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Ubiquitous pockmarks in continental margins are important to understand the tectonic and sedimentary history and flow activity of their host margins. The study of an extensive field of pockmarks in the South China Sea (SCS) is important both scientifically and economically, for the exploration of oil, gas, and gas hydrate resources and the prevention and control of marine geological disasters. We report our new findings on the characteristics, distribution, and genesis of pockmarks in the SCS based on interpretation of high-resolution multibeam bathymetric data and multichannel seismic profiles collected in the past decade. Three pockmark fields (total area 572,824 km2), are recognized in the northern, western, and southern continental margins of the SCS. The pockmarks are highly variable in shape: circular, elliptical, crescent-shaped, elongated or forming a chain in plan view and U-, V- or W-shaped in cross-section. Pockmarks are normally 10–200 m in diameter, with maximum diameters/axial lengths of 7.3 km for circular, 5.5 km for elliptical, 8.6 km for crescent-shaped, 9.5 km for elongated, and 30 km for chain-type pockmarks. Pockmarks are normally less than 35 m deep, with a maximum depth of 341 m at the southwestern SCS margin. These pockmarks might have originated from methane seepages or from pore fluids from deeper sources, which migrated vertically along gas chimneys, mud diapirs, mud volcanoes, faults or buried channels. In addition to possible structural controls, the pockmark morphologies are affected by bottom currents. [ABSTRACT FROM AUTHOR]