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Accurate assessment of lymph node size in 3D CT scans is crucial for cancer staging, therapeutic management, and monitoring treatment response. Existing state-of-the-art segmentation frameworks in medical imaging often rely on fully annotated datasets. However, for lymph node segmentation, these datasets are typically small due to the extensive time and expertise required to annotate the numerous lymph nodes in 3D CT scans. Weakly-supervised learning, which leverages incomplete or noisy annotations, has recently gained interest in the medical imaging community as a potential solution. Despite the variety of weakly-supervised techniques proposed, most have been validated only on private datasets or small publicly available datasets. To address this limitation, the Mediastinal Lymph Node Quantification (LNQ) challenge was organized in conjunction with the 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023). This challenge aimed to advance weakly-supervised segmentation methods by providing a new, partially annotated dataset and a robust evaluation framework. A total of 16 teams from 5 countries submitted predictions to the validation leaderboard, and 6 teams from 3 countries participated in the evaluation phase. The results highlighted both the potential and the current limitations of weakly-supervised approaches. On one hand, weakly-supervised approaches obtained relatively good performance with a median Dice score of $61.0\%$. On the other hand, top-ranked teams, with a median Dice score exceeding $70\%$, boosted their performance by leveraging smaller but fully annotated datasets to combine weak supervision and full supervision. This highlights both the promise of weakly-supervised methods and the ongoing need for high-quality, fully annotated data to achieve higher segmentation performance., Comment: Submitted to MELBA

Automatic and precise segmentation of vertebrae from CT images is crucial for various clinical applications. However, due to a lack of explicit and strict constraints, existing methods especially for single-stage methods, still suffer from the challenge of intra-vertebrae segmentation inconsistency, which refers to multiple label predictions inside a singular vertebra. For multi-stage methods, vertebrae detection serving as the first step, is affected by the pathology and mental implants. Thus, incorrect detections cause biased patches before segmentation, then lead to inconsistent labeling and segmentation. In our work, motivated by the perspective of instance segmentation, we try to label individual and complete binary masks to address this limitation. Specifically, a contour-based network is proposed based on Structural Low-Rank Descriptors for shape consistency, termed SLoRD. These contour descriptors are acquired in a data-driven manner in advance. For a more precise representation of contour descriptors, we adopt the spherical coordinate system and devise the spherical centroid. Besides, the contour loss is designed to impose explicit consistency constraints, facilitating regressed contour points close to vertebral boundaries. Quantitative and qualitative evaluations on VerSe 2019 demonstrate the superior performance of our framework over other single-stage and multi-stage state-of-the-art (SOTA) methods., Comment: Under review

Controllability and proactivity are crucial properties of autonomous conversational agents (CAs). Controllability requires the CAs to follow the standard operating procedures (SOPs), such as verifying identity before activating credit cards. Proactivity requires the CAs to guide the conversation towards the goal during user uncooperation, such as persuasive dialogue. Existing research cannot be unified with controllability, proactivity, and low manual annotation. To bridge this gap, we propose a new framework for planning-based conversational agents (PCA) powered by large language models (LLMs), which only requires humans to define tasks and goals for the LLMs. Before conversation, LLM plans the core and necessary SOP for dialogue offline. During the conversation, LLM plans the best action path online referring to the SOP, and generates responses to achieve process controllability. Subsequently, we propose a semi-automatic dialogue data creation framework and curate a high-quality dialogue dataset (PCA-D). Meanwhile, we develop multiple variants and evaluation metrics for PCA, e.g., planning with Monte Carlo Tree Search (PCA-M), which searches for the optimal dialogue action while satisfying SOP constraints and achieving the proactive of the dialogue. Experiment results show that LLMs finetuned on PCA-D can significantly improve the performance and generalize to unseen domains. PCA-M outperforms other CoT and ToT baselines in terms of conversation controllability, proactivity, task success rate, and overall logical coherence, and is applicable in industry dialogue scenarios. The dataset and codes are available at XXXX.

