295 results on '"Yuanyuan Xia"'
Search Results
2. The predictive value of peripheral blood CD4 cells ATP concentration for immune-related adverse events in advanced non-small cell lung cancer patients
- Author
-
Kailian Hou, Weipeng Ye, Qunfeng Huang, Weiyi Li, Zhiqiong Tan, Na tao, Dongheng yang, Haoxin Lin, Zihao Deng, Yuanyuan Xia, and Guifang Yu
- Subjects
Non-small cell lung cancer ,CD4 cells ,Adenosine triphosphate ,Immune-related adverse events ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Objective Lung cancer with the highest incidence and mortality in the world. Immune checkpoint inhibitors (ICIs), can bring long-term survival benefits to patients, but also can bring immune-related adverse events (irAEs) in some patients during therapy. Therefore, the aim of this study was to investigate the predictive effect of peripheral blood WBC, NLR, sATPCD4 and nATPCD4 on irAEs in advanced non-small cell lung cancer (NSCLC). Methods Clinical data of 112 patients with advanced NSCLC who were treated with PD -1/PD -L1 inhibitor in the Fifth Affiliated Hospital of Guangzhou Medical University from December 15, 2019 to April 30, 2023 were retrospectively analyzed. These patients were divided into the irAEs group (n = 27) and non-irAEs group (n = 85). The clinical data of the two groups were compared. Receiver operating characteristic (ROC) curves were drawn to determine the threshold value of baseline peripheral blood parameters to predict the occurrence of irAEs. Multivariate logistic regression analysis was used to explore the relationship between peripheral blood markers and the incidence of irAEs. Results The patient characteristics have no significant difference between irAEs and non-irAEs group. But the baseline peripheral blood WBC, sATPCD4 and nATPCD4 of patients in the irAEs group were higher than those in the non-irAEs group (p
- Published
- 2024
- Full Text
- View/download PDF
3. Experimental Study on the Universal Design of Signage Size and Brightness Contrast for Low Vision Individuals
- Author
-
Erke Zhang, Wei Zhao, Zihan Mei, Zhexi Yang, Fei Chen, Yuanyuan Xia, and Yihan Wang
- Subjects
brightness contrast ,low vision individuals ,signage size ,universal design ,Building construction ,TH1-9745 - Abstract
Signage is an important medium for individuals to obtain spatial environmental information conveniently and accurately. However, most previous studies focus on signage design for individuals with normal vision, neglecting the specific requirements of those with low vision. Therefore, these signage designs lacking universality restrict the activities of individuals with low vision in public spaces and increase their risks. This study aims to conduct quantitative research on signage size and brightness contrast for low vision individuals. A virtual simulation experimental platform investigated how individuals interpret and react to signage. Two sets of experiments were carried out in Tianjin Key Laboratory of Healthy Habitat and Smart Technology to evaluate the effects of signage size and brightness contrast on response time and accuracy among a total of 139 participants. The results showed that the signage size should be at least 7% of the reading distance to meet the wayfinding needs of low vision individuals. The impact of contrast on wayfinding was strongly dependent on signage size. This research provides valuable insights into the design of signage for low vision individuals.
- Published
- 2024
- Full Text
- View/download PDF
4. Application of non-invasive prenatal testing to 91,280 spontaneous pregnancies and 3477 pregnancies conceived by in vitro fertilization
- Author
-
Rong Wei, Jingran Li, Yuanyuan Xia, Chaohong Wang, Xinran Lu, Yuqin Fang, and Jiansheng Zhu
- Subjects
Non-invasive prenatal testing (NIPT) ,Assisted reproductive technology (ART) ,Cell-free DNA ,In vitro fertilization (IVF) ,Sex chromosome aneuploidy (SCA) ,Chromosomal aneuploidies ,Genetics ,QH426-470 - Abstract
Abstract Background Many clinical studies based on spontaneous pregnancies (SPs) have demonstrated the superiority of non-invasive prenatal testing (NIPT), and the question of whether this technology is suitable for offspring conceived by assisted reproductive technology has attracted attention. This study aimed to evaluate the application value of NIPT in screening for trisomy (T)21, T18, T13 and sex chromosome aneuploidy (SCA) in pregnant women who conceived by in vitro fertilization (IVF). Results In total, there were 804 high-risk cases [0.88% (804/91280), singleton = 795, twin = 9] in the SP group. Among the 558 invasive prenatal diagnosis (IPD) cases (singleton = 556, twin = 2), 343 (singleton = 342, twin = 1) were true positive, including 213 cases of T21, 28 of T18, 5 of T13 and 97 (singleton = 96, twin = 1) of SCA. The positive predictive values (PPVs) of T21, T18, T13, SCA and T21/T18/T13 combined in singleton pregnancy were 89.12% (213/239), 51.85% (28/54), 21.74% (5/23), 40.00% (96/240), and 77.85% (246/316), respectively, and the PPV of SCA in twin pregnancy was 100.00%. In the IVF group, IPD was performed in 19 (singleton = 16, twin = 3) of the 27 high-risk cases [0.78% (27/3477), singleton = 16, twin = 3], of which 9 (singleton = 8, twin = 1) were true positive, including 5 cases (singleton = 4, twin = 1) of T21 and 4 of SCA. The PPVs of singleton T21, SCA and T21/T18/T13 combined were 66.67% (4/6), 50.00% (4/8) and 57.14% (4/7), respectively, and the PPV of twin T21 was 100.00% (1/1). There were no significant differences in PPV among T21, SCA and T21/T18/T13 combined in singletons between the groups (89.12% vs. 66.67%, p = 0.09; 40.00% vs. 50.00%, p = 0.57; 77.85% vs. 57.14%, p = 0.20). The sensitivity and specificity were higher for singleton and twin pregnancies in the two groups. Based on follow-up results, 1 case of false negative T21 was found in the singleton SP group. Additionally, the mean foetal fraction (FF) of the IVF group was lower than that of the SP group (11.23% vs. 10.51%, p
- Published
- 2023
- Full Text
- View/download PDF
5. Evaluation of CD4+ T Lymphocyte Counts to Predict Survival of ICU Patients with Sepsis Using Sepsis-3 Criteria: A Prospective Cohort Study
- Author
-
Guoge Huang, Xusheng Li, Chunmei Zhang, Haizhong Li, Mengling Jian, Chunyang Huang, Yingqin Zhang, Luhua Xian, Hongke Zeng, Yuanyuan Xia, and Wenqiang Jiang
- Subjects
Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Background. Sepsis remains a major health condition with a high mortality rate that may be related to immunosuppression. T lymphocyte subsets may reflect the immune function of sepsis patients. The purpose of this study was to investigate the predictive value of CD4+ T lymphocyte counts of ICU patients for their short-term prognosis. Methods. We conducted a prospective, observational cohort study in a general ICU and enrolled patients with sepsis using the Sepsis-3 criteria. Peripheral blood samples were collected within 24 hours of enrollment or measurement of blood cell analysis and biomarkers of CD4+ T lymphocytes and CD8+ T lymphocytes. Severity was classified by the Acute Physiology and Chronic Health Evaluation II and Sequential Organ Failure Assessment (SOFA) scores. The primary outcome was 28-day mortality. Results. A total of 100 patients with sepsis were enrolled and analyzed. CD4+ T lymphocyte counts gradually decreased based on 28-day mortality (p
- Published
- 2024
- Full Text
- View/download PDF
6. A Patient Similarity Network (CHDmap) to Predict Outcomes After Congenital Heart Surgery: Development and Validation Study
- Author
-
Haomin Li, Mengying Zhou, Yuhan Sun, Jian Yang, Xian Zeng, Yunxiang Qiu, Yuanyuan Xia, Zhijie Zheng, Jin Yu, Yuqing Feng, Zhuo Shi, Ting Huang, Linhua Tan, Ru Lin, Jianhua Li, Xiangming Fan, Jingjing Ye, Huilong Duan, Shanshan Shi, and Qiang Shu
- Subjects
Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract BackgroundAlthough evidence-based medicine proposes personalized care that considers the best evidence, it still fails to address personal treatment in many real clinical scenarios where the complexity of the situation makes none of the available evidence applicable. “Medicine-based evidence” (MBE), in which big data and machine learning techniques are embraced to derive treatment responses from appropriately matched patients in real-world clinical practice, was proposed. However, many challenges remain in translating this conceptual framework into practice. ObjectiveThis study aimed to technically translate the MBE conceptual framework into practice and evaluate its performance in providing general decision support services for outcomes after congenital heart disease (CHD) surgery. MethodsData from 4774 CHD surgeries were collected. A total of 66 indicators and all diagnoses were extracted from each echocardiographic report using natural language processing technology. Combined with some basic clinical and surgical information, the distances between each patient were measured by a series of calculation formulas. Inspired by structure-mapping theory, the fusion of distances between different dimensions can be modulated by clinical experts. In addition to supporting direct analogical reasoning, a machine learning model can be constructed based on similar patients to provide personalized prediction. A user-operable patient similarity network (PSN) of CHD called CHDmap ResultsUsing 256 CHD cases, CHDmap was evaluated on 2 different types of postoperative prognostic prediction tasks: a binary classification task to predict postoperative complications and a multiple classification task to predict mechanical ventilation duration. A simple poll of the k ConclusionsWithout individual optimization, CHDmap demonstrates competitive performance compared to clinical experts. In addition, CHDmap has the advantage of enabling clinicians to use their superior cognitive abilities in conjunction with it to make decisions that are sometimes even superior to those made using artificial intelligence models. The MBE approach can be embraced in clinical practice, and its full potential can be realized.
