13 results on '"Yuzhen, Xiao"'
Search Results
2. Effect of Metal-Binding Antimicrobial Peptide SIF4 on Topoisomerases Activity and Intracellular Nucleic Acid Biosynthesis in Escherichia coli
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LI Yuzhen, XIAO Huaiqiu, ZHOU Huiheng, LI Lan, KUANG Yan, LIU Miao, ZHAO Mouming
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metal-binding antimicrobial peptide ,escherichia coli ,topoisomerase ,nucleic acid ,antimicrobial agent ,Food processing and manufacture ,TP368-456 - Abstract
To systematically elucidate how metal-binding antimicrobial peptide SIF4 exerts its antimicrobial activity by targeting DNA topoisomerase without destroying the cytoplasmic membrane, Escherichia coli was used as a model strain to investigate the binding mode of SIF4 with its genomic DNA and the impact of SIF4 on DNA topoisomerase I and II activities and intracellular nucleic acid biosynthesis. Results showed that SIF4 could bind to genomic DNA in a manner similar to ethidium bromide (EB) intercalation with strong inhibitory effect on topoisomerase I but weak effect on topoisomerase II, and catalyzed RNA transcription to exert antimicrobial activity by interfering with the unwinding of negative DNA supercoils and RNA polymerase binding. It was also found that the biosynthesis of intracellular DNA and RNA was inhibited to different degrees after 12 h treatment with SIF4, which exhibited a good dose-effect relationship. There was no significant difference in the amounts of intracellular DNA and RNA between the 1/2 minimum inhibitory concentration (MIC) group and the control group (P > 0.05), but there was a significant difference between the MIC and 2 MIC groups and the control group (P < 0.05). Our results may provide theoretical support for the application of SIF4 in the biocontrol of foodborne E. coli.
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- 2024
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3. Metal-Binding Antimicrobial Peptide SIF4 Kills Escherichia coli by Targeting Cytoplasmic Biomacromolecules without Cytoplasmic Membrane Damage: A Mechanistic Study
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LI Yuzhen, XIAO Huaiqiu, LIU Miao, WANG Lin, ZENG Mengqi, ZHAO Mouming
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metal antimicrobial peptide ,escherichia coli ,intracellular biomacromolecules ,non-cytoplasmic membrane damage ,antimicrobial mechanism ,Food processing and manufacture ,TP368-456 - Abstract
To explore how metal-binding antimicrobial peptide SIF4 kills foodborne Escherichia coli by targeting nucleic acid and protein in the cytoplasmic membrane without cytoplasmic membrane damage, the effect of SIF4 on intracellular nucleic acid biosynthesis was investigated, and fluorescence spectral analysis of the competition between SIF4 and ethidium bromide (EB) for binding to genomic DNA, ultraviolet (UV) spectral analysis of the interaction between SIF4 and genomic DNA, and the binding mode between SIF4 and genomic DNA were studied. Besides, the effect of SIF4 on intracellular protein biosynthesis was systematically evaluated. Results demonstrated that SIF4 could bind to E. coli genomic DNA through groove insertion and inhibit dose-dependently nucleic acid biosynthesis. Fluorescence spectral analysis showed that SIF4 could compete with EB for binding to genomic DNA through intercalation binding and electrostatic adsorption. UV spectroscopy showed that combination with SIF4 changed the molecular conformation of genomic DNA, but did not break its double strand structure. Circular dichroism (CD) spectroscopy showed that the base stacking force of genomic DNA was weakened, the double helix structure became loose, and the genomic DNA structure was changed from B to C configuration after combination with SIF4. In addition, SIF4 could significantly affect intracellular protein biosynthesis, and its inhibition effect was positively correlated with the treatment time and dose of SIF4. It is believed that SIF4 can enter the DNA groove through electrostatic adsorption or intercalation with genomic DNA, affecting DNA replication, RNA transcriptional biomass and protein translation to produce antimicrobial effect against Escherichia coli without cytoplasmic membrane damage. These results can provide support for the biocontrol of foodborne E. coli.
