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Background Cypripedium subtropicum is a unique, endangered lady’s slipper orchid with evergreen leaves on non-dormant shoots that is native to southwestern China. This study documents the major developmental events in C. subtropicum seed development from fertilization to seed maturity, determines the optimum period for seed collection, and examines the cytokinin requirements for asymbiotic germination and protocorm survival. Results Structural studies revealed that embryo development proceeded after successful fertilization at 60 days after pollination (DAP). At 105 DAP, a globular embryo with the shrinking inner seed coat was observed, and seeds collected at this time point exhibited optimal germination. After 120 DAP, most seeds had a mature embryo within the capsule, and within the cells of the embryo proper, numerous proteins/lipid bodies were present as the main storage products. In addition, the inner seed coat had compressed into a thin layer that tightly enclosed the embryo, while the outer seed coat had progressively elongated, resulting in a hair-like appearance of the mature seed. Histochemical staining using Nile red and toluidine blue O (TBO) indicated that the lignified inner and outer seed coats may lead to coat-imposed dormancy. Seeds collected at this stage germinated poorly. Analyses of cytokinin preferences and optimal concentrations for germination and protocorm survival showed that both 6-(γ,γ-dimethylallylamino) purine (2iP) and 6-benzylaminopurine (BA) enhanced germination compared with the control, although higher concentrations of BA (4 and 8 μM) suppressed germination. The protocorm survival rate improved with increasing 2iP concentration. Conclusions This study provides a reproducible procedure for culturing immature seeds of C. subtropicum based on a defined time schedule of seed development. In addition, the cytokinin 2iP was shown to improve germination and protocorm survival. This study provides a scientific basis for seedling establishment through asymbiotic seed culture for further reintroduction efforts.

Gastrodia elata, a fully mycoheterotrophic orchid without photosynthetic ability, only grows symbiotically with the fungus Armillaria. The mechanism of carbon distribution in this mycoheterotrophy is unknown. We detected high sucrose concentrations in all stages of Gastrodia tubers, suggesting sucrose may be the major sugar transported between fungus and orchid. Thick symplasm-isolated wall interfaces in colonized and adjacent large cells implied involvement of sucrose importers. Two sucrose transporter (SUT)-like genes, GeSUT4 and GeSUT3, were identified that were highly expressed in young Armillaria-colonized tubers. Yeast complementation and isotope tracer experiments confirmed that GeSUT4 functioned as a high-affinity sucrose-specific proton-dependent importer. Plasma-membrane/tonoplast localization of GeSUT4-GFP fusions and high RNA expression of GeSUT4 in symbiotic and large cells indicated that GeSUT4 likely functions in active sucrose transport for intercellular allocation and intracellular homeostasis. Transgenic Arabidopsis overexpressing GeSUT4 had larger leaves but were sensitive to excess sucrose and roots were colonized with fewer mutualistic Bacillus, supporting the role of GeSUT4 in regulating sugar allocation. This is not only the first documented carbon import system in a mycoheterotrophic interaction but also highlights the evolutionary importance of sucrose transporters for regulation of carbon flow in all types of plant-microbe interactions.

In Orchidaceae, pollination is mostly animal-mediated, and one-third of species have evolved a deceptive pollination mechanism without rewards. Cypripedium is a representative lineage of nonrewarding orchids restricted to temperate regions. Cypripedium subtropicum flowers are pollinated by hoverflies and have hairy tufts that visually resemble an aphid colony covered with honey dew. We recorded the behavior of hoverflies on the flowers, determined the breeding system of the species and the structure of hairy tufts, and investigated the roles of hairy tufts and floral volatiles in this specialized pollination by using pollination experiments, scanning electron microscopy, bioassays and chemical analyses. The white hairy tufts covering the sidelobes of the labellum provide edible rewards and serve as crucial visual lures for hoverflies. The flowers emit primarily (E)-β-farnesene and a smaller amount of β-pinene that were found to attract hoverflies. Our results suggest that C. subtropicum uses both visual mimicry of an aphid-colonized labellum with a reward and chemical mimicry of aphid alarm pheromones to attract hoverflies for pollination. This is the first described example of a rewarding mimicry system in plants, where the models are animals with their secretions and the reward is similar in nutrients to that of the model mimicked.