- Published
- 2024
- Full Text
- View/download PDF
7. Unlocking Brilliance: A Smart Approach to Icon Colour Design Inspired by Universal Design Principles
- Author
-
Erke Zhang, Zhexi Yang, Wei Zhao, Zihan Mei, Yuanyuan Xia, and Fei Chen
- Subjects
architectural signature system ,computer-aided design ,colour scheme ,icon design ,universal design ,Building construction ,TH1-9745 - Abstract
Icons are integral to the signature systems within architectural spaces, serving pivotal roles through human–environment interactions. However, previous icon designs often exhibited a considerable randomness and neglected the needs of visually impaired individuals. To address these issues and to overcome the limitations of the computer-aided design methods, such as most of them focusing only on text design which are not compatible with icons, this study presents an intelligent assistance method named “Universal Colour” for icon colour design based on universal design principles. Such a system enables the rapid generation of icon colour schemes and supports visual and quantitative filtering and comparison during the decision-making process for colour scheme optimization. To assess its usability, fifty-two participants conducted icon colour design experiments using this system, resulting in 87% of the design schemes meeting the universality requirements. The results have demonstrated that Universal Colour has the potential to significantly enhance efficiency and cognitive aspects within the decision-making process for users, regardless of their proficiency in icon design, thereby facilitating the generation of universal icon colour schemes in architectural design.
- Published
- 2024
- Full Text
- View/download PDF
8. Efficient production of cembratriene-ol in Escherichia coli via systematic optimization
- Author
-
Haiquan Yang, Kunjie Zhang, Wei Shen, Lei Chen, Yuanyuan Xia, Wei Zou, Yu Cao, and Xianzhong Chen
- Subjects
Escherichia coli ,DXP pathway ,Cembratriene-ol ,Key enzymes ,Systematicoptimization ,Microbiology ,QR1-502 - Abstract
Abstract Background The tobacco leaf–derived cembratriene-ol exhibits anti-insect effects, but its content in plants is scarce. Cembratriene-ol is difficult and inefficiently chemically synthesised due to its complex structure. Moreover, the titer of reported recombinant hosts producing cembratriene-ol was low and cannot be applied to industrial production. Results In this study, Pantoea ananatis geranylgeranyl diphosphate synthase (CrtE) and Nicotiana tabacum cembratriene-ol synthase (CBTS) were heterologously expressed to synthsize the cembratriene-ol in Escherichia coli. Overexpression of cbts*, the 1-deoxy-d-xylulose 5-phosphate synthase gene dxs, and isopentenyl diphosphate isomerase gene idi promoted the production of cembratriene-ol. The cembratriene-ol titer was 1.53-folds higher than that of E. coli Z17 due to the systematic regulation of ggpps, cbts*, dxs, and idi expression. The production of cembratriene-ol was boosted via the overexpression of genes ispA, ispD, and ispF. The production level of cembratriene-ol in the optimal medium at 72 h was 8.55-folds higher than that before fermentation optimisation. The cembratriene-ol titer in the 15-L fermenter reached 371.2 mg L− 1, which was the highest titer reported. Conclusion In this study, the production of cembratriene-ol in E. coli was significantly enhanced via systematic optimization. It was suggested that the recombinant E. coli producing cembratriene-ol constructed in this study has potential for industrial production and applications.
- Published
- 2023
- Full Text
- View/download PDF
9. Policy evolution of personnel management in Chinese educational institutions: A comprehensive policy circle analysis
- Author
-
Yuanyuan Xia, Dongxu Qu, Nataliya Stoyanets, and Hejun Zhao
- Subjects
China ,education quality ,management process ,personnel system ,policy reform ,professional development ,Business ,HF5001-6182 - Abstract
The reform of education personnel management policies has been carried out progressively to ensure the achievement of educational goals. A systematic analysis of the personnel management policy circle, including policy design, content, and implementation, is crucial to improving the accuracy and effectiveness of such policies. Through a comprehensive review of policy evolution, this study aims to systematize the design and content of policies on personnel management in educational institutions in China. It was determined that personnel management is increasingly concerned with the efficiency and effectiveness of goal achievement, policy design, system reform, and mixed-used management methods. A questionnaire survey was conducted among 420 respondents in 25 preschool institutions in five cities of Henan province in China. A total of 362 questionnaires were deemed valid out of 397 retrieved, including 24 from principals and 338 from teachers. The statistical analysis results identified the problems in policy implementation, including the laxly enforced teacher qualification system, inadequate teacher professional development, poorly implemented training policies, unattractive salaries and benefits, and the undesirable assessment system. For example, 5.89% of the respondents still need teaching qualification certificates. Only 1.1% of the respondents had senior titles. 2.76% of the respondents are still paid less than the minimum standard. In response to the situation, this study suggests effective countermeasures for educational administrative authorities and institutions. The findings could provide a reference for further optimization and development of personnel management policies. AcknowledgmentsThis study is supported by Sumy National Agrarian University in Ukraine and the Talent Special Support Program for Doctoral Studies of Henan Institute of Science and Technology in China.
