96 results on '"Yuping Gu"'
Search Results
2. Bridging Locomotion and Manipulation Using Reconfigurable Robotic Limbs via Reinforcement Learning
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Haoran Sun, Linhan Yang, Yuping Gu, Jia Pan, Fang Wan, and Chaoyang Song
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loco-manipulation ,reinforcement learning ,reconfigurable robot ,Technology - Abstract
Locomotion and manipulation are two essential skills in robotics but are often divided or decoupled into two separate problems. It is widely accepted that the topological duality between multi-legged locomotion and multi-fingered manipulation shares an intrinsic model. However, a lack of research remains to identify the data-driven evidence for further research. This paper explores a unified formulation of the loco-manipulation problem using reinforcement learning (RL) by reconfiguring robotic limbs with an overconstrained design into multi-legged and multi-fingered robots. Such design reconfiguration allows for adopting a co-training architecture for reinforcement learning towards a unified loco-manipulation policy. As a result, we find data-driven evidence to support the transferability between locomotion and manipulation skills using a single RL policy with a multilayer perceptron or graph neural network. We also demonstrate the Sim2Real transfer of the learned loco-manipulation skills in a robotic prototype. This work expands the knowledge frontiers on loco-manipulation transferability with learning-based evidence applied in a novel platform with overconstrained robotic limbs.
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- 2023
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3. Time and Energy Optimal Trajectory Planning of Wheeled Mobile Dual-Arm Robot Based on Tip-Over Stability Constraint
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Xianhua Li, Yuping Gu, Liang Wu, Qing Sun, and Tao Song
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wheeled mobile dual-arm robot ,tip-over stability constraint ,trajectory planning in joint space ,quintic B-spline curve ,improved NSGA-II algorithm ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Trajectory planning and avoidance of tipping are the main keys to success in the mobile dual-arm manipulation, especially when the dual-arm or moving platform is running fast. The forces and moments between wheel-terrain and body-arm have been analyzed by kinematics and force analysis of a robot to define tip-over stability constraint. Then, an improved tip-over moment stability criterion for a wheeled mobile dual-arm robot is presented and defines tip-over stability constraint based on it. To improve the motion stability of the robot, this paper presents an optimal joint trajectory planning model based on time and energy. The quintic B-spline curve and an improved NSGA-II algorithm, which are time and energy, are applied to multi-objective optimization. The simulation results show that the motion stability of a robot is improved based on the tip-over stability constraint. This trajectory planning method based on the stability constraint can be applied to other mobile robots as well.
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- 2023
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4. Mahalanobis-Taguchi System for Symbolic Interval Data Based on Kernel Mahalanobis Distance
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Zhipeng Chang, Wenhe Chen, Yuping Gu, and Haoyue Xu
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Kernel Mahalanobis distance ,symbolic interval data ,Mahalanobis-Taguchi system ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Mahalanobis-Taguchi System (MTS), as a pattern recognition method by constructing a continuous measurement scale, has a very good performance on classification and feature selection for real-valued data. However, the record of symbolic interval data has become a common practice with the recent advances in database technologies. Kernel methods not only are powerful statistical nonlinear learning methods, but also can be defined over objects as diverse as graphs, sets, strings, and text documents. In this paper, we derive kernel Mahalanobis distance (KMD) to extend MTS to symbolic interval data. To evaluate the proposed method, four experiments with synthetic symbolic interval data sets and seven experiments with real symbolic interval data sets are performed and we have compared our method with MTS based on interval Mahalanobis distance (IMD). The experimental results show our method has a better classification performance than MTS based on IMD on Accuracy, Specificity, Sensitivity, and G-means. However, MTS based on IMD has a stronger dimension reduction rate than our method.
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- 2020
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5. PPP3CB Inhibits Migration of G401 Cells via Regulating Epithelial-to-Mesenchymal Transition and Promotes G401 Cells Growth
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Lei Chen, Qingling He, Yamin Liu, Yafei Wu, Dongsheng Ni, Jianing Liu, Yanxia Hu, Yuping Gu, Yajun Xie, Qin Zhou, and Qianyin Li
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epithelial–mesenchymal transition ,PPP3CB ,metastasis ,proliferation ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
PPP3CB belongs to the phosphoprotein phosphatases (PPPs) group. Although the majority of the PPP family play important roles in the epithelial-to-mesenchymal transition (EMT) of tumor cells, little is known about the function of PPP3CB in the EMT process. Here, we found PPP3CB had high expression in kidney mesenchymal-like cells compared with kidney epithelial-like cells. Knock-down of PPP3CB downregulated epithelial marker E-cadherin and upregulated mesenchymal marker Vimentin, promoting the transition of cell states from epithelial to mesenchymal and reorganizing the actin cytoskeleton which contributed to cell migration. Conversely, overexpression of PPP3CB reversed EMT and inhibited migration of tumor cells. Besides, in vitro and in vivo experiments indicated that the loss of PPP3CB suppressed the tumor growth. However, the deletion of the phosphatase domain of PPP3CB showed no effect on the expression of E-cadherin, migration, and G401 cell proliferation. Together, we demonstrate that PPP3CB inhibits G401 cell migration through regulating EMT and promotes cell proliferation, which are both associated with the phosphatase activity of PPP3CB.
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- 2019
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6. Six2 Is a Coordinator of LiCl-Induced Cell Proliferation and Apoptosis
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Jianing Liu, Pan Ju, Yuru Zhou, Ya Zhao, Yajun Xie, Yaoshui Long, Yuping Gu, Dongsheng Ni, Zhongshi Lyv, Zhaomin Mao, Jin Hao, Yiman Li, Qianya Wan, Quist Kanyomse, Yamin Liu, Yue Xiang, Ruoli Wang, Xiangling Chen, Junman Zhang, Xihan Liu, Hui Zhao, Qin Zhou, and Ge Li
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LiCl ,metanephric mesenchyme cells ,cell proliferation ,cell apoptosis ,Six2 ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The metanephric mesenchyme (MM) cells are a subset of kidney progenitor cells and play an essential role in mesenchymal-epithelial transition (MET), the key step of nephron generation. Six2, a biological marker related to Wnt signaling pathway, promotes the proliferation, inhibits the apoptosis and maintains the un-differentiation of MM cells. Besides, LiCl is an activator of Wnt signaling pathway. However, the role of LiCl in cellular regulation of MM cells remains unclear, and the relationship between LiCl and Six2 in this process is also little known. Here, we performed EdU assay and flow cytometry assay to, respectively, detect the proliferation and apoptosis of MM cells treated with LiCl of increasing dosages. In addition, reverse transcription-PCR (RT-PCR) and Western-blot were conducted to measure the expression of Six2 and some maker genes of Wnt and bone-morphogenetic-protein (BMP) signaling pathway. Furthermore, luciferase assay was also carried out to detect the transcriptional regulation of Six2. Then we found LiCl promoted MM cell proliferation at low-concentration (10, 20, 30, and 40 mM). The expression of Six2 was dose-dependently increased in low-concentration (10, 20, 30, and 40 mM) at both mRNA and protein level. In addition, both of cell proliferation and Six2 expression in MM cells declined when dosage reached high-concentration (50 mM). However, Six2 knock-down converted the proliferation reduction at 50 mM. Furthermore, Six2 deficiency increased the apoptosis of MM cells, compared with negative control cells at relative LiCl concentration. However, the abnormal rise of apoptosis at 30 mM of LiCl concentration implies that it might be the reduction of GSK3β that increased cell apoptosis. Together, these demonstrate that LiCl can induce the proliferation and apoptosis of MM cells coordinating with Six2.
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- 2016
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7. Zeb1 Is a Potential Regulator of Six2 in the Proliferation, Apoptosis and Migration of Metanephric Mesenchyme Cells
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Yuping Gu, Ya Zhao, Yuru Zhou, Yajun Xie, Pan Ju, Yaoshui Long, Jianing Liu, Dongsheng Ni, Fen Cao, Zhongshi Lyu, Zhaomin Mao, Jin Hao, Yiman Li, Qianya Wan, Quist Kanyomse, Yamin Liu, Die Ren, Yating Ning, Xiaofeng Li, Qin Zhou, and Bing Li
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Zeb1 ,Six2 ,metanephric mesenchyme cells ,cell proliferation ,cell apoptosis ,cell migration ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Nephron progenitor cells surround around the ureteric bud tips (UB) and inductively interact with the UB to originate nephrons, the basic units of renal function. This process is determined by the internal balance between self-renewal and consumption of the nephron progenitor cells, which is depending on the complicated regulation networks. It has been reported that Zeb1 regulates the proliferation of mesenchymal cells in mouse embryos. However, the role of Zeb1 in nephrons generation is not clear, especially in metanephric mesenchyme (MM). Here, we detected cell proliferation, apoptosis and migration in MM cells by EdU assay, flow cytometry assay and wound healing assay, respectively. Meanwhile, Western and RT-PCR were used to measure the expression level of Zeb1 and Six2 in MM cells and developing kidney. Besides, the dual-luciferase assay was conducted to study the molecular relationship between Zeb1 and Six2. We found that knock-down of Zeb1 decreased cell proliferation, migration and promoted cell apoptosis in MM cells and Zeb1 overexpression leaded to the opposite data. Western-blot and RT-PCR results showed that knock-down of Zeb1 decreased the expression of Six2 in MM cells and Zeb1 overexpression contributed to the opposite results. Similarly, Zeb1 promoted Six2 promoter reporter activity in luciferase assays. However, double knock-down of Zeb1 and Six2 did not enhance the apoptosis of MM cells compared with control cells. Nevertheless, double silence of Zeb1 and Six2 repressed cell proliferation. In addition, we also found that Zeb1 and Six2 had an identical pattern in distinct developing phases of embryonic kidney. These results indicated that there may exist a complicated regulation network between Six2 and Zeb1. Together, we demonstrate Zeb1 promotes proliferation and apoptosis and inhibits the migration of MM cells, in association with Six2.
