125 results on '"Zhigang Hong"'
Search Results
2. A novel screening method of DNA methylation biomarkers helps to improve the detection of colorectal cancer and precancerous lesions
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Yuan Li, Bin Li, Rou Jiang, Leen Liao, Chunting Zheng, Jie Yuan, Liuhong Zeng, Kunling Hu, Yuyu Zhang, Weijian Mei, Zhigang Hong, Binyi Xiao, Lingheng Kong, Kai Han, Jinghua Tang, Wu Jiang, Zhizhong Pan, Shenyan Zhang, and Peirong Ding
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cell‐free DNA ,colorectal cancer ,DNA methylation biomarkers ,noninvasive screening ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Colorectal cancer (CRC) is one of the most common malignancies, and early detection plays a crucial role in enhancing curative outcomes. While colonoscopy is considered the gold standard for CRC diagnosis, noninvasive screening methods of DNA methylation biomarkers can improve the early detection of CRC and precancerous lesions. Methods Bioinformatics and machine learning methods were used to evaluate CRC‐related genes within the TCGA database. By identifying the overlapped genes, potential biomarkers were selected for further validation. Methylation‐specific PCR (MSP) was utilized to identify the associated genes as biomarkers. Subsequently, a real‐time PCR assay for detecting the presence of neoplasia or cancer of the colon or rectum was established. This screening approach involved the recruitment of 978 participants from five cohorts. Results The genes with the highest specificity and sensitivity were Septin9, AXL4, and SDC2. A total of 940 participants were involved in the establishment of the final PCR system and the subsequent performance evaluation test. A multiplex TaqMan real‐time PCR system has been illustrated to greatly enhance the ability to detect precancerous lesions and achieved an accuracy of 87.8% (95% CI 82.9–91.5), a sensitivity of 82.7% (95% CI 71.8–90.1), and a specificity of 90.1% (95% CI 84.3–93.9). Moreover, the detection rate of precancerous lesions of this assay reached 55.0% (95% CI 38.7–70.4). Conclusion The combined detection of the methylation status of SEPT9, SDC2, and ALX4 in plasma holds the potential to further enhance the sensitivity of CRC detection.
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- 2023
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3. Lymphovascular invasion represents a superior prognostic and predictive pathological factor of the duration of adjuvant chemotherapy for stage III colon cancer patients
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Linjie Zhang, Yuxiang Deng, Songran Liu, Weili Zhang, Zhigang Hong, Zhenhai Lu, Zhizhong Pan, Xiaojun Wu, and Jianhong Peng
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Lymphovascular invasion ,Perineural invasion ,Adjuvant chemotherapy ,Stage III colon cancer ,Prognosis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Lymphovascular invasion (LVI) and perineural invasion (PNI) can indicate poor survival outcomes in colorectal cancer, but few studies have focused on stage III colon cancer. The current study aimed to confirm the prognostic value of LVI and PNI and identify patients who could benefit from a complete duration of adjuvant chemotherapy based on the two pathological factors. Methods We enrolled 402 consecutive patients with stage III colon cancer who received colon tumor resection from November 2007 to June 2016 at Sun Yat-sen University Cancer Center. Survival analyses were performed by using Kaplan–Meier method with log-rank tests. Risk factors related to disease-free survival (DFS) and overall survival (OS) were identified through Cox proportional hazards analysis. Results 141 (35.1%) patients presented with LVI, and 108 (26.9%) patients with PNI. The LVI-positive group was associated with poorer 3-year DFS (86.5% vs. 76.3%, P = 0.001) and OS (96.0% vs. 89.1%, P = 0.003) rates compared with the LVI-negative group. The PNI-positive group showed a worse outcome compared with the PNI-negative group in 3-year DFS rate (72.5% vs. 86.7%, P
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- 2023
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4. Conversion therapy with the intent to perform radical local treatment may not be suitable for patients with 10 or more liver metastases from colorectal cancer
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Junzhong Lin, Hui Sun, Weili Zhang, Zhigang Hong, Zhenhai Lu, Zhizhong Pan, Zhenlin Hou, and Jianhong Peng
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The number of colorectal cancer liver metastases (CRLMs) is usually considered a contradictory indicator to surgical resection. However, some patients with initially unresectable CRLMs can receive radical local treatment after conversion therapy. This study aimed to evaluate the effect of radical local treatment after conversion therapy and the prognosis of patients with more than 10 initially unresectable CRLMs. Methods Data for a total of 229 patients with initially unresectable CRLMs were retrospectively reviewed between December 2012 and January 2020. Among these patients, 107 had ≥10 CRLMs, and 122 had
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- 2022
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5. IL-1β suppression of VE-cadherin transcription underlies sepsis-induced inflammatory lung injury
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Shiqin Xiong, Zhigang Hong, Long Shuang Huang, Yoshikazu Tsukasaki, Saroj Nepal, Anke Di, Ming Zhong, Wei Wu, Zhiming Ye, Xiaopei Gao, Gadiparthi N. Rao, Dolly Mehta, Jalees Rehman, and Asrar B. Malik
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Medicine - Published
- 2023
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6. Research Overview on Unconventional Pollutant Detection and Cooperative Control Technology of Flue Gas in Coal-fired Power Plant
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Zhigang HONG, Yang ZHANG, Yongsheng LIU, and Yue ZHU
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coal-fired power plant ,flue gas ,unconventional pollutant ,detection ,control ,Applications of electric power ,TK4001-4102 ,Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 ,Science - Abstract
With the continuous improvement of national environmental protection requirements, in response to the call of national sustainable development policy, the treatment of unconventional pollutant (such as SO3, Hg, condensable particulate matter (CPM) etc.) in coal-fired flue gas has gradually been put on the agenda. Researchers change the focus from the removal of conventional pollutants to unconventional pollutants. Based on the characteristics of unconventional pollutants in coal-fired flue gas, the advantages, disadvantages and applicable conditions of different detection technologies for unconventional pollutants were analyzed. And in the new environment protection situation, the research and application status of various environmental protection equipment to control unconventional pollutants was introduced. The work can provide reference for further study of unconventional pollutant control in coal-fired power plants.
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- 2020
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7. Endothelial heterogeneity across distinct vascular beds during homeostasis and inflammation
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Ankit Jambusaria, Zhigang Hong, Lianghui Zhang, Shubhi Srivastava, Arundhati Jana, Peter T Toth, Yang Dai, Asrar B Malik, and Jalees Rehman
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endothelial heterogeneity ,inflammation ,vascular biology ,translatome ,tissue specificity ,systems biology ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Blood vessels are lined by endothelial cells engaged in distinct organ-specific functions but little is known about their characteristic gene expression profiles. RNA-Sequencing of the brain, lung, and heart endothelial translatome identified specific pathways, transporters and cell-surface markers expressed in the endothelium of each organ, which can be visualized at http://www.rehmanlab.org/ribo. We found that endothelial cells express genes typically found in the surrounding tissues such as synaptic vesicle genes in the brain endothelium and cardiac contractile genes in the heart endothelium. Complementary analysis of endothelial single cell RNA-Seq data identified the molecular signatures shared across the endothelial translatome and single cell transcriptomes. The tissue-specific heterogeneity of the endothelium is maintained during systemic in vivo inflammatory injury as evidenced by the distinct responses to inflammatory stimulation. Our study defines endothelial heterogeneity and plasticity and provides a molecular framework to understand organ-specific vascular disease mechanisms and therapeutic targeting of individual vascular beds.
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- 2020
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8. A computational approach to identify cellular heterogeneity and tissue-specific gene regulatory networks
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Ankit Jambusaria, Jeff Klomp, Zhigang Hong, Shahin Rafii, Yang Dai, Asrar B. Malik, and Jalees Rehman
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Gene set enrichment ,Systems biology ,Tissue specificity ,Gene expression ,Transcriptional networks ,Transcription factor binding motifs ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The heterogeneity of cells across tissue types represents a major challenge for studying biological mechanisms as well as for therapeutic targeting of distinct tissues. Computational prediction of tissue-specific gene regulatory networks may provide important insights into the mechanisms underlying the cellular heterogeneity of cells in distinct organs and tissues. Results Using three pathway analysis techniques, gene set enrichment analysis (GSEA), parametric analysis of gene set enrichment (PGSEA), alongside our novel model (HeteroPath), which assesses heterogeneously upregulated and downregulated genes within the context of pathways, we generated distinct tissue-specific gene regulatory networks. We analyzed gene expression data derived from freshly isolated heart, brain, and lung endothelial cells and populations of neurons in the hippocampus, cingulate cortex, and amygdala. In both datasets, we found that HeteroPath segregated the distinct cellular populations by identifying regulatory pathways that were not identified by GSEA or PGSEA. Using simulated datasets, HeteroPath demonstrated robustness that was comparable to what was seen using existing gene set enrichment methods. Furthermore, we generated tissue-specific gene regulatory networks involved in vascular heterogeneity and neuronal heterogeneity by performing motif enrichment of the heterogeneous genes identified by HeteroPath and linking the enriched motifs to regulatory transcription factors in the ENCODE database. Conclusions HeteroPath assesses contextual bidirectional gene expression within pathways and thus allows for transcriptomic assessment of cellular heterogeneity. Unraveling tissue-specific heterogeneity of gene expression can lead to a better understanding of the molecular underpinnings of tissue-specific phenotypes.
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- 2018
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9. Hyperpigmentation on the Palm in a Three-year-old Girl: A Quiz
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Gongjun Xu, Huan Mei, Zhigang Hong, Suying Feng, Jinglun Xu, Jinxian Fang, Xianghua Lv, and Xiaohua Zhou
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Dermatology ,RL1-803 - Published
- 2019
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10. DNA ploidy and stroma predicted the risk of recurrence in low-risk stage III colorectal cancer
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Yuan Li, Leen Liao, Lingheng Kong, Wu Jiang, Jinghua Tang, Kai Han, Zhenlin Hou, Chenzhi Zhang, Chi Zhou, Linjie Zhang, Qiaoqi Sui, Binyi Xiao, Weijian Mei, Yanbo Xu, Jiehai Yu, Zhigang Hong, Zhizhong Pan, and Peirong Ding
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Cancer Research ,Oncology ,General Medicine - Abstract
For clinically low-risk stage III colorectal cancer, the decision on cycles of adjuvant chemotherapy after surgery is disputed. The present study investigates the use of additional biomarkers of ploidy and stroma-ratio(PS) to stratify patients with low-risk stage III colorectal cancer, providing a basis for individualized treatment in the future.This study retrospectively enrolled 198 patients with clinical-low-risk stage III colorectal cancer (T1-3N1M0) and analyzed the DNA ploidy and stroma ratio of FFPE tumor tissues. The patients were divided into PS-low-risk group (Diploidy or Low-stroma) and PS-high-risk group (Non-diploid and High-stroma). For survival analyses, Kaplan-Meier and Cox regression models were used.The results showed that the 5-year DFS of the PS-high-risk group was significantly lower than that in the PS-low-risk group (78.6 vs. 91.2%, HR = 2.606 [95% CI: 1.011-6.717], P = 0.039). Besides, in the PS-low-risk group, the 5 year OS (98.2 vs. 86.7%, P = 0.022; HR = 5.762 [95% CI: 1.281-25.920]) and DFS (95.6, vs 79.9%, P = 0.019; HR = 3.7 [95% CI: 1.24-11.04]) of patients received adjuvant chemotherapy for 3 months were significantly higher than those received adjuvant chemotherapy for 3 months. We also found that the PS could stratify the prognosis of patients with dMMR tumors. The 5-year OS (96.3 vs 71.4%, P = 0.037) and DFS (92.6 vs 57.1%, P = 0.015) were higher in the PS-low-risk dMMR patients than those in the PS-high-risk dMMR patients.In this study, we found that PS can predict the prognosis of patients with stage III low-risk CRC. Besides, it may guide the decision on postoperative adjuvant chemotherapy.