Relic gravitational waves (RGWs) from early universe carry fundamental information, so it's extraordinarily important to search RGW signals from data of observatories like LIGO-Virgo network. Here, focusing on typical RGWs from inflation and first-order phase transition (by sound waves and bubble collisions), effective and targeted deep learning neural networks are established to search RGW signals among real LIGO data (O2, O3a and O3b). We construct Convolutional Neural Network (CNN) to estimate likelihood (by quantitative values and distributions) of existence of focused RGW signals in LIGO data, or provide constraints on their strengths. We find if the built CNN properly estimates the parameters of RGWs, it can accurately (about 94% to 99%) determine whether the samples contain RGW signals, and if not, the likelihood given by CNN is not reliable. After testing large amount of LIGO datasets, the results indicate no evidence of RGWs from inflation, sound waves, or bubble collisions predicted by focused theories, and it provides upper limits of their GW spectral energy densities of h^2\Omega_{gw} of 10^{-5} (for various orders of GW amplitude given specific parameter regions by reverse mapping). In short, null results and upper limits are acquire; the methods and neural networks we develop to search RGWs from LIGO data could be effective and reliable, which can be applied not only for current data but also upcoming O4 data or other observational datasets, to establish an available scheme for exploring potential RGW signals or to provide constraints on relevant theoretical models.

Large language models (LLMs) and small language models (SLMs) are being adopted at remarkable speed, although their safety still remains a serious concern. With the advent of multilingual S/LLMs, the question now becomes a matter of scale: can we expand multilingual safety evaluations of these models with the same velocity at which they are deployed? To this end we introduce RTP-LX, a human-transcreated and human-annotated corpus of toxic prompts and outputs in 28 languages. RTP-LX follows participatory design practices, and a portion of the corpus is especially designed to detect culturally-specific toxic language. We evaluate seven S/LLMs on their ability to detect toxic content in a culturally-sensitive, multilingual scenario. We find that, although they typically score acceptably in terms of accuracy, they have low agreement with human judges when judging holistically the toxicity of a prompt, and have difficulty discerning harm in context-dependent scenarios, particularly with subtle-yet-harmful content (e.g. microagressions, bias). We release of this dataset to contribute to further reduce harmful uses of these models and improve their safe deployment., Comment: Work in progress

To achieve the physics goal of precisely measure the Higgs, Z, W bosons and the top quark, future electron-positron colliders require that their detector system has excellent jet energy resolution. One feasible technical option is the high granular calorimetery based on the particle flow algorithm (PFA). A new high-granularity hadronic calorimeter with glass scintillator tiles (GSHCAL) has been proposed, which focus on the significant improvement of hadronic energy resolution with a notable increase of the energy sampling fraction by using high-density glass scintillator tiles. The minimum ionizing particle (MIP) response of a glass scintillator tile is crucial to the hadronic calorimeter, so a dedicated beamtest setup was developed for testing the first batch of large-size glass scintillators. The maximum MIP response of the first batch of glass scintillator tiles can reach up to 107 p.e./MIP, which essentially meets the design requirements of the CEPC GSHCAL. An optical simulation model of a single glass scintillator tile has been established, and the simulation results are consistent with the beamtest results.

Airway-related quantitative imaging biomarkers are crucial for examination, diagnosis, and prognosis in pulmonary diseases. However, the manual delineation of airway trees remains prohibitively time-consuming. While significant efforts have been made towards enhancing airway modelling, current public-available datasets concentrate on lung diseases with moderate morphological variations. The intricate honeycombing patterns present in the lung tissues of fibrotic lung disease patients exacerbate the challenges, often leading to various prediction errors. To address this issue, the 'Airway-Informed Quantitative CT Imaging Biomarker for Fibrotic Lung Disease 2023' (AIIB23) competition was organized in conjunction with the official 2023 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). The airway structures were meticulously annotated by three experienced radiologists. Competitors were encouraged to develop automatic airway segmentation models with high robustness and generalization abilities, followed by exploring the most correlated QIB of mortality prediction. A training set of 120 high-resolution computerised tomography (HRCT) scans were publicly released with expert annotations and mortality status. The online validation set incorporated 52 HRCT scans from patients with fibrotic lung disease and the offline test set included 140 cases from fibrosis and COVID-19 patients. The results have shown that the capacity of extracting airway trees from patients with fibrotic lung disease could be enhanced by introducing voxel-wise weighted general union loss and continuity loss. In addition to the competitive image biomarkers for prognosis, a strong airway-derived biomarker (Hazard ratio>1.5, p<0.0001) was revealed for survival prognostication compared with existing clinical measurements, clinician assessment and AI-based biomarkers., Comment: 19 pages

