Bu, and Chunyan Jin
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0301 basic medicine ,Proband ,lcsh:Internal medicine ,lcsh:QH426-470 ,Cleft Lip ,Case Report ,030105 genetics & heredity ,Biology ,medicine.disease_cause ,Pathogenesis ,03 medical and health sciences ,Gene expression ,TP63 ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Nonsyndromic cleft lip with or without cleft palate ,lcsh:RC31-1245 ,Genetics (clinical) ,Exome sequencing ,Mutation ,Cleft lip with or without cleft palate ,Whole exome sequencing ,Phenotype ,Human genetics ,Pedigree ,lcsh:Genetics ,030104 developmental biology ,Child, Preschool - Abstract
Background Cleft lip with or without cleft palate (CL/P) is the most common craniofacial anomaly with a high incidence of live births. The specific pathogenesis of CL/P is still unclear, although plenty of studies have been conducted. Variations of tumor protein 63 (TP63) was reported to be related to the phenotype of CL/P. The case discussed in this report involves a pedigree with mutation at TP63 gene, and the variation was not reported before. Case presentation A Chinese pedigree with CL/P was collected in this study. The proband is a 3-year-old boy with the phenotype of CL/P, while his global development and intelligence are normal. After two CL/P repair operations, he looks almost normal. The proband's uncle and grandmother both have the phenotype of CL/P. Cytogenetic analysis and chromosomal microarray analysis (CMA) were performed, followed by whole exome sequencing (WES) and sanger validation. Analysis of WES revealed a variant of C>T at nucleotide position 1324 (1324C>T) of TP63 gene, possibly producing a truncated protein with a premature stop codon at amino acid position 442 (p.Q442*). This mutation was localized at the oligomerization domain (OD) of TP63 and might impair the capacity of p63 oligomerization. Conclusion The mutation in TP63 was recognized to be the possible cause of the phenotype of CL/P in this pedigree. This report provides some evidence for the clinical diagnosis of CL/P. And our study also provides clinical evidence for the molecular mechanism of TP63 gene causing nonsyndromic cleft lip with or without cleft palate (NSCL/P).
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- 2021
46. Whole-course management of chronic obstructive pulmonary disease in primary healthcare: an internet of things-enabled prospective cohort study in China
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Zhiwei Xu, Xingru Zhao, Haonan Kang, Yunxia An, Meihui Wei, Quncheng Zhang, Linqi Diao, Zhiping Guo, and Xiaoju Zhang
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Medicine ,Diseases of the respiratory system ,RC705-779 - Abstract
Background Despite substantial progress in reducing the global burden of chronic obstructive pulmonary disease (COPD), traditional methods to promote understanding and management of COPD are insufficient. We developed an innovative model based on the internet of things (IoT) for screening and management of COPD in primary healthcare (PHC).Methods Electronic questionnaire and IoT-based spirometer were used to screen residents. We defined individuals with a questionnaire score of 16 or higher as high-risk population, COPD was diagnosed according to 2021 Global Initiative for COPD (Global Initiative for Chronic Obstructive Lung Disease) criteria. High-risk individuals and COPD identified through the screening were included in the COPD PHC cohort study, which is a prospective, longitudinal observational study. We provide an overall description of the study’s design framework and baseline data of participants.Results Between November 2021 and March 2023, 162 263 individuals aged over 18 from 18 cities in China were screened, of those 43 279 high-risk individuals and 6902 patients with COPD were enrolled in the cohort study. In the high-risk population, the proportion of smokers was higher than that in the screened population (57.6% vs 31.4%), the proportion of males was higher than females (71.1% vs 28.9%) and in people underweight than normal weight (57.1% vs 32.0%). The number of high-risk individuals increased with age, particularly after 50 years old (χ2=37 239.9, p
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- 2024
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47. The role of cuproptosis-related genes in pan-cancer and the development of cuproptosis-related risk model in colon adenocarcinoma