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- 2016
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8. EIYMNVPV Motif is Essential for A1CF Nucleus Localization and A1CF (-8aa) Promotes Proliferation of MDA-MB-231 Cells via Up-Regulation of IL-6
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Li Zhou, Jin Hao, Yue Yuan, Rui Peng, Honglian Wang, Dongsheng Ni, Yuping Gu, Liyuan Huang, Zhaomin Mao, Zhongshi Lyu, Yao Du, Zhicheng Liu, Yiman Li, Pan Ju, Yaoshui Long, Jianing Liu, and Qin Zhou
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Apobec-1 complementation factor (A1CF) ,EIYMNVPV motif ,Interleukin-6 (IL-6) ,nucleus localization ,proliferation ,MDA-MB-231 cells ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Apobec-1 complementation factor (A1CF) is a heterogeneous nuclear ribonuceloprotein (hnRNP) and mediates apolipoprotein-B mRNA editing. A1CF can promote the regeneration of the liver by post-transcriptionally stabilizing Interleukin-6 (IL-6) mRNA. It also contains two transcriptional variants-A1CF64 and A1CF65, distinguished by the appearance of a 24-nucleotide motif which contributes to the corresponding eight-amino acid motif of EIYMNVPV. For the first time, we demonstrated that the EIYMNVPV motif was essential for A1CF nucleus localization, A1CF deficient of the EIYMNVPV motif, A1CF (-8aa) showed cytoplasm distribution. More importantly, we found that A1CF (-8aa), but not its full-length counterpart, can promote proliferation of MDA-MB-231 cells accompanied with increased level of IL-6 mRNA. Furthermore, silencing of IL-6 attenuated A1CF (-8aa)-induced proliferation in MDA-MB-231 cells. In conclusion, notably, these findings suggest that A1CF (-8aa) promoted proliferation of MDA-MB-231 cells in vitro viewing IL-6 as a target. Thus, the EIYMNVPV motif could be developed as a potential target for basal-like breast cancer therapy.
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- 2016
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9. An Overconstrained Robotic Leg with Coaxial Quasi-direct Drives for Omni-directional Ground Mobility.
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Shihao Feng, Yuping Gu, Weijie Guo 0003, Yuqin Guo, Fang Wan, Jia Pan, and Chaoyang Song
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- 2021
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10. NASICON-based solid state Li-Fe-F conversion batteries enabled by multi-interface-compatible sericin protein buffer layer
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Meng Lei, Shengsheng Fan, Yifan Yu, Jiulin Hu, Keyi Chen, Yuping Gu, Chenglong Wu, Yang Zhang, and Chilin Li
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Renewable Energy, Sustainability and the Environment ,Energy Engineering and Power Technology ,General Materials Science - Published
- 2022
11. Discovery of Cladonema multiramosum sp. nov. (Cnidaria: Hydrozoa: Cladonematidae) using DNA barcoding and life cycle analyses
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Lu Wang, Yuping Gu, Konglin Zhou, and Jianming Chen
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Cnidaria ,Tentacle ,biology ,Cladonematidae ,Genus ,Zoology ,Taxonomy (biology) ,Aquatic Science ,Cnidocyte ,Oceanography ,biology.organism_classification ,DNA barcoding ,Hydrozoa - Abstract
In contrast to typical planktonic hydromedusae, Cladonema medusae are mostly benthic, with specialised adhesive branches to adhere to the substrate. In this study, a Cladonema species discovered in a laboratory aquarium in Fuzhou, China, was confirmed as a new species, based on morphological and molecular analyses. The species was named Cladonema multiramosum sp. nov. Its medusa is distinct from that of congeners possessing substantially more adhesive branches (8–24, rarely 5–7), and tiny branches on the upper radial canals. The validity of C. multiramosumum sp. nov. was also supported by molecular phylogenetic analyses based on the mitochondrial 16S rDNA sequence. However, C. multiramosum sp. nov. medusa also displayed considerable phenotypic plasticity with respect to its radial canals, tentacles, stinging branches per tentacle, oral tentacles, manubrium, and gonads, hindering species identification based solely on morphology. Although some morphological characteristics of hydroids (filiform tentacles and medusa buds) and nematocysts could also be used as diagnostic characters in the genus Cladonema, this information is unavailable for some Cladonema species. Thus, the taxonomy within the genus Cladonema was re-evaluated based mainly on the morphological characteristics of the medusa. Further revision of the genus Cladonema should be made when supplementary information on the life cycle and DNA barcoding are updated.
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- 2022
12. Computational design towards energy efficient optimization in overconstrained robotic limbs.
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Yuping Gu, Ziqian Wang, Shihao Feng, Haoran Sun, Haibo Lu, Jia Pan, Fang Wan, and Chaoyang Song
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Legged robots are constantly evolving, and energy efficiency is a major driving factor in their design. However, combining mechanism efficiency and trajectory planning can be challenging. This work proposes a computational optimization framework for optimizing leg design during basic walking while maximizing energy efficiency. We generalize the robotic limb design as a four-bar linkage-based design pool and optimize the leg using an evolutionary algorithm. The leg configuration and design parameters are optimized based on user-defined objective functions. Our framework was validated by comparing it to measured data on our prototype quadruped robot for forward trotting. The Bennett robotic leg was advantageous for omni-directional locomotion with enhanced energy efficiency. [ABSTRACT FROM AUTHOR]
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- 2023
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13. Research on the process of virus infecting cells using atomic force microscope measuring mechanical properties
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Yuping Gu, Shuai Yuan, Tianshu Chu, and Likai Liu
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The relationship between the infectivity of virus infecting cells and its mechanical properties has been becoming a hot issue of biology. Atomic force microscopy (AFM) provides an effective tool for studying the interaction of viruses infecting cells under physiological conditions. In order to explore the process of virus infecting cells and reveal the action principle of antiviral drugs, this paper analyzes the changing trend of mechanical properties of cells under normal conditions and after being infected by viruses, which is always soft → hard → soft for adhesion and Young's modulus; Next the influence of virus quantity on the process of infecting cells is studied, the result represents that increasing the viruses will speed up the change of mechanical properties and accelerate cell apoptosis. Then, through the comparison of the two experimental results, the process of the antiviral drug ribavirin in inhibiting the virus infecting cells is studied, which revealed that ribavirin could inhibit the virus infecting cells by modifying the surface structure of the virus. This conclusion is illustrated by measuring the hardness changing before and after the adenovirus is modified by ribavirin.
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- 2022
14. Multirate digital redesign of continuous time controllers based on closed-loop performance.
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Yuping Gu and Masayoshi Tomizuka
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- 2000
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15. A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion
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Wan Fang, Ren Na, Biqing Chen, Jianing Liu, Shanbi Zhou, Ailong Huang, Dongsheng Ni, Yuping Gu, Tingmei Chen, Yi Rao, Qin Zhou, Han Lei, Zijian Zhu, Fang Fang, and Wenxia Zhang
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0301 basic medicine ,Genetics ,Optical illusion ,Ebbinghaus illusion ,Chinese adults ,Genome-wide association study ,Single-nucleotide polymorphism ,Visual modality ,030105 genetics & heredity ,Biology ,Heritability ,03 medical and health sciences ,030104 developmental biology ,Genetics (clinical) - Abstract
The Ebbinghaus illusion (EI) is an optical illusion of relative size perception that reflects the contextual integration ability in the visual modality. The current study investigated the genetic basis of two subtypes of EI, EI overestimation, and EI underestimation in humans, using quantitative genomic analyses. A total of 2825 Chinese adults were tested on their magnitudes of EI overestimation and underestimation using the method of adjustment, a standard psychophysical protocol. Heritability estimation based on common single nucleotide polymorphisms (SNPs) revealed a moderate heritability (34.3%) of EI overestimation but a nonsignificant heritability of EI underestimation. A meta-analysis of two phases (phase 1: n = 1986, phase 2: n = 839) of genome-wide association study (GWAS) discovered 1969 and 58 SNPs reaching genome-wide significance for EI overestimation and EI underestimation, respectively. Among these SNPs, 55 linkage-disequilibrium-independent SNPs were associated with EI overestimation in phase 1 with genome-wide significance and their associations could be confirmed in phase 2 cohort. Gene-based analyses found seven genes to be associated with EI overestimation at the genome-wide level, two from meta-analysis, and five from classical two-stage analysis. Overall, this study provided consistent evidence for a substantial genetic basis of the Ebbinghaus illusion.
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- 2020
16. NASICON‐Based Solid State Li‐Fluoride Conversion Batteries Enabled by Constructing a Fluorine‐Rich Trap for Ti 4+
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Yuping Gu, Jiulin Hu, Chuanzhong Lai, and Chilin Li
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Renewable Energy, Sustainability and the Environment ,General Materials Science - Published
- 2023
17. Overconstrained coaxial design of robotic legs with omni-directional locomotion
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Yuping Gu, Shihao Feng, Yuqin Guo, Fang Wan, Jian S. Dai, Jia Pan, and Chaoyang Song
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History ,Polymers and Plastics ,Mechanics of Materials ,Mechanical Engineering ,Bioengineering ,Business and International Management ,Industrial and Manufacturing Engineering ,Computer Science Applications - Published
- 2022
18. Heritability of human visual contour integration—an integrated genomic study
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Ren Na, Shanbi Zhou, Fang Fang, Wenxia Zhang, Wan Fang, Dongsheng Ni, Ailong Huang, Yi Rao, Qin Zhou, Yuping Gu, Biqing Chen, Jianing Liu, Zijian Zhu, Han Lei, and Tingmei Chen
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Male ,Genotype ,Single-nucleotide polymorphism ,Genome-wide association study ,Computational biology ,Biology ,Poly(A)-Binding Proteins ,Polymorphism, Single Nucleotide ,Article ,Cohort Studies ,Genetics ,Humans ,SNP ,Gene ,Vision, Ocular ,Genetics (clinical) ,Genetic association ,Genomics ,Heritability ,Form Perception ,MicroRNAs ,Cohort ,Schizophrenia ,Female ,Genome-Wide Association Study - Abstract
Contour integration, a key visual function to deal with occlusion and discontinuity in natural scenes, is essential to human survival. However, individuals are not equally well equipped with this ability. In particular, contour integration deficiencies are commonly detected in patients with mental disorders, especially schizophrenia. To understand the underlying sources of these individual differences, the current study investigated the genetic basis of contour integration in humans. A total of 2619 normal participants were tested on their ability to detect continuous contours embedded in a cluttered background. Quantitative genomic analysis was performed, involving heritability estimation based on single nucleotide polymorphisms (SNPs) and association testing at SNP, gene, and pathway levels. Heritability estimation showed that common SNPs contributed 49.5% (standard error of the mean = 15.6%) of overall phenotypic variation, indicating moderate heritability of contour integration. Two-stage genome-wide association analysis (GWAS) detected four SNPs reaching genome-wide significance in the discovery test (N = 1931) but not passing the replication test (N = 688). Gene-level analysis further revealed a significant genome-wide association of a microRNA-encoding gene MIR1178 in both the discovery and replication cohorts. Another gene poly(A)-binding protein nuclear 1 like, cytoplasmic (PABPN1L) showed suggestive significance in the discovery cohort (p
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- 2019
19. PPARG Negatively Modulates Six2 in Tumor Formation of Clear Cell Renal Cell Carcinoma
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Qianyin Li, Qin Zhou, Yamin Liu, Mingwei Liu, Qingling He, Yuping Gu, Lei Chen, Dongsheng Ni, Yanxia Hu, Yafei Wu, Tao Song, Yajun Xie, and Jianing Liu
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0301 basic medicine ,Peroxisome proliferator-activated receptor gamma ,endocrine system diseases ,Cadherin ,nutritional and metabolic diseases ,Cell migration ,Cell Biology ,General Medicine ,Biology ,medicine.disease ,03 medical and health sciences ,Clear cell renal cell carcinoma ,030104 developmental biology ,0302 clinical medicine ,Cytoplasm ,Cell culture ,Apoptosis ,030220 oncology & carcinogenesis ,Genetics ,Cancer research ,medicine ,Glucose homeostasis ,Molecular Biology - Abstract
Substantial research has revealed that peroxisome proliferator-activated receptor-gamma (PPARG) plays a critical role in glucose homeostasis and lipid metabolism, and recent studies have shown different effects in the progression of different tumors. However, the role of PPARG and its target gene in clear cell renal cell carcinoma (ccRCC) are incompletely understood. Clinical data revealed abnormal glucolipid metabolism in primary ccRCC samples. In addition, transcriptional profiling indicated that PPARG expression was positively correlated, whereas Six2 expression was negatively correlated with the overall survival of ccRCC patients. Staining showed that PPARG was mainly expressed in tumor cell cytoplasm, and Six2 was localized to the nuclei. In a ccRCC cell line, PPARG activation promoted cell apoptosis, inhibited cell migration and proliferation, and reduced Six2 expression. Mechanistically, overexpressing Six2 downregulated E-cadherin expression and cell apoptosis, but PPARG activation reversed those effects. Taken together, PPARG promotes apoptosis and suppresses the migration and proliferation of ccRCC cells by inhibiting Six2. These findings reveal that the PPARG/Six2 axis acts as a central pathobiological mediator of ccRCC formation and as a potential therapeutic target for the treatment of patients with ccRCC.