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- 2023
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4. Inhibitory Mechanism of Metal-Binding Antimicrobial Peptide SIF4 on Respiratory and Energy Metabolism of Escherichia coli
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LI Yuzhen, XIAO Huaiqiu, LIU Miao, WANG Lin, ZENG Mengqi, ZHAO Mouming
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escherichia coli ,metal-binding antimicrobial peptide ,respiratory metabolic pathway ,energy metabolism ,antimicrobial mechanism ,Food processing and manufacture ,TP368-456 - Abstract
This study aimed to systematically elaborate on the inhibitory mechanism of metal-binding antimicrobial peptide SIF4 on the respiratory and energy metabolism of Escherichia coli. By analyzing changes in the metabolic activity, individual and synergistic respiratory inhibition rate, cytoplasmic membrane ion channel ATPase and intracellular ATP level of E. coli after being treated with SIF4, the effects of SIF4 on the cell metabolic activity, respiratory metabolic pathway, cytoplasmic membrane ion channel ATPase and intracellular ATP biosynthesis were studied. Results showed that the metabolic activity of E. coli decreased significantly with increasing dose of SIF4 (P < 0.05), and decreased by 70.41% in the 2 × minimal inhibitory concentration (MIC) group compared with the control group. SIF4 had good inhibitory effect on the respiration of Escherichia coli, with an inhibition rate of (19.387 ± 0.168)% and (25.222 ± 0.326)% at MIC and 2 × MIC, respectively. The synergistic respiratory inhibition rate of SIF4 combined with iodoacetic acid was the lowest ((19.982 ± 0.133)%), indicating that SIF4 could exhibit high antimicrobial activity mainly by inhibiting the glycolysis pathway of E. coli. The activities of cytoplasmic membrane ion channel Na+K+-ATPase and Ca2+Mg2+-ATPase decreased after treatment with SIF4, and this effect was positively correlated with SIF4 dose and treatment time, but weaker than that of the positive control Triton X-100. As SIF4 dose and treatment time increased, the intracellular ATP concentration decreased significantly, and after 12 h, the intracellular ATP concentration in the 2 × MIC group was significantly lower than that in the control group but higher than that in the positive control group (P < 0.05). All results confirmed that SIF4 could exhibit high antimicrobial activity against E. coli by interfering with respiratory metabolism, weakening cytoplasmic membrane ion channel ATPase activity and inhibiting the biosynthesis of intracellular ATP, which can provide theoretical support for the biocontrol of foodborne E. coli.
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- 2023
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5. Modulation of Macrophage Function by Bioactive Wound Dressings with an Emphasis on Extracellular Matrix-Based Scaffolds and Nanofibrous Composites
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Tao He, Yuzhen Xiao, Zhijun Guo, Yifeng Shi, Qiuwen Tan, Yizhou Huang, and Huiqi Xie
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bioactive materials ,macrophage polarization ,chronic wounds ,wound dressing ,extracellular matrix scaffolds ,nanofibrous composites ,Pharmacy and materia medica ,RS1-441 - Abstract
Bioactive wound dressings that are capable of regulating the local wound microenvironment have attracted a very large interest in the field of regenerative medicine. Macrophages have many critical roles in normal wound healing, and the dysfunction of macrophages significantly contributes to impaired or non-healing skin wounds. Regulation of macrophage polarization towards an M2 phenotype provides a feasible strategy to enhance chronic wound healing, mainly by promoting the transition of chronic inflammation to the proliferation phase of wound healing, upregulating the level of anti-inflammatory cytokines around the wound area, and stimulating wound angiogenesis and re-epithelialization. Based on this, modulation of macrophage functions by the rational design of bioactive scaffolds has emerged as a promising way to accelerate delayed wound healing. This review outlines current strategies to regulate the response of macrophages using bioactive materials, with an emphasis on extracellular matrix-based scaffolds and nanofibrous composites.