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- 2022
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11. Albumin Nanoparticle Endocytosing Subset of Neutrophils for Precision Therapeutic Targeting of Inflammatory Tissue Injury
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Kurt Bachmaier, Andrew Stuart, Abhalaxmi Singh, Amitabha Mukhopadhyay, Sreeparna Chakraborty, Zhigang Hong, Li Wang, Yoshikazu Tsukasaki, Mark Maienschein-Cline, Balaji B. Ganesh, Prasad Kanteti, Jalees Rehman, and Asrar B. Malik
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Inflammation ,Mice ,Neutrophils ,Albumins ,General Engineering ,Animals ,Nanoparticles ,General Physics and Astronomy ,General Materials Science ,Endocytosis - Abstract
The complex involvement of neutrophils in inflammatory diseases makes them intriguing but challenging targets for therapeutic intervention. Here, we tested the hypothesis that varying endocytosis capacities would delineate functionally distinct neutrophil subpopulations that could be specifically targeted for therapeutic purposes. By using uniformly sized (∼120 nm in diameter) albumin nanoparticles (ANP) to characterize mouse neutrophils
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- 2022
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12. Efficacy of PD-1 Inhibitors for Colorectal Cancer and Polyps in Lynch Syndrome Patients
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Jiehai Yu, Binyi Xiao, Jinghua Tang, Dandan Li, Fang Wang, Ya Ding, Kai Han, Lingheng Kong, Yihong Ling, Weijian Mei, Zhigang Hong, Leen Liao, Wanjun Yang, Zhizhong Pan, Xiaoshi Zhang, Wu Jiang, and Peirong Ding
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- 2023
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13. Parallel Activation of Src and Hif1α Increases Localized Glycolytic ATP Generation for Re-assembly of Endothelial Adherens Junctions
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Li Wang, Priyanka Gajwani, Pallavi Chaturvedi, Zhigang Hong, Zijing Ye, Gregory J. Schwarz, Nicole M. Pohl-Avila, Anne-Marie Ray, Sarah Krantz, Peter T Toth, Deborah E. Leckband, Andrei Karginov, and Jalees Rehman
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Endothelial adherens junctions (AJs) are critical for the regulation of vascular barrier integrity and undergo dis-assembly during inflammatory injury, thus causing vascular leakiness. AJ re-assembly is thus necessary for restoration of the endothelial barrier following the initial injury. Here we examine the metabolic underpinnings that drive restoration of vascular integrity. In response to inflammatory stimuli, the glycolysis regulatory enzyme PFKFB3 is activated, resulting in a rapid and sustained increase of intracellular glycolytic ATP, especially in the proximity of AJs at the plasma membrane. We engineered a novel chemo-genetic construct (RapT) which allowed for precise temporal control of PFKFB3 recruitment to the plasma membrane. Activation of RapT by rapamycin during the barrier restoration phase increased regional ATP and accelerated AJ re-assembly. Mechanistically, we observed that PFKFB3 is activated through two modes. Src-mediated post-translational phosphorylation rapidly increases PFKFB3 activity. Using another chemo-genetic approach to temporally control Src activity, we found that Src activates PFKFB3 by binding to and phosphorylating it at residues Y175, Y334, and Y363. Tyrosine-phospho-deficient mutants of PFKFB3 at these residues block the glycolytic activation upon inflammatory stimuli. In parallel, elevated reactive oxygen species generated during inflammatory stimulation create pockets of regional hypoxia and allow for increased Hif1α-mediated transcription of PFKFB3, leading to sustained glycolytic activation. Moreover, inhibition of PFKFB3 delays AJ reassembly and restoration of vascular integrity both in vitro and in vivo. In conclusion, we show that while inflammatory activation acutely compromises the endothelial barrier, inflammatory signaling also concomitantly generates a metabolic milieu in anticipation of the subsequent re-assembly of AJs and restoration of the vascular barrier.
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- 2022
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14. Three-dimensional research on detecting ice-snow resource based on HRS data.
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Zhigang Hong, Nan Cong, and Li Zhang
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- 2010
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15. Analysis on Classified Precision of Land Use Using Remote Sensing Images in Different Temporal.
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Zhigang Hong, Nan Cong, and Xinming Tang
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- 2009
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16. Epigenetic Metabolic Reprogramming of Right Ventricular Fibroblasts in Pulmonary Arterial Hypertension
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Charles C.T. Hindmarch, François Potus, Lian Tian, Zhigang Hong, Danchen Wu, Jeffrey Mewburn, Steeve Provencher, Kuang-Hueih Chen, Gopinath Sutendra, Asish Dasgupta, Shelby Kutty, Yuan Yuan Zhao, Sébastien Bonnet, Stephen L. Archer, and Patricia D.A. Lima
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DNA (Cytosine-5-)-Methyltransferase 1 ,Male ,0301 basic medicine ,RM ,medicine.medical_specialty ,Pyruvate dehydrogenase kinase ,Physiology ,Heart Ventricles ,Hypertension, Pulmonary ,Metabolic reprogramming ,030204 cardiovascular system & hematology ,Mitochondrial Dynamics ,Mitochondria, Heart ,Article ,Epigenesis, Genetic ,Rats, Sprague-Dawley ,03 medical and health sciences ,0302 clinical medicine ,Transforming Growth Factor beta ,Fibrosis ,Internal medicine ,medicine ,Animals ,Epigenetics ,Myofibroblasts ,Cells, Cultured ,Monocrotaline ,business.industry ,Pyruvate Dehydrogenase Acetyl-Transferring Kinase ,Metabolism ,Hypoxia-Inducible Factor 1, alpha Subunit ,medicine.disease ,Ventricular fibrosis ,Rats ,030104 developmental biology ,Endocrinology ,Cardiology and Cardiovascular Medicine ,business - Abstract
Rationale: Right ventricular (RV) fibrosis in pulmonary arterial hypertension contributes to RV failure. While RV fibrosis reflects changes in the function of resident RV fibroblasts (RVfib), these cells are understudied. Objective: Examine the role of mitochondrial metabolism of RVfib in RV fibrosis in human and experimental pulmonary arterial hypertension. Methods and Results: Male Sprague-Dawley rats received monocrotaline (MCT; 60 mg/kg) or saline. Drinking water containing no supplement or the PDK (pyruvate dehydrogenase kinase) inhibitor dichloroacetate was started 7 days post-MCT. At week 4, treadmill testing, echocardiography, and right heart catheterization were performed. The effects of PDK activation on mitochondrial dynamics and metabolism, RVfib proliferation, and collagen production were studied in RVfib in cell culture. Epigenetic mechanisms for persistence of the profibrotic RVfib phenotype in culture were evaluated. PDK expression was also studied in the RVfib of patients with decompensated RV failure (n=11) versus control (n=7). MCT rats developed pulmonary arterial hypertension, RV fibrosis, and RV failure. MCT-RVfib (but not left ventricular fibroblasts) displayed excess mitochondrial fission and had increased expression of PDK isoforms 1 and 3 that persisted for >5 passages in culture. PDK-mediated decreases in pyruvate dehydrogenase activity and oxygen consumption rate were reversed by dichloroacetate (in RVfib and in vivo) or siRNA targeting PDK 1 and 3 (in RVfib). These interventions restored mitochondrial superoxide and hydrogen peroxide production and inactivated HIF (hypoxia-inducible factor)-1α, which was pathologically activated in normoxic MCT-RVfib. Redox-mediated HIF-1α inactivation also decreased the expression of TGF-β1 (transforming growth factor-beta-1) and CTGF (connective tissue growth factor), reduced fibroblast proliferation, and decreased collagen production. HIF-1α activation in MCT-RVfib reflected increased DNMT (DNA methyltransferase) 1 expression, which was associated with a decrease in its regulatory microRNA, miR-148b-3p. In MCT rats, dichloroacetate, at therapeutic levels in the RV, reduced phospho-pyruvate dehydrogenase expression, RV fibrosis, and hypertrophy and improved RV function. In patients with pulmonary arterial hypertension and RV failure, RVfib had increased PDK1 expression. Conclusions: MCT-RVfib manifest a DNMT1-HIF-1α-PDK–mediated, chamber-specific, metabolic memory that promotes collagen production and RV fibrosis. This epigenetic mitochondrial-metabolic pathway is a potential antifibrotic therapeutic target.
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- 2020
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17. Alveolar Stretch Activation of Endothelial Piezo1 Protects Adherens Junctions and Lung Vascular Barrier
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Asrar B. Malik, Wei Wu, Zhigang Hong, Xiaopei Gao, Ming Zhong, Yulia Komarova, Jalees Rehman, Hojin Kang, and Shiqin Xiong
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0301 basic medicine ,Pulmonary and Respiratory Medicine ,biology ,Endothelium ,Chemistry ,Clinical Biochemistry ,Vascular permeability ,Calpain ,Cell Biology ,Lung injury ,Cell biology ,Adherens junction ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,030228 respiratory system ,Downregulation and upregulation ,biology.protein ,medicine ,Mechanotransduction ,Molecular Biology ,Proto-oncogene tyrosine-protein kinase Src - Abstract
Disruption of alveolar-capillary barriers is a major complication of high-volume mechanical ventilation referred to as "ventilator-induced lung injury." The stretching force in alveoli is transmitted to endothelial cells, increasing the tension on underlying endothelial plasma membrane. The mechanosensor Piezo1, a plasma membrane cation channel, was inducibly deleted in endothelial cells of mice (Piezo1iEC-/-), which allowed us to study its role in regulating the endothelial barrier response to alveolar stretch. We observed significant increase in lung vascular permeability in Piezo1iEC-/- mice as compared with control Piezo1fl/fl mice in response to high-volume mechanical ventilation. We also observed that human lung endothelial monolayers depleted of Piezo1 and exposed to cyclic stretch had increased permeability. We identified the calcium-dependent cysteine protease calpain as a downstream target of Piezo1. Furthermore, we showed that calpain maintained stability of the endothelial barrier in response to mechanical stretch by cleaving Src kinase, which was responsible for disassembling endothelial adherens junctions. Pharmacological activation of calpain caused Src cleavage and thereby its inactivation, and it restored the disrupted lung endothelial barrier seen in Piezo1iEC-/- mice undergoing high-volume mechanical ventilation. Our data demonstrate that downregulation of Piezo1 signaling in endothelium is a critical factor in the pathogenesis of ventilator-induced lung injury, and thus augmenting Piezo1 expression or pharmacologically activating Piezo1 signaling may be an effective therapeutic strategy.