- Published
- 2022
- Full Text
- View/download PDF
10. Seismic performance analysis and control method of composite coupled shear wall with steel plate-fiber reinforced concrete coupling beams
- Author
-
Yangyang Xia, Chenming Shen, Yuanyuan Xia, Haizeng Yang, Youchun Wang, and Jianbo Tian
- Subjects
steel plate-fiber reinforced concrete coupling beam ,composite coupled shear wall ,coupling ratio ,seismic performance ,control method ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Chemical technology ,TP1-1185 - Abstract
This paper based on the study of steel plate-fiber reinforced concrete coupling beam components, designs a basic model of composite coupled shear walls with steel plate-fiber reinforced concrete coupling beams. The seismic performance of this model was numerically simulated using the ABAQUS finite element software, analyzing the stress distribution of various parts and the development pattern of plastic hinges in the structure. It also examines how factors such as axial compression ratio, coupling beam cross-sectional dimensions, single-sided wall limb aspect ratio, and total floor height affect the seismic performance of this type of coupled shear wall, providing a reasonable range for axial compression ratios and coupling ratios for composite coupled shear walls with steel plate-fiber reinforced concrete coupling beams. Based on the obtained reasonable axial compression ratio and coupling ratio, and using the analytical solution of the continuum method, a method for controlling the seismic performance of coupled shear wall structures was proposed. Results show that the composite coupled shear walls with steel plate-fiber reinforced concrete coupling beams exhibit high load-bearing capacity and lateral stiffness under inverted triangular horizontal loads, with good displacement ductility and strong energy dissipation capability, making it an excellent seismic performance coupled shear wall system. As the axial compression ratio increases, the displacement corresponding to the yield point and peak point of the structure gradually decreases, and the displacement ductility coefficient shows a trend of first increasing and then decreasing; it is recommended that when designing steel plate-fiber reinforced concrete coupling beam-coupled shear walls, the axial compression ratio should not exceed 0.3. Numerical analysis of coupling ratio-related parameters indicates that in high-intensity seismic design areas, the range of coupling ratios should be between 45% and 60%.
- Published
- 2024
- Full Text
- View/download PDF
11. Experimental Study on the Bonding Performance of FFRP Reinforced Timber Interface
- Author
-
Yuanyuan Xia, Qiang Du, Xinyue Zhang, Yangyang Xia, Guijun Xian, Lin Mu, and Ningjun Du
- Subjects
flax fiber reinforced polymer ,timber structure ,failure mode ,ultimate loading capacity ,interface performance ,bond-slip relationship ,Science ,Textile bleaching, dyeing, printing, etc. ,TP890-933 - Abstract
Although there are lots of researches about the application of FRP composites on the external bonding and reinforcement of timber structures, they are mostly aimed at Carbon FRP, which has a large difference in mechanical properties and inconsistent deformation with timber. Meanwhile, research about the interface between timber and Flax Fiber Reinforced Polymer (FFRP) with similar properties with timber is limited; hence, relevant models have not been established yet. Similar to linear elastic FRP confined timber structure, the failure of FFRP-timber structure interface is a process in which the interfacial stress is gradually transferred from the loaded end to the free end, and the interfacial stress transfer area, that is an effective bond length of the FFRP-timber interface. In order to study the interfacial stress transfer characteristics between FFRP and timber structure, based on the existing CFRP-timber structure interface bonding theory and mechanism, a single lap shear test is used to conduct a systematic study on bonding length and width are studied to optimized the application of FFRP. The bond-slip behavior is studied and fitted to provide theory support for the application of FFRP in the restoration of ancient timber structures.
- Published
- 2023
- Full Text
- View/download PDF
12. Engineering the oleaginous yeast Candida tropicalis for α-humulene overproduction
- Author
-
Lihua Zhang, Haiquan Yang, Yuanyuan Xia, Wei Shen, Liming Liu, Qi Li, and Xianzhong Chen
- Subjects
Candida tropicalis ,α-Humulene ,Rate-limiting enzymes ,Metabolic engineering ,Mevalonate pathway ,Biotechnology ,TP248.13-248.65 ,Fuel ,TP315-360 - Abstract
Abstract Background α-Humulene is a plant-derived monocyclic sesquiterpenoid with multiple pharmacological activities, and far-reaching potential for the development of new drugs. Currently, the production of α-humulene is typically achieved via plant extraction, which is not sustainable and limited by low yields. The oleaginous yeast Candida tropicalis has recently emerged as a valuable host for producing high-value-added chemicals. However, the potential of C. tropicalis for terpenoid production has not been exploited. Results In this study, C. tropicalis was engineered for de novo synthesis of α-humulene from glucose. To improve α-humulene production, the codon-optimised α-humulene synthase gene and the entire endogenous farnesyl diphosphate synthesis pathway were co-overexpressed. Furthermore, bottlenecks in the α-humulene synthase pathway were identified and relieved by overexpressing α-humulene synthase, acetoacetyl-CoA thiolase and NADH-dependent HMG-CoA reductase. Combined with fermentation medium optimisation, the engineered strain produced 195.31 mg/L of α-humulene in shake flasks and 4115.42 mg/L in a bioreactor through fed-batch fermentation, a 253- and 5345-fold increase over the initial production, respectively. Conclusions This study demonstrates the potential of C. tropicalis for α-humulene production, and presents a platform for the biosynthesis of other terpenoids.
- Published
- 2022
- Full Text
- View/download PDF
13. Microarray profile analysis identifies ETS1 as potential biomarker regulated by miR-23b and modulates TCF4 in gastric cancer
- Author
-
Dinglian Mei, Yalong Qi, Yuanyuan Xia, Jun Ma, Hao Hu, Jun Ai, Liqiang Chen, Ning Wu, and Daixiang Liao
- Subjects
Gastric carcinoma ,miRNAs ,Transcription factors ,Differentially expressed genes ,Bioinformatics analysis ,Immunity ,Surgery ,RD1-811 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Gastric cancer (GC), a common malignancy of the human digestive system, represents the second leading cause of cancer-related deaths worldwide. Early detection of GC has a significant impact on clinical outcomes. The aim of this study was to identify potential GC biomarkers. Methods In this study, we conducted a multi-step analysis of expression profiles in GC clinical samples downloaded from TCGA database to identify differentially expressed miRNAs (DEMs) and differentially expressed mRNAs (DEGs). Potential prognostic biomarkers from the available DEMs were then established using the Cox regression method. Gene ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed to investigate the biological role of the predicted target genes of the miRNA biomarkers. Then, the prognostic DEM-mediated regulatory network was constructed based on transcription factor (TF)–miRNA–target interaction. Subsequently, the consensus genes were further determined based on the overlap between DEGs and these target genes of DEMs. Besides, expression profile, co-expression analysis, immunity, and prognostic values of these prognostic genes were also investigated to further explore the roles in the mechanism of GC tumorigenesis. Results We got five miRNAs, including miR-23b, miR-100, miR-143, miR-145, and miR-409, which are associated with the overall survival of GC patients. Subsequently, enrichment analysis of the target genes of the miRNA biomarkers shown that the GO biological process terms were mainly enriched in mRNA catabolic process, nuclear chromatin, and RNA binding. In addition, the KEGG pathways were significantly enriched in fatty acid metabolism, extracellular matrix (ECM) receptor interaction, and proteoglycans in cancer pathways. The transcriptional regulatory network consisting of 68 TFs, 4 DEMs, and 58 targets was constructed based on the interaction of TFs, miRNAs, and targets. The downstream gene ETS1 of miR-23b and TCF4 regulated by ETS1 were obtained by the regulatory network construction and co-expression analysis. High expression of ETS1 and TCF4 indicated poor prognosis in GC patients, particularly in the advanced stages. The expression of ETS1 and TCF4 was correlated with CD4+ T cells, CD8+ T cells, and B cells. Conclusions miR-23b, ETS1, and TCF4 were identified as the prognostic biomarkers. ETS1 and TCF4 had potential immune function in GC, which provided a theoretical basis for molecular-targeted combined immunotherapy in the future.