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- 2023
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6. Safety Risk Assessment in Urban Public Space Using Structural Equation Modelling
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Xiaojuan Li, Chen Wang, Mukhtar A. Kassem, Zhou Zhang, Yuzhen Xiao, and Mingchao Lin
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urban public safety ,safety risk ,influencing factors ,structural equation modelling ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Urban public space is essential in improving population carrying capacity and economic efficiency. However, the characteristics of urban public space, such as complex structure, relatively close and large population mobility, make it prone to fire, stampedes and other safety accidents. This study aims to develop a systematic approach to identify the key factors that affect the safety risk of urban public spaces and assess the risk. Based on the literature review, 250 structured questionnaires were randomly distributed. Finally, 219 available questionnaires were collected. Based on the above data, a model of urban public space is built using SEM. The results show that construction equipment, road traffic, social governance, urban environment and behaviour significantly affect public space (from high to low). Specifically, regardless of the model or actual situation, we should pay attention to fire awareness and empirical prevention awareness. Based on previous studies, this study considers the influencing factors of urban public safety risks hierarchically and more practically and makes contributions to the field of urban safety. In addition, governments and developers can conduct valuable actual scenario analysis from this study.
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- 2022
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7. SR-DeblurUGAN: An End-to-End Super-Resolution and Deblurring Model with High Performance
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Yuzhen Xiao, Jidong Zhang, Wei Chen, Yichen Wang, Jianing You, and Qing Wang
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UAV ,image deblurring ,super-resolution ,UNet ,generative adversarial network ,Motor vehicles. Aeronautics. Astronautics ,TL1-4050 - Abstract
In this paper, we consider the difference in the abstraction level of features extracted by different perceptual layers and use a weighted perceptual loss-based generative adversarial network to deblur the UAV images, which removes the blur and restores the texture details of the images well. The perceptual loss is used as an objective evaluation index for training process monitoring and model selection, which eliminates the need for extensive manual comparison of the deblurring effect and facilitates model selection. The UNet jump connection structure facilitates the transfer of features across layers in the network, reduces the learning difficulty of the generator, and improves the stability of adversarial training.
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- 2022
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8. UBE2T is upregulated, predicts poor prognosis, and promotes cell proliferation and invasion by promoting epithelial-mesenchymal transition via inhibiting autophagy in an AKT/mTOR dependent manner in ovarian cancer
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Wei Huang, Hongyan Huang, Yuzhen Xiao, Lei Wang, Tingting Zhang, Xiaoling Fang, and Xiaomeng Xia
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Ovarian Neoplasms ,Epithelial-Mesenchymal Transition ,TOR Serine-Threonine Kinases ,Cell Biology ,Cell Line, Tumor ,Ubiquitin-Conjugating Enzymes ,Autophagy ,Humans ,Female ,Proto-Oncogene Proteins c-akt ,Molecular Biology ,Research Paper ,Cell Proliferation ,Developmental Biology - Abstract
Aberrant upregulation and oncogenic roles of UBE2T are revealed in several cancers. However, the expression, clinical significance, and functions of UBE2T have not been explored in ovarian cancer (OC). In this study, the expression of UBE2T and its relation with clinicopathological features and prognosis of OC patients were explored by analyzing online data and experimental data. Besides, the functions of UBE2T in OC cells were investigated by in vitro experiments, including CCK-8, plate clone formation, and Transwell assays. Finally, the underlying mechanism of UBE2T associated functions in OC was analyzed. The results indicated that UBE2T was significantly upregulated in OC tissues. UBE2T expression was notably correlated with clinical features, such as primary T stage and FIGO stage in OC patients. UBE2T, acting as an independent prognostic indicator, was inversely associated with the prognosis of OC patients. The UBE2T knockdown remarkably suppressed the growth, proliferation, and invasion of OC cells, indicated by impaired cell viability, fewer cell clones, and invasive cells. Mechanistically, UBE2T depletion suppressed epithelial-mesenchymal transition (EMT), which was caused by autophagy activation due to inactivation of AKT/mTOR in OC cells with UBE2T knockdown. Collectively, our findings confirm that UBE2T upregulation predicts poor prognosis and promotes malignant progression in OC. UBE2T upregulation suppresses autophagy and subsequently boosts EMT via activating the AKT/mTOR axis, which accounts for the underlying mechanism of oncogenic roles of UBE2T in OC.
