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Chosen indicators of meat performance of 98 bulls of Czech Spotted cattle bred in elevation above 720 m above sea-level in the mountain region of Šumava are presented in the article. The fattening was realized in a barn with a deep litter. The feed ration consisted of haylage throughout the year. The bulls were divided into three groups according to their genotype - C100, C75-85R (CxR) and C75-85A (CxA). The highest live weight at slaughter was achieved in the group C100 with 650 kg with the average age of 726 days and the weight of the carcasses of 363.8 kg. On the other hand, the worst results were achieved in the group CxA. For comparison a group of 14 bulls of the Holstein breed was created (H100), which was fattened in the same conditions. The bulls achieved their highest live weight before slaughter (664.6 kg), but at the highest age (743 days). Statistically significant differences were proven in the meat performance after individual fathers – the best results were documented with the offspring of the bull BO-837. After the separation of the set of bulls according to live weight at the end of fattening, the highest results were achieved by the group above 700 kg. The best class using the SEUROP method was achieved by the group with slaughtering live weight between 650 kg and 700 kg.

In this article the results of rearing purebred meat breeds of cattle in the system without commercial milk production on a private farm situated at the foot of the mountains in South Bohemia are shown. The herd of dams consisted of 149 pcs. of the breed Charolaise (CH), Meat Simmental (MS), Blonde d´Aquitaine (BA), Limousine (LI) and Belgian Blue (BM). The average age at first calving was the lowest in the breed MS (941 days) and the highest in the breed CH (1087 days). The average length of the Between-calving interval of the herd was 442.6 days. The highest birth weight was achieved by the calves of the breed BA (51.2 kg) and the lowest by the breed MS (42.4 kg at P≤0.001). At the age of 120 and 210 days the highest live weight was proved in the breed CH (193.8 kg resp. 316.5 kg). The calves of the breed ET showed a significantly higher live weight only in the age of 120 days (difference of 12.8 kg at P≤0.01). The influence of bulls on the growth parameters of calves was proved within the breed CH in live weight at the age of 210 days.

Abstract Background Structural variants (SVs) represent an important source of genetic variation. One of the most critical problems in their detection is breakpoint uncertainty associated with the inability to determine their exact genomic position. Breakpoint uncertainty is a characteristic issue of structural variants detected via short-read sequencing methods and complicates subsequent population analyses. The commonly used heuristic strategy reduces this issue by clustering/merging nearby structural variants of the same type before the data from individual samples are merged. Results We compared the two most used dissimilarity measures for SV clustering in terms of Mendelian inheritance errors (MIE), kinship prediction, and deviation from Hardy–Weinberg equilibrium. We analyzed the occurrence of Mendelian-inconsistent SV clusters that can be collapsed into one Mendelian-consistent SV as a new measure of dataset consistency. We also developed a new method based on constrained clustering that explicitly identifies these types of clusters. Conclusions We found that the dissimilarity measure based on the distance between SVs breakpoints produces slightly better results than the measure based on SVs overlap. This difference is evident in trivial and corrected clustering strategy, but not in constrained clustering strategy. However, constrained clustering strategy provided the best results in all aspects, regardless of the dissimilarity measure used.

Seasonal changes in the biomass and length of fine roots and their growth into ingrowth cores were measured in a chronosequence of post-mining sites represented by 6-, 16-, 22-, and 45-year-old study sites, located on spoil heaps after brown coal mining in the Sokolov coal mining district. The depth distribution of roots differed between herbs and woody species and also with succession age. At the 22-year-old site, the greatest root biomass was found in the fermentation layer (248.9 ± 113.4 g m2) and decreased with depth. In the case of herbaceous root biomass, the greatest root biomass was found in the 16-year-old site (63.7 ± 15.2 g m2), again in the fermentation layer, which decreased with depth. Overall root biomass increased with succession age, reaching its highest value in the 45-year-old site. In younger sites, the root biomass was dominated by herbs and grasses, whereas woody roots dominated in older sites. After one year, the root biomass in ingrowth cores reached up to one quarter of in situ biomass, which would suggest a low turnover rate. However, the difference between the minimum and the maximum value during the course of one year represents more than half of the mean value. Analysis of the number of arbuscules on roots of Plantago lanceolata sown in soil from all succession stages revealed extensive colonization by arbuscular mycorrhizal fungi in early succession (14.2 ± 0.3 mm root−1), decreasing with succession age, and reaching the lowest value in the 22-year-old site (2.4 ± 0.08 mm root−1) before increasing in the oldest site. Colonization of roots by ectomycorrhizal fungi increased with succession age, reaching a maximum in the 16-year-old site. In comparison with the extent of ectomycorrhizal colonization in relation to root length, the greatest length of ectomycorrhiza-colonized roots was found in the 22-year-old site; hence, the pattern was the opposite of the one observed in arbuscular mycorrhiza-colonized roots.