Precise boundary segmentation of volumetric images is a critical task for image-guided diagnosis and computer-assisted intervention, especially for boundary confusion in clinical practice. However, U-shape networks cannot effectively resolve this challenge due to the lack of boundary shape constraints. Besides, existing methods of refining boundaries overemphasize the slender structure, which results in the overfitting phenomenon due to networks' limited abilities to model tiny objects. In this paper, we reconceptualize the mechanism of boundary generation by encompassing the interaction dynamics with adjacent regions. Moreover, we propose a unified network termed PnPNet to model shape characteristics of the confused boundary region. Core ingredients of PnPNet contain the pushing and pulling branches. Specifically, based on diffusion theory, we devise the semantic difference module (SDM) from the pushing branch to squeeze the boundary region. Explicit and implicit differential information inside SDM significantly boost representation abilities for inter-class boundaries. Additionally, motivated by the K-means algorithm, the class clustering module (CCM) from the pulling branch is introduced to stretch the intersected boundary region. Thus, pushing and pulling branches will shrink and enlarge the boundary uncertainty respectively. They furnish two adversarial forces to promote models to output a more precise delineation of boundaries. We carry out experiments on three challenging public datasets and one in-house dataset, containing three types of boundary confusion in model predictions. Experimental results demonstrate the superiority of PnPNet over other segmentation networks, especially on evaluation metrics of HD and ASSD. Besides, pushing and pulling branches can serve as plug-and-play modules to enhance classic U-shape baseline models. Codes are available., Comment: 13 Figures, 8 Tables

Shape modeling of volumetric data is essential for medical image analysis and computer-aided intervention. In practice, automated shape reconstruction cannot always achieve satisfactory results due to limited image resolution and a lack of sufficiently detailed shape priors used as constraints. In this paper, a unified framework is proposed for 3D shape modelling and segmentation refinement based on implicit neural networks. To learn a sharable shape prior from different instances within the same category during training, physical details of volumetric data are firstly used to construct Physical-Informed Continuous Coordinate Transform (PICCT) for implicit shape modeling. For improved shape representation, implicit shape constraints based on Signed Distance Function (SDF) are used for both instances and latent templates. For inference, a Template Interaction Module (TIM) is proposed to refine 3D shapes produced by Convolutional Neural Networks (CNNs) via deforming deep implicit templates with latent codes. Experimental results on validation datasets involving liver, pancreas and lung segmentation demonstrate the superiority of our approach in shape refinement and reconstruction. The Chamfer Distance/Earth Mover's Distance achieved by the proposed method are 0.232/0.087 for the Liver dataset, 0.128/0.069 for the Pancreas dataset, and 0.417/0.100 for the Lung Lobe dataset, respectively.