- Published
- 2021
- Full Text
- View/download PDF
14. Long noncoding RNA SGO1-AS1 inactivates TGFβ signaling by facilitating TGFB1/2 mRNA decay and inhibits gastric carcinoma metastasis
- Author
-
Donglan Huang, Ke Zhang, Wenying Zheng, Ruixin Zhang, Jiale Chen, Nan Du, Yuanyuan Xia, Yan Long, Yixue Gu, Jianhua Xu, and Min Deng
- Subjects
Gastric carcinoma ,Metastasis ,lncRNA ,SGO1-AS1 ,TGFβ ,ZEB1 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Although thousands of long noncoding RNAs (lncRNAs) have been annotated, only a few lncRNAs have been characterized functionally. In this study, we aimed to identify novel lncRNAs involved in the progression of gastric carcinoma (GC) and explore their regulatory mechanisms and clinical significance in GC. Methods A lncRNA expression microarray was used to identify differential lncRNA expression profiles between paired GCs and adjacent normal mucosal tissues. Using the above method, the lncRNA SGO1-AS1 was selected for further study. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) and in situ hybridization (ISH) were performed to detect SGO1-AS1 expression in GC tissues. Gain-of-function and loss-of-function analyses were performed to investigate the functions of SGO1-AS1 and its upstream and downstream regulatory mechanisms in vitro and in vivo. Results SGO1-AS1 was downregulated in gastric carcinoma tissues compared to adjacent normal tissues, and its downregulation was positively correlated with advanced clinical stage, metastasis status and poor patient prognosis. The functional experiments revealed that SGO1-AS1 inhibited GC cell invasion and metastasis in vitro and in vivo. Mechanistically, SGO1-AS1 facilitated TGFB1/2 mRNA decay by competitively binding the PTBP1 protein, resulting in reduced TGFβ production and, thus, preventing the epithelial-to-mesenchymal transition (EMT) and metastasis. In addition, in turn, TGFβ inhibited SGO1-AS1 transcription by inducing ZEB1. Thus, SGO1-AS1 and TGFβ form a double-negative feedback loop via ZEB1 to regulate the EMT and metastasis. Conclusions SGO1-AS1 functions as an endogenous inhibitor of the TGFβ pathway and suppresses gastric carcinoma metastasis, indicating a novel potential target for GC treatment.
- Published
- 2021
- Full Text
- View/download PDF
15. Development of a gRNA Expression and Processing Platform for Efficient CRISPR-Cas9-Based Gene Editing and Gene Silencing in Candida tropicalis
- Author
-
Yujie Li, Lihua Zhang, Haiquan Yang, Yuanyuan Xia, Liming Liu, Xianzhong Chen, and Wei Shen
- Subjects
Candida tropicalis ,CRISPR interference system ,RNA Pol III promoter ,genome editing ,gRNA expression element ,Microbiology ,QR1-502 - Abstract
ABSTRACT Candida tropicalis, a nonmodel diploid microbe, has been applied in industry as a chassis cell. Metabolic engineering of C. tropicalis is challenging due to a lack of gene editing and regulation tools. Here, we report a tRNA:guide RNA (gRNA) platform for boosting gene editing and silencing efficiency in C. tropicalis. As the endogenous tRNA-processing system enables autocleavage for producing a large number of mature gRNAs, a tRNAGly sequence from the genome of C. tropicalis ATCC 20336 was selected for constructing the tRNA:gRNA platform. In the CRISPR-Cas9 system, the tRNA:gRNA platform proved to be efficient in single-gene and multi-gene editing. Furthermore, based on the tRNA:gRNA platform, a CRISPR interference (CRISPRi) system was developed to construct an efficient dCas9-mediated gene expression regulation system for C. tropicalis. The CRISPRi system was employed to regulate the expression of the exogenous gene GFP3 (green fluorescent protein) and the endogenous gene ADE2 (phosphoribosylaminoimidazole carboxylase). Different regions of GFP3 and ADE2 were targeted with the gRNAs processed by the tRNAGly, and the transcription levels of GFP3 and ADE2 were successfully downregulated to 23.9% ± 4.1% and 38.0% ± 7.4%, respectively. The effects of the target regions on gene regulation were also investigated. Additionally, the regulation system was applied to silence ERG9 (squalene synthase) to enhance β-carotene biosynthesis in a metabolically modified C. tropicalis strain. The results suggest that the endogenous tRNAGly and the CRISPRi system have great potential for metabolic engineering of C. tropicalis. IMPORTANCE In the nonmodel yeast Candida tropicalis, a lack of available RNA polymerase type III (Pol III) promoters hindered the development of guide RNA (gRNA) expression platforms for the establishment of CRISPR-Cas-mediated genome editing and silencing strategies. Here, a tRNA:gRNA platform was constructed. We show that this platform allows efficient and precise expression and processing of different gRNAs from a single polycistronic gene capable of mediating multi-gene editing in combination with CRISPR-Cas9. Furthermore, in combination with dCas9, the tRNA:gRNA platform was efficiently used for silencing of exogenous and endogenous genes, representing the first CRISPR interference tool (CRISPRi) in C. tropicalis. Importantly, the established CRISPRi-tRNA:gRNA tool was also used for metabolic engineering by regulating β-carotene biosynthesis in C. tropicalis. The results suggest that the tRNA:gRNA platform and the CRISPRi system will further advance the application of the CRISPR-Cas-based editing and CRISPRi systems for metabolic engineering in C. tropicalis.
- Published
- 2022
- Full Text
- View/download PDF
16. Analysis of female drivers’ ECG characteristics within the context of connected vehicles
- Author
-
Xiaoyuan Wang, Yongqing Guo, Chen Chen, Yuanyuan Xia, and Yaqi Liu
- Subjects
driving anxiety ,driving experiment ,ecg signal characteristics ,female driver ,paired t- test ,Motor vehicles. Aeronautics. Astronautics ,TL1-4050 - Abstract
Purpose – This study aims to analyze the differences of electrocardiograph (ECG) characteristics for female drivers in calm and anxious states during driving. Design/methodology/approach – The authors used various materials (e.g. visual materials, auditory materials and olfactory materials) to induce drivers’ mood states (calm and anxious), and then conducted the real driving experiments and driving simulations to collect driver’s ECG signal dynamic data. Physiological changes in ECG during the stimulus process were recorded using PSYLAB software. The paired T-test analysis was conducted to determine if there is a significant difference in driver’s ECG characteristics between calm and anxious states during driving. Findings – The results show significant differences in the characteristic parameters of female driver’s ECG signals, including (average heart rate), (atrioventricular interval), (percentage of NN intervals > 50ms), (R wave average peak), (Root mean square of successive), (Q wave average peak) and ( S wave average peak), in time domain, frequency domain and waveform in emotional states of calmness and anxiety. Practical implications – Findings of this work show that ECG can be used to identify driver’s anxious and calm states during driving. It can be used for the development of personalized driver assistance system and driver warning system. Originality/value – Only a few attempts have been made on the influence of human emotions on physiological signals in the transportation field. Hence, there is a need for transport scholars to begin to identify driver’s ECG characteristics under different emotional states. This study will analyze the differences of ECG characteristics for female drivers in calm and anxious states during driving to provide a theoretical basis for developing the intelligent and connected vehicles.