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- 2019
20. An Overconstrained Robotic Leg with Coaxial Quasi-direct Drives for Omni-directional Ground Mobility
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Yuping Gu, Weijie Guo, Jia Pan, Shihao Feng, Chaoyang Song, Yuqin Guo, and Fang Wan
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Mechanism design ,business.industry ,Computer science ,Work (physics) ,Control reconfiguration ,Control engineering ,Linkage (mechanical) ,Automation ,law.invention ,law ,Robot ,business ,Omnidirectional antenna ,Actuator ,ComputingMethodologies_COMPUTERGRAPHICS - Abstract
Planar mechanisms dominate modern designs of legged robots with remote actuator placement for robust agility in ground mobility. This paper presents a novel design of robotic leg modules using the Bennett linkage, driven by two coaxially arranged quasi-direct actuators capable of omnidirectional ground locomotion. The Bennett linkage belongs to a family of overconstrained linkages with three-dimensional spatial motion and unparalleled joint axes. We present the first work regarding the design, modeling, and optimization of the Bennett leg module, enabling lateral locomotion, like the crabs, that was not capable with robotic legs designed with common planar mechanisms. We further explored the concept of overconstrained robots, which is a class of advanced robots based on the design reconfiguration of the Bennett leg modules, serving as a potential direction for future research.
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- 2021
21. Daily Online Adaptive Radiation Therapy of Postoperative Endometrial and Cervical Cancer With PTV Margin Reduction to 5 mm: Dosimetric Outcomes, Acute Toxicity, and First Clinical Experience
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Guangyu Wang, MD, Zhiqun Wang, MS, Yu Zhang, BS, Xiansong Sun, MS, Yuliang Sun, BS, Yuping Guo, MD, Zheng Zeng, MD, Bing Zhou, BS, Ke Hu, MD, Jie Qiu, PhD, Junfang Yan, MD, and Fuquan Zhang, MD
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Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Purpose: This study evaluated the first clinical implementation of daily iterative cone beam computed tomography (iCBCT)-guided online adaptive radiation therapy (oART) in the postoperative treatment of endometrial and cervical cancer. Methods and Materials: Seventeen consecutive patients treated with daily iCBCT-guided oART were enrolled in this prospective study, with a reduced uniform 3-dimensional PTV margin of 5 mm. Treatment plans were designed to deliver 45 or 50.4 Gy in 1.8 Gy daily fractions to PTV. Pre- and posttreatment ultrasound and iCBCT scans were performed to record intrafractional bladder and rectal volume changes. The accuracy of contouring, oART procedure time, dosimetric outcomes, and acute toxicity were evaluated. Results: The average time from first iCBCT acquisition to completion of treatment was 22 minutes and 26 seconds. During this period, bladder volume increased by 44 cm3 using iCBCT contouring, whereas rectal volume remained stable (62.9 cm3 pretreatment vs 61.9 cm3 posttreatment). A total of 91.6% of influencers and 88.1% of CTVs required no or minor edits. The adapted plan was selected in all (434) fractions and significantly improved the dosimetry coverage for CTV and PTV, especially the vaginal PTV coverage by nearly 7% (P < .05). The adapted bladder Dmean was 104.61 cGy, and the rectum Dmean was 123.67 cGy, significantly lower than the scheduled plan of 108.24 and 128.19 cGy, respectively. The bone marrow and femur head left and right dosimetry were also improved with adaptation. Grade 2 acute gastrointestinal and genitourinary toxicities were 24% and 0, respectively. There was a grade 3 acute toxicity of decreased white blood cell count in 1 patient. Conclusions: Daily oART was associated with favorable dosimetry improvement and low acute toxicity, supporting its safety and efficacy for postoperative treatment of endometrial and cervical cancer. These results need to be validated in a larger prospective randomized controlled cohort.
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- 2024
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22. Evaluation of PTV margins with daily iterative online adaptive radiotherapy for postoperative treatment of endometrial and cervical cancer: a prospective single-arm phase 2 study
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Guangyu Wang, Zhiqun Wang, Yuping Guo, Yu Zhang, Jie Qiu, Ke Hu, Jing Li, JunFang Yan, and Fuquan Zhang
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Cone-beam computed tomography ,Online adaptive radiotherapy ,Margins ,Acute toxicity ,Endometrial cancer ,Cervical cancer ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background To determine the optimal planning target volume (PTV) margins for adequate coverage by daily iterative cone-beam computed tomography (iCBCT)-guided online adaptive radiotherapy (oART) in postoperative treatment of endometrial and cervical cancer and the benefit of reducing PTV margins. Methods Fifteen postoperative endometrial and cervical cancer patients treated with daily iCBCT-guided oART were enrolled in this prospective phase 2 study. Pre- and posttreatment iCBCT images of 125 fractions from 5 patients were obtained as a training cohort, and clinical target volumes (CTV) were contoured separately. Uniform three-dimensional expansions were applied to the PTVpre to assess the minimum margin required to encompass the CTVpost. The dosimetric advantages of the proposed online adaptive margins were compared with conventional margin plans (7–15 mm) using an oART emulator in another cohort of 125 iCBCT scans. A CTV-to-PTV expansion was verified on a validation cohort of 253 fractions from 10 patients, and further margin reduction and acute toxicity were studied. Results The average time from pretreatment iCBCT to posttreatment iCBCT was 22 min. A uniform PTV margin of 5 mm could encompass nodal CTVpost in 100% of the fractions (175/175) and vaginal CTVpost in 98% of the fractions (172/175). The margin of 5 mm was verified in our validation cohort, and the nodal PTV margin could be further reduced to 4 mm if ≥ 95% CTV coverage was predicted to be achieved. The adapted plan with a 5 mm margin significantly improved pelvic organ-at-risk dosimetry compared with the conventional margin plan. Grade 3 toxicities were observed in only one patient with leukopenia, and no patients experienced acute urinary toxicity. Conclusion In the postoperative treatment of endometrial and cervical cancer, oART could reduce PTV margins to 5 mm, which significantly decrease the dose to critical organs at risk and potentially lead to a lower incidence of acute toxicity.
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- 2024
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23. An Overview of Naphthylimide as Specific Scaffold for New Drug Discovery
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Wei Ruan, Zhouling Xie, Ying Wang, Lulu Xia, Yuping Guo, and Dan Qiao
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naphtylimide ,antibacterial ,antifungal ,anticancer ,antiviral ,biological activity ,Organic chemistry ,QD241-441 - Abstract
Naphthylimides play a pivotal role as aromatic heterocyclic compounds, serving as the foundational structures for numerous pharmacologically significant drugs. These drugs encompass antibacterial, antifungal, anticancer, antimalarial, antiviral, anti-inflammatory, antithrombotic, and antiprotozoal agents. The planar and heteroaromatic characteristics of naphthylimides grant them a strong ability to intercalate into DNA. This intercalation property renders naphthylimide derivatives highly valuable for various biological activities. The advantageous pharmacological activity and ease of synthesis associated with naphthylimides and their derivatives provide significant benefits in the design and development of new compounds within this class. Currently, only a few such molecules are undergoing preclinical and clinical evaluations. In this paper, we have compiled the literature on naphthylimides reported by researchers from 2006 to 2024. Our focus lies on exploring the pharmacological activities of their analogues from a drug development and discovery perspective, while examining their structure–activity relationship and mechanisms of action.