Multi-contrast magnetic resonance imaging is a significant and essential medical imaging technique.However, multi-contrast imaging has longer acquisition time and is easy to cause motion artifacts. In particular, the acquisition time for a T2-weighted image is prolonged due to its longer repetition time (TR). On the contrary, T1-weighted image has a shorter TR. Therefore,utilizing complementary information across T1 and T2-weighted image is a way to decrease the overall imaging time. Previous T1-assisted T2 reconstruction methods have mostly focused on image domain using whole-based image fusion approaches. The image domain reconstruction method has the defects of high computational complexity and limited flexibility. To address this issue, we propose a novel multi-contrast imaging method called partition-based k-space synthesis (PKS) which can achieve super reconstruction quality of T2-weighted image by feature fusion. Concretely, we first decompose fully-sampled T1 k-space data and under-sampled T2 k-space data into two sub-data, separately. Then two new objects are constructed by combining the two sub-T1/T2 data. After that, the two new objects as the whole data to realize the reconstruction of T2-weighted image. Finally, the objective T2 is synthesized by extracting the sub-T2 data of each part. Experimental results showed that our combined technique can achieve comparable or better results than using traditional k-space parallel imaging(SAKE) that processes each contrast independently.

Intrathoracic airway segmentation in computed tomography (CT) is a prerequisite for various respiratory disease analyses such as chronic obstructive pulmonary disease (COPD), asthma and lung cancer. Unlike other organs with simpler shapes or topology, the airway's complex tree structure imposes an unbearable burden to generate the "ground truth" label (up to 7 or 3 hours of manual or semi-automatic annotation on each case). Most of the existing airway datasets are incompletely labeled/annotated, thus limiting the completeness of computer-segmented airway. In this paper, we propose a new anatomy-aware multi-class airway segmentation method enhanced by topology-guided iterative self-learning. Based on the natural airway anatomy, we formulate a simple yet highly effective anatomy-aware multi-class segmentation task to intuitively handle the severe intra-class imbalance of the airway. To solve the incomplete labeling issue, we propose a tailored self-iterative learning scheme to segment toward the complete airway tree. For generating pseudo-labels to achieve higher sensitivity , we introduce a novel breakage attention map and design a topology-guided pseudo-label refinement method by iteratively connecting breaking branches commonly existed from initial pseudo-labels. Extensive experiments have been conducted on four datasets including two public challenges. The proposed method ranked 1st in both EXACT'09 challenge using average score and ATM'22 challenge on weighted average score. In a public BAS dataset and a private lung cancer dataset, our method significantly improves previous leading approaches by extracting at least (absolute) 7.5% more detected tree length and 4.0% more tree branches, while maintaining similar precision.

Natural language generation (NLG) is one of the most impactful fields in NLP, and recent years have witnessed its evolution brought about by large language models (LLMs). As the key instrument for writing assistance applications, they are generally prone to replicating or extending offensive content provided in the input. In low-resource data regime, they can also lead to repetitive outputs. Usually, offensive content and repetitions are mitigated with post-hoc methods, including n-gram level blocklists, top-k and nucleus sampling. In this paper, we apply non-exact repetition suppression using token and sequence level unlikelihood loss, and further explore the framework of unlikelihood training objective in order to jointly endow the model with abilities to avoid generating offensive words and phrases from the beginning. Finally, with comprehensive experiments, we demonstrate that our proposed methods work exceptionally in controlling the repetition and content quality of LLM outputs.

Open international challenges are becoming the de facto standard for assessing computer vision and image analysis algorithms. In recent years, new methods have extended the reach of pulmonary airway segmentation that is closer to the limit of image resolution. Since EXACT'09 pulmonary airway segmentation, limited effort has been directed to quantitative comparison of newly emerged algorithms driven by the maturity of deep learning based approaches and clinical drive for resolving finer details of distal airways for early intervention of pulmonary diseases. Thus far, public annotated datasets are extremely limited, hindering the development of data-driven methods and detailed performance evaluation of new algorithms. To provide a benchmark for the medical imaging community, we organized the Multi-site, Multi-domain Airway Tree Modeling (ATM'22), which was held as an official challenge event during the MICCAI 2022 conference. ATM'22 provides large-scale CT scans with detailed pulmonary airway annotation, including 500 CT scans (300 for training, 50 for validation, and 150 for testing). The dataset was collected from different sites and it further included a portion of noisy COVID-19 CTs with ground-glass opacity and consolidation. Twenty-three teams participated in the entire phase of the challenge and the algorithms for the top ten teams are reviewed in this paper. Quantitative and qualitative results revealed that deep learning models embedded with the topological continuity enhancement achieved superior performance in general. ATM'22 challenge holds as an open-call design, the training data and the gold standard evaluation are available upon successful registration via its homepage., Comment: 32 pages, 16 figures. Homepage: https://atm22.grand-challenge.org/. Submitted