It is essential for the survival and reproduction of parasitoids to adapt to the fluctuating host resources. Phenotypic plasticity may enable a parasitoid species to successfully achieve its control over a range of host species to maximize fitness in different hosts that may each require dissimilar, possibly conflicting, specific adaptations. However, there is limited information on how the fitness effects of host switching partition into costs due to the novelty of host species, where unfamiliarity with host physiological and morphological changes and its anti-parasite defenses reduces parasitoid growth, survivorship and/or reproductive success. In this study, the parasitoid fungus Ophiocordyceps unilateralis sensu lato was found to sympatrically infect a principal host ant species and other alternative sympatric hosts in the forest of central Taiwan. We herein report that the occurrence of ant infections by O. unilateralis s.l. shows spatial and temporal variation patterns on different host species. Results showed that the height from the ground to the leaf where the infected ants grip on, perithecia-forming ability, and growth rate of the stroma of the parasitoid fungus were dissimilar on different host species. These host range expansions not only related the fitness of O. unilateralis s.l. but also influenced the expression of extended phenotypic traits. Our findings revealed that a generalist parasitoid fungus suffered an evolutionary tradeoff between host breadth expansion and host-use efficiency.

Shoot multiplication induced by exogenous cytokinins (CKs) has been commonly used in Phalaenopsis micropropagation for commercial production. Despite this, mechanisms of CKs action on shoot multiplication remain unclear in Phalaenopsis. In this study, we first identified key CKs metabolic genes, including six isopentenyltransferase (PaIPTs), six cytokinin riboside 5′ monophosphate phosphoribohydrolase (PaLOGs), and six cytokinin dehydrogenase (PaCKXs), from the Phalaenopsis genome. Then, we investigated expression profiles of these CKs metabolic genes and endogenous CKs dynamics in shoot proliferation by thidiazuron (TDZ) treatments (an artificial plant growth regulator with strong cytokinin-like activity). Our data showed that these CKs metabolic genes have organ-specific expression patterns. The shoot proliferation in vitro was effectively promoted with increased TDZ concentrations. Following TDZ treatments, the highly expressed CKs metabolic genes in micropropagated shoots were PaIPT1, PaLOG2, and PaCKX4. By 30 days of culture, TDZ treatments significantly induced CK-ribosides levels in micropropagated shoots, such as tZR and iPR (2000-fold and 200-fold, respectively) as compared to the controls, whereas cZR showed only a 10-fold increase. Overexpression of PaIPT1 and PaLOG2 by agroinfiltration assays resulted in increased CK-ribosides levels in tobacco leaves, while overexpression of PaCKX4 resulted in decreased CK-ribosides levels. These findings suggest de novo biosynthesis of CKs induced by TDZ, primarily in elevation of tZR and iPR levels. Our results provide a better understanding of CKs metabolism in Phalaenopsis micropropagation.

The chlorophyllous, terrestrial orchid

Shoot multiplication induced by exogenous cytokinins (CKs) has been commonly used in

The aim of this study was to develop an efficient protocol for shoot tip culture from adult plants of Paphiopedilum Pfitzer. A considerable seasonal effect on explant collection was observed in the aseptic cultures established from adult plants, including the survival and microbial contamination of explants. The shoot tip explants excised from adult plants in February and May showed higher survival and had less contamination than those explants excised in August and November. Moreover, the season of explant collection also affected the subsequent shoot forming capacity and multiplication of axillary buds. In Paphiopedilum ‘In-Charm Silver Bell’, higher shoot forming capacity was observed in February and May, whereas higher shoot multiplication was observed only in February. In Paphiopedilum ‘Hsinying Maudiae Leopard’, both February and May were optimal timing for shoot forming capacity and multiplication. We also demonstrated the effectiveness of transcinnamic acid (tCA), an antiauxin chemical in diminishing the apical dominance of shoot tip explant and thus improving the axillary bud outgrowth. In P. ‘In-Charm Silver Bell’, the addition of 100 μM tCA plus 13.3 μM 6-benzylaminopurine (BA) for 1 month promoted axillary shoot bud formation from shoot tip explants as compared with the control.