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- 2024
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24. [PPP3CA silence regulates MET process, cell apoptosis, proliferation and migration in metanephric mesenchyme cells]
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Yuping, Gu, Lei, Chen, and Qianyin, Li
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Mesoderm ,Mice ,Epithelial-Mesenchymal Transition ,Cell Movement ,Cell Line, Tumor ,Animals ,Apoptosis ,Mesenchymal Stem Cells ,Gene Silencing ,Cell Line ,Cell Proliferation - Abstract
Kidney is one of the most important organs of the body and the mammalian kidney development is essential for kidney unit formation. The key process of kidney development is metanephric development, where mesenchymal-epithelial transition (MET) plays a crucial role. Here we investigated the biological function of PPP3CA in metanephric mesenchyme (MM) cells. qRT-PCR and Western blotting were used to detect PPP3CA and MET makers expression in mK3, mK4 cells respectively at mRNA and protein level. Subsequently, PPP3CA was stably knocked down via lentivirus infection in mK4 cells. Flow cytometry, EdU/CCK-8 assay, wound healing assay were conducted to clarify the regulation of PPP3CA on cell apoptosis, proliferation and migration respectively. PPP3CA was expressed higher in epithelial-like mK4 cells than mesenchyme-like mK3 cells. Thus, PPP3CA was silenced in mK4 cells and PPP3CA deficiency promoted E-cadherin expression, cell apoptosis. Moreover, PPP3CA knock down attenuated cell proliferation and cell migration in mK4 cell. The underlying mechanism was associated with the dephosphorylation of PPP3CA on ERK1/2. Taken together, our results indicated that PPP3CA mediated MET process and cell behaviors of MM cells, providing new foundation for analyzing potential regulator in kidney development process.肾脏是人体重要器官,肾脏发育对肾脏的形成和功能至关重要,其中后肾间充质细胞 (Metanephric mesenchyme,MM) 间质-上皮转化 (Mesenchymal-epithelial transition,MET) 是肾单位形成的关键环节。qRT-PCR和Western blotting 实验检测蛋白质磷酸酶3 催化亚基α (Protein phosphatase 3 catalytic subunit alpha,PPP3CA) 在不同状态MM 细胞株mK3、mK4 中的表达谱及对MET 标志蛋白调控作用;采用慢病毒包装方式构建稳定敲低PPP3CA 的mK4 细胞株;采用CCK-8、EdU 实验、细胞划痕实验、流式细胞技术分别检测PPP3CA 对上皮样后肾间充质细胞株mK4 细胞生长、迁移、凋亡的调控作用。PPP3CA 在mK4 细胞中表达量较间质样后肾间充质细胞mK3 更高,敲低PPP3CA 后,检测MET 标志物及细胞生物学行为,结果显示敲低PPP3CA 显著上调上皮细胞标志物E-cadherin 表达,促进MET 过程,且促进细胞凋亡,抑制细胞增殖和迁移。此外,敲低PPP3CA 促进ERK1/2磷酸化,提示PPP3CA 生物学功能的调控机制可能与其去磷酸化ERK1/2 蛋白相关。以上结果提示PPP3CA 在MM 细胞MET 转化和生物学行为调节中发挥重要功能,为发现和解析肾发育过程中潜在的关键调节因子提供了新的理论基础。.
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- 2020
25. A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion
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Zijian, Zhu, Biqing, Chen, Ren, Na, Wan, Fang, Wenxia, Zhang, Qin, Zhou, Shanbi, Zhou, Han, Lei, Ailong, Huang, Tingmei, Chen, Dongsheng, Ni, Yuping, Gu, Jianing, Liu, Yi, Rao, and Fang, Fang
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Adult ,Male ,Adolescent ,Genotype ,Optical Illusions ,Individuality ,Polymorphism, Single Nucleotide ,Linkage Disequilibrium ,Young Adult ,Asian People ,Ethnicity ,Humans ,Female ,Size Perception ,Genome-Wide Association Study ,Visual Cortex - Abstract
The Ebbinghaus illusion (EI) is an optical illusion of relative size perception that reflects the contextual integration ability in the visual modality. The current study investigated the genetic basis of two subtypes of EI, EI overestimation, and EI underestimation in humans, using quantitative genomic analyses. A total of 2825 Chinese adults were tested on their magnitudes of EI overestimation and underestimation using the method of adjustment, a standard psychophysical protocol. Heritability estimation based on common single nucleotide polymorphisms (SNPs) revealed a moderate heritability (34.3%) of EI overestimation but a nonsignificant heritability of EI underestimation. A meta-analysis of two phases (phase 1: n = 1986, phase 2: n = 839) of genome-wide association study (GWAS) discovered 1969 and 58 SNPs reaching genome-wide significance for EI overestimation and EI underestimation, respectively. Among these SNPs, 55 linkage-disequilibrium-independent SNPs were associated with EI overestimation in phase 1 with genome-wide significance and their associations could be confirmed in phase 2 cohort. Gene-based analyses found seven genes to be associated with EI overestimation at the genome-wide level, two from meta-analysis, and five from classical two-stage analysis. Overall, this study provided consistent evidence for a substantial genetic basis of the Ebbinghaus illusion.
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- 2020
26. ID1 As a Prognostic Biomarker and Promising Drug Target Plays a Pivotal Role in Deterioration of Clear Cell Renal Cell Carcinoma
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Yuping Gu, Qianyin Li, Xiangmin Qiu, and Yilu Ni
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Inhibitor of Differentiation Protein 1 ,Microarray ,Article Subject ,Down-Regulation ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Metastasis ,Immune system ,Drug Delivery Systems ,medicine ,Biomarkers, Tumor ,Humans ,Molecular Targeted Therapy ,Gene ,Carcinoma, Renal Cell ,Proportional Hazards Models ,General Immunology and Microbiology ,Gene Expression Profiling ,Valproic Acid ,General Medicine ,DNA, Neoplasm ,medicine.disease ,Prognosis ,Kidney Neoplasms ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,Clear cell renal cell carcinoma ,Gene Ontology ,Multivariate Analysis ,Cancer research ,Biomarker (medicine) ,Medicine ,Toxicogenomics ,CD8 ,Research Article - Abstract
Clear cell renal cell carcinoma (ccRCC) is one of the most common cancers in the world. Our aim is to identify prognostic biomarkers that contribute to the progression of early stage ccRCC and clarify the mechanism. Here, the mRNA microarray expression profile of ccRCC samples was obtained from Gene Expression Omnibus (GEO) (GSE68417). 62 differentially expressed genes (DEGs) were gained by R Studio, including 31 upregulated genes and 31 downregulated genes. Pathway enrichment analysis was performed in DAVID database. Then, the protein-protein interaction network was obtained through STRING database and visualized by Cytoscape. Subsequently, among the network, only inhibitor of DNA Binding 1 (ID1) was significant between low-grade and high-grade ccRCC patients in TCGA data set. After analysis of the corresponding clinical information in R Studio, it is shown that low ID1 expression correlated with poor survival, high probability of tumor metastasis, and relatively high serum calcium. Later, functional enrichment of ID1 in GeneMANIA uncovered that regulating DNA binding is a main characteristic of ID1 in ccRCC, which was validated by Kaplan-Meier curve of ID1 associated genes using KM plotter database and R Studio. Immune infiltration analysis performed by Tumor Immune Estimation Resource (TIMER) revealed that CD8+ T cells and macrophages were prognostic factors. Furthermore, Valproic acid was analyzed to be the most convinced target drug of ID1 identified by Comparative Toxicogenomics Database (CTD). Taken together, ID1, a biomarker of clinical outcome in early stage ccRCC patients, has the potential function of preventing deterioration in ccRCC progression and metastasis.
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- 2020
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27. Gulo regulates the proliferation, apoptosis and mesenchymal-to-epithelial transformation of metanephric mesenchyme cells via inhibiting Six2
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Lei Chen, Qianyin Li, Yuping Gu, Qin Zhou, Jianing Liu, Yajun Xie, Dongsheng Ni, Yamin Liu, Yafei Wu, Yanxia Hu, and Qingling He
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0301 basic medicine ,Epithelial-Mesenchymal Transition ,Mesenchyme ,Biophysics ,Kidney development ,Apoptosis ,Kidney ,Biochemistry ,Mice ,03 medical and health sciences ,Cell Movement ,medicine ,Animals ,Humans ,Molecular Biology ,Cells, Cultured ,Cell Proliferation ,Homeodomain Proteins ,chemistry.chemical_classification ,Oxidase test ,030102 biochemistry & molecular biology ,Mesenchymal stem cell ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Mesenchymal Stem Cells ,Cell Biology ,Cell biology ,HEK293 Cells ,030104 developmental biology ,medicine.anatomical_structure ,Enzyme ,chemistry ,Homeobox ,Female ,L-Gulonolactone Oxidase ,Transcription Factors - Abstract
During kidney development, the balance between self-renewal and differentiation of metanephric mesenchyme (MM) cells, mainly regulated by Sine oculis-related homeobox 2 (Six2), is critical for forming mature kidney. L-gulono-γ-lactone oxidase (Gulo), a crucial enzyme for vitamin C synthesis, reveals a different expression at various stages during kidney development, but its function in the early renal development remains unknown. In this work, we aim to study the role of Gulo in MM cells at two differentiation stages. We found that Gulo expression in undifferentiated MM (mK3) cells was lower than in differentiated MM (mK4) cells. Over-expression of Gulo can promote mesenchymal-to-epithelial transformation (MET) and apoptosis and inhibit the proliferation in mK3 cells. Knock-down of Gulo in mK4 cells made its epithelial character cells unstabilized, facilitated the proliferation and restrained the apoptosis. Furthermore, we found that Six2 was negatively regulated by Gulo, and over-expression or knock-down of Six2 was able to rescue partially the MET, proliferation and apoptosis of MM cells caused by Gulo. In conclusion, these findings reveal that Gulo promotes the MET and apoptosis, and inhibits proliferation in MM cells by down-regulating Six2.
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- 2018
28. Nature vs. nurture in human sociality: multi-level genomic analyses of social conformity
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Ailong Huang, Yi Rao, Biqing Chen, Wan Fang, Xiaohu Ding, Dongsheng Ni, Tingmei Chen, Mingguang He, Shanbi Zhou, Yingying Wang, Yuping Gu, Jianing Liu, Qin Zhou, Han Lei, Xiaobo Guo, and Zijian Zhu
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Adult ,Genetic Markers ,Male ,0301 basic medicine ,Adolescent ,media_common.quotation_subject ,Inheritance Patterns ,Twins ,Genome-wide association study ,Genomics ,Locus (genetics) ,Single-nucleotide polymorphism ,Biology ,Quantitative trait locus ,Polymorphism, Single Nucleotide ,Conformity ,Memory conformity ,Young Adult ,03 medical and health sciences ,Quantitative Trait, Heritable ,Meta-Analysis as Topic ,Memory ,Social Conformity ,Image Processing, Computer-Assisted ,Genetics ,Humans ,Child ,Social Behavior ,Genetics (clinical) ,media_common ,Brain Mapping ,Gene Expression Profiling ,Brain ,Magnetic Resonance Imaging ,Gene expression profiling ,030104 developmental biology ,Female ,Genome-Wide Association Study - Abstract
Social conformity is fundamental to human societies and has been studied for more than six decades, but our understanding of its mechanisms remains limited. Individual differences in conformity have been attributed to social and cultural environmental influences, but not to genes. Here we demonstrate a genetic contribution to conformity after analyzing 1,140 twins and single-nucleotide polymorphism (SNP)-based studies of 2,130 young adults. A two-step genome-wide association study (GWAS) revealed replicable associations in 9 genomic loci, and a meta-analysis of three GWAS with a sample size of ~2,600 further confirmed one locus, corresponding to the NAV3 (Neuron Navigator 3) gene which encodes a protein important for axon outgrowth and guidance. Further multi-level (haplotype, gene, pathway) GWAS strongly associated genes including NAV3, PTPRD (protein tyrosine phosphatase receptor type D), ARL10 (ADP ribosylation factor-like GTPase 10), and CTNND2 (catenin delta 2), with conformity. Magnetic resonance imaging of 64 subjects shows correlation of activation or structural features of brain regions with the SNPs of these genes, supporting their functional significance. Our results suggest potential moderate genetic influence on conformity, implicate several specific genetic elements in conformity and will facilitate further research on cellular and molecular mechanisms underlying human conformity.