BACKGROUND:Amniotic fluid is clinically accessible via amniocentesis and its protein composition may correspond to birth timing. Early changes in the amniotic fluid proteome could therefore be associated with the subsequent development of spontaneous preterm delivery. OBJECTIVE:The main objective of this study was to perform unbiased proteomics analysis of the association between mid-trimester amniotic fluid proteome and spontaneous preterm delivery and gestational duration, respectively. A secondary objective was to validate and replicate the findings by enzyme-linked immunosorbent assay using a second independent cohort. METHODS:Women undergoing a mid-trimester genetic amniocentesis at Sahlgrenska University Hospital/Östra between September 2008 and September 2011 were enrolled in this study, designed in three analytical stages; 1) an unbiased proteomic discovery phase using LC-MS analysis of 22 women with subsequent spontaneous preterm delivery (cases) and 37 women who delivered at term (controls), 2) a validation phase of proteins of interest identified in stage 1, and 3) a replication phase of the proteins that passed validation using a second independent cohort consisting of 20 cases and 40 matched controls. RESULTS:Nine proteins were nominally significantly associated with both spontaneous preterm delivery and gestational duration, after adjustment for gestational age at sampling, but none of the proteins were significant after correction for multiple testing. Several of these proteins have previously been described as being associated with spontaneous PTD etiology and six of them were thus validated using enzyme linked immunosorbent assay. Two of the proteins passed validation; Neutrophil gelatinase-associated lipocalin and plasminogen activator inhibitor 1, but the results could not be replicated in a second cohort. CONCLUSIONS:Neutrophil gelatinase-associated lipocalin and Plasminogen activator inhibitor 1 are potential biomarkers of spontaneous preterm delivery and gestational duration but the findings could not be replicated. The negative findings are supported by the fact that none of the nine proteins from the exploratory phase were significant after correction for multiple testing.

Beef cattle rearing in Czech Republic started in 1990 when 12 major breeds of beef cattle were imported. Beef cattle rearing is of great importance for rural development and maintenance of permanent grasslands which covers 22.8% of agricultural land. Monitoring of selected beef cattle breeds was carried out in the Šumava region. Thirtyone farms with a total of 1 874 dams and 6 488 calves of seven beef breeds, i.e. Aberdeen Angus (G), Galloway (W), Hereford (U), Highland (E), Charolais (T), Beef Simmental ( S) and Salers (Z) were monitored over a period of 5 years. The main calving period in this region was from January to April when, regardless of the altitude of farms, 87.3% of calves were born on average. On the farms below 600 m.a.s.l. 89.2% and on the farms above 600 m a.s.l. 85.7% of calves were born during this period respectively. In the breeds Z, E and W 100% of calvings were without dificulties. The best results in the growth up to 210 days of age were achieved by the breeds Z (285.6 kg), S (279.4 kg) and G (273.1 kg of live weight). The G and S breeds were found to favour growth in the areas up to 600 m.

The paper presents a brief overview of experiments on volumetric mass transfer coefficient in bubble columns. The available experimental data published are often incomparable due to the different type of gas distributor and different operating conditions used by various authors. Moreover, the value of the coefficient obtained experimentally is very sensitive to the particular method and to the physical models used in its evaluation. It follows that the Dynamic Pressure Method (DPM) is able to provide physically correct values not only in lab-scale contactors but also in pilot-scale reactors. However, the method was not correctly proven in bubble columns. In present experiments, DPM was employed in a laboratory-scale bubble column with a coalescent phase and tested in the pure heterogeneous flow regime. The method was successfully validated by the measurements under two different conditions relevant to the mass transfer. First, the ideal pressure step was compared with the non-ideal pressure step. Second, the pure oxygen absorption was compared with the simultaneous oxygen-and-nitrogen absorption. The obtained results proved that DPM is suitable for measuring the mass transport in bubble columns and to provide reliable data of volumetric mass transfer coefficient.