Most species engage in broad interactions, in which they interact with multiple partner species. The evolutionary processes that generate such generalized interactions remain unknown, partly due to the difficulty in comparing their breadth. We argue that the interaction specificity of species involved in broad interactions evolves in three ways: (a) assemblage specialization, in which a species specializes on particular host species that contribute unique resources, yielding specialization on the entire host assemblage; (b) apparent generalism, in which a species specializes on one or few host species that contribute unique resources, but also associates with other host species that contribute functionally redundant resources; and (c) true generalism, in which a species associates with multiple hosts that overlap functionally, and that are geographically interchangeable based on opportunity for encounter, leading to frequent host switching. We performed a phylogenetically controlled analysis of data on mycorrhizal fungal associations for approximately 25% of the orchid subfamily Cypripedioideae to determine whether these plants have specialized on their mycorrhizal fungal communities, or whether they are true generalists. We also assessed the impact of environmental factors on these associations. Our results suggested strong support for apparent generalism, suggesting strong specialization on particular, dominant fungi and weak specialization on others. Large orchid clades associated with dominant fungal species, notably Tulasnella cystidiophora for genus Cypripedium, and T. cystidiophora and T. calospora for genus Paphiopedilum. Significant phylogenetic signal in fungal species richness per plant species, but not in the fungal phylogenetic diversity per plant species nor in the composition of fungal assemblages across orchid species suggested that plant phylogeny is an important determinant of fungal association. Mixed linear models showed that environment influenced specificity across plant species, and that observed differences were strongly driven by differences in sampling effort. Synthesis. We found evidence of specialization of plant species on dominant fungal species, and to a lesser extent on their close relatives. The strong dominance of particular fungal species in these associations suggests important ecological roles for them, while environmental gradients in specificity suggest strong environmental filtering of these interactions.

Mycorrhizal associations are essential for orchid germination and seedling establishment, and thus may constrain the distribution and abundance of orchids under natural conditions. Previous works have shown that germination and seedling establishment in several orchids often decline with increasing distance from adult plants, resulting in nonrandom spatial patterns of seedling establishment. In contrast, individuals of the fully mycoheterotrophic orchid Gastrodia confusoides often tend to have random spatial patterns of distribution within bamboo forests. Since G. confusoides is parasitic on litter-decaying fungi, its random spatial patterns of distribution may be due to highly scattered patterns of litter-decaying fungi within bamboo forests. To test this hypothesis, we first identified the main mycorrhizal fungi associating with developing seeds and adult plants using Miseq high-throughput sequencing. Next, we combined seed germination experiments with quantitative PCR (qPCR) analyses to investigate to what extent the abundance of mycorrhizal fungi affected spatial patterns of seed germination. Our results show that seed germination and subsequent growth to an adult stage in G. confusoides required a distinct switch in mycorrhizal partners, in which protocorms associated with a single Mycena fungus, while adults associated with a fungus from the genus Gymnopus. A strong, positive relationship was observed between germination and Mycena abundance in the litter, but not between germination and Gymnopus abundance. Fungal abundance was not significantly related to the distance from the adult plants, and consequently germination was also not significantly related to the distance from adult plants. Our results provide the first evidence that the spatial distribution and abundance of litter-decaying fungi are distributed randomly within the bamboo forest and independently from G. confusoides adults.

Background: Vanilla planifolia is an important tropical orchid for production of natural vanilla flavor. Traditionally, V. planifolia is propagated by stem cuttings, which produces identical genotype that are sensitive to virulent pathogens. However, sexual propagation with seed germination of V. planifolia is intricate and unstable because of the extremely hard seed coat. A better understanding of seed development, especially the formation of impermeable seed coat would provide insights into seed propagation and conservation of genetic resources of Vanilla.Results: We found that soaking mature seeds in 4 % sodium hypochlorite solution from 75 to 90 min significantly increased germination and that immature seeds collected at 45 days after pollination (DAP) had the highest germination percentage. We then investigated the anatomical features during seed development that associated with the effect of seed pretreatment on raising seed germination percentage. The 45-DAP immature seeds have developed globular embryos and the thickened non-lignified cell wall at the outermost layer of the outer seed coat. After 60 DAP, the cell wall of the outermost layer of the outer seed coat became lignified and finally compressed into a thick envelope. These features matches the significant decreases of immature seed germination percentage after 60 DAP. Conclusion: We report a reliable protocol for seed pretreatment of mature seeds and for immature seeds culture based on a defined time schedule of V. plantifolia seed development. The thickened and lignified seed coat formed an impermeable envelope surrounding the embryo, and might play an important role in seed dormancy of V. plantifolia.

In Phalaenopsis, interspecific hybridization has been broadly used for breeding cultivars with new traits of flower colors. Yellow pigments in Phalaenopsis cultivars naturally are derived from the diploid species in subgenus Polychilos, including P. amboinensis, P. fasciata, P. lueddemanniana and P. venosa, etc. Commercial cultivars of yellow Phalaenopsis were made by crossing the diploid species in subgenus Polychilos with tetraploid standard-type cultivars, and this often resulted in the formation of triploid progenies. Here we review the breeding history of yellow Phalaenopsis cultivars from a cytogenetic perspective. Chromosome analyses indicate polyploidization playing an important role in these breeding programs and reveal different chromosome introgression of section Polychilos species in these yellow cultivars. The cytogenetic data of these cultivars could provide basic knowledge for yellow Phalaenopsis breeding.