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- 2020
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18. Endothelial cell Piezo1 mediates pressure-induced lung vascular hyperpermeability via disruption of adherens junctions
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Zhigang Hong, Shiqin Xiong, Anke Di, Emily E. Friedrich, Ming Zhong, Yulia Komarova, Asrar B. Malik, and Jalees Rehman
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Male ,0301 basic medicine ,Medical Sciences ,Spider Venoms ,Blood Pressure ,Mechanotransduction, Cellular ,Ion Channels ,Mice ,0302 clinical medicine ,Edema ,Gene Knock-In Techniques ,Lung ,Microvessel ,Cells, Cultured ,Mice, Knockout ,Multidisciplinary ,biology ,Chemistry ,Calpain ,Adherens Junctions ,Biological Sciences ,Piezo1 ,Cadherins ,Pulmonary edema ,3. Good health ,Cell biology ,Endothelial stem cell ,medicine.anatomical_structure ,Intercellular Signaling Peptides and Proteins ,Female ,medicine.symptom ,Respiratory Insufficiency ,Primary Cell Culture ,Pulmonary Edema ,Capillary Permeability ,Adherens junction ,03 medical and health sciences ,Microscopy, Electron, Transmission ,Antigens, CD ,endothelial ,Hydrostatic Pressure ,medicine ,Animals ,Humans ,Arterial Pressure ,PIEZO1 ,Endothelial Cells ,medicine.disease ,Disease Models, Animal ,030104 developmental biology ,Microvessels ,biology.protein ,Endothelium, Vascular ,permeability ,030217 neurology & neurosurgery - Abstract
Significance Increased hydrostatic pressure in lung capillaries experienced during high altitude, head trauma, and left heart failure can lead to disruption of lung endothelial barrier and edema formation. We identified Piezo1 as a mechanical sensor responsible for endothelial barrier breakdown (barotrauma) secondary to reduced expression of the endothelial adherens junction proteins VE-cadherin, β-catenin, and p120-catenin. Endothelial-specific deletion or pharmacological inhibition of Piezo1 prevented lung capillary leakage, suggesting a therapeutic approach for preventing edema and associated lung failure., Increased pulmonary microvessel pressure experienced in left heart failure, head trauma, or high altitude can lead to endothelial barrier disruption referred to as capillary “stress failure” that causes leakage of protein-rich plasma and pulmonary edema. However, little is known about vascular endothelial sensing and transduction of mechanical stimuli inducing endothelial barrier disruption. Piezo1, a mechanosensing ion channel expressed in endothelial cells (ECs), is activated by elevated pressure and other mechanical stimuli. Here, we demonstrate the involvement of Piezo1 in sensing increased lung microvessel pressure and mediating endothelial barrier disruption. Studies were made in mice in which Piezo1 was deleted conditionally in ECs (Piezo1iΔEC), and lung microvessel pressure was increased either by raising left atrial pressure or by aortic constriction. We observed that lung endothelial barrier leakiness and edema induced by raising pulmonary microvessel pressure were abrogated in Piezo1iΔEC mice. Piezo1 signaled lung vascular hyperpermeability by promoting the internalization and degradation of the endothelial adherens junction (AJ) protein VE-cadherin. Breakdown of AJs was the result of activation of the calcium-dependent protease calpain and degradation of the AJ proteins VE-cadherin, β-catenin, and p120-catenin. Deletion of Piezo1 in ECs or inhibition of calpain similarly prevented reduction in the AJ proteins. Thus, Piezo1 activation in ECs induced by elevated lung microvessel pressure mediates capillary stress failure and edema formation secondary to calpain-induced disruption of VE-cadherin adhesion. Inhibiting Piezo1 signaling may be a useful strategy to limit lung capillary stress failure injury in response to elevated vascular pressures.
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- 2019
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19. Computer-Vision Stabilized Intravital Imaging Reveals Lung Capillary Neutrophil Dynamics Crucial for Lung Host-Defense Function
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Kurt Bachmaier, Jaehyung Cho, Bhagwati Joshi, Saroj Nepal, Yoshikazu Tsukasaki, Dolly Mehta, Sandra Pinho, Peter T. Toth, Chinnaswamy Tiruppathi, Asrar B. Malik, Jalees Rehman, Gary Mo, Matthias Gunzer, Jagdish Chandra Joshi, and Zhigang Hong
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Innate immune system ,Lung ,business.industry ,Chemistry ,Dynamics (mechanics) ,hemic and immune systems ,Intravital Imaging ,Defective phagocytosis ,medicine.anatomical_structure ,In vivo ,Polymorphonuclear Neutrophils ,medicine ,Computer vision ,Artificial intelligence ,business ,Function (biology) - Abstract
Polymorphonuclear neutrophils (PMN) are highly dynamic innate immune cells which are essential for lung host defense. However, in vivo intravital imaging in moving organs such as the lung remains challenging due to motion artifacts. Here we describe a novel intravital imaging method with high-throughput analytical capability based on a computer vision stabilization algorithm, Computer-vision-Assisted STabilized intravital imaging (CASTii). The sub-micron precision of this approach enables analysis of compartmentalized intravital PMN dynamics. We quantified in real-time a novel patrolling function of lung intracapillary circulating PMN. We also describe the dynamics of intracapillary PMN pooling (marginated PMN pool) using direct imaging of PMNs. The pool was formed by repeated catch-and-release kinetics involving PMN deformation inside microvessels during the passage of PMNs in vessels. We observed rapid PMN recruitment into the lung tissue compartments from pooled PMNs in response to alveolar chemoattract exposure. In contrast, endotoxemia-induced intracapillary sequestration of PMN impaired PMN transmigration into the alveolar space and defective phagocytosis of live bacteria. Intravital imaging of PMN dynamics with CASTii provides fundamental insights into host-defense functions of lung capillary PMN.
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- 2021
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20. Clinical characteristics and prognostic factors of colorectal cancer patients with ovarian metastasis: a multicenter retrospective study
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Rui Guo, Zhigang Hong, Wei Zhang, Ziqiang Wang, Rui Zhang, Chao Fang, Xiaofen Li, Pei-Rong Ding, Yongyang Yu, Peng Liu, Wenjian Meng, and Meng Qiu
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Oncology ,medicine.medical_specialty ,China ,Multivariate analysis ,Colorectal cancer ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Retrospective Studies ,Ovarian Neoplasms ,Proportional hazards model ,business.industry ,Gastroenterology ,Retrospective cohort study ,Hepatology ,Nomogram ,Middle Aged ,medicine.disease ,Prognosis ,Primary tumor ,030220 oncology & carcinogenesis ,030211 gastroenterology & hepatology ,Female ,business ,Colorectal Neoplasms - Abstract
As a kind of secondary tumor of the ovary, ovarian metastasis from colorectal cancer (OMCRC) happens rarely. Prognostic factors of OMCRC are still undetermined. This study was conducted to analyze clinical characteristics and prognostic factors of OMCRC patients. Data of patients with OMCRC were collected retrospectively from four large-capacity hospitals in China. Kaplan-Meier method was applied to estimate disease-specific overall survival (OS), and multivariate Cox regression analysis was used to identify prognostic factors. A novel nomogram was developed to estimate individual survival probability, whose performance was internally validated using concordance index (C-index) and calibration curve. Totally, 162 cases were eligible, with a median age at diagnosis of 49 years old. The median size of ovarian metastases was 9.0 cm (95% CI: 8.5–10.4 cm). 93.8% of patients received surgery of ovarian metastases. Median time from CRC diagnosis to metachronous ovarian metastasis was 13.0 months (95% CI: 13.5–17.7 months). Median OS after ovarian metastasis diagnosis was 26.0 months (95% CI: 22.3–29.7 months). Integrating univariate and multivariate analyses, eight factors (including age, menopausal status, primary tumor location, N stage of primary tumor, surgery of primary tumor, differentiation grade, bilateral metastasis, and systemic chemotherapy) were used to develop a novel nomogram, with a C-index of 0.65 (95% CI: 0.595–0.705). Calibration curves indicated relatively good agreement between predicted and actual survival. This nomogram could be a promising tool to help clinicians to estimate individual survival outcome of patients with OMCRC. Further study is warranted to validate the practicality of this model.
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- 2021
21. The angiocrine Rspondin3 instructs interstitial macrophage transition via metabolic-epigenetic reprogramming and resolves inflammatory injury
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Zhigang Hong, Cary Huang, Sreeparna Chakraborty, Balaji B. Ganesh, Anke Di, Xiaopei Gao, Yoshikazu Tsukasaki, Long Shuang Huang, Lissette Magana, Bisheng Zhou, Li Wang, Asrar B. Malik, and Jalees Rehman
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0301 basic medicine ,Endothelium ,Immunology ,Fluorescent Antibody Technique ,Mice, Transgenic ,Article ,Epigenesis, Genetic ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Immunology and Allergy ,Macrophage ,Humans ,Epigenetics ,Lung ,Inflammation ,Mice, Knockout ,Glutaminolysis ,Chemistry ,Macrophages ,Wnt signaling pathway ,Endothelial Cells ,Lung Injury ,Cellular Reprogramming ,Phenotype ,Cell biology ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,Disease Susceptibility ,Energy Metabolism ,Thrombospondins ,Reprogramming ,Biomarkers ,030215 immunology - Abstract
Macrophages demonstrate remarkable plasticity that is essential for host defense and tissue repair. The tissue niche imprints macrophage identity, phenotype and function. The role of vascular endothelial signals in tailoring the phenotype and function of tissue macrophages remains unknown. The lung is a highly vascularized organ and replete with a large population of resident macrophages. We found that, in response to inflammatory injury, lung endothelial cells release the Wnt signaling modulator Rspondin3, which activates β-catenin signaling in lung interstitial macrophages and increases mitochondrial respiration by glutaminolysis. The generated tricarboxylic acid cycle intermediate α-ketoglutarate, in turn, serves as the cofactor for the epigenetic regulator TET2 to catalyze DNA hydroxymethylation. Notably, endothelial-specific deletion of Rspondin3 prevented the formation of anti-inflammatory interstitial macrophages in endotoxemic mice and induced unchecked severe inflammatory injury. Thus, the angiocrine–metabolic–epigenetic signaling axis specified by the endothelium is essential for reprogramming interstitial macrophages and dampening inflammatory injury. The angiocrine Rspondin3 is produced by endothelial cells (ECs) and controls growth and development. Malik and colleagues show that lung ECs produce Rspondin3 following injury and specifically direct interstitial macrophages into an anti-inflammatory and wound-healing program.
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- 2020
22. High-loading Gα 13 -binding EXE peptide nanoparticles prevent thrombosis and protect mice from cardiac ischemia/reperfusion injury
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Chang Liu, Aiming Pang, Paola Leon Plata, Ying Liu, Can Wang, Ni Cheng, M. Keegan Delaney, Kasim K. Kabirov, Minyi Gu, Claire W Chang, Yujie Cui, Yaping Zhang, Aleksander V. Lyubimov, Asrar B. Malik, Randal A. Skidgel, Jalees Rehman, Yanyan Bai, Zhigang Hong, Xiaoping Du, and Alexander Zakharov
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0301 basic medicine ,Aspirin ,business.industry ,Ischemia ,General Medicine ,030204 cardiovascular system & hematology ,Pharmacology ,medicine.disease ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,P2Y12 ,Cangrelor ,chemistry ,In vivo ,Hemostasis ,Antithrombotic ,medicine ,business ,Reperfusion injury ,medicine.drug - Abstract
Inefficient delivery is a major obstacle to the development of peptide-based drugs targeting the intracellular compartment. We recently showed that selectively inhibiting integrin outside-in signaling using a peptide (mP6) derived from the Gα13-binding ExE motif within the integrin β3 cytoplasmic domain had antithrombotic effects. Here, we engineered lipid-stabilized, high-loading peptide nanoparticles (HLPN), in which a redesigned ExE peptide (M3mP6) constituted up to 70% of the total nanoparticle molarity, allowing efficient in vivo delivery. We observed that M3mP6 HLPN inhibited occlusive thrombosis more potently than a clopidogrel/aspirin combination without adverse effects on hemostasis in rodents. Furthermore, M3mP6 HLPN synergized with P2Y12 receptor inhibitors or the clopidogrel/aspirin combination in preventing thrombosis, without exacerbating hemorrhage. M3mP6 HLPN also inhibited intravascular coagulation more potently than the P2Y12 inhibitor cangrelor. Postischemia injection of M3mP6 HLPN protected the heart from myocardial ischemia-reperfusion injury in a mouse model. This study demonstrates an efficient in vivo peptide delivery strategy for a therapeutic that not only efficaciously prevented thrombosis with minimal bleeding risk but also protected from myocardial ischemia-reperfusion injury in mice.