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- 2022
9. miR-182-5p and miR-96-5p Target PIAS1 and Mediate the Negative Feedback Regulatory Loop between PIAS1 and STAT3 in Endometrial Cancer
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Hongyan Huang, Xiaomeng Xia, Xiaoling Fang, Wei Huang, Lei Wang, Yuzhen Xiao, Min Wang, and Tingting Zhang
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0301 basic medicine ,Messenger RNA ,biology ,SUMO protein ,Cell Biology ,General Medicine ,stat ,Ubiquitin ligase ,Gene expression profiling ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Downregulation and upregulation ,030220 oncology & carcinogenesis ,Genetics ,biology.protein ,Cancer research ,Protein inhibitor of activated STAT ,STAT3 ,Molecular Biology - Abstract
The expressions and roles of protein inhibitor of activated STAT (PIAS) proteins, a group of proteins with STAT inhibition and SUMOylation E3 ligase activity, are rarely revealed in endometrial cancer (EC). In this study, we analyzed the expressions of PIASs and their relationships with clinical features by mining online data through web servers, including UALCAN and Gene Expression Profiling Interactive Analysis (GEPIA) in EC. The expressions of PIASs in EC tissues were further validated by immunohistochemistry (IHC). The online analyses revealed only PIAS1 was consistently downregulated both at mRNA and protein level in EC, which was validated by the IHC. Subsequently, the mechanism of PIAS1 downregulation was explored with online tools like UALCAN, cBioPortal, LinkedOmics, and the Encyclopedia of RNA Interactomes (ENCORI). The results indicated that the mutation rate of PIAS1 was extremely low and not associated with PIAS1 expression. The promoter methylation level of PIAS1 was comparable between normal and EC tissues. miR-182-5p and miR-96-5p with negative association with PIAS1 in EC were predicted to target PIAS1. Dual luciferase reporter assay confirmed miR-182-5p and miR-96-5p could target PIAS1 in EC. MiR-182-5p and miR-96-5p inhibitors could upregulate PIAS1 in EC cells. Moreover, ectopic PIAS1 expression and STAT3 inhibitor treatment significantly inhibited STAT3's activity and the levels of miR-182-5p and miR-96-5p in EC cells. Collectively, our findings revealed PIAS1 was downregulated in EC, which was caused by upregulation of miR-182-5p and miR-96-5p, and PIAS1 downregulation further activated STAT3 and increased the expression of miR-182-5p and miR-96-5p, confirming miR-182-5p and miR-96-5p mediated the negative feedback regulatory loop between PIAS1 and STAT3 in EC.
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- 2021
10. DR-XGBoost: An XGBoost model for field-road segmentation based on dual feature extraction and recursive feature elimination.