Background Vanilla planifolia is an important tropical orchid for production of natural vanilla flavor. Traditionally, V. planifolia is propagated by stem cuttings, which produces identical genotype that are sensitive to virulent pathogens. However, propagation with seed germination of V. planifolia is intricate and unstable because the seed coat is extremely hard with strong hydrophobic nature. A better understanding of seed development, especially the formation of impermeable seed coat would provide insights into seed propagation and conservation of genetic resources of Vanilla. Results We found that soaking mature seeds in 4% sodium hypochlorite solution from 75 to 90 min significantly increased germination. For the culture of immature seeds, the seed collection at 45 days after pollination (DAP) had the highest germination percentage. We then investigated the anatomical features during seed development that associated with the effect of seed pretreatment on raising seed germination percentage. The 45-DAP immature seeds have developed globular embryos and the thickened non-lignified cell wall at the outermost layer of the outer seed coat. Seeds at 60 DAP and subsequent stages germinated poorly. As the seed approached maturity, the cell wall of the outermost layer of the outer seed coat became lignified and finally compressed into a thick envelope at maturity. On toluidine blue O staining, the wall of outer seed coat stained greenish blue, indicating the presence of phenolic compounds. As well, on Nile red staining, a cuticular substance was detected in the surface wall of the embryo proper and the innermost wall of the inner seed coat. Conclusion We report a reliable protocol for seed pretreatment of mature seeds and for immature seeds culture based on a defined time schedule of V. plantifolia seed development. The window for successful germination of culturing immature seed was short. The quick accumulation of lignin, phenolics and/or phytomelanins in the seed coat may seriously inhibit seed germination after 45 DAP. As seeds matured, the thickened and lignified seed coat formed an impermeable envelope surrounding the embryo, which may play an important role in inducing dormancy. Further studies covering different maturity of green capsules are required to understand the optimal seed maturity and germination of seeds.

Background Seed dispersal allows plants to colonize new habitats that has an significant influence on plant distribution and population dynamics. Orchids produce numerous tiny seeds without endosperm, which are considered to be mainly wind-dispersed. Here, we report avian seed dispersal for an early diverging orchid species, Neuwiedia singapureana, which produces fleshy fruits with hard seed coats in the understory of tropical forests. Results Neuwiedia singapureana produced fleshy fruits that turned red in autumn, and birds were confirmed to be the primary seed dispersers. As compared to its sister species, N. veratrifolia with dehiscent capsular fruits, embryos of N. singapureana were larger and enclosed by thickened and lignified seed coats. After passing through the digestive tracts of birds, the seeds still stayed alive, and the walls of seed coat contained several cracks. The germination percentage increased significantly for digested seeds as compared with seeds from intact fruits. Conclusion The thickened and lignified seed coat may protect seeds as they passed through the digestive tracts of birds. Taken together with a recent report of insect-mediated seed dispersal system in the subfamily Apostasioideae, the animal-mediated seed dispersal may be an adaptive mechanism promoting the success of colonization in dark understory habitats.

Additional file 1: Table S1. Fungal strains used in this study.

Two orthologues of Arabidopsis FOREVER YOUNG FLOWER (FYF), CaFYF1 and CaFYF2, were identified from Cattleya intermedia. To investigate the function of these two genes, we performed ectopic expression of CaFYF1/2 in Arabidopsis. Delayed flower senescence and abscission were observed in 35S::CaFYF1/2 transgenic Arabidopsis plants. Furthermore, once CaFYF1/2 was fused with the strong repressor domain SRDX, severe delayed flower senescence and abscission were observed in 35S::CaFYF1/2+SRDX transgenic Arabidopsis plants. In contrast, when 35S::CaFYF1/2 was converted to a potent activator by fusion with the VP16-AD motif, flower senescence and abscission were promoted in these 35S::CaFYF1/2+VP16 transgenic dominant-negative mutant Arabidopsis plants. These results indicated that similar to Arabidopsis FYF, CaFYF1/2 also act as repressors in controlling floral organ senescence and abscission in transgenic Arabidopsis plants. The delayed senescence and abscission of the flower organs in 35S::CaFYF1/2 and 35S::CaFYF1/2+SRDX transgenic Arabidopsis plants were unaffected by ethylene treatment. Genes of the ethylene signaling and abscission-associated pathways, such as EDF1/2/3/4, BOP1/2, and IDA, were repressed in 35S::CaFYF1/2 and 35S::CaFYF1/2+SRDX transgenic Arabidopsis plants. Furthermore, 35S::CaFYF1/2 and 35S::CaFYF1/2+SRDX transgenic Arabidopsis plants showed additional morphological defects, such as short sepals and petals, which were correlated with the upregulation of the DELLA genes RGA, GAI, RGL1, and RGL2. These results suggested a possible role for Cattleya orchid CaFYF1/2 in controlling floral senescence/abscission by suppressing ethylene signaling and abscission-associated genes as well as controlling flower organ elongation through negative regulation of GA response by activating the expression of the DELLA genes during flower development.