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- 2020
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23. Comparisons of screening strategies for identifying Lynch syndrome among patients with MLH1-deficient colorectal cancer
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Pei-Rong Ding, Qiaoqi Sui, E. Xie, Jinghua Tang, Dingxin Liu, Binyi Xiao, Weirong Li, Jun Luo, Zhigang Hong, Lin-Lin Mao, Zhizhong Pan, Wu Jiang, and Lingheng Kong
- Subjects
Oncology ,Male ,Proto-Oncogene Proteins B-raf ,medicine.medical_specialty ,congenital, hereditary, and neonatal diseases and abnormalities ,Colorectal cancer ,Population ,MLH1 ,Article ,Internal medicine ,Genetics ,medicine ,Humans ,Genetic Testing ,education ,neoplasms ,Genetics (clinical) ,Genetic testing ,education.field_of_study ,medicine.diagnostic_test ,business.industry ,nutritional and metabolic diseases ,Methylation ,DNA Methylation ,Middle Aged ,medicine.disease ,Colorectal Neoplasms, Hereditary Nonpolyposis ,Lynch syndrome ,digestive system diseases ,DNA methylation ,Mutation ,Costs and Cost Analysis ,DNA mismatch repair ,Female ,business ,MutL Protein Homolog 1 - Abstract
BRAF and MLH1 promoter methylation testings have been proven effective prescreens for Lynch Syndrome. We aimed to compare different screening strategies for Lynch Syndrome in patients with MLH1(-) CRC. Patients with MLH1(-) CRC who had been tested for BRAF mutation and germline variants of DNA mismatch repair genes were included. We compared the sensitivities and specificities for identifying Lynch Syndrome and the cost-effectiveness of four screening approaches that used the following tests as prescreens: BRAF testing, MLH1 methylation testing, MLH1 methylation & BRAF testing, and MLH1 methylation testing & Revised Bethesda Criteria. Of 109 patients included, 23 (21.1%) were Lynch Syndrome patients. BRAF mutation and MLH1 methylation occurred in 6 (5.5%) and 40 (36.7%) patients, respectively. The sensitivity for identifying Lynch syndrome of BRAF testing was 100%, but the specificity was only 7%. MLH1 methylation testing had a lower sensitivity than BRAF testing (97.5% vs 100%), but had a markedly higher specificity (45.3% vs 7%). The combination of the two testings had a slightly higher specificity than MLH1 methylation testing alone (47.7% vs 45.3%). The MLH1 methylation testing approach had a 10% lower cost of identifying MLH1(-) Lynch syndrome carriers per case than universal genetic testing, but it missed 4.5% of patients. BRAF and MLH1 promoter methylation testings as prescreens for Lynch syndrome are less effective in Chinese patients with MLH1(-) CRC than in their Western counterparts. Universal genetic testing could be considered an up-front option for this population.
- Published
- 2020
24. Selective Nanotherapeutic Targeting of the Neutrophil Subset Mediating Inflammatory Injury
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Andrew B. Stuart, Mark Maienschein-Cline, Prasad Kanteti, Sreeparna Chakraborty, Asrar B. Malik, Abhalaxmi Singh, Jalees Rehman, Yoshikazu Tsukasaki, Xiaopei Gao, Amitabha Mukhopadhyay, Kurt Bachmaier, and Zhigang Hong
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Drug ,Piceatannol ,chemistry.chemical_classification ,Reactive oxygen species ,Chemokine ,biology ,business.industry ,media_common.quotation_subject ,Syk ,Lung injury ,chemistry.chemical_compound ,Downregulation and upregulation ,chemistry ,Respiratory failure ,Immunology ,biology.protein ,Medicine ,business ,media_common - Abstract
Inflammatory tissue injury such as acute lung injury (ALI) is a disorder that leads to respiratory failure, a major cause of morbidity and mortality worldwide. Excessive neutrophil influx is a critical pathogenic factor in the development of ALI. Here, we identify the subset of neutrophils that is responsible for ALI and lethality in polymicrobial sepsis. The pro-inflammatory neutrophil subpopulation was characterized by its unique ability to endocytose albumin nanoparticles (ANP), upregulation of pro-inflammatory cytokines and chemokines as well as the excessive production of reactive oxygen species (ROS) in models of endotoxemia and septicemia. ANP delivery of the drug piceatannol, a spleen tyrosine kinase (Syk) inhibitor, to the susceptible subset of neutrophils, prevented ALI and mortality in mice subjected to polymicrobial infection. Targeted inhibition of Syk in ANP-susceptible neutrophils had no detrimental effect on neutrophil-dependent host defense because the subset of ANPlowneutrophils effectively controlled polymicrobial infection. The results show that neutrophil heterogeneity can be leveraged therapeutically to prevent ALI without compromising host defense.
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- 2020
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25. IL-1β suppression of VE-cadherin transcription underlies sepsis-induced inflammatory lung injury
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Dolly Mehta, Asrar B. Malik, Zhigang Hong, Xiaopei Gao, Jalees Rehman, Wei Wu, Saroj Nepal, Ming Zhong, Anke Di, Yoshikazu Tsukasaki, Long Shuang Huang, Gadiparthi N. Rao, Zhiming Ye, and Shiqin Xiong
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0301 basic medicine ,ARDS ,Endothelium ,Transcription, Genetic ,medicine.medical_treatment ,Interleukin-1beta ,Inflammation ,Lung injury ,CREB ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Antigens, CD ,Sepsis ,medicine ,Cyclic AMP ,Animals ,Humans ,Cyclic AMP Response Element-Binding Protein ,CAMP response element binding ,Mice, Knockout ,Respiratory Distress Syndrome ,biology ,business.industry ,General Medicine ,medicine.disease ,Cadherins ,030104 developmental biology ,medicine.anatomical_structure ,Cytokine ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Endothelium, Vascular ,VE-cadherin ,medicine.symptom ,business ,Research Article - Abstract
Unchecked inflammation is a hallmark of inflammatory tissue injury in diseases such as acute respiratory distress syndrome (ARDS). Yet the mechanisms of inflammatory lung injury remain largely unknown. Here we showed that bacterial endotoxin lipopolysaccharide (LPS) and cecal ligation and puncture-induced (CLP-induced) polymicrobial sepsis decreased the expression of transcription factor cAMP response element binding (CREB) in lung endothelial cells. We demonstrated that endothelial CREB was crucial for VE-cadherin transcription and the formation of the normal restrictive endothelial adherens junctions. The inflammatory cytokine IL-1β reduced cAMP generation and CREB-mediated transcription of VE-cadherin. Furthermore, endothelial cell-specific deletion of CREB induced lung vascular injury whereas ectopic expression of CREB in the endothelium prevented the injury. We also observed that rolipram, which inhibits type 4 cyclic nucleotide phosphodiesterase-mediated (PDE4-mediated) hydrolysis of cAMP, prevented endotoxemia-induced lung vascular injury since it preserved CREB-mediated VE-cadherin expression. These data demonstrate the fundamental role of the endothelial cAMP-CREB axis in promoting lung vascular integrity and suppressing inflammatory injury. Therefore, strategies aimed at enhancing endothelial CREB-mediated VE-cadherin transcription are potentially useful in preventing sepsis-induced lung vascular injury in ARDS.
- Published
- 2020
26. How Can Green Tax Laws Spur Green Behavior? An Analysis of the Influence of Chinese Tax Policy on Green Behavior
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Zhigang Hong and Danshera Cords
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Tax policy ,Law ,Spur ,Economics - Abstract
How Can Green Tax Laws Spur Green Behavior? An Analysis of the Influence of Chinese Tax Policy on Green Behavior
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- 2020
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27. Comprehensive identification of signaling pathways for idiopathic pulmonary arterial hypertension
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Jinming Liu, Peng Zhang, Zhigang Hong, Liping Zhu, Glenn Marsboom, Ping Yuan, Bingxun Liu, and Qinghua Hu
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0301 basic medicine ,Adult ,Male ,Candidate gene ,Receptors, CCR5 ,Physiology ,Caveolin 1 ,Myocytes, Smooth Muscle ,Nerve Tissue Proteins ,030204 cardiovascular system & hematology ,Biology ,Pulmonary Artery ,medicine.disease_cause ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Potassium Channels, Tandem Pore Domain ,Exome Sequencing ,medicine ,Humans ,Familial Primary Pulmonary Hypertension ,Calcium Signaling ,Exome sequencing ,Cell Proliferation ,Sanger sequencing ,Heart Failure ,Mutation ,Cadherin ,Cell Biology ,Middle Aged ,medicine.disease ,Calcium Channel Blockers ,Pulmonary hypertension ,BMPR2 ,Receptors, Complement ,030104 developmental biology ,HEK293 Cells ,symbols ,Cancer research ,Female ,Signal transduction ,Signal Transduction - Abstract
Whole exome sequencing (WES) was used in the research of familial pulmonary arterial hypertension (FPAH). CAV1 and KCNK3 were found as two novel candidate genes of FPAH. However, few pathogenic genes were identified in idiopathic pulmonary arterial hypertension (IPAH). We conducted WES in 20 unrelated IPAH patients who did not carry the known PAH-pathogenic variants among BMPR2, CAV1, KCNK3, SMAD9, ALK1, and ENG. We found a total of 4,950 variants in 3,534 genes, including 4,444 single-nucleotide polymorphisms and 506 insertions/deletions (InDels). Through the comprehensive and multilevel analysis, we disclosed several novel signaling cascades significantly connected to IPAH, including variants related to cadherin signaling pathway, dilated cardiomyopathy, glucose metabolism, immune response, mucin-type O-glycosylation, phospholipase C (PLC)-activating G protein-coupled receptor (GPCR) signaling pathway, vascular contraction and generation, and voltage-dependent Ca2+ channels. We also conducted validation studies in five mutant genes related to PLC-activating GPCR signaling pathway potentially involved in intracellular calcium regulation through Sanger sequencing for mutation accuracy, qRT-PCR for mRNA stability, immunofluorescence for subcellular localization, Western blotting for protein level, Fura-2 imaging for intracellular calcium, and proliferation analysis for cell function. The validation experiments showed that those variants in CCR5 and C3AR1 significantly increased the rise of intracellular calcium and the variant in CCR5 profoundly enhanced proliferative capacity of human pulmonary artery smooth muscle cells. Thus, our study suggests that multiple genetically affected signaling pathways take effect together to cause the formation of IPAH and the development of right heart failure and may further provide new therapy targets or putative clues for the present treatments such as limited therapeutic effectiveness of Ca2+ channel blockers.