- Published
- 2020
- Full Text
- View/download PDF
17. Construct ceRNA Network and Risk Model of Breast Cancer Using Machine Learning Methods under the Mechanism of Cuproptosis
- Author
-
Jianzhi Deng, Fei Fu, Fengming Zhang, Yuanyuan Xia, and Yuehan Zhou
- Subjects
cuproptosis ,breast cancer ,PRNP ,ceRNA ,risk model ,machine learning ,Medicine (General) ,R5-920 - Abstract
Breast cancer (BRCA) has an undesirable prognosis and is the second most common cancer among women after lung cancer. A novel mechanism of programmed cell death called cuproptosis is linked to the development and spread of tumor cells. However, the function of cuproptosis in BRCA remains unknown. To this date, no studies have used machine learning methods to screen for characteristic genes to explore the role of cuproptosis-related genes (CRGs) in breast cancer. Therefore, 14 cuproptosis-related characteristic genes (CRCGs) were discovered by the feature selection of 39 differentially expressed CRGs using the three machine learning methods LASSO, SVM-RFE, and random forest. Through the PPI network and immune infiltration analysis, we found that PRNP was the key CRCG. The miRTarBase, TargetScan, and miRDB databases were then used to identify hsa-miR-192-5p and hsa-miR-215-5p as the upstream miRNA of PRNP, and the upstream lncRNA, CARMN, was identified by the StarBase database. Thus, the mRNA PRNP/miRNA hsa-miR-192-5p and hsa-miR-215-5p/lncRNA CARMN ceRNA network was constructed. This ceRNA network, which has not been studied before, is extremely innovative. Furthermore, four cuproptosis-related lncRNAs (CRLs) were screened in TCGA-BRCA by univariate Cox, LASSO, and multivariate Cox regression analysis. The risk model was constructed by using these four CRLs, and the risk score = C9orf163 * (1.8365) + PHC2-AS1 * (−2.2985) + AC087741.1 * (−0.9504) + AL109824.1 * (0.6016). The ROC curve and C-index demonstrated the superior predictive capacity of the risk model, and the ROC curve demonstrated that the AUC of 1-, 3-, and 5-year OS in all samples was 0.721, 0.695, and 0.633, respectively. Finally, 50 prospective sensitive medicines were screened with the pRRophetic R package, among which 17-AAG may be a therapeutic agent for high-risk patients, while the other 49 medicines may be suitable for the treatment of low-risk patients. In conclusion, our study constructs a new ceRNA network and a novel risk model, which offer a theoretical foundation for the treatment of BRCA and will aid in improving the prognosis of BRCA.
- Published
- 2023
- Full Text
- View/download PDF
18. Recent Advances and Promises in Nitrile Hydratase: From Mechanism to Industrial Applications
- Author
-
Zhongyi Cheng, Yuanyuan Xia, and Zhemin Zhou
- Subjects
Nitrile hydratase ,natural distribution ,gene types ,catalytic mechanism ,post-translational modification ,thermostability ,Biotechnology ,TP248.13-248.65 - Abstract
Nitrile hydratase (NHase, EC 4.2.1.84) is one type of metalloenzyme participating in the biotransformation of nitriles into amides. Given its catalytic specificity in amide production and eco-friendliness, NHase has overwhelmed its chemical counterpart during the past few decades. However, unclear catalytic mechanism, low thermostablity, and narrow substrate specificity limit the further application of NHase. During the past few years, numerous studies on the theoretical and industrial aspects of NHase have advanced the development of this green catalyst. This review critically focuses on NHase research from recent years, including the natural distribution, gene types, posttranslational modifications, expression, proposed catalytic mechanism, biochemical properties, and potential applications of NHase. The developments of NHase described here are not only useful for further application of NHase, but also beneficial for the development of the fields of biocatalysis and biotransformation.
- Published
- 2020
- Full Text
- View/download PDF
19. Proactive Caching With Distributed Deep Reinforcement Learning in 6G Cloud-Edge Collaboration Computing.
- Author
-
Changmao Wu, Zhengwei Xu 0001, Xiaoming He, Qi Lou, Yuanyuan Xia, and Shuman Huang
- Published
- 2024
- Full Text
- View/download PDF
20. Self-subunit swapping occurs in another gene type of cobalt nitrile hydratase.
- Author
-
Yi Liu, Wenjing Cui, Yuanyuan Xia, Youtian Cui, Michihiko Kobayashi, and Zhemin Zhou
- Subjects
Medicine ,Science - Abstract
Self-subunit swapping is one of the post-translational maturation of the cobalt-containing nitrile hydratase (Co-NHase) family of enzymes. All of these NHases possess a gene organization of , which allows the activator protein to easily form a mediatory complex with the α-subunit of the NHase after translation. Here, we discovered that the incorporation of cobalt into another type of Co-NHase, with a gene organization of , was also dependent on self-subunit swapping. We successfully isolated a recombinant NHase activator protein (P14K) of Pseudomonas putida NRRL-18668 by adding a Strep-tag N-terminal to the P14K gene. P14K was found to form a complex [α(StrepP14K)(2)] with the α-subunit of the NHase. The incorporation of cobalt into the NHase of P. putida was confirmed to be dependent on the α-subunit substitution between the cobalt-containing α(StrepP14K)(2) and the cobalt-free NHase. Cobalt was inserted into cobalt-free α(StrepP14K)(2) but not into cobalt-free NHase, suggesting that P14K functions not only as a self-subunit swapping chaperone but also as a metallochaperone. In addition, NHase from P. putida was also expressed by a mutant gene that was designed with a order. Our findings expand the general features of self-subunit swapping maturation.
- Published
- 2012
- Full Text
- View/download PDF
21. AMPT: Automatic Mixed-Precision Tuning Based on Accuracy Gain.
- Author
-
Jiangwei Hao, Yuanyuan Xia, Fei Li, Hongru Yang, Zongjiang Yi, Bei Zhou, and Jianmin Pang
- Published
- 2023
- Full Text
- View/download PDF
22. Superblock-based performance optimization for Sunway Math Library on SW26010 many-core processor.
- Author
-
Hao Cao, Shaozhong Guo, Jiangwei Hao, Yuanyuan Xia, and Jinchen Xu
- Published
- 2022
- Full Text
- View/download PDF
23. Design of variable precision transcendental function automatic generator.
- Author
-
Jiangwei Hao, Jinchen Xu, Shaozhong Guo, and Yuanyuan Xia
- Published
- 2022
- Full Text
- View/download PDF
24. Error detection of arithmetic expressions.
- Author
-
Yuanyuan Xia, Shaozhong Guo, Jiangwei Hao, Dan Liu, and Jinchen Xu
- Published
- 2021
- Full Text
- View/download PDF
25. Detection of Data Integrity Attacks in Distributed State Estimation.
- Author
-
Yuanyuan Xia, Shuangping Su, Housheng Su, Xinting Zhang, Weijie Luo, and Wen Yang 0002
- Published
- 2021
- Full Text
- View/download PDF
26. Consensus-based filtering under false data injection attacks.
- Author
-
Yuanyuan Xia, Wen Yang 0002, and Zhiyun Zhao
- Published
- 2019
- Full Text
- View/download PDF
27. A retrospective study of chemotherapeutic effect without wide-margin surgery or radiation therapy in dogs with oral malignant melanoma.