PREMISE OF THE STUDY The slipper orchids (Cypripedioideae) are a morphologically distinct subfamily of Orchidaceae. They also have some of the largest genomes in the orchids, which may be due to polyploidy or some other mechanism of genome evolution. We generated 10 transcriptomes and incorporated existing RNA-seq data to infer a multilocus nuclear phylogeny of the Cypripedioideae and to determine whether a whole-genome duplication event (WGD) correlated with the large genome size of this subfamily. Knowing more about timing of ancient polyploidy events can help us understand the evolution of one of the most species-rich plant families. METHODS Transcriptome data were used to identify low-copy orthologous genes to infer a phylogeny of Orchidaceae and to identify paralogs to place any WGD events on the species tree. KEY RESULTS Our transcriptome phylogeny confirmed relationships published in previous studies that used fewer markers but incorporated more taxa. We did not find a WGD event at the base of the slipper orchids; however, we did identify one on the Orchidaceae stem lineage. We also confirmed the presence of a previously identified WGD event deeper in the monocot phylogeny. CONCLUSIONS Although WGD has played a role in the evolution of Orchidaceae, polyploidy does not appear to be responsible for the large genome size of slipper orchids. The conserved set of 775 largely single-copy nuclear genes identified in this study should prove useful in future studies of orchid evolution.

Procedures for asymbiotic seed germination and seed storage were established for Cypripedium lentiginosum, an endangered lady’s slipper orchid. Based on a defined time frame, the optimum germination was recorded for immature seeds collected at 90–105 days after pollination (DAP), at which time early globular to globular embryos can be observed. After 120 DAP, as seeds matured, the germination decreased sharply. At maturity, two distinct layers of seed coats enclosed the embryos tightly. Histochemical staining suggests that the lignified seed coats may cause the coat-imposed dormancy. Pretreatments with 0.5 or 1% NaOCl for 45 min were effective in increasing the permeability of seed coats and improving the germination of mature seeds. Among different MS salt concentrations examined, the germination and protocorm formation were higher for seeds cultured on 1/4 and 1/2 MS media. Among cytokinins tested, only 2iP showed a stimulatory effect on germination, while both 2iP and TDZ enhanced the formation of multiple protocorm-like bodies. For seeds dehydrated to 13.5% of initial water content and stored at 5 °C, both germination and viability decreased slightly after 12 months of storage, while the extended storage to 24 months resulted in a sharp decrease of germination and viability. Using this protocol, seedlings with numerous roots were readily acclimatized to greenhouse conditions after 6 months of culture.

Parasite manipulation of host behavior is a compelling example of an extended phenotype. Some parasitic Ophiocordyceps species manipulate their ant victims to behave like zombies, causing them to walk abnormally, have convulsions that make them fall down, and climb vegetation to bite the veins or margins on the underside of plant leaves. Manipulation of the ants' behavior supports the fungus's growth and reproductive success. This study reports that Ophiocordyceps pseudolloydii can naturally infect Dolichoderus thoracicus ants in a broad-leaved forest in central Taiwan. The infected ants behaved as zombies but did not display ‘death grip’ behavior. Instead, the entire ant was covered in a dense matrix of fungal hyphae, securing the abdominal segments and the mandibles, but not the legs, to the leaf. Furthermore, the direction of the canopy opening and the orientation of the ants' heads were correlated, suggesting that a direct solar cue orients the dying ant. By detailed survey records from three squares with different canopy geometries within the graveyard areas, our data indicate that sunlight plays an important role in manipulation of ant hosts. These findings provide further indications of how the parasites have evolved to manipulate the host's behavior to increase fitness of the fungus.