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- 2020
28. Endothelial heterogeneity across distinct vascular beds during homeostasis and inflammation
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Asrar B. Malik, Jalees Rehman, Yang Dai, Zhigang Hong, Shubhi Srivastava, Ankit Jambusaria, Peter T. Toth, Arundhati Jana, and Lianghui Zhang
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0301 basic medicine ,Mouse ,Cell ,Gene Expression ,Transcriptome ,Mice ,0302 clinical medicine ,Gene expression ,Homeostasis ,Biology (General) ,Lung ,General Neuroscience ,Brain ,systems biology ,General Medicine ,3. Good health ,Cell biology ,endothelial heterogeneity ,medicine.anatomical_structure ,Medicine ,medicine.symptom ,Research Article ,Endothelium ,QH301-705.5 ,Science ,translatome ,Inflammation ,tissue specificity ,Biology ,Synaptic vesicle ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,medicine ,Animals ,Humans ,RNA, Messenger ,Human Biology and Medicine ,General Immunology and Microbiology ,Vascular disease ,Myocardium ,vascular biology ,medicine.disease ,Mice, Inbred C57BL ,030104 developmental biology ,inflammation ,Endothelium, Vascular ,030217 neurology & neurosurgery - Abstract
Blood vessels are lined by endothelial cells engaged in distinct organ-specific functions but little is known about their characteristic gene expression profiles. RNA-Sequencing of the brain, lung, and heart endothelial translatome identified specific pathways, transporters and cell-surface markers expressed in the endothelium of each organ, which can be visualized at http://www.rehmanlab.org/ribo. We found that endothelial cells express genes typically found in the surrounding tissues such as synaptic vesicle genes in the brain endothelium and cardiac contractile genes in the heart endothelium. Complementary analysis of endothelial single cell RNA-Seq data identified the molecular signatures shared across the endothelial translatome and single cell transcriptomes. The tissue-specific heterogeneity of the endothelium is maintained during systemic in vivo inflammatory injury as evidenced by the distinct responses to inflammatory stimulation. Our study defines endothelial heterogeneity and plasticity and provides a molecular framework to understand organ-specific vascular disease mechanisms and therapeutic targeting of individual vascular beds., eLife digest Blood vessels supply nutrients, oxygen and other key molecules to all of the organs in the body. Cells lining the blood vessels, called endothelial cells, regulate which molecules pass from the blood to the organs they supply. For example, brain endothelial cells prevent toxic molecules from getting into the brain, and lung endothelial cells allow immune cells into the lungs to fight off bacteria or viruses. Determining which genes are switched on in the endothelial cells of major organs might allow scientists to determine what endothelial cells do in the brain, heart, and lung, and how they differ; or help scientists deliver drugs to a particular organ. If endothelial cells from different organs switch on different groups of genes, each of these groups of genes can be thought of as a ‘genetic signature’ that identifies endothelial cells from a specific organ. Now, Jambusaria et al. show that brain, heart, and lung endothelial cells have distinct genetic signatures. The experiments used mice that had been genetically modified to have tags on their endothelial cells. These tags made it possible to isolate RNA – a molecule similar to DNA that contains the information about which genes are active – from endothelial cells without separating the cells from their tissue of origin. Next, RNA from endothelial cells in the heart, brain and lung was sequenced and analyzed. The results show that each endothelial cell type has a distinct genetic signature under normal conditions and infection-like conditions. Unexpectedly, the experiments also showed that genes that were thought to only be switched on in the cells of specific tissues are also on in the endothelial cells lining the blood vessels of the tissue. For example, genes switched on in brain cells are also active in brain endothelial cells, and genes allowing heart muscle cells to pump are also on in the endothelial cells of the heart blood vessels. The endothelial cell genetic signatures identified by Jambusaria et al. can be used as “postal codes” to target drugs to a specific organ via the endothelial cells that feed it. It might also be possible to use these genetic signatures to build organ-specific blood vessels from stem cells in the laboratory. Future work will try to answer why endothelial cells serving the heart and brain use genes from these organs.
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- 2020
29. N-cadherin signaling via Trio assembles adherens junctions to restrict endothelial permeability
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Asrar B. Malik, Leon M. Tai, Jae-Won Shin, Fei Huang, Shuangping Zhao, Jeff Klomp, Zhigang Hong, Ying Sun, Quinn S. Lee, Xiaoyan Yang, Mitchell Sun, Stephen M. Vogel, Deborah E. Leckband, Kevin Kruse, and Yulia Komarova
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Male ,rac1 GTP-Binding Protein ,rho GTP-Binding Proteins ,RHOA ,Vascular smooth muscle ,Endothelium ,Primary Cell Culture ,RAC1 ,Protein Serine-Threonine Kinases ,CDH2 ,Article ,Permeability ,Adherens junction ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Antigens, CD ,medicine ,Animals ,Guanine Nucleotide Exchange Factors ,Humans ,Lung ,Research Articles ,Aorta ,030304 developmental biology ,Mice, Knockout ,0303 health sciences ,biology ,Cadherin ,Neuropeptides ,Brain ,Endothelial Cells ,Adherens Junctions ,Cell Biology ,Cadherins ,Phosphoproteins ,Cell biology ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Gene Expression Regulation ,biology.protein ,Female ,Guanine nucleotide exchange factor ,Pericytes ,rhoA GTP-Binding Protein ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
This work describes a role for endothelial N-cadherin in the regulation of endothelial permeability in the brain and lung. N-cadherin adhesions formed between endothelial cells and pericytes increase the abundance of VE-cadherin at adherens junctions through the RhoGEF Trio-dependent activation of RhoA and Rac1., Vascular endothelial (VE)–cadherin forms homotypic adherens junctions (AJs) in the endothelium, whereas N-cadherin forms heterotypic adhesion between endothelial cells and surrounding vascular smooth muscle cells and pericytes. Here we addressed the question whether both cadherin adhesion complexes communicate through intracellular signaling and contribute to the integrity of the endothelial barrier. We demonstrated that deletion of N-cadherin (Cdh2) in either endothelial cells or pericytes increases junctional endothelial permeability in lung and brain secondary to reduced accumulation of VE-cadherin at AJs. N-cadherin functions by increasing the rate of VE-cadherin recruitment to AJs and induces the assembly of VE-cadherin junctions. We identified the dual Rac1/RhoA Rho guanine nucleotide exchange factor (GEF) Trio as a critical component of the N-cadherin adhesion complex, which activates both Rac1 and RhoA signaling pathways at AJs. Trio GEF1-mediated Rac1 activation induces the recruitment of VE-cadherin to AJs, whereas Trio GEF2-mediated RhoA activation increases intracellular tension and reinforces Rac1 activation to promote assembly of VE-cadherin junctions and thereby establish the characteristic restrictive endothelial barrier.
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- 2018
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30. Nordexfenfluramine causes more severe pulmonary vasoconstriction than dexfenfluramine
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Zhigang, Hong, Olschewski, Andrea, Reeve, Helen L., Nelson, Daniel P., Fangxiao, Hong, and Weir, E. Kenneth
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Dexfenfluramine -- Research ,Dexfenfluramine -- Physiological aspects ,Pulmonary hypertension -- Research ,Pulmonary hypertension -- Physiological aspects ,Pulmonary hypertension -- Causes of ,Biological sciences - Abstract
The anorectic agent dexfenfluramine (dex) causes the development of primary pulmonary hypertension in susceptible patients by an unknown mechanism. We compared the effects of dex with those of its major metabolite, nordexfenfluamine (nordex), in the isolated perfused rat lung and in isolated rings of resistance pulmonary arteries. Nordex caused a dose-dependent and more intense vasoconstriction, which can be inhibited by the nonspecific 5-hydroxytryptamine type 2 (5-[HT.sub.2]) blocker ketanserin. Similarly a rise in cytosolic calcium concentration ([[[Ca.sup.2+]].sub.i]) in dispersed pulmonary artery smooth muscle cells (PASMCs) induced by nordex could be prevented by ketanserin. Unlike prior observations with dex, nordex did not inhibit [K.sup.+] current or cause depolarization in PASMCs. Removal of [Ca.sup.2+] from the tissue bath or addition of nifedipine (1 [micro]M) reduced ring contraction to nordex by 60 [+ or -] 9 and 63 [+ or -] 4%, respectively. The addition of 2-aminoethoxydiphenyl borate (2-APB), a blocker of store-operated channels and the inositol 1,4,5-trispbosphate receptor, caused a dose-dependent decrease in the ring contraction elicited by nordex. The combination of 2-APB (10 [micro]M) and nifedipine (1 [micro]M) completely ablated the nordex contraction. Likewise the release of [Ca.sup.2+] from the sarcoplasmic reticulum by cyclopiazonic acid markedly reduced the nordex contraction while leaving the KCl contraction unchanged. We conclude that nordex may be responsible for much of the vasoconstriction stimulated by dex, through the activation of 5-H[T.sub.2] receptors and that the [[[Ca.sup.2+]].sub.i] increase in rat PASMCs caused by dex/nordex is due to both influx of extracellular [Ca.sup.2+] and release of [Ca.sup.2+] from the sarcoplasmic reticulum. anorectic agent; primary pulmonary hypertension; 5-[HT.sub.2] receptor; potassium channels
- Published
- 2004
31. Caspase-11–mediated endothelial pyroptosis underlies endotoxemia-induced lung injury
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She-Juan An, Zhiming Ye, Xiaopei Gao, Zhigang Hong, Anke Di, Edward A. Miao, Kit Man Tsang, Manish Mittal, Stephen M. Vogel, Shiqin Xiong, Kwong Tai Cheng, Asrar B. Malik, and Jalees Rehman
- Subjects
Lipopolysaccharides ,Male ,0301 basic medicine ,Programmed cell death ,Endothelium ,Interleukin-1beta ,Caspase-11 ,Lung injury ,Proinflammatory cytokine ,03 medical and health sciences ,Pyroptosis ,Animals ,Humans ,Medicine ,Lung ,Cells, Cultured ,Caspase ,Mice, Knockout ,biology ,business.industry ,Endothelial Cells ,Lung Injury ,General Medicine ,Caspases, Initiator ,Endotoxemia ,Mice, Inbred C57BL ,Toll-Like Receptor 4 ,Transplantation ,030104 developmental biology ,medicine.anatomical_structure ,Case-Control Studies ,Caspases ,Cancer research ,biology.protein ,Female ,Endothelium, Vascular ,business ,Research Article - Abstract
Acute lung injury is a leading cause of death in bacterial sepsis due to the wholesale destruction of the lung endothelial barrier, which results in protein-rich lung edema, influx of proinflammatory leukocytes, and intractable hypoxemia. Pyroptosis is a form of programmed lytic cell death that is triggered by inflammatory caspases, but little is known about its role in EC death and acute lung injury. Here, we show that systemic exposure to the bacterial endotoxin lipopolysaccharide (LPS) causes severe endothelial pyroptosis that is mediated by the inflammatory caspases, human caspases 4/5 in human ECs, or the murine homolog caspase-11 in mice in vivo. In caspase-11–deficient mice, BM transplantation with WT hematopoietic cells did not abrogate endotoxemia-induced acute lung injury, indicating a central role for nonhematopoietic caspase-11 in endotoxemia. Additionally, conditional deletion of caspase-11 in ECs reduced endotoxemia-induced lung edema, neutrophil accumulation, and death. These results establish the requisite role of endothelial pyroptosis in endotoxemic tissue injury and suggest that endothelial inflammatory caspases are an important therapeutic target for acute lung injury.