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Yuzhen Xiao, Guozhao Mo, Xiya Xiong, Jiawen Pan, Bingbing Hu, Caicong Wu, and Weixin Zhai
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FEATURE extraction , *FEATURE selection , *AGRICULTURAL processing , *AGRICULTURE , *AGRICULTURAL equipment , *CONSUMPTION (Economics) - Abstract
Field-road segmentation is one of the key tasks in the processing of the trajectory of agricultural machinery. To improve the accuracy of the field-road segmentation, this study proposed an XGBoost model based on dual feature extraction and recursive feature elimination called DR-XGBoost. DR-XGBoost takes only a small amount of agricultural machine trajectory features as input. Firstly, the model adopted the dual feature extraction method we designed to rapidly expand the number of features and then adequately extract local trajectory features by the time window and feature extraction operator. Secondly, the model applies the recursive feature elimination algorithm to eliminate redundant features from the perspective of the model segmentation effect and thus reduce the computational consumption of model training. Thirdly, it trains XGBoost to complete the trajectory segmentation. To evaluate the effectiveness of DR-XGBoost, we conducted a series of experiments on a real trajectory dataset of agricultural machines. The model achieves a 98.2% Macro-F1 score on the dataset, which is 10.9% higher than the previous state-of-art. The proposal of DR-XGBoost fills the knowledge gap of trajectory feature extraction for agricultural machinery and provides a reasonable and effective feature selection scheme for the field-road segmentation problem. [ABSTRACT FROM AUTHOR]
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- 2023
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11. miR-182-5p and miR-96-5p Target
- Author
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Yuzhen, Xiao, Wei, Huang, Hongyan, Huang, Lei, Wang, Min, Wang, Tingting, Zhang, Xiaoling, Fang, and Xiaomeng, Xia
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Adult ,STAT3 Transcription Factor ,China ,Apoptosis ,Protein Inhibitors of Activated STAT ,Endometrial Neoplasms ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,Cell Movement ,Cell Line, Tumor ,Databases, Genetic ,Small Ubiquitin-Related Modifier Proteins ,Humans ,Female ,Cell Proliferation - Abstract
The expressions and roles of protein inhibitor of activated STAT (PIAS) proteins, a group of proteins with STAT inhibition and SUMOylation E3 ligase activity, are rarely revealed in endometrial cancer (EC). In this study, we analyzed the expressions of PIASs and their relationships with clinical features by mining online data through web servers, including UALCAN and Gene Expression Profiling Interactive Analysis (GEPIA) in EC. The expressions of PIASs in EC tissues were further validated by immunohistochemistry (IHC). The online analyses revealed only PIAS1 was consistently downregulated both at mRNA and protein level in EC, which was validated by the IHC. Subsequently, the mechanism of PIAS1 downregulation was explored with online tools like UALCAN, cBioPortal, LinkedOmics, and the Encyclopedia of RNA Interactomes (ENCORI). The results indicated that the mutation rate of PIAS1 was extremely low and not associated with PIAS1 expression. The promoter methylation level of PIAS1 was comparable between normal and EC tissues. miR-182-5p and miR-96-5p with negative association with PIAS1 in EC were predicted to target PIAS1. Dual luciferase reporter assay confirmed miR-182-5p and miR-96-5p could target PIAS1 in EC. MiR-182-5p and miR-96-5p inhibitors could upregulate PIAS1 in EC cells. Moreover, ectopic PIAS1 expression and STAT3 inhibitor treatment significantly inhibited STAT3's activity and the levels of miR-182-5p and miR-96-5p in EC cells. Collectively, our findings revealed PIAS1 was downregulated in EC, which was caused by upregulation of miR-182-5p and miR-96-5p, and PIAS1 downregulation further activated STAT3 and increased the expression of miR-182-5p and miR-96-5p, confirming miR-182-5p and miR-96-5p mediated the negative feedback regulatory loop between PIAS1 and STAT3 in EC.