Background Anoectochilus roxburghii is known for its medicinal properties, culinary interests, and ornamental applications in Asian countries. Recent studies focus mainly on its phytochemical properties and little is known about its reproductive biology, especially seed and embryo development. This study documents the major developmental events in seed and embryo development of A. roxburghii upon pollination. Results Morphological and histological studies revealed that upon pollination embryo and seed development is completed in 40 days. Ovular primordia are at the megaspore mother cell stage at the time of anthesis. Embryo development proceeds after a successful fertilization. A. roxburghii has a single cell suspensor. It elongates but not extended beyond the seed coat. A distinct cell gradient is present within the embryo proper with smaller cells located towards the chalazal end of the seed. Proteins and lipids are the major storage products within the embryo proper cells. At the stage of early globular embryo, the inner seed coat has degenerated and thus a carapace is absent at maturity. A limited deposition of lignin is detected in the mature seed coat. Conclusions The seed of A. roxburghii matures rapidly. At maturity, the embryo proper has a well-differentiated apical zone with little constraints impose by the seed coat. These characters indicate adaptations to fast germination that may ensure a successful colonization in the shaded forest understory. Electronic supplementary material The online version of this article (10.1186/s40529-019-0254-1) contains supplementary material, which is available to authorized users.

The phytohormone abscisic acid (ABA) is involved in regulating seed dormancy and germination. A crucial step of ABA biosynthesis in higher plants is the oxidative cleavage of cis-epoxycarotenoids by 9-cis-epoxycarotenoid dioxygenase (NCED). Seed development in orchids is unusual because the embryos are minute in size, without obvious histodifferentiation, and lack endosperm. To understand the regulation of ABA biosynthesis in orchid seeds, we isolated and characterized a full-length cDNA encoding an NCED homologue, PtNCED1, from developing seeds of an ornamental orchid, Phaius tankervilliae. Germination percentage was high at 90 days after pollination (DAP), when a globular embryo proper with a degenerating suspensor was evident. After 90 DAP, seed maturation was accompanied by a decrease in water content and a concomitant increase in ABA content and PtNCED1 mRNA level along with a marked decrease in germination percentage. Mature seeds pretreated with NaOCl solution lowered ABA content and improved seed germination. Moreover, after seed germination, developing protocorms could respond to dehydration stress. Dehydration of protocorms stimulated an increase in PtNCED1 level along with ABA content. Our results provide evidence of the involvement of PtNCED1 in regulating endogenous ABA content in developing seeds and protocorms. The accumulation of endogenous ABA content in orchid seeds may have a critical role in seed dormancy and the protocorm response to water stress after seed germination.

Hydroxyproline-rich glycoproteins (HRGPs) are abundant cell wall components involved in mycorrhizal symbiosis, but little is known about their function in orchid mycorrhizal association. To gain further insight into the role of HRGPs in orchid symbiosis, the location and function of HRGPs were investigated during symbiotic germination of Dendrobium officinale. The presence of JIM11 epitope in developing protocorms was determined using immunodot blots and immunohistochemical staining procedures. Real-time PCR was also employed to verify the expression patterns of genes coding for extensin-like genes selected from the transcriptomic database. The importance of HRGPs in symbiotic germination was further investigated using 3,4-dehydro-L-proline (3,4-DHP), an inhibitor of HRGP biosynthesis. In symbiotic cultures, immunodot blots of JIM11 signals were moderate in mature seeds, and the signals became stronger in swollen embryos. After germination, signal intensities decreased in developing protocorms. In contrast, in asymbiotic cultures, JIM11 signals were much lower as compared with those stages in symbiotic cultures. Immunofluorescence staining enabled the visualization of JIM11 epitope in mature embryo and protocorm cells. Positive signals were initially localized in the larger cells near the basal (suspensor) end of uninfected embryos, marking the future colonization site of fungal hyphae. After 1 week of inoculation, the basal end of embryos had been colonized, and a strong signal was detected mostly at the mid- and basal regions of the enlarging protocorm. As protocorm development progressed, the signal was concentrated in the colonized cells at the basal end. In colonized cells, signals were present in the walls and intracellularly associated with hyphae and the pelotons. The precise localization of JIM11 epitope is further examined by immunogold labeling. In the colonized cells, gold particles were found mainly in the cell wall and the interfacial matrix near the fungal cell wall. Four extensin-like genes were verified to be highly up-regulated in symbiotically germinated protocorms as compared to asymbiotically germinated ones. The 3,4-DHP treatment inhibited the accumulation of HRGPs and symbiotic seed germination. In these protocorms, fungal hyphae could be found throughout the protocorms. Our results indicate that HRGPs play an important role in symbiotic germination. They can serve as markers for fungal colonization, establishing a symbiotic compartment and constraining fungal colonization inside the basal cells of protocorms.