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- 2018
29. BMP7 plays a critical role in TMEM100-inhibited cell proliferation and apoptosis in mouse metanephric mesenchymal cells in vitro
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Pan Ju, Die Ren, Yuping Gu, Yaoshui Long, Yajun Xie, Qin Zhou, Jianing Liu, and Dongsheng Ni
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0301 basic medicine ,animal structures ,Bone Morphogenetic Protein 7 ,Apoptosis ,Bone Morphogenetic Protein Receptors, Type II ,Kidney ,Cell Line ,Mice ,03 medical and health sciences ,Annexin ,Animals ,Cell Proliferation ,Cell growth ,Chemistry ,Mesenchymal stem cell ,Membrane Proteins ,Mesenchymal Stem Cells ,Cell Biology ,General Medicine ,Embryonic stem cell ,Cell biology ,030104 developmental biology ,Cell culture ,Gene Knockdown Techniques ,Ureteric bud ,embryonic structures ,Stem cell ,Developmental Biology - Abstract
Kidney mainly arises from the induction of metanephric mesenchymal cells (MM cells) and the ureteric bud (UB). Transmembrane protein-100 (Tmem100) consists of two transmembrane regions with strong temporal and spatial expression characteristics during renal development. However, the function of Tmem100 in mouse embryonic kidney-derived cells remained unclear. We provided qPCR to verify the relationship between Tmem100 and the BMP signal pathway. To clarify the role of Tmem100 in cell proliferation and apoptosis, we carry out EdU incorporation, annexin V- fluorescein isothiocyanate (FITC) apoptosis assay. Here, we find that the knockdown of Tmem100 increases the proliferation and apoptosis of mouse embryonic kidney-derived cells, and this promotion can be inhibited by knockdown of BMP7 at the same time; these results suggest that BMP7 plays a crucial role in Tmem100-regulated cell proliferation and apoptosis. qRT-PCR results further demonstrate that the deficiency of Tmem100 leads to BMP7 upregulation and overexpression could get opposite results. In BMP7-depleted MK3 cells, Tmem100 is highly upregulated and BMPR-II is downregulated. And in BMP7-overexpressed MK3 cells, the expression of Tmem100 is decreased. In BMPR-II-depleted MK3 cells, Tmem100 is downregulated and BMP7 expression remains still. These findings indicate that both BMP7 and BMPR-II can regulate Tmem100 and vice versa, and BMPR-II expression is regulated by BMP7. However, BMP7 has no association with BMPR-II in MK3 cells. Our data demonstrated the significant role of BMP7 in Tmem100-regulated cell proliferation and apoptosis and revealed the complicated regulation network among Tmem100, BMP7, and BMPR-II in mouse embryonic kidney-derived cells.
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- 2017
30. Solid polymer electrolytes incorporating cubic Li7La3Zr2O12 for all-solid-state lithium rechargeable batteries
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Yuping Gu, Fei Chen, Wenping Zha, Dunjie Yang, Qiang Shen, Donald R. Sadoway, Yanhua Zhang, Junyang Li, Bodi Zhu, and Lianmeng Zhang
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Tape casting ,Battery (electricity) ,Materials science ,General Chemical Engineering ,Inorganic chemistry ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Crystallinity ,Differential scanning calorimetry ,chemistry ,Chemical engineering ,visual_art ,Electrochemistry ,visual_art.visual_art_medium ,Fast ion conductor ,Ionic conductivity ,Lithium ,Ceramic ,0210 nano-technology - Abstract
The advantages of all-solid-state batteries in terms of high energy density and improved safety have accelerated the research into durable and reliable solid electrolytes and into scale up of their processing technology. High lithium-ion-conducting Li7La3Zr2O12 (LLZO) ceramic-based solid electrolytes have been intensively studied recently, but their widespread commercial deployment has been constrained due to their fragility and brittleness. In the present study, LLZO ceramic powders have been successfully incorporated into the polyethylene oxide (PEO) polymer by tape casting. The ionic conductivity of the PEO/LLZO composite electrolyte membranes is significantly enhanced at the optimal LLZO concentration of 7.5 wt.% at which the materials exhibits maximum ionic conductivity of 5.5 × 10−4 S·cm−1 at 30 °C. The ionic conductivity enhancement mechanism of the composite electrolyte is revealed by differential scanning calorimetry (DSC), which shows that the LLZO filler represses crystallinity in PEO. Furthermore, as evidence of the advantageous electrochemical properties of the composite electrolyte an all-solid-state battery of LiFePO4/Li fabricated herein delivered a maximum discharge capacity of 150.1 mAh·g−1 at 0.1C, good cycling performance, and excellent rate capability under 60 °C.
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- 2017
31. Six2 is involved in GATA1-mediated cell apoptosis in mouse embryonic kidney-derived cell lines
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Xin Yan, Dongsheng Ni, Yajun Xie, Hua Xia, Pan Ju, Qin Zhou, Yamin Liu, Yuping Gu, and Jianing Liu
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0301 basic medicine ,Apoptosis ,Biology ,Kidney ,Cell Line ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Animals ,GATA1 Transcription Factor ,Progenitor cell ,Promoter Regions, Genetic ,Transcription factor ,Homeodomain Proteins ,Gene knockdown ,Base Sequence ,Cell growth ,HEK 293 cells ,Promoter ,Cell Biology ,General Medicine ,Molecular biology ,030104 developmental biology ,Gene Expression Regulation ,Cell culture ,Gene Knockdown Techniques ,030220 oncology & carcinogenesis ,Stem cell ,Transcription Factors ,Developmental Biology - Abstract
Six2 (Sine oculis homeobox 2), a homeodomain transcription factor, plays a crucial role in the regulation of mammalian nephrogenesis. It is also implicated in numerous biological functions, such as cell proliferation, apoptosis, and migration. However, the underlying regulatory mechanisms of Six2 remain largely unknown. In this study, we predicted that CRX, GATA1, HOXD8, and POU2F2 might target, binding to the promoter region of Six2 (~2000 bp) by bioinformatics analysis. Among the four genes, the predicted binding sequence of GATA1 is most highly conserved across species. Luciferase assays demonstrated that knockdown of GATA1 decreased the activity of Six2 promoter and qPCR result of Six2 expression was in consistent with this in 293T cells. Mutation of GATA1 binding sites of mSix2 promoter led to obvious decrease of the mSix2 promoter activity. Furthermore, knockdown of GATA1 decreased Six2 expression in mk3 cells and increased cell apoptosis of mk3 and mk4 compared with corresponding control cells, but this up-regulation can be rescued by Six2 overexpression. Our findings indicated that GATA1 may be a potential regulator of Six2-maintained population of nephron progenitor cells.
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- 2017
32. PPP3CB Inhibits Migration of G401 Cells via Regulating Epithelial-to-Mesenchymal Transition and Promotes G401 Cells Growth
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Jianing Liu, Qin Zhou, Yafei Wu, Yanxia Hu, Yuping Gu, Yamin Liu, Qianyin Li, Yajun Xie, Qingling He, Dongsheng Ni, and Lei Chen
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Epithelial-Mesenchymal Transition ,proliferation ,Cell ,Vimentin ,epithelial–mesenchymal transition ,Catalysis ,Article ,lcsh:Chemistry ,Inorganic Chemistry ,Mice ,Antigens, CD ,Cell Movement ,Cell Line, Tumor ,medicine ,Animals ,Humans ,metastasis ,Epithelial–mesenchymal transition ,Physical and Theoretical Chemistry ,Cytoskeleton ,lcsh:QH301-705.5 ,Molecular Biology ,Spectroscopy ,Cell Proliferation ,biology ,Chemistry ,Cell growth ,Calcineurin ,Organic Chemistry ,Mesenchymal stem cell ,Cell migration ,General Medicine ,Actin cytoskeleton ,Cadherins ,PPP3CB ,Kidney Neoplasms ,Computer Science Applications ,Cell biology ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,medicine.anatomical_structure ,lcsh:Biology (General) ,lcsh:QD1-999 ,biology.protein ,Neoplasm Transplantation - Abstract
PPP3CB belongs to the phosphoprotein phosphatases (PPPs) group. Although the majority of the PPP family play important roles in the epithelial-to-mesenchymal transition (EMT) of tumor cells, little is known about the function of PPP3CB in the EMT process. Here, we found PPP3CB had high expression in kidney mesenchymal-like cells compared with kidney epithelial-like cells. Knock-down of PPP3CB downregulated epithelial marker E-cadherin and upregulated mesenchymal marker Vimentin, promoting the transition of cell states from epithelial to mesenchymal and reorganizing the actin cytoskeleton which contributed to cell migration. Conversely, overexpression of PPP3CB reversed EMT and inhibited migration of tumor cells. Besides, in vitro and in vivo experiments indicated that the loss of PPP3CB suppressed the tumor growth. However, the deletion of the phosphatase domain of PPP3CB showed no effect on the expression of E-cadherin, migration, and G401 cell proliferation. Together, we demonstrate that PPP3CB inhibits G401 cell migration through regulating EMT and promotes cell proliferation, which are both associated with the phosphatase activity of PPP3CB.