One of the basic conditions of the economical success in milk production is the high and periodic reproduction of the cows. That means the parturition of a healthy calf from every cow per a year. The development and level of reproduction functions is very susceptible to the quantity and mainly quality of nutrition. The insuffi ciency in nutrition is strongly related to the fertility. The aim of this study was to evaluate the reproduction indicators depending upon the level of the milk yield and body condition of the Holstein cows at the family-owned farm. The basic dataset was obtained during the years 2004 – 2007. The milk yield and fertility data were gained from the herd records. The extreme values were removed from the basic set. Body condition score was evaluated every month. The groups according to the milk yield level and body condition score were evaluated. The basic statistical characteristics were determined in the groups of cows and in the evaluated sets. The effect of particular factors was proved by the one-factorial analysis of variance ANOVA. Increasing milk yield in the groups with milk yield up to 7000 kg of milk, 7000-8000 kg and more than 8000 kg had negative impact on the reproduction indicators. The differences in the length of calving to fififi rst service interval among particular groups were statistically signifififi cant (P ≥ 0.01). The average length of this interval was 96, 111 and 122 days for 1st, 2nd and 3rd group, respectively. In addition, the average length of calving to conception (service period) interval was 154, 165 and 171 days. There were found no signifi cant differences in numbers of services per conception. The average BCS at calving was 3.59 points. After calving BCS level decreased till the 6th month of lactation, where its level 2.43 points, then the BCS level increased. Average BCS level at conception was under 2.5 points. The variation of BCS during the lactation was 2 points.

Using the tests of methanogenic activity (TMA) changes in methane yield (YCH4) and anaerobic degradability (Dc) of organic matter of feeds and excrements were studied in an experimental group of six horses while complete analytical methods were applied (N-compound matters, proteins, non-protein N-compound matters, fat, nitrogen-free extract, ash, crude fibre, organic matter, NDF, ADF, hemicelluloses, cellulose, lignin and chemical oxygen demand COD) and the material balance was determined. The horses utilised 48.8% of organic matter of feeds in dry matter while the daily weight of droppings was 21 kg with 5.20% of dry matter and 4 kg of urine with 7% of organic matters. It is important that the theoretical methane yield per 24 hours corresponding to the organic matter of ingested feeds which was transferred to excrements is 1.771 m3 CH4 at 0°C and 1 013.25 hPa while the actual daily methane yield of droppings is 1.739 m3 CH4 at 0°C and 1 013.25 hPa, i.e. practically identical, because the yield from urine organic matters was not included in the actual daily methane yield. Because the anaerobic degradability of the used feed mixture and horse droppings is practically identical, it is obvious that besides the enteric fermentation according to the reaction CO2 + 4 H2 → CH4 + 2 H2O by hydrogenotrophic methanogens no classical anaerobic digestion takes place in the digestive tract of horses; it means that the horse breeding sector is not a factor contaminating the atmosphere by methane.

Background: Amniotic fluid is clinically accessible via amniocentesis and its protein composition may correspond to birth timing. Early changes in the amniotic fluid proteome could therefore be associated with the subsequent development of spontaneous preterm delivery., Objective: The main objective of this study was to perform unbiased proteomics analysis of the association between mid-trimester amniotic fluid proteome and spontaneous preterm delivery and gestational duration, respectively. A secondary objective was to validate and replicate the findings by enzyme-linked immunosorbent assay using a second independent cohort., Methods: Women undergoing a mid-trimester genetic amniocentesis at Sahlgrenska University Hospital/Östra between September 2008 and September 2011 were enrolled in this study, designed in three analytical stages; 1) an unbiased proteomic discovery phase using LC-MS analysis of 22 women with subsequent spontaneous preterm delivery (cases) and 37 women who delivered at term (controls), 2) a validation phase of proteins of interest identified in stage 1, and 3) a replication phase of the proteins that passed validation using a second independent cohort consisting of 20 cases and 40 matched controls., Results: Nine proteins were nominally significantly associated with both spontaneous preterm delivery and gestational duration, after adjustment for gestational age at sampling, but none of the proteins were significant after correction for multiple testing. Several of these proteins have previously been described as being associated with spontaneous PTD etiology and six of them were thus validated using enzyme linked immunosorbent assay. Two of the proteins passed validation; Neutrophil gelatinase-associated lipocalin and plasminogen activator inhibitor 1, but the results could not be replicated in a second cohort., Conclusions: Neutrophil gelatinase-associated lipocalin and Plasminogen activator inhibitor 1 are potential biomarkers of spontaneous preterm delivery and gestational duration but the findings could not be replicated. The negative findings are supported by the fact that none of the nine proteins from the exploratory phase were significant after correction for multiple testing., Competing Interests: The authors have declared that no competing interests exist.