8 results on '"Zarifi I"'
Search Results
2. l-Carnitine accelerates the in vitro regeneration of neural network from adult murine brain cells
- Author
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Athanassakis, I., primary, Zarifi, I., additional, Evangeliou, A., additional, and Vassiliadis, S., additional
- Published
- 2002
- Full Text
- View/download PDF
3. bHLH proteins involved in Drosophila neurogenesis are mutually regulated at the level of stability.
- Author
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Kiparaki M, Zarifi I, and Delidakis C
- Subjects
- Amino Acid Sequence, Animals, Animals, Genetically Modified, Basic Helix-Loop-Helix Transcription Factors chemistry, Basic Helix-Loop-Helix Transcription Factors genetics, Blotting, Western, Cell Line, DNA-Binding Proteins chemistry, DNA-Binding Proteins genetics, Drosophila Proteins chemistry, Drosophila Proteins genetics, Drosophila melanogaster genetics, Drosophila melanogaster growth & development, Gene Expression Regulation, Developmental, Mutation, Phosphorylation, Proteasome Endopeptidase Complex metabolism, Protein Binding, Protein Multimerization, Receptors, Notch genetics, Receptors, Notch metabolism, Repressor Proteins genetics, Repressor Proteins metabolism, Transcription Factors chemistry, Transcription Factors genetics, Basic Helix-Loop-Helix Transcription Factors metabolism, DNA-Binding Proteins metabolism, Drosophila Proteins metabolism, Drosophila melanogaster metabolism, Neurogenesis, Transcription Factors metabolism
- Abstract
Proneural bHLH activators are expressed in all neuroectodermal regions prefiguring events of central and peripheral neurogenesis. Drosophila Sc is a prototypical proneural activator that heterodimerizes with the E-protein Daughterless (Da) and is antagonized by, among others, the E(spl) repressors. We determined parameters that regulate Sc stability in Drosophila S2 cells. We found that Sc is a very labile phosphoprotein and its turnover takes place via at least three proteasome-dependent mechanisms. (i) When Sc is in excess of Da, its degradation is promoted via its transactivation domain (TAD). (ii) In a DNA-bound Da/Sc heterodimer, Sc degradation is promoted via an SPTSS phosphorylation motif and the AD1 TAD of Da; Da is spared in the process. (iii) When E(spl)m7 is expressed, it complexes with Sc or Da/Sc and promotes their degradation in a manner that requires the corepressor Groucho and the Sc SPTSS motif. Da/Sc reciprocally promotes E(spl)m7 degradation. Since E(spl)m7 is a direct target of Notch, the mutual destabilization of Sc and E(spl) may contribute in part to the highly conserved anti-neural activity of Notch. Sc variants lacking the SPTSS motif are dramatically stabilized and are hyperactive in transgenic flies. Our results propose a novel mechanism of regulation of neurogenesis, involving the stability of key players in the process., (© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2015
- Full Text
- View/download PDF
4. Essential roles of Da transactivation domains in neurogenesis and in E(spl)-mediated repression.
- Author
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Zarifi I, Kiparaki M, Koumbanakis KA, Giagtzoglou N, Zacharioudaki E, Alexiadis A, Livadaras I, and Delidakis C
- Subjects
- Amino Acid Sequence, Animals, Basic Helix-Loop-Helix Transcription Factors genetics, Binding Sites, Cell Line, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Drosophila Proteins genetics, Drosophila melanogaster genetics, Drosophila melanogaster growth & development, Gene Expression Regulation, Developmental, Insecta, Molecular Sequence Data, Plasmids, Polymerization, Protein Binding, Protein Structure, Secondary, Protein Structure, Tertiary, Repressor Proteins genetics, Signal Transduction genetics, Transcription Factors genetics, Transcription Factors metabolism, Transfection, Basic Helix-Loop-Helix Transcription Factors metabolism, Drosophila Proteins metabolism, Drosophila melanogaster metabolism, Neurogenesis genetics, Repressor Proteins metabolism, Transcriptional Activation
- Abstract
E proteins are a special class of basic helix-loop-helix (bHLH) proteins that heterodimerize with many bHLH activators to regulate developmental decisions, such as myogenesis and neurogenesis. Daughterless (Da) is the sole E protein in Drosophila and is ubiquitously expressed. We have characterized two transcription activation domains (TADs) in Da, called activation domain 1 (AD1) and loop-helix (LH), and have evaluated their roles in promoting peripheral neurogenesis. In this context, Da heterodimerizes with proneural proteins, such as Scute (Sc), which is dynamically expressed and also contributes a TAD. We found that either one of the Da TADs in the Da/Sc complex is sufficient to promote neurogenesis, whereas the Sc TAD is incapable of doing so. Besides its transcriptional activation role, the Da AD1 domain serves as an interaction platform for E(spl) proteins, bHLH-Orange family repressors which antagonize Da/Sc function. We show that the E(spl) Orange domain is needed for this interaction and strongly contributes to the antiproneural activity of E(spl) proteins. We present a mechanistic model on the interplay of these bHLH factors in the context of neural fate assignment.