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- 2018
33. A1CF-Axin2 signal axis regulates apoptosis and migration in Wilms tumor-derived cells through Wnt/β-catenin pathway
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Yamin Liu, Dongsheng Ni, Qin Zhou, Yanxia Hu, Jianing Liu, Yuping Gu, and Yajun Xie
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0301 basic medicine ,Apoptosis ,Wilms Tumor ,03 medical and health sciences ,0302 clinical medicine ,Axin Protein ,Cell Movement ,Cell Line, Tumor ,AXIN2 ,Humans ,Wnt Signaling Pathway ,beta Catenin ,Gene knockdown ,Cell growth ,Chemistry ,Wnt signaling pathway ,RNA-Binding Proteins ,Cell migration ,Cell Biology ,General Medicine ,Cell biology ,030104 developmental biology ,HEK293 Cells ,030220 oncology & carcinogenesis ,Catenin ,Gene Knockdown Techniques ,Stem cell ,Developmental Biology - Abstract
A1CF, a complementary factor of APOBEC-1, is involved in many cellular processes for its mRNA editing role, such as cell proliferation, apoptosis, and migration. Here, we explored the regulatory function of A1CF in Wilms tumor-derived cells. Quantitative real-time PCR was performed to detect the mRNA level of A1CF, Axin2, β-Catenin, CCND1 or NKD1 in A1CF-depleted or A1CF-overexpression G401 cells. Western bolt was used to analyze the expression of A1CF, Axin2, and β-catenin protein. The cell apoptosis and migration ability were determined using flow cytometry assay or wound healing, respectively. Our study demonstrated that overexpression of A1CF, Axin2 was upregulated and knockdown of A1CF decreased Axin2 expression at mRNA and protein levels in G401 cells. Besides, knockdown of A1CF further upregulated β-catenin, the classical regulator of Wnt signal pathway, and increased CCND1 and NKD1, the target genes of Wnt/β-catenin. Furthermore, overexpression of Axin2 partly rescued the expression of β-catenin in A1CF-deficiency stable G401 cells. In Wnt agonist BML-284 treated G401 cells, A1CF was increased like other classical regulator of Wnt signal pathway, such as Axin2 and β-catenin. Meanwhile, knockdown of Axin2 rescued β-catenin expression which was decreased in A1CF overexpression condition with BML-284. Further, overexpression of A1CF reduced cell apoptosis but promoted cell migration, and overexpression of Axin2 got similar results. In A1CF-decreased stable G401 cells, overexpression of Axin2 partly rescued the cell apoptosis and migration. We find that A1CF is a positive regulator of Axin2, a Wnt/β-catenin pathway inhibitor, and A1CF-Axin2 signal axis regulates Wilms tumor-derived cells’ apoptosis and migration through Axin2.
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- 2018
34. Inflammatory genes are novel prognostic biomarkers for colorectal cancer
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Hao Jiang, Dong Fan, Zhiguo Sun, Li Dong, Henghun Zhang, Yuping Gu, and Fangyan Gong
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Male ,0301 basic medicine ,Colorectal cancer ,Gene regulatory network ,PTPN6 ,inflammatory genes ,colorectal cancer ,Kaplan-Meier Estimate ,Biology ,Disease-Free Survival ,regulatory network ,survival analysis ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Databases, Genetic ,Biomarkers, Tumor ,Genetics ,medicine ,Humans ,Gene Regulatory Networks ,RNA, Messenger ,PLCG1 ,Gene ,Aged ,Proportional Hazards Models ,Inflammation ,Gene Expression Profiling ,Reproducibility of Results ,biomarkers ,Cancer ,Articles ,General Medicine ,Middle Aged ,Prognosis ,SHC1 ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Gene expression profiling ,030104 developmental biology ,030220 oncology & carcinogenesis ,Multivariate Analysis ,Cancer research ,Female ,Colorectal Neoplasms - Abstract
Inflammatory genes serve a crucial role in the pathogenesis of inflammation-associated tumors. However, as recent studies have mainly focused on the effects of single inflammatory genes on colorectal cancer (CRC), but not on the global interactions between genes, the underlying mechanisms between inflammatory genes and CRC remain unclear. In the current study, two inflammation-associated networks were constructed based on inflammatory genes, differentially expressed genes (DEGs) in CRC vs. normal samples, and protein-protein interactions (PPIs). These networks included an inflammation-related neighbor network (IRNN) and an inflammation-related DEG network (IRDN). Notably, the results indicated that the inflammatory genes served as important CRC-associated genes in the IRNN. Certain inflammatory genes were more likely to be network hubs and exhibited higher betweenness centralities, indicating that these inflammatory hub genes had central roles in the communication between genes in the IRNN. By contrast, in the IRDN, functional enrichment analysis revealed that genes were enriched in numerous cancer-associated functions and pathways. Subsequently, 14 genes in a module were identified in the IRDN as the potential biomarkers associated with disease-free survival (DFS) in CRC patients in the GSE24550 dataset, the prognosis of which was further validated using three independent datasets (GSE24549, GSE34551 and GSE103479). All 14 genes (including BCAR1, CRK, FYN, GRB2, LCP2, PIK3R1, PLCG1, PTK2, PTPN11, PTPN6, SHC1, SOS1, SRC and SYK) in this module were inflammatory genes, emphasizing the critical role of inflammation in CRC. In conclusion, these findings based on integrated inflammation-associated networks provided a novel insight that may help elucidate the inflammation-mediated mechanisms involved in CRC.
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- 2018
35. CircDNAJC11 interacts with TAF15 to promote breast cancer progression via enhancing MAPK6 expression and activating the MAPK signaling pathway
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Bin Wang, Hang Chen, Yumei Deng, Hong Chen, Lei Xing, Yuping Guo, Min Wang, and Junxia Chen
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Breast cancer ,CircDNAJC11 ,TAF15 ,MAPK6 ,MAPK signaling pathway ,Medicine - Abstract
Abstract Background Breast cancer (BC) is a common malignant tumor in women worldwide. Circular RNA (circRNA) has been proven to play a critical role in BC progression. However, the exact biological functions and underlying mechanisms of circRNAs in BC remain largely unknown. Methods Here, we first screened for differentially expressed circRNAs in 4 pairs of BC tissues and adjacent non-tumor tissues using a circRNA microarray. Functionally, gain- and loss-of-function experiments in vitro and in vivo showed that circDNAJC11 promoted BC cell proliferation, migration, invasion, and tumor growth. Mechanistically, RNA pull-down, mass spectrum, RNA immunoprecipitation, fluorescence in situ hybridization assays, and rescue experiments were executed. Results We found that circDNAJC11 was significantly upregulated in triple-negative breast cancer tissues and cells. Clinical data revealed that the high expression of circDNAJC11 was closely correlated with a poor prognosis of BC patients and could be an independent risk factor for BC prognosis. Functionally, gain- and loss-of-function experiments in vitro and in vivo showed that circDNAJC11 promoted BC cell proliferation, migration, invasion, and tumor growth. Mechanistically, RNA pull-down, mass spectrum, RNA immunoprecipitation, fluorescence in situ hybridization assays, and rescue experiments were executed. We demonstrated that circDNAJC11 combined with TAF15 to promote BC progression via stabilizing MAPK6 mRNA and activating the MAPK signaling pathway. Conclusions The circDNAJC11/TAF15/MAPK6 axis played a crucial role in the progression and development of BC, suggesting that circDNAJC11 might be a novel biomarker and therapeutical target for BC.
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- 2023
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36. MicroRNA-590 is an EMT-suppressive microRNA involved in the TGFβ signaling pathway
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Rui Peng, Li Zhou, Tianming Liu, Dongsheng Ni, Qin Zhou, Yaguang Weng, Yuping Gu, Fang Nie, Zhongshi Lv, Xianggui Yang, Xiaoyan Wang, and Yue Yuan
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Male ,kidney ,Cancer Research ,HK2 ,Epithelial-Mesenchymal Transition ,Protein Serine-Threonine Kinases ,Biochemistry ,Cell Line ,miR-590 ,Transforming Growth Factor beta ,RNA interference ,microRNA ,Genetics ,Animals ,Humans ,Epithelial–mesenchymal transition ,RNA, Small Interfering ,Molecular Biology ,Transforming growth factor-β receptor 2 ,biology ,HEK 293 cells ,Receptor, Transforming Growth Factor-beta Type II ,Kidney metabolism ,Articles ,Transforming growth factor beta ,Up-Regulation ,Cell biology ,Mice, Inbred C57BL ,MicroRNAs ,HEK293 Cells ,unilateral ureteral obstruction ,Oncology ,embryonic structures ,biology.protein ,Molecular Medicine ,RNA Interference ,epithelial-to-mesenchymal transition ,Signal transduction ,Receptors, Transforming Growth Factor beta ,Signal Transduction ,Transforming growth factor - Abstract
Over the last few decades, the epithelial-to-mesenchymal transition (EMT) has been identified as being involved in a number of aspects of physiological processes and various pathological events, including embryonic development and renal fibrosis. Transforming growth factor‑β receptor 2 (TGFβR2) is a widely studied gene, which fulfils a vital role in the TGFβ signaling pathway and exerts a crucial function in the progression of EMT. Previous studies demonstrated that the dysregulation of microRNAs (miRNAs) is considered to be associated with the EMT process. However, the precise functional involvement of miRNAs in EMT remains to be fully elucidated. In the present study, the level of miR‑590 was decreased in an EMT model in vitro and in vivo. Furthermore, the overexpression of miR‑590 inhibited EMT by upregulating the epithelial marker, E‑cadherin, and downregulating the mesenchymal markers, laminin, α‑smooth muscle actin (α‑SMA) and collagen, in the human kidney 2 (HK2) cell line. Furthermore, TGFβR2 was negatively regulated by miR‑590. In addition, performing a knockdown of TGFβR2 with small‑interfering RNA had an effect similar to miR‑590 on EMT in the HK2 cell line, whereas the transfection of pCMV‑tag2B‑TGFβR2 reversed the effect of miR‑590 on EMT in HK2 cells. Taken together, the present study demonstrated that miR-590 is a novel EMT-suppressive microRNA, which targets TGFβR2.