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Chunwei Li, Lili Zhu, Qinghua Liu, Mengle Peng, Jinhai Deng, Zhirui Fan, Xiaoran Duan, Ruyue Xue, Zhiping Guo, Xuefeng Lv, Lifeng Li, and Jie Zhao
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Cuproptosis ,FDX1 ,CDKN2A ,LIPT1 ,Pan-cancer ,Colon adenocarcinoma ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Cancer is widely regarded as a leading cause of death in humans, with colon adenocarcinoma (COAD) ranking among the most prevalent types. Cuproptosis is a novel form of cell death mediated by protein lipoylation. Cuproptosis-related genes (CRGs) participate in tumourigenesis and development. Their role in pan-cancer and COAD require further investigation. This study comprehensively evaluated the relationship among CRGs, pan-cancer, and COAD. Our research revealed the differential expression of CRGs and the cuproptosis potential index (CPI) between normal and tumour tissues, and further explored the correlation of CRGs or CPI with prognosis, immune infiltration, tumor mutant burden(TMB), microsatellite instability (MSI), and drug sensitivity in pan-cancer. Gene set enrichment analysis (GSEA) revealed that oxidative phosphorylation and fatty acid metabolism pathways were significantly enriched in the high CPI group of most tumours. FDX1 and CDKN2A were chosen for further exploration, and we found an independent association between FDX1 and CDKN2A and prognosis, immune infiltration, TMB, and MSI in pan-cancer. Furthermore, a prognostic risk model based on the association between CRGs and COAD was built, and the correlations between the risk score and prognosis, immune-related characteristics, and drug sensitivity were analysed. COAD was then divided into three subtypes using cluster analysis, and the differences among the subtypes in prognosis, CPI, immune-related characteristics, and drug sensitivity were determined. Due to the level of LIPT1 was notably positive related with the risk score, the cytological identification was carried out to identify the association of LIPT1 with proliferation and migration of colon cancer cells. In summary, CRGs can be used as potential prognostic biomarkers to predict immune infiltration levels in patients with pan-cancer. In addition, the risk model could more accurately predict the prognosis and immune infiltration levels of COAD and better guide the direction of clinical medication. Thus, FDX1, CDKN2A, and LIPT1 may serve as prospective new targets for cancer therapy.
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- 2024
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48. Hardening effect and precipitation evolution of an isothermal aged Mg-Sm based alloy
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Kai Guan, Chuang Li, Zhizheng Yang, Yongsen Yu, Qiang Yang, Wenwen Zhang, Zhiping Guan, Cheng Wang, Min Zha, and Huiyuan Wang
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Magnesium alloys ,Ageing treatment ,Microstructure characterization ,Age-hardening effect ,Precipitates ,Mining engineering. Metallurgy ,TN1-997 - Abstract
The age-hardening behavior and precipitation evolution of an isothermal aged Mg−5Sm−0.6Zn−0.5Zr (wt.%) alloy have been systematically investigated by means of transmission electron microscopy (TEM) and atomic-resolution high-angle annular dark field scanning transmission electron microscopy (HAADF-STEM). The Vickers hardness of the present alloy increases first and then decreases with ageing time. The sample aged at 200 °C for 10 h exhibits a peak-hardness of 90.5 HV. In addition to the dominant β0′ precipitate (orthorhombic, a = 0.642 nm, b = 3.336 nm and c = 0.521 nm) formed on {11-20}α planes, a certain number of γ” precipitate (hexagonal, a = 0.556 nm and c = 0.431 nm) formed on basal planes are also observed in the peak-aged alloy. Significantly, the basal γ” precipitate is more thermostable than prismatic β0′ precipitate in the present alloy. β0′ precipitates gradually coarsened and were even likely to transform into β1 phase (face centered cubic, a = 0.73 nm) with the increase of ageing time, which accordingly led to a gradual decrease in number density of precipitates and finally resulted in the decreased hardness and mechanical property in the over-aged alloys.