- Published
- 2012
- Full Text
- View/download PDF
5. Role of the Sc C terminus in transcriptional activation and E(spl) repressor recruitment.
- Author
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Giagtzoglou N, Koumbanakis KA, Fullard J, Zarifi I, and Delidakis C
- Subjects
- Amino Acid Sequence, Animals, Animals, Genetically Modified, Basic Helix-Loop-Helix Transcription Factors, Binding Sites, Conserved Sequence, DNA-Binding Proteins antagonists & inhibitors, DNA-Binding Proteins metabolism, Dimerization, Drosophila Proteins antagonists & inhibitors, Enhancer Elements, Genetic genetics, Helix-Loop-Helix Motifs, Molecular Sequence Data, Protein Binding, Protein Structure, Quaternary, Protein Structure, Tertiary, Repressor Proteins chemistry, Repressor Proteins genetics, Transcription Factors antagonists & inhibitors, Two-Hybrid System Techniques, DNA-Binding Proteins chemistry, DNA-Binding Proteins genetics, Drosophila Proteins chemistry, Drosophila Proteins genetics, Drosophila Proteins metabolism, Drosophila melanogaster genetics, Genes, Insect genetics, Repressor Proteins metabolism, Transcription Factors chemistry, Transcription Factors genetics, Transcription Factors metabolism, Transcriptional Activation
- Abstract
Neurogenesis in all animals is triggered by the activity of a group of basic helix-loop-helix transcription factors, the proneural proteins, whose expression endows ectodermal regions with neural potential. The eventual commitment to a neural precursor fate involves the interplay of these proneural transcriptional activators with a number of other transcription factors that fine tune transcriptional responses at target genes. Most prominent among the factors antagonizing proneural protein activity are the HES basic helix-loop-helix proteins. We have previously shown that two HES proteins of Drosophila, E(spl)mgamma and E(spl)m7, interact with the proneural protein Sc and thereby get recruited onto Sc target genes to repress transcription. Using in vivo and in vitro assays we have now discovered an important dual role for the Sc C-terminal domain. On one hand it acts as a transcription activation domain, and on the other it is used to recruit E(spl) proteins. In vivo, the Sc C-terminal domain is required for E(spl) recruitment in an enhancer context-dependent fashion, suggesting that in some enhancers alternative interaction surfaces can be used to recruit E(spl) proteins.
- Published
- 2005
- Full Text
- View/download PDF
6. Effect of beta-lactam antibiotics on the in vitro development of resistance in Pseudomonas aeruginosa.
- Author
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Carsenti-Etesse H, Cavallo JD, Roger PM, Ziha-Zarifi I, Plesiat P, Garrabe E, and Dellamonica P
- Subjects
- Bacterial Outer Membrane Proteins metabolism, Cephalosporins pharmacology, Microbial Sensitivity Tests, Pseudomonas aeruginosa genetics, beta-Lactamases metabolism, Anti-Bacterial Agents pharmacology, Pseudomonas aeruginosa drug effects, beta-Lactam Resistance genetics
- Abstract
Objective: To investigate whether stepwise selection of resistance mutations maz mirror the continued bacterial exposure to antibiotics that occurs in the clinical setting., Methods: We examined the in vitro development of resistance to a number of commonly used antibiotics (cefepime, cefpirome, ceftazidime, cefataxime, piperacillin and imipenem) in Pseudomonas aeruginosa, a significant nosocomial pathogen. Stepwise resistance was assessed by serial passage of colonies located nearest to the inhibition zone on antibiotic-containing gradient plates., Results: The lowest frequencies of spontaneous resistance mutations were found with cefepime and imipenem; these drugs also resulted in the slowest appearance of resistance of spontaneous resistance mutations. In five wild-type P. aeruginosa strains, cefepime-selected isolates required a mean of 30 passages to reach resistance; resistance occurred more rapidly in strains selected with other cephalosporins. P. aeruginosa strains that produced beta-lactamase or non-enzymatic resistance generally developed resistance more rapidly than wild-type strains. For most strains, resistance to all antibiotics except imipenem correlated with increased levels of beta-lactamase activity. Cross-resistance of cephalosporin-selected resistant mutants to other cephalosporins was common,. Cephalosporin-resistant retained susceptibility to imipenem and ciprofloxacin., Conclusions: From our in vitro study, we can conclude that the rate of development of resistance of P. aeruginosa is lower with cefepime compared with other cephalosporines.