Table S2. Characteristics of the top four-most SatA abundant monomers. (DOCX 12 kb)

Table S3. The vouchers and sources used for Illumina HiSeq, RepeatExplorer (RE) clustering, FISH and genome size estimation in this study. (DOCX 18 kb)

Background Satellite DNA is a rapidly diverging, largely repetitive DNA component of many eukaryotic genomes. Here we analyse the evolutionary dynamics of a satellite DNA repeat in the genomes of a group of Asian subtropical lady slipper orchids (Paphiopedilum subgenus Parvisepalum and representative species in the other subgenera/sections across the genus). A new satellite repeat in Paphiopedilum subgenus Parvisepalum, SatA, was identified and characterized using the RepeatExplorer pipeline in HiSeq Illumina reads from P. armeniacum (2n = 26). Reconstructed monomers were used to design a satellite-specific fluorescent in situ hybridization (FISH) probe. The data were also analysed within a phylogenetic framework built using the internal transcribed spacer (ITS) sequences of 45S nuclear ribosomal DNA. Results SatA comprises c. 14.5% of the P. armeniacum genome and is specific to subgenus Parvisepalum. It is composed of four primary monomers that range from 230 to 359 bp and contains multiple inverted repeat regions with hairpin-loop motifs. A new karyotype of P. vietnamense (2n = 28) is presented and shows that the chromosome number in subgenus Parvisepalum is not conserved at 2n = 26, as previously reported. The physical locations of SatA sequences were visualised on the chromosomes of all seven Paphiopedilum species of subgenus Parvisepalum (2n = 26–28), together with the 5S and 45S rDNA loci using FISH. The SatA repeats were predominantly localisedin the centromeric, peri-centromeric and sub-telocentric chromosome regions, but the exact distribution pattern was species-specific. Conclusions We conclude that the newly discovered, highly abundant and rapidly evolving satellite sequence SatA is specific to Paphiopedilum subgenus Parvisepalum. SatA and rDNA chromosomal distributions are characteristic of species, and comparisons between species reveal that the distribution patterns generate a strong phylogenetic signal. We also conclude that the ancestral chromosome number of subgenus Parvisepalum and indeed of all Paphiopedilum could be either 2n = 26 or 28, if P. vietnamense is sister to all species in the subgenus as suggested by the ITS data. Electronic supplementary material The online version of this article (10.1186/s12864-018-4956-7) contains supplementary material, which is available to authorized users.

Background and Aims Although abscisic acid (ABA) is commonly recognized as a primary cause of seed dormancy, there is a lack of information on the role of ABA during orchid seed development. In order to address this issue, the localization and quantification of ABA were determined in developing seeds of Cypripedium formosanum. Methods The endogenous ABA profile of seeds was measured by enzyme-linked immunosorbent assay (ELISA). Temporal and spatial distributions of ABA in developing seeds were visualized by immunohistochemical staining with monoclonal ABA antibodies. Fluoridone was applied to test the causal relationship between ABA content and seed germinability. Key Results ABA content was low at the proembryo stage, then increased rapidly from 120 to 150 days after pollination (DAP), accompanied by a progressive decrease in water content and seed germination. Immunofluorescence signals indicated an increase in fluorescence over time from the proembryo stage to seed maturation. From immunogold labelling, gold particles could be seen within the cytoplasm of embryo-proper cells during the early stages of seed development. As seeds approached maturity, increased localization of gold particles was observed in the periplasmic space, the plasmalemma between embryo-proper cells, the surface wall of the embryo proper, and the inner walls of inner seed-coat cells. At maturity, gold particles were found mainly in the apoplast, such as the surface wall of the embryo proper, and the shrivelled inner and outer seed coats. Injection of fluoridone into capsules resulted in enhanced germination of mature seeds. Conclusions The results indicate that ABA is the key inhibitor of germination in C. formosanum. The distinct accumulation pattern of ABA suggests that it is synthesized in the cytosol of embryo cells during the early stages of seed development, and then exported to the apoplastic region of the cells for subsequent regulatory processes as seeds approach maturity.