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- 2021
12. LINC01018 and SMIM25 sponged miR-182-5p in endometriosis revealed by the ceRNA network construction
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Yuzhen Xiao, Li Jiang, Yuxin Zhou, Sixue Wang, Mengmeng Zhang, Xiaoling Fang, and Jingni Wu
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0301 basic medicine ,endometriosis ,Immunology ,Immunoglobulins ,Computational biology ,Biology ,CHL1 ,03 medical and health sciences ,Endometrium ,0302 clinical medicine ,microRNA ,Databases, Genetic ,Immunology and Allergy ,Humans ,competing endogenous RNA ,Gene Regulatory Networks ,Original Research Article ,Protein Interaction Maps ,RNA, Messenger ,KEGG ,Gene ,Pharmacology ,Messenger RNA ,long non-coding RNA ,Competing endogenous RNA ,messenger RNA ,Gene Expression Profiling ,RNA ,Long non-coding RNA ,DNA-Binding Proteins ,MicroRNAs ,030104 developmental biology ,Gene Expression Regulation ,inflammation ,030220 oncology & carcinogenesis ,Case-Control Studies ,Female ,RNA, Long Noncoding ,Transcriptome ,Cell Adhesion Molecules ,Signal Transduction ,Transcription Factors - Abstract
The current study intended to explore the interaction of the long non-coding RNA (lncRNA), microRNA (miRNA), and messenger RNA (mRNA) under the background of competitive endogenous RNA (ceRNA) network in endometriosis (EMs). The differentially expressed miRNAs (DEmiRs), differentially expressed lncRNA (DELs), and differentially expressed genes (DEGs) between EMs ectopic (EC) and eutopic (EU) endometrium based on three RNA-sequencing datasets (GSE105765, GSE121406, and GSE105764) were identified, which were used for the construction of ceRNA network. Then, DEGs in the ceRNA network were performed with Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, and protein-protein interaction (PPI) analysis. Besides, the DEmiRs in the ceRNA network were validated in GSE124010. And the target DELs and DEGs of verified DEmiRs were validated in GSE86534. The correlation of verified DEmiRs, DEGs, and DELs was explored. Moreover, gene set enrichment analysis (GSEA) was applied to investigate the function of verified DEmiRs, DEGs, and DELs. Overall, 1352 DEGs and 595 DELs from GSE105764, along with 27 overlapped DEmiRs between GSE105765 and GSE121406, were obtained. Subsequently, a ceRNA network, including 11 upregulated and 16 downregulated DEmiRs, 7 upregulated and 13 downregulated DELs, 48 upregulated and 46 downregulated DEGs, was constructed. The GO and KEGG pathway analysis showed that this ceRNA network probably was associated with inflammation-related pathways. Furthermore, hsa-miR-182-5p and its target DELs (LINC01018 and SMIM25) and DEGs (BNC2, CHL1, HMCN1, PRDM16) were successfully verified in the validation analysis. Besides, hsa-miR-182-5p was significantly negatively correlated with these target DELs and DEGs. The GSEA analysis implied that high expression of LINC01018, SMIM25, and CHL1, and low expression of hsa-miR-182-5p would activate inflammation-related pathways in endometriosis EU samples. LINC01018 and SMIM25 might sponge hsa-miR-182-5p to upregulate downstream genes such as CHL1 to promote the development of endometriosis.
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- 2020
13. UBE2T is upregulated, predicts poor prognosis, and promotes cell proliferation and invasion via inhibiting autophagy in ovarian cancer
- Author
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Hongyan Huang, Wei Huang, Yuzhen Xiao, Lei Wang, Tingting Zhang, Xiaoling Fang, and Xiaomeng Xia
- Abstract
Background: Aberrant upregulation and oncogenic roles of UBE2T have been revealed in several cancers. However, the expression, clinical significance, and functions of UBE2T has not been explored in ovarian cancer (OC).Methods: In this study, the mRNA and protein expression of UBE2T in OC were detected via analyzing the online databases and immunohistochemical staining. Moreover, relations of UBE2T expression with clincopathological features and prognosis OC patients were further analyzed. Besides, the effects of UBE2T knockdown on growth, proliferation, and invasion of OC cells were investigated by CCK-8, plate clone formation, and Transwell assays. Finally, the underlying mechanism of UBE2T associated functions in OC was analyzed.Results: The results indicated that UBE2T was significantly upregulated in OC tissues. UBE2T expression was notably correlated with clinical features such as primary T stage, TNM stage in OC patients. UBE2T, acting as an independent prognostic indicator, was inversely associated with prognosis of OC patients. UBE2T knockdown remarkably suppressed the growth, proliferation, and invasion of OC cells indicating by impaired cell viability, less cell clones and invasive cells. Mechanistically, the oncogenic roles of UBE2T was exerted by inhibiting autophagy via maintaining AKT/mTOR activity in OC.Conclusion: Collectively, our findings confirm UBE2T upregulation predicts poor prognosis and promotes malignant progression via suppressing autophagy in OC, suggesting the promising values of UBE2T both in diagnosis and treatment of OC.
- Published
- 2020
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