- Published
- 2002
7. Effect of beta-lactam antibiotics on the in vitro development of resistance in Pseudomonas aeruginosa.
- Author
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Carsenti-Etesse H, Cavallo JD, Roger PM, Ziha-Zarifi I, Plesiat P, Garrabé E, and Dellamonica P
- Subjects
- Bacterial Outer Membrane Proteins metabolism, Cephalosporins pharmacology, Microbial Sensitivity Tests, Mutation, Pseudomonas aeruginosa genetics, Pseudomonas aeruginosa growth & development, Serial Passage, beta-Lactamases metabolism, Anti-Bacterial Agents pharmacology, Cephalosporin Resistance genetics, Pseudomonas aeruginosa drug effects, beta-Lactam Resistance genetics
- Abstract
Objective: To investigate whether stepwise selection of resistance mutations may mirror the continued bacterial exposure to antibiotics that occurs in the clinical setting., Methods: We examined the in vitro development of resistance to a number of commonly used antibiotics (cefepime, cefpirome, ceftazidime, cefotaxime, piperacillin and imipenem) in Pseudomonas aeruginosa, a significant nosocomial pathogen. Stepwise resistance was assessed by serial passage of colonies located nearest to the inhibition zone on antibiotic-containing gradient plates., Results: The lowest frequencies of spontaneous resistance mutations were found with cefepime and imipenem; these drugs also resulted in the slowest appearance of resistance of spontaneous resistance mutations. In five wild-type P. aeruginosa strains, cefepime-selected isolates required a mean of 30 passages to reach resistance; resistance occurred more rapidly in strains selected with other cephalosporins. P. aeruginosa strains that produced beta-lactamase or non-enzymatic resistance generally developed resistance more rapidly than wild-type strains. For most strains, resistance to all antibiotics except imipenem correlated with increased levels of beta-lactamase activity. Cross-resistance of cephalosporin-selected resistant mutants to other cephalosporins was common. Cephalosporin-resistant strains retained susceptibility to imipenem and ciprofloxacin., Conclusions: From our in vitro study, we can conclude that the rate of development of resistance of P. aeruginosa is lower with cefepime compared with other cephalosporines.
- Published
- 2001
- Full Text
- View/download PDF
8. In vivo emergence of multidrug-resistant mutants of Pseudomonas aeruginosa overexpressing the active efflux system MexA-MexB-OprM.
- Author
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Ziha-Zarifi I, Llanes C, Köhler T, Pechere JC, and Plesiat P
- Subjects
- Anti-Bacterial Agents therapeutic use, Bacterial Proteins genetics, Drug Resistance, Microbial genetics, Genetic Complementation Test, Humans, Operon, Pseudomonas Infections microbiology, Pseudomonas aeruginosa metabolism, Bacterial Proteins biosynthesis, Drug Resistance, Multiple genetics, Pseudomonas aeruginosa drug effects, Pseudomonas aeruginosa genetics
- Abstract
During a 6-month period, 21 pairs of Pseudomonas aeruginosa isolates susceptible (pretherapy) and resistant (posttherapy) to antipseudomonal beta-lactam antibiotics were isolated from hospitalized patients. In vivo emergence of beta-lactam resistance was associated with the overexpression of AmpC beta-lactamase in 10 patients. In the other 11 patients, the posttherapy isolates produced only low, basal levels of beta-lactamase and had increased levels of resistance to a variety of non-beta-lactam antibiotics (e.g., quinolones, tetracyclines, and trimethoprim) compared with the levels of beta-lactamase production and resistance of their pretherapy counterparts. These data suggested the involvement of the MexA-MexB-OprM active efflux system in the multidrug resistance phenotype of the posttherapy strains. Immunoblotting of the outer membrane proteins of these 11 bacterial pairs with a specific polyclonal antibody raised against OprM demonstrated the overexpression of OprM in all the posttherapy isolates. To determine whether mutations in mexR, the regulator gene of the mexA-mexB-oprM efflux operon, could account for the overproduction of the efflux system, sequencing experiments were carried out with the 11 bacterial pairs. Eight posttherapy isolates were found to contain insertions or deletions that led to frameshifts in the coding sequences of mexR. Two resistant strains had point mutations in mexR that yielded single amino acid changes in the protein MexR, while another strain did not show any mutation in mexR or in the promoter region upstream of mexR. Introduction of a plasmid-encoded wild-type mexR gene into five posttherapy isolates partially restored the susceptibility of the bacteria to selected antibiotics. These results indicate that in the course of antimicrobial therapy multidrug-resistant active efflux mutants overexpressing the MexA-MexB-OprM system may emerge as a result of mutations in the mexR gene.
- Published
- 1999
- Full Text
- View/download PDF
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