Although recent deep learning methods, especially generative models, have shown good performance in fast magnetic resonance imaging, there is still much room for improvement in high-dimensional generation. Considering that internal dimensions in score-based generative models have a critical impact on estimating the gradient of the data distribution, we present a new idea, low-rank tensor assisted k-space generative model (LR-KGM), for parallel imaging reconstruction. This means that we transform original prior information into high-dimensional prior information for learning. More specifically, the multi-channel data is constructed into a large Hankel matrix and the matrix is subsequently folded into tensor for prior learning. In the testing phase, the low-rank rotation strategy is utilized to impose low-rank constraints on tensor output of the generative network. Furthermore, we alternately use traditional generative iterations and low-rank high-dimensional tensor iterations for reconstruction. Experimental comparisons with the state-of-the-arts demonstrated that the proposed LR-KGM method achieved better performance.

The radiation dose in computed tomography (CT) examinations is harmful for patients but can be significantly reduced by intuitively decreasing the number of projection views. Reducing projection views usually leads to severe aliasing artifacts in reconstructed images. Previous deep learning (DL) techniques with sparse-view data require sparse-view/full-view CT image pairs to train the network with supervised manners. When the number of projection view changes, the DL network should be retrained with updated sparse-view/full-view CT image pairs. To relieve this limitation, we present a fully unsupervised score-based generative model in sinogram domain for sparse-view CT reconstruction. Specifically, we first train a score-based generative model on full-view sinogram data and use multi-channel strategy to form highdimensional tensor as the network input to capture their prior distribution. Then, at the inference stage, the stochastic differential equation (SDE) solver and data-consistency step were performed iteratively to achieve fullview projection. Filtered back-projection (FBP) algorithm was used to achieve the final image reconstruction. Qualitative and quantitative studies were implemented to evaluate the presented method with several CT data. Experimental results demonstrated that our method achieved comparable or better performance than the supervised learning counterparts., Comment: 11 pages, 12 figures

Detailed pulmonary airway segmentation is a clinically important task for endobronchial intervention and treatment of peripheral located lung cancer lesions. Convolutional Neural Networks (CNNs) are promising tools for medical image analysis but have been performing poorly for cases when existing a significant imbalanced feature distribution, which is true for the airway data as the trachea and principal bronchi dominate most of the voxels whereas the lobar bronchi and distal segmental bronchi occupy a small proportion. In this paper, we propose a Differentiable Topology-Preserved Distance Transform (DTPDT) framework to improve the performance of airway segmentation. A Topology-Preserved Surrogate (TPS) learning strategy is first proposed to balance the training progress within-class distribution. Furthermore, a Convolutional Distance Transform (CDT) is designed to identify the breakage phenomenon with superior sensitivity and minimize the variation of the distance map between the predictionand ground-truth. The proposed method is validated with the publically available reference airway segmentation datasets. The detected rate of branch and length on public EXACT'09 and BAS datasets are 82.1%/79.6% and 96.5%/91.5% respectively, demonstrating the reliability and efficiency of the method in terms of improving the topology completeness of the segmentation performance while maintaining the overall topology accuracy., Comment: 10 pages