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- 2023
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49. Comparative immunological landscape between pre- and early-stage LUAD manifested as ground-glass nodules revealed by scRNA and scTCR integrated analysis
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Ziqi Wang, Li Yang, Wenqiang Wang, Huanhuan Zhou, Juan Chen, Zeheng Ma, Xiaoyan Wang, Quncheng Zhang, Haiyang Liu, Chao Zhou, Zhiping Guo, and Xiaoju Zhang
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Ground glass nodule ,Lung adenocarcinoma ,scRNA-seq ,ScTCR-seq ,Tumor microenvironment ,Medicine ,Cytology ,QH573-671 - Abstract
Abstract Background Mechanism underlying the malignant progression of precancer to early-stage lung adenocarcinoma (LUAD) as well as their indolence nature remains elusive. Methods Single-cell RNA sequencing (scRNA) with simultaneous T cell receptor (TCR) sequencing on 5 normal lung tissues, 3 precancerous and 4 early-stage LUAD manifested as pulmonary ground-glass nodules (GGNs) were performed. Results Through this integrated analysis, we have delineated five key modules that drive the malignant progression of early-stage LUAD in a disease stage-dependent manner. These modules are related to cell proliferation and metabolism, immune response, mitochondria, cilia, and cell adhesion. We also find that the tumor micro-environment (TME) of early-stage LUAD manifested as GGN are featured with regulatory T (Tregs) cells accumulation with three possible origins, and loss-functional state (decreased clonal expansion and cytotoxicity) of CD8 + T cells. Instead of exhaustion, the CD8 + T cells are featured with a shift to memory phenotype, which is significantly different from the late stage LUAD. Furthermore, we have identified monocyte-derived macrophages that undergo a lipid-phenotype transition and may contribute to the suppressive TME. Intense interaction between stromal cells, myeloid cells including lipid associated macrophages and LAMP3 + DCs, and lymphocytes were also characterized. Conclusions Our work provides new insight into the molecular and cellular mechanism underlying malignant progression of LUAD manifested as GGN, and pave way for novel immunotherapies for GGN. Video Abstract
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- 2023
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50. PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models
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Matthew H. Brush, Theodore C. Goldstein, Yvonne A. Evrard, Nathalie Conte, Melissa A. Haendel, Kevin C K Lloyd, Annette T. Byrne, Peter J. Houghton, Carlos Caldas, Amanda L. Christie, Frédéric Amant, Alana L. Welm, Stefan M. Pfister, Mark A. Murakami, Jos Jonkers, Patrick Dunn, Tin Oo Khor, Danielle Greenawalt, Jonathan R. Dry, David M. Weinstock, Sebastian Brabetz, Oscar M. Rueda, Zhiping Gu, Giorgio Inghirami, Dominic Clark, Olivier Duchamp, James M. Olson, Emilie Vinolo, Neal Goodwin, Kristopher K. Frese, Robert J. Wechsler-Reya, Terrence F. Meehan, Daniel S. Peeper, Marcel Kool, Enzo Medico, Jeremy Mason, Stephane Ferretti, Carol J. Bult, Atul J. Butte, S. John Weroha, Els Hermans, Kristel Kemper, Alejandra Bruna, Heidi Dowst, Je Kyung Seong, James H. Doroshow, Livio Trusolino, Michael T. Lewis, Jeffrey Wiser, Dale A. Begley, Steven B. Neuhauser, Helen Parkinson, Debra M. Krupke, Andrea Bertotti, Other departments, Obstetrics and Gynaecology, and ARD - Amsterdam Reproduction and Development
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0301 basic medicine ,Oncology ,endocrine system ,Cancer Research ,medicine.medical_specialty ,Patients ,endocrine system diseases ,Oncology and Carcinogenesis ,Bioinformatics ,digestive system ,Article ,Mice ,03 medical and health sciences ,Neoplasms ,Internal medicine ,medicine ,Drug response ,Animals ,Humans ,Oncology & Carcinogenesis ,Tumor xenograft ,Cancer ,Databases as Topic ,Disease Models, Animal ,Xenograft Model Antitumor Assays ,Mouse strain ,Animal ,Extramural ,business.industry ,nutritional and metabolic diseases ,medicine.disease ,Good Health and Well Being ,030104 developmental biology ,Disease Models ,Research studies ,business ,hormones, hormone substitutes, and hormone antagonists - Abstract
Patient-derived tumor xenograft (PDX) mouse models have emerged as an important oncology research platform to study tumor evolution, mechanisms of drug response and resistance, and tailoring chemotherapeutic approaches for individual patients. The lack of robust standards for reporting on PDX models has hampered the ability of researchers to find relevant PDX models and associated data. Here we present the PDX models minimal information standard (PDX-MI) for reporting on the generation, quality assurance, and use of PDX models. PDX-MI defines the minimal information for describing the clinical attributes of a patient's tumor, the processes of implantation and passaging of tumors in a host mouse strain, quality assurance methods, and the use of PDX models in cancer research. Adherence to PDX-MI standards will facilitate accurate search results for oncology models and their associated data across distributed repository databases and promote reproducibility in research studies using these models. Cancer Res; 77(21); e62–66. ©2017 AACR.
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- 2017
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