- Author
-
Yuanyuan Xia, Liao, Albert Taiching, and Jihjong Lee
- Subjects
THERAPY dogs ,MELANOMA ,RADIOTHERAPY ,DOGS ,PROGNOSIS ,SURVIVAL rate - Abstract
Copyright of Canadian Veterinary Journal / Revue Vétérinaire Canadienne is the property of Canadian Veterinary Medical Association and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
28. Risk factors of postoperative neurodevelopmental abnormalities in neonates with critical congenital heart disease
- Author
-
Yuanyuan XIA, Mingnan LIU, Jiajie FAN, Yunxiang QIU, Xianghong ZHANG, Zhijie ZHENG, and Shanshan SHI
- Subjects
General Medicine - Published
- 2023
- Full Text
- View/download PDF
29. Boosting Piezoresistive Sensitivity of MXene/rGO Foam-Based Pressure Sensors by Flash Instantaneous Radiation
- Author
-
Jing Gao, Yuanyuan Xia, Jiang Zhao, Peixin Niu, Yuming Fang, Jingjin Shen, and Rongqing Xu
- Subjects
Electrical and Electronic Engineering ,Instrumentation - Published
- 2022
- Full Text
- View/download PDF
30. Significant Improvement of Both Catalytic Efficiency and Stability of Fructosyltransferase from Aspergillus niger by Structure-Guided Engineering of Key Residues in the Conserved Sequence of the Catalytic Domain
- Author
-
Yuanyuan Xia, Wenwen Guo, Laichuang Han, Wei Shen, Xianzhong Chen, and Haiquan Yang
- Subjects
General Chemistry ,General Agricultural and Biological Sciences - Published
- 2022
- Full Text
- View/download PDF
31. Development of surface displaying system for heterologous protein expression in Candida tropicalis
- Author
-
Tingting Wang, Haibing Zhang, Mengxuan Li, Jiaxi Zheng, Yuanyuan Xia, Haiquan Yang, Wei Shen, and Xianzhong Chen
- Subjects
Microbiology ,Applied Microbiology and Biotechnology ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Food Science - Published
- 2022
- Full Text
- View/download PDF
32. Development of multi-epitope mRNA vaccine against Clostridioides difficile using reverse vaccinology and immunoinformatics approaches
- Author
-
Caixia Tan, Yuanyuan xiao, Ting Liu, Siyao Chen, Juan Zhou, Sisi Zhang, Yiran Hu, Anhua Wu, and Chunhui Li
- Subjects
Clotridioides difficile (C. difficile) ,mRNA vaccine ,Immunoinformatics ,Reverse vaccinology (RV) ,Molecular docking ,Molecular dynamics (MD) simulation ,Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 - Abstract
Clostridioides difficile (C. difficile), as the major pathogen of diarrhea in healthcare settings, has become increasingly prevalent within community populations, resulting in significant morbidity and mortality. However, the therapeutic options for Clostridioides difficile infection (CDI) remain limited, and as of now, no authorized vaccine is available to combat this disease. Therefore, the development of a novel vaccine against C. difficile is of paramount importance. In our study, the complete proteome sequences of 118 strains of C. difficile were downloaded and analyzed. We found four antigenic proteins that were highly conserved and can be used for epitope identification. We designed two vaccines, WLcd1 and WLcd2, that contain the ideal T-cell and B-cell epitopes, adjuvants, and the pan HLA DR-binding epitope (PADRE) sequences. The biophysical and chemical assessments of these vaccine candidates indicated that they were suitable for immunogenic applications. Molecular docking analyses revealed that WLcd1 bonded with higher affinity to Toll-like receptors (TLRs) than WLcd2. Furthermore, molecular dynamics (MD) simulations, performed using Gmx_MMPBSA v1.56, confirmed the binding stability of WLcd1 with TLR2 and TLR4. The preliminary findings suggested that this multi-epitope vaccine could be a promising candidate for protection against CDI; however, experimental studies are necessary to confirm these predictions.
- Published
- 2024
- Full Text
- View/download PDF
33. Correlation between intestinal CRE colonization and consequent systemic infection in hospitalized patients in China
- Author
-
Yuanyuan Xiao, Juping Duan, Caixia Tan, Ju Zou, Siyao Chen, Ting Liu, Lina Zhang, Xin Chen, Yajing Xu, Yuanyuan Li, Anhua Wu, and Chunhui Li
- Subjects
Carbapenem-resistant Enterobacterales ,CRE ,Colonization ,Infection ,Prediction model ,Medicine ,Science - Abstract
Abstract It is generally believed that Carbapenem-resistant Enterobacterales (CRE) colonization is primarily responsible for systemic infection in humans. However, there is no consensus on whether decolonization should be recommended in clinical practice. In China, the specific situation of CRE colonization and consequent systemic infection in hospitalized patients necessitates further exploration. We conducted a cohort study and analyzed various clinical characteristics of inpatients with intestinal CRE colonization. A risk prediction model for consequent CRE infection was established and externally validated. Our prediction model is freely available online at https://creinfection.shinyapps.io/dynnomapp/ . 839 intestinal CRE colonization samples from inpatients were included. 317 cases of intestinal CRE colonization were enrolled, 25.9% of whom developed systemic infections. The consequent CRE infection rates of Klebsiella pneumoniae and Escherichia coli were 27.0% and 32.3%. The departments at high risk for subsequent CRE infection were respiratory medicine, hematology, and intensive care unit. Secondary infection after intestinal CRE colonization in inpatients can significantly prolong the length of hospital stay (26 days vs. 33 days, P < 0.001), increase the total medical cost (144735.34¥ vs. 281852.34¥, P < 0.001), and has poor (85.11% vs. 52.44%, P < 0.001) efficacy and high mortality (5.96% vs. 18.29%, P = 0.001). Our study makes a significant contribution to comprehensively specify CRE infection, because these results can facilitate early identification of high-risk hospitalized patients, timely implementation to decolonize treatment interventions, ultimately achieve the goal of CRE nosocomial infection prevention and control.
- Published
- 2024
- Full Text
- View/download PDF
34. Association of cardiovascular disease and urate levels with aortic aneurysm: a bilateral mendelian randomization study
- Author
-
Yuanyuan Xiao and Tao Xiang
- Subjects
Medicine ,Science - Abstract
Abstract The aim of this study is to investigate the potential causal relationships between coronary artery disease (CAD), myocardial infarction (MI), urate levels, and aortic aneurysm (AA), abdominal aortic aneurysm (AAA), thoracic aortic aneurysm(TAA), aortic dissection (AD) in individuals of European ancestry. To examine the potential causal relationships between CAD, MI, and urate levels with AA, AAA, TAA, AD, respectively, we performed a two-sample Mendelian randomization (MR) analysis. Genetic instruments that reached genome-wide significance (p
- Published
- 2024
- Full Text
- View/download PDF
35. A CRISPR–Cas12a system for multi-gene editing (CCMGE) and metabolic pathway assembly in Starmerella bombicola
- Author
-
Min Zhang, Yibo Shi, Lihua Zhang, Shiying Zhu, Haiquan Yang, Wei Shen, Yuanyuan Xia, and Xianzhong Chen
- Published
- 2022
- Full Text
- View/download PDF
36. Enhancing thermostability and activity of sucrose phosphorylase for high-level production of 2-O-α-d-glucosylglycerol
- Author
-
Linli Yang, Lukasz Peplowski, Yujuan Shen, Haiquan Yang, Xianzhong Chen, Wei Shen, and Yuanyuan Xia
- Published
- 2022
- Full Text
- View/download PDF
37. A CRISPR–Cas9 System-Mediated Genetic Disruption and Multi-fragment Assembly in Starmerella bombicola
- Author
-
Yibo Shi, Lihua Zhang, Min Zhang, Jieyu Chu, Yuanyuan Xia, Haiquan Yang, Liming Liu, and Xianzhong Chen
- Subjects
Biomedical Engineering ,General Medicine ,Biochemistry, Genetics and Molecular Biology (miscellaneous) - Published
- 2022
- Full Text
- View/download PDF
38. Preparation of cellulose beads with high homogeneity, low crystallinity, and tunable internal structure
- Author
-
Yuanyuan Xia, Xinping Li, Yue Yuan, Jingshun Zhuang, and Wenliang Wang
- Subjects
Polymers and Plastics - Published
- 2022
- Full Text
- View/download PDF
39. Effects of W contents on the solid-state interfacial reactions of Sn/Co-W
- Author
-
Shuhui Chen, Chenlin Yang, Lingyue Tan, Yuanyuan Xia, Anmin Hu, Huiqin Ling, Yunwen Wu, Ming Li, and Tao Hang
- Subjects
Mechanics of Materials ,Mechanical Engineering ,General Materials Science - Published
- 2022
- Full Text
- View/download PDF
40. Evolution and development of methodological approaches for personnel management in Chinese educational institutions
- Author
-
Yuanyuan Xia
- Subjects
General Medicine - Published
- 2022
- Full Text
- View/download PDF
41. Insight into the broadened substrate scope of nitrile hydratase by static and dynamic structure analysis
- Author
-
Dong Ma, Zhongyi Cheng, Lukasz Peplowski, Laichuang Han, Yuanyuan Xia, Xiaodong Hou, Junling Guo, Dejing Yin, Yijian Rao, and Zhemin Zhou
- Subjects
General Chemistry - Abstract
The narrow substrate scope limits the wide industrial application of enzymes. Here, we successfully broadened the substrate scope of a nitrile hydratase (NHase) through mutation of two tunnel entrance residues based on rational tunnel calculation. Two variants, with increased specific activity, especially toward bulky substrates, were obtained. Crystal structure analysis revealed that the mutations led to the expansion of the tunnel entrance, which might be conducive to substrate entry. More importantly, molecular dynamics simulations illustrated that the mutations introduced anti-correlated movements to the regions around the substrate tunnel and the active site, which would promote substrate access during the dynamic process of catalysis. Additionally, mutations on the corresponding tunnel entrance residues on other NHases also enhanced their activity toward bulky substrates. These results not only revealed that residues located at the enzyme surface were a key factor in enzyme catalytic performance, but also provided dynamic evidence for insight into enzyme substrate scope broadening.