Magnetic resonance imaging serves as an essential tool for clinical diagnosis. However, it suffers from a long acquisition time. The utilization of deep learning, especially the deep generative models, offers aggressive acceleration and better reconstruction in magnetic resonance imaging. Nevertheless, learning the data distribution as prior knowledge and reconstructing the image from limited data remains challenging. In this work, we propose a novel Hankel-k-space generative model (HKGM), which can generate samples from a training set of as little as one k-space data. At the prior learning stage, we first construct a large Hankel matrix from k-space data, then extract multiple structured k-space patches from the large Hankel matrix to capture the internal distribution among different patches. Extracting patches from a Hankel matrix enables the generative model to be learned from redundant and low-rank data space. At the iterative reconstruction stage, it is observed that the desired solution obeys the learned prior knowledge. The intermediate reconstruction solution is updated by taking it as the input of the generative model. The updated result is then alternatively operated by imposing low-rank penalty on its Hankel matrix and data consistency con-strain on the measurement data. Experimental results confirmed that the internal statistics of patches within a single k-space data carry enough information for learning a powerful generative model and provide state-of-the-art reconstruction., Comment: 10 pages,10 figures,7 tables

The LIDC-IDRI database is the most popular benchmark for lung cancer prediction. However, with subjective assessment from radiologists, nodules in LIDC may have entirely different malignancy annotations from the pathological ground truth, introducing label assignment errors and subsequent supervision bias during training. The LIDC database thus requires more objective labels for learning-based cancer prediction. Based on an extra small dataset containing 180 nodules diagnosed by pathological examination, we propose to re-label LIDC data to mitigate the effect of original annotation bias verified on this robust benchmark. We demonstrate in this paper that providing new labels by similar nodule retrieval based on metric learning would be an effective re-labeling strategy. Training on these re-labeled LIDC nodules leads to improved model performance, which is enhanced when new labels of uncertain nodules are added. We further infer that re-labeling LIDC is current an expedient way for robust lung cancer prediction while building a large pathological-proven nodule database provides the long-term solution.

Deep learning based parallel imaging (PI) has made great progresses in recent years to accelerate magnetic resonance imaging (MRI). Nevertheless, it still has some limitations, such as the robustness and flexibility of existing methods have great deficiency. In this work, we propose a method to explore the k-space domain learning via robust generative modeling for flexible calibration-less PI reconstruction, coined weight-k-space generative model (WKGM). Specifically, WKGM is a generalized k-space domain model, where the k-space weighting technology and high-dimensional space augmentation design are efficiently incorporated for score-based generative model training, resulting in good and robust reconstructions. In addition, WKGM is flexible and thus can be synergistically combined with various traditional k-space PI models, which can make full use of the correlation between multi-coil data and realizecalibration-less PI. Even though our model was trained on only 500 images, experimental results with varying sampling patterns and acceleration factors demonstrate that WKGM can attain state-of-the-art reconstruction results with the well-learned k-space generative prior., Comment: 11pages, 12 figures

Recent evolution in deep learning has proven its value for CT-based lung nodule classification. Most current techniques are intrinsically black-box systems, suffering from two generalizability issues in clinical practice. First, benign-malignant discrimination is often assessed by human observers without pathologic diagnoses at the nodule level. We termed these data as "unsure data". Second, a classifier does not necessarily acquire reliable nodule features for stable learning and robust prediction with patch-level labels during learning. In this study, we construct a sure dataset with pathologically-confirmed labels and propose a collaborative learning framework to facilitate sure nodule classification by integrating unsure data knowledge through nodule segmentation and malignancy score regression. A loss function is designed to learn reliable features by introducing interpretability constraints regulated with nodule segmentation maps. Furthermore, based on model inference results that reflect the understanding from both machine and experts, we explore a new nodule analysis method for similar historical nodule retrieval and interpretable diagnosis. Detailed experimental results demonstrate that our approach is beneficial for achieving improved performance coupled with faithful model reasoning for lung cancer prediction. Extensive cross-evaluation results further illustrate the effect of unsure data for deep-learning-based methods in lung nodule classification.