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- 2015
37. Genomic Analyses of Visual Cognition: Perceptual Rivalry and Top-Down Control
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Yuping Gu, Ren Na, Jianing Liu, Yi Rao, Han Lei, Dongsheng Ni, Shanbi Zhou, Zijian Zhu, Fang Fang, Wenxia Zhang, Ailong Huang, Qin Zhou, Wan Fang, Tingmei Chen, and Biqing Chen
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0301 basic medicine ,Binocular rivalry ,Adult ,Male ,Adolescent ,media_common.quotation_subject ,Stimulus (physiology) ,Polymorphism, Single Nucleotide ,Cohort Studies ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Cognition ,Neuroimaging ,Perception ,Humans ,Rivalry ,Necker cube ,Research Articles ,media_common ,General Neuroscience ,Genomics ,030104 developmental biology ,Endophenotype ,Visual Perception ,Female ,Psychology ,030217 neurology & neurosurgery ,Photic Stimulation ,Cognitive psychology ,Genome-Wide Association Study - Abstract
Visual cognition in humans has traditionally been studied with cognitive behavioral methods and brain imaging, but much less with genetic methods. Perceptual rivalry, an important phenomenon in visual cognition, is the spontaneous perceptual alternation that occurs between two distinct interpretations of a physically constant visual stimulus (e.g., binocular rivalry stimuli) or a perceptually ambiguous stimulus (e.g., the Necker cube). The switching rate varies dramatically across individuals and can be voluntarily modulated by observers. Here, we adopted a genomic approach to systematically investigate the genetics underlying binocular rivalry, Necker cube rivalry and voluntary modulation of Necker cube rivalry in young Chinese adults (Homo sapiens, 81% female, 20 ± 1 years old) at multiple levels, including common single nucleotide polymorphism (SNP)-based heritability estimation, SNP-based genome-wide association study (GWAS), gene-based analysis, and pathway analysis. We performed a pilot GWAS in 2441 individuals and replicated it in an independent cohort of 943 individuals. Common SNP-based heritability was estimated to be 25% for spontaneous perceptual rivalry. SNPs rs184765639 and rs75595941 were associated with voluntary modulation, and imaging data suggested genotypic difference of rs184765639 in the surface area of the left caudal-middle frontal cortex. Additionally, converging evidence from multilevel analyses associated genes such asPRMT1with perceptual switching rate, andMIR1178with voluntary modulation strength. In summary, this study discovered specific genetic contributions to perceptual rivalry and its voluntary modulation in human beings. These findings may promote our understanding of psychiatric disorders, as perceptual rivalry is a potential psychiatric biomarker.SIGNIFICANCE STATEMENTPerceptual rivalry is an important visual phenomenon in which our perception of a physically constant visual input spontaneously switches between two different states. There are individual variations in perceptual switching rate and voluntary modulation strength. Our genomic analyses reveal several loci associated with these two kinds of variation. Because perceptual rivalry is thought to be relevant to and potentially an endophenotype for psychiatric disorders, these results may help understand not only visual cognition, but also psychiatric disorders.
- Published
- 2017
38. Multi-level genomic analyses suggest new genetic variants involved in human memory
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Qin Zhou, Shanbi Zhou, Jieyu Chen, Ailong Huang, Zijian Zhu, Dongsheng Ni, Han Lei, Liang Chen, Wenxia Zhang, Wan Fang, Jianing Liu, Yi Rao, Hongming Yan, Biqing Chen, Tianming Gao, Yuping Gu, and Tingmei Chen
- Subjects
0301 basic medicine ,Male ,Adolescent ,Population ,Gene regulatory network ,Single-nucleotide polymorphism ,Genome-wide association study ,Biology ,Pregnancy Proteins ,Polymorphism, Single Nucleotide ,Article ,Minor Histocompatibility Antigens ,03 medical and health sciences ,Young Adult ,Polymorphism (computer science) ,Memory ,Genetics ,Humans ,Gene Regulatory Networks ,education ,Genotyping ,Gene ,Genetics (clinical) ,Transaminases ,education.field_of_study ,TOR Serine-Threonine Kinases ,Heritability ,030104 developmental biology ,Female ,Genome-Wide Association Study ,Transcription Factors - Abstract
Development of high-throughput genotyping platforms provides an opportunity to identify new genetic elements related to complex cognitive functions. Taking advantage of multi-level genomic analysis, here we studied the genetic basis of human short-term (STM, n = 1623) and long-term (LTM, n = 1522) memory functions. Heritability estimation based on single nucleotide polymorphism showed moderate (61%, standard error 35%) heritability of short-term memory but almost zero heritability of long-term memory. We further performed a two-step genome-wide association study, but failed to find any SNPs that could pass genome-wide significance and survive replication at the same time. However, suggestive significance for rs7011450 was found in the shared component of the two STM tasks. Further inspections on its nearby gene zinc finger and at-hook domain containing and SNPs around this gene showed suggestive association with STM. In LTM, a polymorphism within branched chain amino acid transaminase 2 showed suggestive significance in the discovery cohort and has been replicated in another independent population of 1862. Furthermore, we performed a pathway analysis based on the current genomic data and found pathways including mTOR signaling and axon guidance significantly associated with STM capacity. These findings warrant further replication in other larger populations.
- Published
- 2017
39. Correction to: A1CF-Axin2 signal axis regulates apoptosis and migration in Wilms tumor-derived cells through Wnt/β-catenin pathway
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Yuping Gu, Qin Zhou, Dongsheng Ni, Yanxia Hu, Yajun Xie, Yamin Liu, and Jianing Liu
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Chemistry ,Cell ,Wnt signaling pathway ,Wilms' tumor ,Cell Biology ,General Medicine ,medicine.disease ,Cell biology ,medicine.anatomical_structure ,Cell culture ,Apoptosis ,Catenin ,medicine ,AXIN2 ,Stem cell ,Developmental Biology - Abstract
In their paper “A1CF-Axin2 signal axis regulates apoptosis and migration in Wilms tumor-derived cells through Wnt/β-catenin pathway” (In Vitro Cell. Devel. Biol. Anim. 55: 252-259, 2019) Ni et al., regarded the G-401 cell line as being derived from a Wilms’ tumor.
- Published
- 2019
40. Demonstration study of bypass multipond wetland system to enhance river water quality
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Fanhu Zeng, Yu Xie, Yuping Guo, Qigao Li, Bin Tan, Fuyao Huang, Yongbing Huang, Shang Ni, Jiefei Xu, and Junzuo Jia
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aeration reoxygenation pond ,bypass multipond wetland system ,ecological ponds ,modified partition pond ,surface-flow artificial wetlands ,Environmental technology. Sanitary engineering ,TD1-1066 - Abstract
This study focused on the water quality of a river in Wuhan City, China, which is surrounded by ponds that were transformed into a bypass multipond wetland system to improve river water quality. The bypass multipond wetland system included surface-flow artificial wetlands, modified partition ponds, aeration reoxygenation ponds, ecological ponds, and other processes. After the stable operation of the process, the water transparency was higher than 60 cm and the dissolved oxygen (DO) was higher than 5 mg/L, while the ammonia nitrogen (NH3-N) concentration was less than 1.0 mg/L, total phosphorus (TP) was lower than 0.2 mg/L, and chemical oxygen demand (COD) was lower than 20 mg/L, achieving the treatment target. After monitoring the results of each process, the process which best enhanced the water transparency enhancement was the surface-flow of the artificial wetlands and ecological ponds. The aeration reoxygenation pond had the best effect on DO enhancement. The processes that most affected NH3-N and TP removal were the surface-flow artificial wetlands and ecological ponds. The modified parthenogenic pond had the greatest effect on COD removal. The bypass multipond wetland system not only improved the river water quality but also enhanced the river landscape, and can act as a reference for similar river water quality improvement actions. HIGHLIGHTS Surface flow artificial wetlands use artificial water plants instead of substrate to reduce retrofitting costs.; Improved parthenogenic pond set up as deep water and shallow water can work better.; The use of aeration-microbial bacterial agent can remove pollutants better.; Artificial water plants are used in ecological ponds to provide more attachment sites for microorganisms.;
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- 2022
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41. The normal value and influencing factors of shear wave elastography in healthy tibial nerves: A cross‐sectional study
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Shiyao Shang, Wenxiao Yan, Yuping Guo, Hantao Guo, Rumin Chen, Shuzhen Cong, and Chunwang Huang
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influencing factors ,normal value ,shear wave elastography ,tibial nerve ,Medicine - Abstract
Abstract Background and Aims Shear wave elastography is a potential method for evaluating peripheral neuropathy, but lacking reference values. The aim of this study was to measure tibial nerve stiffness in healthy individuals using shear wave elastography and to investigate the influencing factors of tibial nerve stiffness. Methods Shear wave elastography of bilateral tibial nerves was performed in 50 healthy individuals 4 cm proximal to the medial malleolus. Mean shear modulus data of tibial nerves were obtained and recorded. Intra‐ and interobserver agreement were assessed using intraclass correlation coefficients. Differences among groups (grouped by laterality, sex, age, and body mass index) were analyzed with independent‐samples t‐tests and paired t‐tests. Effect size (Cohen's d) was also calculated. Results The intra‐and interobserver agreement were moderate (intraclass correlation coefficient, 0.700–0.747) for all participants, and was poor (intraclass correlation coefficient, 0.265–0.088) in very thin people (body mass index
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- 2023
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42. Simulating the impact of typhoons on air‐sea CO2 fluxes on the northern coastal area of the South China Sea
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Zhao Meng, Yuping Guan, and Yang Feng
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typhoons ,pCO2sea ,CO2 fluxes ,South China Sea ,vertical mixing ,coastal upwelling ,Environmental technology. Sanitary engineering ,TD1-1066 ,Environmental sciences ,GE1-350 ,Science ,Physics ,QC1-999 - Abstract
The South China Sea is a typhoon-prone region, and previous studies have shown that typhoons have significant impacts on air-sea CO _2 fluxes. However, the effect of typhoons on the northern coastal area of the South China Sea is not well understood owing to limited observational data. In this study, we used a coupled model to simulate the impact of four typhoons (Hato, Mangkhut, Nida, and Merbok) on the partial pressure of CO _2 in seawater (pCO _2sea ) and the CO _2 fluxes in this area. Our results show that the coupled model effectively reproduces the spatial pattern of pCO _2sea in this region. The response of pCO _2sea to typhoons was determined by typhoon-induced vertical mixing and coastal upwelling, along with initial oceanic conditions. Typhoon Nida caused a decrease in pCO _2sea with Total Alkalinity and Sea Surface Temperature being the primary factors. However, typhoons Hato, Mangkhut, and Merbok caused an increase in pCO _2sea with Dissolved Inorganic Carbon playing a more prominent role. The average CO _2 fluxes during the passage were approximately 6–14 times higher than those before typhoon passage. These results enhance our understanding of the effect of typhoons on air-sea CO _2 fluxes over the northern coastal area of the South China Sea.