- Published
- 2022
- Full Text
- View/download PDF
42. Applications of non-invasive prenatal testing in 91280 spontaneous pregnancies and 3477 pregnant women undergoing in vitro Fertilization
- Author
-
Rong Wei Wei, Jingran Li, Xinran Lu, Miaomiao Zhang, Yuqin Fang, Yuanyuan Xia, Chaohong Wang, and Jiansheng Zhu
- Abstract
Background A large number of clinical studies based on spontaneous pregnancies (SP) have proved the superiority of non-invasive prenatal testing (NIPT), and whether this technology is suitable for the offspring of assisted reproductive technology (ART) has attracted people's attention. The aim of this study is to evaluate the application value of NIPT in screening for trisomy21(T21), trisomy18(T18), trisomy13(T13) and sex chromosome aneuploidy (SCA) in pregnant women underwent in vitro fertilization (IVF). Results A total of 804 cases (0.88% (804/91280), singleton = 795, twin = 9) of high-risk in the SP group, of the 558 cases (singleton = 556, twin = 2) that underwent invasive prenatal diagnosis (IPD), 343 cases (singleton = 342, twin = 1) were true positive, including 213 cases T21, 28 cases T18, 5 cases T13 and 97 cases (singleton = 96, twin = 1) SCA. The positive predictive value (PPV) of T21, T18, T13 and SCA in singleton pregnancies were 89.12% (213/239), 51.85% (28/54), 21.74% (5/23) and 40.00% (96/240), and the PPV of SCA in twin pregnancies was 100.00%. In the in vitro fertilization (IVF) group, IPD was underwent in 19 cases (singleton = 16, twin = 3) of the 27 cases (0.78% (27/3477), singleton = 16, twin = 3) high-risk, of which 9 cases (singleton = 8, twin = 1) were true positive, including 5 cases (singleton = 4, twin = 1) T21 and 4 cases of SCA. The PPV of singleton T21 and SCA was 66.67% (4/6) and 50.00% (4/8), and the PPV of twin T21 was 100.00% (1/1). There was no significant difference in sensitivity and specificity between the two groups. Based on follow-up, we found 1 case of T21 false negative results in SP group and no false negative case in IVF group. Additionally, the mean fetal fraction (FF) of IVF group was lower than that of SP group (11.23%vs.10.51%, p
- Published
- 2023
- Full Text
- View/download PDF
43. Long noncoding RNA SGO1-AS1 inactivates TGFβ signaling by facilitating TGFB1/2 mRNA decay and inhibits gastric carcinoma metastasis
- Author
-
Yan Long, Wenying Zheng, Jianhua Xu, Yixue Gu, Jiale Chen, Ruixin Zhang, Donglan Huang, Yuanyuan Xia, Ke Zhang, Min Deng, and Nan Du
- Subjects
Cancer Research ,Epithelial-Mesenchymal Transition ,Microarray ,RNA Stability ,Cell Cycle Proteins ,In situ hybridization ,Heterogeneous-Nuclear Ribonucleoproteins ,Metastasis ,Transforming Growth Factor beta1 ,Mice ,Transforming Growth Factor beta2 ,TGFβ ,lncRNA ,Downregulation and upregulation ,Cell Movement ,Stomach Neoplasms ,Transforming Growth Factor beta ,In vivo ,Transcription (biology) ,Cell Line, Tumor ,Biomarkers, Tumor ,medicine ,Animals ,Humans ,ZEB1 ,In Situ Hybridization, Fluorescence ,RC254-282 ,Chemistry ,Research ,Gene Expression Profiling ,Gastric carcinoma ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Long non-coding RNA ,Gene Expression Regulation, Neoplastic ,Reverse transcription polymerase chain reaction ,Autocrine Communication ,SGO1-AS1 ,Oncology ,Gene Knockdown Techniques ,Disease Progression ,Cancer research ,Heterografts ,Female ,RNA, Long Noncoding ,Polypyrimidine Tract-Binding Protein ,Protein Binding - Abstract
BackgroundAlthough thousands of long noncoding RNAs (lncRNAs) have been annotated, only a few lncRNAs have been characterized functionally. In this study, we aimed to identify novel lncRNAs involved in the progression of gastric carcinoma (GC) and explore their regulatory mechanisms and clinical significance in GC.MethodsA lncRNA expression microarray was used to identify differential lncRNA expression profiles between paired GCs and adjacent normal mucosal tissues. Using the above method, the lncRNA SGO1-AS1 was selected for further study. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) and in situ hybridization (ISH) were performed to detect SGO1-AS1 expression in GC tissues. Gain-of-function and loss-of-function analyses were performed to investigate the functions of SGO1-AS1 and its upstream and downstream regulatory mechanisms in vitro and in vivo.ResultsSGO1-AS1 was downregulated in gastric carcinoma tissues compared to adjacent normal tissues, and its downregulation was positively correlated with advanced clinical stage, metastasis status and poor patient prognosis. The functional experiments revealed that SGO1-AS1 inhibited GC cell invasion and metastasis in vitro and in vivo. Mechanistically, SGO1-AS1 facilitated TGFB1/2 mRNA decay by competitively binding the PTBP1 protein, resulting in reduced TGFβ production and, thus, preventing the epithelial-to-mesenchymal transition (EMT) and metastasis. In addition, in turn, TGFβ inhibited SGO1-AS1 transcription by inducing ZEB1. Thus, SGO1-AS1 and TGFβ form a double-negative feedback loop via ZEB1 to regulate the EMT and metastasis.ConclusionsSGO1-AS1 functions as an endogenous inhibitor of the TGFβ pathway and suppresses gastric carcinoma metastasis, indicating a novel potential target for GC treatment.
- Published
- 2021
44. Hot spot locating and optimization of calculation errors in arithmetic expressions
- Author
-
Jinchen Xu, Yuanyuan Xia, Jiangwei Hao, and Hao Cao
- Published
- 2022
- Full Text
- View/download PDF
45. Sugarcane-derived Bio‐Amine‐Responsive Colorimetric Films for real-time visual monitoring of the seafood freshness
- Author
-
Wenliang Wang, Xingjin Zhao, Yuanyuan Xia, Yanyi Xue, Jinbao Cheng, Feifei Yang, Yong Cui, Xinchun Chen, Ruanyu Wang, and Xinping Li
- Subjects
Agronomy and Crop Science - Published
- 2023
- Full Text
- View/download PDF
46. Superblock-based performance optimization for Sunway Math Library on SW26010 many-core processor
- Author
-
Yuanyuan Xia, Shaozhong Guo, Jinchen Xu, Cao Hao, and Jiangwei Hao
- Subjects
Matching (graph theory) ,Computer science ,SW26010 ,computer.software_genre ,Theoretical Computer Science ,Compensation (engineering) ,Scheduling (computing) ,Computer engineering ,Hardware and Architecture ,Path (graph theory) ,Code (cryptography) ,Leverage (statistics) ,Compiler ,computer ,Software ,Information Systems - Abstract
The SW26010 many-core processor is based on the Sunway architecture that is composed of management and computing processing elements (MPE and CPE, respectively), each of which is equipped with a stand-alone math library. The issue is that each Sunway Math Library (SML) version is written in assembly which is outside the power of compilers that take high-level languages as input; existing optimization approaches thus mainly rely on manual strategies, which are considered inefficient. In this paper, we leverage the concept of superblock scheduling, a well-known compilation technique, and present a tool named SMPOT to optimize the SML. SMPOT first builds a superblock using a novel tail duplication algorithm, and then uses code motion restrictions to avoid code compensation, followed by matching the machine model. Finally, it reorders instructions on the main path by an activation algorithm based on available computing resources. The experimental results show that SMPOT can effectively improve the performance of the SML. The main path performance of MPE functions is improved by 10.61% on average and overall performance by 5.40%. The main path performance of CPE functions is improved by 5.72% on average and overall performance by 2.98%.