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- 2017
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32. SOX17 Regulates Conversion of Human Fibroblasts Into Endothelial Cells and Erythroblasts by Dedifferentiation Into CD34 + Progenitor Cells
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Ankit Jambusaria, Zhigang Hong, Brittney-Shea Herbert, Peter T. Toth, Lianghui Zhang, Glenn Marsboom, Jalees Rehman, and Asrar B. Malik
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0301 basic medicine ,Telomerase ,Angiogenesis ,Regeneration (biology) ,CD34 ,030204 cardiovascular system & hematology ,Biology ,Cell biology ,Endothelial stem cell ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Physiology (medical) ,Immunology ,Erythropoiesis ,Progenitor cell ,Cardiology and Cardiovascular Medicine ,Reprogramming - Abstract
Background: The mechanisms underlying the dedifferentiation and lineage conversion of adult human fibroblasts into functional endothelial cells have not yet been fully defined. Furthermore, it is not known whether fibroblast dedifferentiation recapitulates the generation of multipotent progenitors during embryonic development, which give rise to endothelial and hematopoietic cell lineages. Here we established the role of the developmental transcription factor SOX17 in regulating the bilineage conversion of fibroblasts by the generation of intermediate progenitors. Methods: CD34 + progenitors were generated after the dedifferentiation of human adult dermal fibroblasts by overexpression of pluripotency transcription factors. Sorted CD34 + cells were transdifferentiated into induced endothelial cells and induced erythroblasts using lineage-specific growth factors. The therapeutic potential of the generated cells was assessed in an experimental model of myocardial infarction. Results: Induced endothelial cells expressed specific endothelial cell surface markers and also exhibited the capacity for cell proliferation and neovascularization. Induced erythroblasts expressed erythroid surface markers and formed erythroid colonies. Endothelial lineage conversion was dependent on the upregulation of the developmental transcription factor SOX17, whereas suppression of SOX17 instead directed the cells toward an erythroid fate. Implantation of these human bipotential CD34 + progenitors into nonobese diabetic/severe combined immunodeficiency (NOD-SCID) mice resulted in the formation of microvessels derived from human fibroblasts perfused with mouse and human erythrocytes. Endothelial cells generated from human fibroblasts also showed upregulation of telomerase. Cell implantation markedly improved vascularity and cardiac function after myocardial infarction without any evidence of teratoma formation. Conclusions: Dedifferentiation of fibroblasts to intermediate CD34 + progenitors gives rise to endothelial cells and erythroblasts in a SOX17-dependent manner. These findings identify the intermediate CD34 + progenitor state as a critical bifurcation point, which can be tuned to generate functional blood vessels or erythrocytes and salvage ischemic tissue.
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- 2017
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33. MicroRNA-138 and MicroRNA-25 Down-regulate Mitochondrial Calcium Uniporter, Causing the Pulmonary Arterial Hypertension Cancer Phenotype
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Lian Tian, Sébastien Bonnet, Kuang-Hueih Chen, Stephen L. Archer, François Potus, Zhigang Hong, Mark L. Ormiston, Danchen Wu, Sandra Breuils-Bonnet, Jennifer Fu, Jeffrey Mewburn, Asish Dasgupta, Kimberly J. Dunham-Snary, and Steeve Provencher
- Subjects
0301 basic medicine ,Pulmonary and Respiratory Medicine ,Small interfering RNA ,Hypertension, Pulmonary ,Cell ,Cell Culture Techniques ,Down-Regulation ,Apoptosis ,Pyruvate Dehydrogenase Complex ,Pulmonary Artery ,Pharmacology ,Critical Care and Intensive Care Medicine ,CREB ,Mitochondrial Membrane Transport Proteins ,Muscle, Smooth, Vascular ,03 medical and health sciences ,Cytosol ,medicine.artery ,microRNA ,medicine ,Animals ,Humans ,Cyclic AMP Response Element-Binding Protein ,Cation Transport Proteins ,Cell Proliferation ,Gene knockdown ,biology ,business.industry ,Calcium-Binding Proteins ,Editorials ,Genetic Therapy ,Phenotype ,Rats ,Up-Regulation ,Disease Models, Animal ,MicroRNAs ,030104 developmental biology ,medicine.anatomical_structure ,Biochemistry ,Anaerobic glycolysis ,Case-Control Studies ,Pulmonary artery ,biology.protein ,Calcium ,Calcium Channels ,business ,Glycolysis - Abstract
Rationale: Pulmonary arterial hypertension (PAH) is an obstructive vasculopathy characterized by excessive pulmonary artery smooth muscle cell (PASMC) proliferation, migration, and apoptosis resistance. This cancer-like phenotype is promoted by increased cytosolic calcium ([Ca2+]cyto), aerobic glycolysis, and mitochondrial fission. Objectives: To determine how changes in mitochondrial calcium uniporter (MCU) complex (MCUC) function influence mitochondrial dynamics and contribute to PAH’s cancer-like phenotype. Methods: PASMCs were isolated from patients with PAH and healthy control subjects and assessed for expression of MCUC subunits. Manipulation of the pore-forming subunit, MCU, in PASMCs was achieved through small interfering RNA knockdown or MCU plasmid-mediated up-regulation, as well as through modulation of the upstream microRNAs (miRs) miR-138 and miR-25. In vivo, nebulized anti-miRs were administered to rats with monocrotaline-induced PAH. Measurements and Main Results: Impaired MCUC function, resulting from down-regulation of MCU and up-regulation of an inhibitory subunit, mitochondrial calcium uptake protein 1, is central to PAH’s pathogenesis. MCUC dysfunction decreases intramitochondrial calcium ([Ca2+]mito), inhibiting pyruvate dehydrogenase activity and glucose oxidation, while increasing [Ca2+]cyto, promoting proliferation, migration, and fission. In PAH PASMCs, increasing MCU decreases cell migration, proliferation, and apoptosis resistance by lowering [Ca2+]cyto, raising [Ca2+]mito, and inhibiting fission. In normal PASMCs, MCUC inhibition recapitulates the PAH phenotype. In PAH, elevated miRs (notably miR-138) down-regulate MCU directly and also by decreasing MCU’s transcriptional regulator cAMP response element–binding protein 1. Nebulized anti-miRs against miR-25 and miR-138 restore MCU expression, reduce cell proliferation, and regress established PAH in the monocrotaline model. Conclusions: These results highlight miR-mediated MCUC dysfunction as a unifying mechanism in PAH that can be therapeutically targeted.
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- 2017
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34. Albumin Nanoparticle Endocytosing Subset of Neutrophils for Precision Therapeutic Targeting of Inflammatory Tissue Injury.
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Bachmaier, Kurt, Stuart, Andrew, Singh, Abhalaxmi, Mukhopadhyay, Amitabha, Chakraborty, Sreeparna, Zhigang Hong, Li Wang, Yoshikazu Tsukasaki, Maienschein-Cline, Mark, Ganesh, Balaji B., Kanteti, Prasad, Rehman, Jalees, and Malik, Asrar B.
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- 2022
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35. Author response: Endothelial heterogeneity across distinct vascular beds during homeostasis and inflammation
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Peter T. Toth, Shubhi Srivastava, Arundhati Jana, Lianghui Zhang, Yang Dai, Zhigang Hong, Ankit Jambusaria, Asrar B. Malik, and Jalees Rehman
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Immunology ,medicine ,Inflammation ,medicine.symptom ,Biology ,Homeostasis - Published
- 2019
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36. High-loading Gα
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Aiming, Pang, Ni, Cheng, Yujie, Cui, Yanyan, Bai, Zhigang, Hong, M Keegan, Delaney, Yaping, Zhang, Claire, Chang, Can, Wang, Chang, Liu, Paola Leon, Plata, Alexander, Zakharov, Kasim, Kabirov, Jalees, Rehman, Randal A, Skidgel, Asrar B, Malik, Ying, Liu, Aleksander, Lyubimov, Minyi, Gu, and Xiaoping, Du
- Subjects
Mice ,Pharmaceutical Preparations ,Ischemia ,Animals ,Nanoparticles ,Myocardial Reperfusion Injury ,Thrombosis ,Peptides ,Article - Abstract
Inefficient delivery is a major obstacle to the development of peptide-based drugs targeting the intracellular compartment. We recently showed that selectively inhibiting integrin outside-in signaling using a peptide (mP6) derived from the Gα(13)-binding ExE motif within the integrin β(3) cytoplasmic domain had anti-thrombotic effects. Here, we engineered lipid-stabilized high loading peptide nanoparticles (HLPN), in which a redesigned ExE peptide (M3mP6) constituted up to 70% of the total nanoparticle molarity, allowing efficient in vivo delivery. We observed that M3mP6 HLPNs inhibited occlusive thrombosis more potently than a clopidogrel/aspirin combination without adverse effects on hemostasis in rodents. Furthermore, M3mP6 HLPN synergized with P2Y12 receptor inhibitors or the clopidogrel/aspirin combination in preventing thrombosis, without exacerbating hemorrhage. M3mP6 HLPN also inhibited intravascular coagulation more potently than the P2Y12 inhibitor cangrelor. Post-ischemia injection of M3mP6 HLPN protected the heart from myocardial ischemia-reperfusion injury in a mouse model. This study demonstrates an efficient in vivo peptide delivery strategy for a therapeutic that not only efficaciously prevented thrombosis with minimal bleeding risk but also protected from myocardial ischemia/reperfusion injury in mice.
- Published
- 2019
37. mtDNA Activates cGAS Signaling and Suppresses the YAP-Mediated Endothelial Cell Proliferation Program to Promote Inflammatory Injury
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Xiaopei Gao, Long Shuang Huang, Shiqin Xiong, Wei Wu, Ming Zhong, Asrar B. Malik, Jalees Rehman, and Zhigang Hong
- Subjects
0301 basic medicine ,Lipopolysaccharide ,Immunology ,Inflammation ,Cell Cycle Proteins ,Lung injury ,Biology ,DNA, Mitochondrial ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Cytosol ,medicine ,Pyroptosis ,Immunology and Allergy ,Animals ,Humans ,Cells, Cultured ,Adaptor Proteins, Signal Transducing ,Cell Proliferation ,YAP1 ,Mice, Knockout ,Intracellular Signaling Peptides and Proteins ,Endothelial Cells ,Membrane Proteins ,YAP-Signaling Proteins ,Phosphate-Binding Proteins ,Nucleotidyltransferases ,Cell biology ,Neoplasm Proteins ,Endothelial stem cell ,Mice, Inbred C57BL ,030104 developmental biology ,Infectious Diseases ,HEK293 Cells ,chemistry ,030220 oncology & carcinogenesis ,Signal transduction ,medicine.symptom ,Nucleotides, Cyclic ,Signal Transduction - Abstract
Cytosolic DNA acts as a universal danger-associated molecular pattern (DAMP) signal; however, the mechanisms of self-DNA release into the cytosol and its role in inflammatory tissue injury are not well understood. We found that the internalized bacterial endotoxin lipopolysaccharide (LPS) activated the pore forming protein Gasdermin D, which formed mitochondrial pores and induced mitochondrial DNA (mtDNA) release into the cytosol of endothelial cells. mtDNA was recognized by the DNA sensor cGAS and generated the second messenger cGAMP, which suppressed endothelial cell proliferation by downregulating YAP1 signaling. This indicated that the surviving endothelial cells in the penumbrium of the inflammatory injury were compromised in their regenerative capacity. In an experimental model of inflammatory lung injury, deletion of cGas in mice restored endothelial regeneration. The results suggest that targeting the endothelial Gasdermin D activated cGAS-YAP signaling pathway could serve as a potential strategy for restoring endothelial function following inflammatory injury.
- Published
- 2019
38. The whole process test and analysis of flue gas SO3 in coal-fired power plant under variable load conditions
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Wei Chen, Quankai Huang, Zhigang Hong, and Yongsheng Liu
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Flue gas ,Variable load ,business.industry ,Process (computing) ,Environmental science ,Process engineering ,business ,Coal fired power plant - Abstract
Under the current situation of ultra-low emission, it is of great significance to study the formation and removal of SO3 in various equipments of coal-fired power plants. At present, most researches on SO3 in coal-fired power plant focus on the influence of single equipment on flue gas SO3 under a certain load condition. In this research, a 300MW generating unit is tested under variable load conditions to explore the variation law of SO3 in various equipments under variable load conditions. The results show that SO3 is mainly generated in the boiler furnace and SCR denitrification device, and the total removal rate of SO3 is 84.6%. However, the removal efficiency of SO3 in electrostatic precipitators and the wet desulfurization systems shows great differences. Under full load condition, the removal rate of SO3 is 46.8% - 69.8%. When the load changes, the SO3 removal rate changes with the change of load, and the ESP is affected by the load most. The SO3 content in the ash increases from 11.267mg/g under 50% load to 14.763mg/g under 100% load, and such changes are mainly determined by flue gas temperature and flue gas flow.