Purpose: Bronchoscopic intervention is a widely-used clinical technique for pulmonary diseases, which requires an accurate and topological complete airway map for its localization and guidance. The airway map could be extracted from chest computed tomography (CT) scans automatically by airway segmentation methods. Due to the complex tree-like structure of the airway, preserving its topology completeness while maintaining the segmentation accuracy is a challenging task. Methods: In this paper, a long-term slice propagation (LTSP) method is proposed for accurate airway segmentation from pathological CT scans. We also design a two-stage end-to-end segmentation framework utilizing the LTSP method in the decoding process. Stage 1 is used to generate a coarse feature map by an encoder-decoder architecture. Stage 2 is to adopt the proposed LTSP method for exploiting the continuity information and enhancing the weak airway features in the coarse feature map. The final segmentation result is predicted from the refined feature map. Results: Extensive experiments were conducted to evaluate the performance of the proposed method on 70 clinical CT scans. The results demonstrate the considerable improvements of the proposed method compared to some state-of-the-art methods as most breakages are eliminated and more tiny bronchi are detected. The ablation studies further confirm the effectiveness of the constituents of the proposed method. Conclusion: Slice continuity information is beneficial to accurate airway segmentation. Furthermore, by propagating the long-term slice feature, the airway topology connectivity is preserved with overall segmentation accuracy maintained., Comment: Accepted by IPCAI 2022

Airway segmentation is critical for virtual bronchoscopy and computer-aided pulmonary disease analysis. In recent years, convolutional neural networks (CNNs) have been widely used to delineate the bronchial tree. However, the segmentation results of the CNN-based methods usually include many discontinuous branches, which need manual repair in clinical use. A major reason for the breakages is that the appearance of the airway wall can be affected by the lung disease as well as the adjacency of the vessels, while the network tends to overfit to these special patterns in the training set. To learn robust features for these areas, we design a multi-branch framework that adopts the geodesic distance transform to capture the intensity changes between airway lumen and wall. Another reason for the breakages is the intra-class imbalance. Since the volume of the peripheral bronchi may be much smaller than the large branches in an input patch, the common segmentation loss is not sensitive to the breakages among the distal branches. Therefore, in this paper, a breakage-sensitive regularization term is designed and can be easily combined with other loss functions. Extensive experiments are conducted on publicly available datasets. Compared with state-of-the-art methods, our framework can detect more branches while maintaining competitive segmentation performance., Comment: Accept as IEEE ISBI 2022 oral

The integration of compressed sensing and parallel imaging (CS-PI) provides a robust mechanism for accelerating MRI acquisitions. However, most such strategies require the explicit formation of either coil sensitivity profiles or a cross-coil correlation operator, and as a result reconstruction corresponds to solving a challenging bilinear optimization problem. In this work, we present an unsupervised deep learning framework for calibration-free parallel MRI, coined universal generative modeling for parallel imaging (UGM-PI). More precisely, we make use of the merits of both wavelet transform and the adaptive iteration strategy in a unified framework. We train a powerful noise conditional score network by forming wavelet tensor as the network input at the training phase. Experimental results on both physical phantom and in vivo datasets implied that the proposed method is comparable and even superior to state-of-the-art CS-PI reconstruction approaches.

Magnetic resonance imaging (MRI) is a widely used medical imaging modality. However, due to the limitations in hardware, scan time, and throughput, it is often clinically challenging to obtain high-quality MR images. In this article, we propose a method of using artificial intelligence to expand the channel to achieve the goal of generating the virtual coils. The main characteristic of our work is utilizing dummy variable technology to expand/extrapolate the receive coils in both image and k-space domains. The high-dimensional information formed by channel expansion is used as the prior information to improve the reconstruction effect of parallel imaging. Two main components are incorporated into the network design, namely variable augmentation technology and sum of squares (SOS) objective function. Variable augmentation provides the network with more high-dimensional prior information, which is helpful for the network to extract the deep feature information of the data. The SOS objective function is employed to solve the deficiency of k-space data training while speeding up convergence. Experimental results demonstrated its great potentials in super-resolution of MR images and accelerated parallel imaging reconstruction., Comment: arXiv admin note: text overlap with arXiv:2103.15061, arXiv:1907.03063, arXiv:1807.03039 by other authors