- Published
- 2021
- Full Text
- View/download PDF
47. Development of thermostable sucrose phosphorylase by semi-rational design for efficient biosynthesis of alpha-D-glucosylglycerol
- Author
-
Li Xiaoyu, Xianzhong Chen, Yu Cao, Lukasz Peplowski, Yuanyuan Xia, Xiaozhou Luo, Linli Yang, and Wei Shen
- Subjects
medicine.disease_cause ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,Biosynthesis ,Glucosides ,Enzyme Stability ,medicine ,Glycerol ,Biotechnologically Relevant Enzymes and Proteins ,Escherichia coli ,Sucrose phosphorylase ,Thermostability ,chemistry.chemical_classification ,biology ,Molecular dynamics simulations ,Rational design ,General Medicine ,biology.organism_classification ,Semi-rational design ,Enzyme ,chemistry ,Biochemistry ,Leuconostoc mesenteroides ,Glucosyltransferases ,α-D-glucosylglycerol ,Biotechnology - Abstract
Abstract Sucrose phosphorylase (SPase) can specifically catalyze transglycosylation reactions and can be used to enzymatically synthesize α-D-glycosides. However, the low thermostability of SPase has been a bottleneck for its industrial application. In this study, a SPase gene from Leuconostoc mesenteroides ATCC 12,291 (LmSPase) was synthesized with optimized codons and overexpressed successfully in Escherichia coli. A semi-rational design strategy that combined the FireProt (a web server designing thermostable proteins), structure–function analysis, and molecular dynamic simulations was used to improve the thermostability of LmSPase. Finally, one single-point mutation T219L and a combination mutation I31F/T219L/T263L/S360A (Mut4) with improved thermostability were obtained. The half-lives at 50 °C of T219L and Mut4 both increased approximately two-fold compared to that of wild-type LmSPase (WT). Furthermore, the two variants T219L and Mut4 were used to produce α-D-glucosylglycerol (αGG) from sucrose and glycerol by incubating with 40 U/mL crude extracts at 37 °C for 60 h and achieved the product concentration of 193.2 ± 12.9 g/L and 195.8 ± 13.1 g/L, respectively, which were approximately 1.3-fold higher than that of WT (150.4 ± 10.0 g/L). This study provides an effective strategy for improving the thermostability of an industrial enzyme. Key points • Predicted potential hotspot residues directing the thermostability of LmSPase by semi-rational design • Screened two positive variants with higher thermostability and higher activity • Synthesized α-D-glucosylglycerol to a high level by two screened positive variants
- Published
- 2021
48. Physicochemical impact of cellulose nanocrystal on oxidation of starch and starch based composite films
- Author
-
Guihua Yang, Jiachuan Chen, Lin Zhaoyun, Pedram Fatehi, Kai Zhang, and Yuanyuan Xia
- Subjects
Materials science ,Sodium Hypochlorite ,Starch ,Composite number ,02 engineering and technology ,Biochemistry ,Polyvinyl alcohol ,Permeability ,Contact angle ,03 medical and health sciences ,chemistry.chemical_compound ,Structural Biology ,Tensile Strength ,Oxidizing agent ,Carboxylate ,Cellulose ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Microscopy, Confocal ,food and beverages ,Green Chemistry Technology ,General Medicine ,021001 nanoscience & nanotechnology ,chemistry ,Nanocrystal ,Chemical engineering ,Polyvinyl Alcohol ,Nanoparticles ,0210 nano-technology ,Hydrophobic and Hydrophilic Interactions ,Oxidation-Reduction - Abstract
A cellulose nanocrystal based oxidation system is developed for oxidizing starch in the presence of NaClO, and provides an alternative and green method to improve the oxidizing degree of oxidized starch. The underlying mechanism for the oxidation was studied with confocal laser scanning microscopy. It was found that cellulose nanocrystal would penetrate into the starch microparticles and contribute to oxidation. The function of cellulose nanocrystal on the physicochemical properties of oxidized starch was investigated. With the incorporation of the oxidized starch into starch/polyvinyl alcohol/glyceryl composite films, the mechanical property and transparency of the films improved substantially. The highest oxidation level of starch was attained at 0.5 wt% cellulose nanocrystal dosage and the carboxylate content was 1.10%, the composite film showed the maximum transparency of 0.66 and highest contact angle of 102.0°. Meanwhile, the best film was obtained with oxidized starch containing 1.0 wt% cellulose nanocrystal. Compared to native starch and TEMPO-oxidated starch, the cellulose nanocrystal-based oxidized starch improved the hydrophobicity of film more substanially. In conclusion, cellulose nanocrystal acts as prooxidant and reforcing agent in this starch-based composite film, which makes them promising materials in the preparation of novel composite materials.
- Published
- 2021
- Full Text
- View/download PDF
49. Tailoring the Hinge Residue at the Substrate Access Tunnel Entrance Improves the Catalytic Performance of Industrialized Nitrile Hydratase Toward 3‐Cyanopyridine
- Author
-
Yuanyuan Xia, Meng Yin, Lukasz Peplowski, Zhongyi Cheng, and Zhemin Zhou
- Subjects
General Chemistry - Published
- 2022
- Full Text
- View/download PDF
50. Design of variable precision transcendental function automatic generator
- Author
-
Jinchen Xu, Yuanyuan Xia, Jiangwei Hao, and Shaozhong Guo
- Subjects
Generator (computer programming) ,Speedup ,Scale (ratio) ,Transcendental function ,Computer science ,Computation ,Interval (mathematics) ,computer.software_genre ,Theoretical Computer Science ,Hardware and Architecture ,Code (cryptography) ,Compiler ,Arithmetic ,computer ,Software ,Information Systems - Abstract
The performance of transcendental functions is important to high-performance applications. Various customized implementations of transcendental functions in practice to obtain better performance for some particular applications, but specializing the transcendental functions for each individual application cannot scale with the increase and diversity of the latter. It is thus of vital importance to design and implement an automatic generator for transcendental functions. This article implements an automatic generator TGen (transcendental function generator) for variable precision transcendental functions. Given a specific computation interval, TGen can automatically generate independent implementations with different precisions for a transcendental function, and select the most suitable version for the target by means of a code filtering strategy. Our generator can now support the automatic generation of 18 representative transcendental functions. The experimental results show that TGen can generate code with the unfixed accuracy, and the performance of the generated code is superior to that of the code generated by metalibm. More specifically, when compiled with the GCC compiler, the code generated by TGen can provide a mean speedup of 1.84 $$\times$$ over that of a metalibm’s version, while the speedup of TGen’s code over that of the metalibm is 1.27 $$\times$$ when compiled with the SW5CC compiler.
- Published
- 2021
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.