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- 2020
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39. The sitting-type furniture about the introduction of PSS theory for the old
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Peijie Ren, Nan Huang, Haiyue Lai, Jifei Hu, Zhigang Hong, Jinfeng xu, and Lanyue Fan
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medicine.medical_specialty ,Physical therapy ,medicine ,Psychology ,Sitting - Abstract
Under the general background of population aging, suitable products of the old have been developed, among which furniture of the old has also received people’s attention. Combining with the product service system (PSS), this paper studies the sitting-type furniture suitable for the elderly according to the psychological and physiological particularity of the elderly, and discusses the mode of PSS applied to the sitting-type furniture suitable for the aged, so as to promote the development of the sitting-type furniture suitable for the aged and better service for the old.
- Published
- 2020
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40. Piezo1 mediates angiogenesis through activation of MT1-MMP signaling
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Dolly Mehta, Zhigang Hong, Ming Zhong, Asrar B. Malik, Jennifer E. Klomp, Andrei V. Karginov, Kayla J. Bayless, Hojin Kang, and Guochang Hu
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Endothelium ,Physiology ,Chemistry ,Angiogenesis ,PIEZO1 ,Neovascularization, Physiologic ,Mice, Transgenic ,Cell Biology ,Matrix metalloproteinase ,Ion Channels ,Cell biology ,Mice, Inbred C57BL ,Mice ,medicine.anatomical_structure ,medicine ,Human Umbilical Vein Endothelial Cells ,Matrix Metalloproteinase 14 ,Animals ,Humans ,Cells, Cultured ,Signal Transduction ,Research Article - Abstract
Angiogenesis is initiated in response to a variety of external cues, including mechanical and biochemical stimuli; however, the underlying signaling mechanisms remain unclear. Here, we investigated the proangiogenic role of the endothelial mechanosensor Piezo1. Genetic deletion and pharmacological inhibition of Piezo1 reduced endothelial sprouting and lumen formation induced by wall shear stress and proangiogenic mediator sphingosine 1-phosphate, whereas Piezo1 activation by selective Piezo1 activator Yoda1 enhanced sprouting angiogenesis. Similarly to wall shear stress, sphingosine 1-phosphate functioned by activating the Ca2+ gating function of Piezo1, which in turn signaled the activation of the matrix metalloproteinase-2 and membrane type 1 matrix metalloproteinase during sprouting angiogenesis. Studies in mice in which Piezo1 was conditionally deleted in endothelial cells demonstrated the requisite role of sphingosine 1-phosphate-dependent activation of Piezo1 in mediating angiogenesis in vivo. These results taken together suggest that both mechanical and biochemical stimuli trigger Piezo1-mediated Ca2+ influx and thereby activate matrix metalloproteinase-2 and membrane type 1 matrix metalloproteinase and synergistically facilitate sprouting angiogenesis.
- Published
- 2018
41. Piezo1 Regulation of Lung Endothelial Barrier Function in Left Heart Failure
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Emily E. Friedrich, Yulia Komarova, Zhigang Hong, Asrar B. Malik, Jalees Rehman, and Ming Zhong
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medicine.medical_specialty ,Lung ,business.industry ,PIEZO1 ,Left heart failure ,Biochemistry ,medicine.anatomical_structure ,Endothelial barrier ,Internal medicine ,Genetics ,medicine ,Cardiology ,business ,Molecular Biology ,Function (biology) ,Biotechnology - Published
- 2018
- Full Text
- View/download PDF
42. Additional file 1: of A computational approach to identify cellular heterogeneity and tissue-specific gene regulatory networks
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Jambusaria, Ankit, Klomp, Jeff, Zhigang Hong, Rafii, Shahin, Dai, Yang, Asrar Malik, and Jalees Rehman
- Abstract
Figure S1. A) Hierarchical clustering of Endothelial cells from 7 mouse organs Intra- and inter-tissue heterogeneity. Tree plot generated via hierarchical clustering of 500 most variable genes across all distinct tissue endothelial cell samples B) Hierarchical clustering of Neuronal cells from 5 different regions of the mouse forebrain Intra- and inter-tissue heterogeneity. Tree plot generated via hierarchical clustering of 500 most variable genes across all distinct tissue neuronal cell samples. Figure S2. Comparison of statistical power and type-I error rate between HeteroPath, GSEA, and PGSEA for DE Gene Set size of 50 genes. The averaged results of 500 simulations are depicted as function of the sample size on the x-axis, for each of the methods. On the y-axis either the statistical power or the empirical type-I error rate is shown. GSE scores were calculated with each method with respect to two gene sets, one of them differentially expressed (DE) and the other one not. Statistical power and empirical type-I error rates were estimated by performing an ANOVA on the DE and non-DE gene sets, respectively, at a significance level of α = 0.05. Figure S3. Comparison of statistical power and type-I error rate between HeteroPath, GSEA, and PGSEA for DE Gene Set size of 150 genes. The averaged results of 500 simulations are depicted as function of the sample size on the x-axis, for each of the methods. On the y-axis either the statistical power or the empirical type-I error rate is shown. GSE scores were calculated with each method with respect to two gene sets, one of them differentially expressed (DE) and the other one not. Statistical power and empirical type-I error rates were estimated by performing an ANOVA on the DE and non-DE gene sets, respectively, at a significance level of α = 0.05. Figure S4. A) Enriched Wnt Signaling Motifs from Brain endothelial cells The table shows the five most enriched motifs in ChIP-seq peaks and the associated transcription factors. Significance values and significant p-values (p ≤ 0.05) are shown. B) Enriched Oxidative Phosphorylation Motifs from Hippocampal Neurons The table shows the five most enriched motifs in ChIP-seq peaks and the associated transcription factors. Significance values and significant p-values (p ≤ 0.05) are shown. (PPTX 1265 kb)
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- 2018
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43. Hyperpigmentation on the Palm in a Three-year-old Girl: A Quiz
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Xiaohua Zhou, Gongjun Xu, Suying Feng, Huan Mei, Jinxian Fang, Zhigang Hong, Jinglun Xu, and Xianghua Lv
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medicine.medical_specialty ,business.industry ,media_common.quotation_subject ,Hand Dermatoses ,Dermatology ,General Medicine ,lcsh:RL1-803 ,Hyperpigmentation ,Diagnosis, Differential ,Rare Diseases ,Tinea ,Child, Preschool ,lcsh:Dermatology ,Dermatomycoses ,Humans ,Medicine ,Female ,Girl ,medicine.symptom ,business ,Palm ,media_common - Published
- 2019
- Full Text
- View/download PDF
44. A computational approach to identify cellular heterogeneity and tissue-specific gene regulatory networks
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Asrar B. Malik, Jalees Rehman, Ankit Jambusaria, Yang Dai, Shahin Rafii, Zhigang Hong, and Jeff Klomp
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0301 basic medicine ,Databases, Factual ,Gene set enrichment ,Pathway analysis ,Neuronal heterogeneity ,Systems biology ,Cells ,Endothelial cells ,Gene regulatory network ,Computational biology ,Biology ,lcsh:Computer applications to medicine. Medical informatics ,Biochemistry ,Vascular biology ,Transcriptome ,03 medical and health sciences ,Genetic Heterogeneity ,Transcription factor binding motifs ,Structural Biology ,Gene expression ,Humans ,Therapeutic targets ,Gene Regulatory Networks ,lcsh:QH301-705.5 ,Molecular Biology ,Gene ,Transcription factor ,Transcriptional networks ,Neurons ,Applied Mathematics ,Gene Expression Profiling ,Computational Biology ,Phenotype ,Tissue specificity ,Computer Science Applications ,Endothelial heterogeneity ,030104 developmental biology ,lcsh:Biology (General) ,Organ Specificity ,lcsh:R858-859.7 ,DNA microarray ,Transcription Factors ,Research Article - Abstract
Background The heterogeneity of cells across tissue types represents a major challenge for studying biological mechanisms as well as for therapeutic targeting of distinct tissues. Computational prediction of tissue-specific gene regulatory networks may provide important insights into the mechanisms underlying the cellular heterogeneity of cells in distinct organs and tissues. Results Using three pathway analysis techniques, gene set enrichment analysis (GSEA), parametric analysis of gene set enrichment (PGSEA), alongside our novel model (HeteroPath), which assesses heterogeneously upregulated and downregulated genes within the context of pathways, we generated distinct tissue-specific gene regulatory networks. We analyzed gene expression data derived from freshly isolated heart, brain, and lung endothelial cells and populations of neurons in the hippocampus, cingulate cortex, and amygdala. In both datasets, we found that HeteroPath segregated the distinct cellular populations by identifying regulatory pathways that were not identified by GSEA or PGSEA. Using simulated datasets, HeteroPath demonstrated robustness that was comparable to what was seen using existing gene set enrichment methods. Furthermore, we generated tissue-specific gene regulatory networks involved in vascular heterogeneity and neuronal heterogeneity by performing motif enrichment of the heterogeneous genes identified by HeteroPath and linking the enriched motifs to regulatory transcription factors in the ENCODE database. Conclusions HeteroPath assesses contextual bidirectional gene expression within pathways and thus allows for transcriptomic assessment of cellular heterogeneity. Unraveling tissue-specific heterogeneity of gene expression can lead to a better understanding of the molecular underpinnings of tissue-specific phenotypes. Electronic supplementary material The online version of this article (10.1186/s12859-018-2190-6) contains supplementary material, which is available to authorized users.
- Published
- 2017
45. The TWIK2 Potassium Efflux Channel in Macrophages Mediates NLRP3 Inflammasome-Induced Inflammation
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Zhiming Ye, R. K. Subbarao Malireddi, Manish Mittal, Zhigang Hong, Satoshi Kometani, Thirumala-Devi Kanneganti, Shiqin Xiong, Asrar B. Malik, Anke Di, Jalees Rehman, and Ming Zhong
- Subjects
0301 basic medicine ,Lipopolysaccharides ,Adoptive cell transfer ,Potassium Channels ,Inflammasomes ,Potassium ,Immunology ,Interleukin-1beta ,chemistry.chemical_element ,Inflammation ,Lung injury ,Biology ,Article ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Adenosine Triphosphate ,Potassium Channels, Tandem Pore Domain ,Sepsis ,NLR Family, Pyrin Domain-Containing 3 Protein ,medicine ,Immunology and Allergy ,Animals ,RNA, Small Interfering ,Mice, Knockout ,Lung ,integumentary system ,Quinine ,Macrophages ,Caspase 1 ,Inflammasome ,Lung Injury ,Potassium channel ,Cell biology ,Mice, Inbred C57BL ,030104 developmental biology ,Infectious Diseases ,medicine.anatomical_structure ,chemistry ,Efflux ,Receptors, Purinergic P2X7 ,medicine.symptom ,030217 neurology & neurosurgery ,medicine.drug ,Signal Transduction - Abstract
Potassium (K(+)) efflux across the plasma membrane is thought to be an essential mechanism for ATP-induced NLRP3 inflammasome activation yet the identity of the efflux channel has remained elusive. Here we identified the two-pore domain K(+) channel (K(2P)) TWIK2 as the K(+) efflux channel triggering NLRP3 inflammasome activation. Deletion of the Kcnk6 gene (encoding TWIK2) prevented NLRP3 activation in macrophages and suppressed sepsis-induced lung inflammation. Adoptive transfer of Kcnk6(−/−) macrophages into mouse airways after macrophage depletion also prevented inflammatory lung injury. The K(+) efflux channel TWIK2 in macrophages has a fundamental role in activating the NLRP3 inflammasome and consequently mediates inflammation, pointing to TWIK2 as a potential target for anti-inflammatory therapies.