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- 2024
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43. The expression patterns of Tetratricopeptide repeat domain 36 (Ttc36)
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Qingling He, Pan Ju, Zhongshi Lyu, Qin Zhou, Yuping Gu, Jihui Chen, Dongsheng Ni, Zhaomin Mao, Yunhong Liu, Yaoshui Long, Yuru Zhou, and Jianing Liu
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0301 basic medicine ,Repetitive Sequences, Amino Acid ,Amino Acid Motifs ,Kidney Tubules, Proximal ,Mitochondrial Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Antigen ,Protein Domains ,Lectins ,Genetics ,Animals ,DAPI ,Molecular Biology ,biology ,Liver and kidney ,Gene Expression Regulation, Developmental ,Membrane Proteins ,Embryonic stem cell ,Molecular biology ,Tetratricopeptide ,EGTA ,030104 developmental biology ,chemistry ,Polyclonal antibodies ,Calbindin 1 ,biology.protein ,Double immunofluorescence staining ,Rabbits ,Carrier Proteins ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Tetratricopeptide repeat domain 36 (Ttc36), whose coding protein belongs to tetratricopeptide repeat (TPR) motif family, has not been studied extensively. We for the first time showed that Ttc36 is evolutionarily conserved across mammals by bioinformatics. Rabbit anti-mouse Ttc36 polyclonal antibody was generated by injecting synthetic full-length peptides through "antigen intersection" strategy. Subsequently, we characterized Ttc36 expression profile in mouse, showing its expression in liver and kidney both from embryonic day 15.5 (E15.5) until adult, as well as in testis. Immunofluorescence staining showed that Ttc36 is diffusely expressed in liver, however, specifically in kidney cortex. Thus, we further compare Ttc36 with proximal tubules (PT) marker Lotus Tetragonolobus Lectin (LTL) and distal tubules (DT) marker Calbindin-D28k respectively by double immunofluorescence staining. Results showed the co-localization of Ttc36 with LTL rather than Calbindin-D28k. Collectively, on the basis of the expression pattern, Ttc36 is specifically expressed in proximal distal tubules.
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- 2016
44. Second-order geometric continuous processing of singular points
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Yuping Gu, Hao Liu, Yuehong Tang, and Biao Meng
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Geometric continuity ,Geometric transformation ,Order (ring theory) ,Applied mathematics ,Geometry ,Subdivision surface ,Geometric shape ,Mathematics - Published
- 2015
45. Classification of Imbalanced Data Based on MTS-CBPSO Method: A Case Study of Financial Distress Prediction.
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Yuping Gu, Longsheng Cheng, and Zhipeng Chang
- Abstract
The traditional classification methods mostly assume that the data for class distribution is balanced, while imbalanced data is widely found in the real world. So it is important to solve the problem of classification with imbalanced data. In Mahalanobis-Taguchi system (MTS) algorithm, data classification model is constructed with the reference space and measurement reference scale which is come from a single normal group, and thus it is suitable to handle the imbalanced data problem. In this paper, an improved method of MTS-CBPSO is constructed by introducing the chaotic mapping and binary particle swarm optimization algorithm instead of orthogonal array and signal-to-noise ratio (SNR) to select the valid variables, in which G-means, F-measure, dimensionality reduction are regarded as the classification optimization target. This proposed method is also applied to the financial distress prediction of Chinese listed companies. Compared with the traditional MTS and the common classification methods such as SVM, C4.5, k-NN, it is showed that the MTS-CBPSO method has better result of prediction accuracy and dimensionality reduction. [ABSTRACT FROM AUTHOR]
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- 2019
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46. Elevated PGT promotes proliferation and inhibits cell apoptosis in preeclampsia by Erk signaling pathway
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Huiyuan Pang, Di Lei, Jinfa Huang, Yuping Guo, and Cuifang Fan
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Preeclampsia ,PGT ,Proliferation ,Apoptosis ,Erk pathway ,Biology (General) ,QH301-705.5 ,Medicine - Abstract
Prostaglandins participate in maternal recognition of pregnancy, implantation and maintenance of gestation. Prostaglandin transporter (PGT), as a candidate molecule of prostaglandin carriers, might be involved in the pathogenesis of preeclampsia. In preeclampsia (PE) patients’ placental tissue, we identified PGT by RNA sequencing, measured its expression pattern by quantitative real-time PCR and Western blot. PGT was found to be upregulated in preeclamptic placental tissue. The expression pattern of PGT in PE was double confirmed by eight Gene Expression Omnibus (GEO) databases. In abortion tissues at 6–8 weeks, we then observed the cellular location of PGT by Immunofluorescence technique (IF) and found PGT located in trophoblast cell of the placenta of early pregnancy. In vitro studies revealed that forced expression of PGT in HTR8/Sveno cell inhibited its apoptosis, but promoted its proliferation by activating Erk signaling. In vivo study, we used reduced uterine perfusion pressure (RUPP) rat model and L-NAME-induced preeclampsia-like rats to study the possible role of PGT in preeclampsia. And PGT was found to be upregulated in both preeclampsia rat models by Immunohistochemical (IHC) staining. Newly identified PGT plays an important role in trophoblast proliferation via Erk signaling, providing new insights for understanding the pathogenesis of PE.
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- 2023
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47. High performance tracking control system under measurement constraints by multi-rate control
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Yuping Gu and Masayoshi Tomizuka
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Engineering ,Sequence ,business.industry ,Control theory ,Control system ,Trajectory ,Feed forward ,Tracking system ,Control engineering ,Digital control ,Tracking (particle physics) ,business - Abstract
This paper describes a multi-rate feedback/feedforward system applicable to the design and analysis of tracking control system under measurement constraints. In this system, the feedback controller is updated at the slow rate, while the feedforward controller is updated at the fast rate with a desired sequence, which is obtained by interpolating the slow sampled sequence of the desired trajectory. The tracking performance is evaluated by including intersample behavior of the output. Illustrative examples are given to further explain the advantages of multi-rate control.
- Published
- 1999
48. Multi-Rate Feedforward Tracking Control for Plants With Nonminimum Phase Discrete Time Models
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Yuping Gu and Masayoshi Tomizuka
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Engineering ,business.industry ,Computer science ,Mechanical Engineering ,Control (management) ,Open-loop controller ,Phase (waves) ,Feed forward ,Control engineering ,Feedback loop ,Nonlinear control ,Tracking (particle physics) ,Signal ,Computer Science Applications ,Discrete time and continuous time ,Control and Systems Engineering ,Control theory ,Control system ,Digital control ,business ,Instrumentation ,Information Systems - Abstract
This paper is concerned with performance enhancement of tracking control systems by multi-rate control. The feedback controller is updated at the same rate as the sampling rate of the output measurements. The feedforward controller processes the desired output signal for high accuracy tracking, and its output is updated at a rate N-times faster than the sampling rate of the output measurements. The discrete time model of the controlled plant may possess unstable zeros, and the zero phase error tracking controller (ZPETC) is used as a feedforward controller. Inter-sample behavior of the plant is included in evaluating the tracking performance of the multi-rate system. Illustrative examples are given to show advantages of the proposed multi-rate feedback/feedforward control scheme.
- Published
- 1999
49. HPV16 E6-specific T cell response and HLA-A alleles are related to the prognosis of patients with cervical cancer
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Hongchao Cai, Yaning Feng, Peiwen Fan, Yuping Guo, Gulina Kuerban, Cheng Chang, Xuan Yao, Yanchun Peng, and Ruozheng Wang
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Human papillomavirus 16 ,Cervical cancer ,T cell immune response ,E6 and E7 peptides ,HLA ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background T cell epitopes are polypeptide fragments presented to T cell receptors by MHC molecules encoded by human leukocyte antigen (HLA) genes after antigen-presenting cell processing, which is the basis for the study of antigen immune mechanism and multi-epitope vaccine. This study investigated T cell response to HPV16 E6 and E7 in patients with cervical squamous cell carcinoma (CSCC). Also, the HLA-A allele distribution was compared among patients and evaluated as a factor to predict prognosis in these patients. Materials and methods This study recruited a total of 76 patients with International Federation of Gynaecology and Obstetrics (FIGO) stage IIB–IIIB CSCC. Mononuclear cells were isolated from the peripheral blood before any treatment and then enzyme-linked immunosorbent spot (ELISpot) assay was employed to measure the E6 and E7-specific T cell response. HLA‐A alleles were typed using Sanger sequencing‐based typing techniques with DNA extracted from the peripheral blood. The correlation between the T cell responses, HLA‐A allele distribution and patient prognosis were analysed using the Kaplan–Meier method, univariate and multivariate Cox proportional hazard models. Results The frequency of HPV E6-specific T cell responses in patients with pelvic lymph node metastasis was lower than that in patients without metastasis (P = 0.022). The 5-year overall survival (OS) rates of patients were 87.5% for those responding to multiple overlapping peptides, 72.7% for those responding to 1–2 overlapping peptides and 47.7% for non-responders (P = 0.032). Cox regression analysis indicated that the presence of HLA*A02:07 was independently associated with worse OS (hazard ratio [HR] 3.042; 95% confidence interval [CI] 1.348–6.862; P = 0.007), while concurrent chemoradiation therapy (CCRT) was independently associated with better OS (HR 0.475; 95% CI 0.232–0.975; P = 0.042). Conclusion The results of our study demonstrated that the level of HPV16 E6-specific T cell response and HLA*A02:07 were correlated with prognosis in patients with advanced CSCC.
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- 2021
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50. Primary resistance to first- and second-generation ALK inhibitors in a non-small cell lung cancer patient with coexisting ALK rearrangement and an ALK F1174L-cis-S1189C de novo mutation: A case report
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Jiuzhou Zhao, Xiang Li, Ruizhe Fan, Yaping Qin, Zhizhong Wang, Bo Wang, Shaomei Li, Jianfeng Fan, Xinxin Wu, Hongxia Liu, Yuping Guan, Yinfeng Liang, Xiao Zhang, and Yongjun Guo
- Subjects
non-small cell lung cancer (NSCLC) ,next generation sequencing (NGS) ,EML4-ALK ,F1174L ,S1189C ,de novo mutation ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The effectiveness of the tyrosine kinase inhibitor ALK (TKI) for non-small cell lung cancer has been confirmed. However, resistance to ALK-TKIs seems inevitable. Mutations in the ALK kinase domain have been reported as an important mechanism of acquired resistance to ALK therapy. However, patients with de novo ALK kinase domain mutations and ALK rearrangements who were not treated with ALK inhibitors have rarely been reported. Here, we report a case of primary drug resistance to first- and second-generation ALK inhibitors in a NSCLC patient with ALK-rearrangement. The next-generation sequencing test of the pathological biopsy showed that the de novo ALK kinase domain mutation F1174L-cis-S1189C may be the cause of primary drug resistance.
- Published
- 2022
- Full Text
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