The chromomethylase (CMT) protein family is unique to plants and controls non-CpG methylation. Here, we investigated the developmental expression of CMT3-2 in Nicotiana benthamiana (NbCMT3-2) and its significance by analyzing plants with silenced NbCMT3-2 and leaf tissues transiently expressing the N-terminal polypeptide. Alignment of the NbCMT3-2 amino acid sequence with that of other plant CMT3s showed a specific N-terminal extension required for nuclear localization. Transient expression of the N-terminal polypeptide in N. benthamiana resulted in chlorotic lesions. NbCMT3-2 was expressed mainly in proliferating tissues such as the shoot apex and developing leaves. We generated transgenic N. benthamiana harboring a fusion reporter construct linking the NbCMT3-2 promoter region and the β-glucuronidase (GUS) reporter (pNbCMT3-2::GUS) to analyze the tissue-specific expression of NbCMT3-2. NbCMT3-2 was expressed in the shoot and root apical meristem and leaf primordia in young seedlings and highly expressed in developing leaves and ovary as well as lateral buds in mature plants. Virus-induced gene silencing used to knock down the expression of NbCMT3 or NbCMT3-2 or both led to partial loss of genomic DNA methylation. Plants with suppressed NbCMT3 expression grew and developed normally, whereas leaves with NbCMT3-2 knockdown showed mild curling as compared with controls. Silencing NbCMT3/3-2 severely interfered with leaf development and directly or indirectly affected the expression of genes involved in jasmonate homeostasis. The differential roles of NbCMT3 and NbCMT3-2 were investigated and compared. We reveal the expression patterns of NbCMT3-2 in proliferating tissues. NbCMT3-2 may play an essential role in leaf development by modulating jasmonate pathways.

The medicinal effects and techniques for cultivating Anoectochilus formosanus are well-documented, but little is known about the mycorrhizal fungi associated with A. formosanus. Rhizoctonia (Thanatephorus) anastomosis group 6 (AG-6) was the most common species isolated from fungal pelotons in native A. formosanus and represented 67 % of the sample. Rhizoctonia (Ceratobasidium) AG-G, P, and R were also isolated and represent the first occurrence in the Orchidaceae. Isolates of AG-6, AG-R, and AG-P in clade I increased seed germination 44–91 % and promoted protocorm growth from phases III to VI compared to asymbiotic treatments and isolates of AG-G in clade II and Tulasnella species in clade III. All isolates in clades I to III formed fungal pelotons in tissue-cultured seedlings of A. formosanus, which exhibited significantly greater growth than nonmycorrhizal seedlings. An analysis of the relative effect of treatment (\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {\widehat{p}}_i $$\end{document}p^i) showed that the low level of colonization (\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {\widehat{p}}_i = 0.30\hbox{--} 0.47 $$\end{document}p^i=0.30–0.47) by isolates in clade I resulted in a significant increase in seedling growth compared to isolates in clades II (0.63–0.82) and III (0.63–0.75). There was also a negative correlation (r = −0.8801) with fresh plant weight and fungal colonization. Our results suggest that isolates in clade I may represent an important group associated with native populations of A. formosanus and can vary in their ability to establish a symbiotic association with A. formosanus. The results presented here are potentially useful for advancing research on the medicinal properties, production, and conservation of A. formosanus in diverse ecosystems. Electronic supplementary material The online version of this article (doi:10.1007/s00572-014-0616-1) contains supplementary material, which is available to authorized users.

Additional file 1: Table S1. Voucher and GenBank accession number of plant materials used in this study. An asterisk (*) denotes the sequences of species that were obtained from GenBank.

Cypripedium macranthos is a lady's slipper orchid with high horticultural value. We document a reproducible protocol for asymbiotic seed germination based on a defined time frame. The optimum germination percentage was obtained from immature seeds collected at 6 weeks after pollination (WAP). At this time, the embryo reached the early globular stage. As seeds matured, the germination percentage declined sharply. Histological observation revealed that two distinct layers of seed coats enveloped the embryos tightly at maturity. The histochemical staining by Nile red and TBO indicated the presence of hydrophobic substance and phenolic compounds (e.g. lignin and cuticular material) in the seed coats. These features reflected the strong hydrophobic nature of seed coat that may cause the seed dormancy. Among the surveyed media, the modified Harvais medium was the optimum for germination. Among the surveyed organic supplements, potato homogenate (50 g l −1 ) or banana homogenate (25 or 50 g l −1 ) was suitable for the growth of seedlings.