- Published
- 2017
46. Ischemia-induced Drp1 and Fis1-mediated mitochondrial fission and right ventricular dysfunction in pulmonary hypertension
- Author
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Kimberly J. Dunham-Snary, Lian Tian, Kuang-Hueih Chen, Zhigang Hong, Asish Dasgupta, Danchen Wu, Stephen L. Archer, Jeffrey Mewburn, Willard W. Sharp, M. Neuber-Hess, and Shelby Kutty
- Subjects
Dynamins ,0301 basic medicine ,FIS1 ,endocrine system ,medicine.medical_specialty ,RM ,Hypertension, Pulmonary ,Ventricular Dysfunction, Right ,Diastole ,Ischemia ,Myocardial Reperfusion Injury ,030204 cardiovascular system & hematology ,Mitochondrion ,Biology ,Mitochondrial Dynamics ,Article ,Mitochondrial Proteins ,Rats, Sprague-Dawley ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Drug Discovery ,medicine ,Animals ,Genetics (clinical) ,medicine.disease ,Pulmonary hypertension ,Mitochondria ,030104 developmental biology ,Cardiology ,Molecular Medicine ,End-diastolic volume ,Mitochondrial fission ,Ex vivo - Abstract
Right ventricular (RV) function determines prognosis in pulmonary arterial hypertension (PAH). We hypothesize that ischemia causes RV dysfunction in PAH by triggering dynamin-related protein 1 (Drp1)-mediated mitochondrial fission. RV function was compared in control rats (n = 50) versus rats with monocrotaline-induced PAH (MCT-PAH; n = 60) both in vivo (echocardiography) and ex vivo (RV Langendorff). Mitochondrial membrane potential and morphology and RV function were assessed before or after 2 cycles of ischemia-reperfusion injury challenge (RV-IR). The effects of Mdivi-1 (25 μM), a Drp1 GTPase inhibitor, and P110 (1 μM), a peptide inhibitor of Drp1-Fis1 interaction, were studied. We found that MCT caused RV hypertrophy, RV vascular rarefaction, and RV dysfunction. Prior to IR, the mitochondria in MCT-PAH RV were depolarized and swollen with increased Drp1 content and reduced aconitase activity. RV-IR increased RV end diastolic pressure (RVEDP) and mitochondrial Drp1 expression in both control and MCT-PAH RVs. IR depolarized mitochondria in control RV but did not exacerbate the basally depolarized MCT-PAH RV mitochondria. During RV IR mdivi-1 and P110 reduced Drp1 translocation to mitochondria, improved mitochondrial structure and function, and reduced RVEDP. In conclusion, RV ischemia occurs in PAH and causes Drp1-Fis1-mediated fission leading to diastolic dysfunction. Inhibition of mitochondrial fission preserves RV function in RV-IR.Right ventricular ischemia reperfusion (RV-IR) causes RV diastolic dysfunction. IR-induced mitochondrial fission causes RV diastolic dysfunction. In RV-IR Drp1 translocates to mitochondria, binds Fis1 and causes fission and injury. A baseline RV mitochondriopathy in MCT PAH resembles IR-induced mitochondrial injury. Drp1 inhibitors (Mdivi-1 and P110) preserve RV diastolic function post RV-IR.
- Published
- 2017
47. PV1 in Caveolae Controls Lung Endothelial Permeability.
- Author
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Jones, Joshua H., Friedrich, Emily, Zhigang Hong, Minshall, Richard D., and Malik, Asrar B.
- Subjects
LUNG diseases ,ENDOTHELIAL cells ,CELL permeability ,GLYCOPROTEINS ,GENE expression - Abstract
Caveolae are prominent plasmalemmal invaginations in endothelial cells, especially in the lung vasculature, which comprises a vast surface area. PV1 (plasmalemmal vesicle-associated protein-1), a 60-kD glycoprotein expressed in endothelial cells, is essential for generating spoke-like diaphragmatic structures that span the neck region of endothelial caveolae. However, their role in caveolaemediated uptake and endothelial-barrier function is unknown. Here, we generated mice with endothelial cell-specific deletion of PV1 through tamoxifen-induced Cdh5.Cre.ERT2 (endothelial-specific vascular cadherin.Cre.estrogen receptor 2)-mediated excision of the floxed PV1 allele. We observed that loss of PV1 specifically in endothelial cells increased lung vascular permeability of fluid and protein, indicating that PV1 is required for maintenance of lung vascular-barrier integrity. Endothelial-specific PV1 deletion also increased caveolae-mediated uptake of tracer albumin compared with controls, promoted Au-albumin accumulation in the bulb of caveolae, and induced caveolar swelling. In addition, we observed the progressive loss of plasma proteins from the circulation and reduced arterial pressure resulting from transudation of water and protein as well as edema formation in multiple tissues, including lungs. These changes seen after endothelial-specific PV1 deletion occurred in the absence of disruption of endothelial junctions. We demonstrated that exposure of wild-type mice to endotoxin, which is known to cause acute lung injury and increase protein permeability, also significantly reduced PV1 protein expression. We conclude that the key function of PV1 is to regulate lung endothelial permeability through its ability to restrict the entry of plasma proteins such as albumin into caveolae and their transport through the endothelial barrier. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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48. IL-1β suppression of VE-cadherin transcription underlies sepsis-induced inflammatory lung injury.
- Author
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Shiqin Xiong, Zhigang Hong, Long Shuang Huang, Yoshikazu Tsukasaki, Saroj Nepal, Anke Di, Ming Zhong, Wei Wu, Zhiming Ye, Xiaopei Gao, Rao, Gadiparthi N., Mehta, Dolly, Rehman, Jalees, Malik, Asrar B., Xiong, Shiqin, Hong, Zhigang, Huang, Long Shuang, Tsukasaki, Yoshikazu, Nepal, Saroj, and Di, Anke
- Abstract
Unchecked inflammation is a hallmark of inflammatory tissue injury in diseases such as acute respiratory distress syndrome (ARDS). Yet the mechanisms of inflammatory lung injury remain largely unknown. Here we showed that bacterial endotoxin lipopolysaccharide (LPS) and cecal ligation and puncture-induced (CLP-induced) polymicrobial sepsis decreased the expression of transcription factor cAMP response element binding (CREB) in lung endothelial cells. We demonstrated that endothelial CREB was crucial for VE-cadherin transcription and the formation of the normal restrictive endothelial adherens junctions. The inflammatory cytokine IL-1β reduced cAMP generation and CREB-mediated transcription of VE-cadherin. Furthermore, endothelial cell-specific deletion of CREB induced lung vascular injury whereas ectopic expression of CREB in the endothelium prevented the injury. We also observed that rolipram, which inhibits type 4 cyclic nucleotide phosphodiesterase-mediated (PDE4-mediated) hydrolysis of cAMP, prevented endotoxemia-induced lung vascular injury since it preserved CREB-mediated VE-cadherin expression. These data demonstrate the fundamental role of the endothelial cAMP-CREB axis in promoting lung vascular integrity and suppressing inflammatory injury. Therefore, strategies aimed at enhancing endothelial CREB-mediated VE-cadherin transcription are potentially useful in preventing sepsis-induced lung vascular injury in ARDS. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
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49. Comprehensive identification of signaling pathways for idiopathic pulmonary arterial hypertension.
- Author
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Bingxun Liu, Liping Zhu, Ping Yuan, Marsboom, Glenn, Zhigang Hong, Jinming Liu, Peng Zhang, and Qinghua Hu
- Subjects
PULMONARY hypertension ,SINGLE nucleotide polymorphisms ,PHOSPHOLIPASE C ,CELL physiology ,INTRACELLULAR calcium ,WESTERN immunoblotting ,PHOSPHOLIPASES - Abstract
Whole exome sequencing (WES) was used in the research of familial pulmonary arterial hypertension (FPAH). CAV1 and KCNK3 were found as two novel candidate genes of FPAH. However, few pathogenic genes were identified in idiopathic pulmonary arterial hypertension (IPAH). We conducted WES in 20 unrelated IPAH patients who did not carry the known PAH-pathogenic variants among BMPR2, CAV1, KCNK3, SMAD9, ALK1, and ENG. We found a total of 4,950 variants in 3,534 genes, including 4,444 single-nucleotide polymorphisms and 506 insertions/deletions (In-Dels). Through the comprehensive and multilevel analysis, we disclosed several novel signaling cascades significantly connected to IPAH, including variants related to cadherin signaling pathway, dilated cardiomyopathy, glucose metabolism, immune response, mucintype O-glycosylation, phospholipase C (PLC)-activating G proteincoupled receptor (GPCR) signaling pathway, vascular contraction and generation, and voltage-dependent Ca2+ channels. We also conducted validation studies in five mutant genes related to PLC-activating GPCR signaling pathway potentially involved in intracellular calcium regulation through Sanger sequencing for mutation accuracy, qRTPCR for mRNA stability, immunofluorescence for subcellular localization, Western blotting for protein level, Fura-2 imaging for intracellular calcium, and proliferation analysis for cell function. The validation experiments showed that those variants in CCR5 and C3AR1 significantly increased the rise of intracellular calcium and the variant in CCR5 profoundly enhanced proliferative capacity of human pulmonary artery smooth muscle cells. Thus, our study suggests that multiple genetically affected signaling pathways take effect together to cause the formation of IPAH and the development of right heart failure and may further provide new therapy targets or putative clues for the present treatments such as limited therapeutic effectiveness of Ca2+ channel blockers. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
50. Alveolar Stretch Activation of Endothelial Piezo1 Protects Adherens Junctions and Lung Vascular Barrier.
- Author
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Ming Zhong, Wei Wu, Hojin Kang, Zhigang Hong, Shiqin Xiong, Xiaopei Gao, Rehman, Jalees, Komarova, Yulia A., and Malik, Asrar B.
- Subjects
LUNG injuries ,ARTIFICIAL respiration ,ENDOTHELIAL cells ,CELL membranes ,CYSTEINE proteinases - Abstract
Disruption of alveolar-capillary barriers is a major complication of high-volume mechanical ventilation referred to as "ventilatorinduced lung injury." The stretching force in alveoli is transmitted to endothelial cells, increasing the tension on underlying endothelial plasma membrane. The mechanosensor Piezo1, a plasma membrane cation channel, was inducibly deleted in endothelial cells of mice (Piezo1iEC2/2), which allowed us to study its role in regulating the endothelial barrier response to alveolar stretch. We observed significant increase in lung vascular permeability in Piezo1iEC2/2 mice as compared with control Piezo1fl/fl mice in response to highvolume mechanical ventilation. We also observed that human lung endothelial monolayers depleted of Piezo1 and exposed to cyclic stretch had increased permeability. We identified the calcium-dependent cysteine protease calpain as a downstream target of Piezo1. Furthermore, we showed that calpain maintained stability of the endothelial barrier in response to mechanical stretch by cleaving Src kinase, which was responsible for disassembling endothelial adherens junctions. Pharmacological activation of calpain caused Src cleavage and thereby its inactivation, and it restored the disrupted lung endothelial barrier seen in Piezo1iEC2/2 mice undergoing high-volume mechanical ventilation. Our data demonstrate that downregulation of Piezo1 signaling in endothelium is a critical factor in the pathogenesis of ventilator-induced lung injury, and thus augmenting Piezo1 expression or pharmacologically activating Piezo1 signaling may be an effective therapeutic strategy. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
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