20 results on '"Yu Ping Luo"'
Search Results
2. Automatic network protocol message format analysis
- Author
-
Ming-Ming Xiao, Yu-Ping Luo, and Shi-Long Zhang
- Subjects
Statistics and Probability ,MQTT ,Internet Protocol Control Protocol ,business.industry ,computer.internet_protocol ,Computer science ,Resource Reservation Protocol ,General Engineering ,020206 networking & telecommunications ,02 engineering and technology ,computer.file_format ,law.invention ,Internet protocol suite ,Artificial Intelligence ,law ,Internet Protocol ,0202 electrical engineering, electronic engineering, information engineering ,Internetwork protocol ,020201 artificial intelligence & image processing ,Message broker ,Wireless Application Protocol Bitmap Format ,business ,computer ,Computer network - Published
- 2016
3. The Simplicity of Sculpture Art under Aesthetic Vision
- Author
-
Yu-Ping Luo
- Subjects
Sculpture ,Aesthetics ,media_common.quotation_subject ,Art ,Simplicity ,media_common - Published
- 2018
4. Conservation and divergence of transcriptional coregulations between box C/D snoRNA and ribosomal protein genes in Ascomycota
- Author
-
Zhen Dong Xiao, Chuan He Yu, Xiao Min Leng, Li-Ting Diao, Si Guang Li, Jun-Hao Li, Liang-Hu Qu, Bin Li, Yu Ping Luo, and Hui Zhou
- Subjects
Ribosomal Proteins ,Transcription, Genetic ,Genetic Speciation ,Computational biology ,Biology ,Ribosome ,Conserved sequence ,Ascomycota ,Ribosomal protein ,Schizosaccharomyces ,RNA, Small Nucleolar ,Small nucleolar RNA ,Molecular Biology ,Gene ,Conserved Sequence ,Regulation of gene expression ,Genetics ,Base Sequence ,Computational Biology ,Genetic Variation ,Articles ,Ribosomal RNA ,biology.organism_classification ,Gene Expression Regulation ,Genome, Fungal ,Transcription Factors - Abstract
Coordinated assembly of the ribosome is essential for proper translational activity in eukaryotic cells. It is therefore critical to coordinate the expression of components of ribosomal programs with the cell's nutritional status. However, coordinating expression of these components is poorly understood. Here, by combining experimental and computational approaches, we systematically identified box C/D snoRNAs in four fission yeasts and found that the expression of box C/D snoRNA and ribosomal protein (RP) genes were orchestrated by a common Homol-D box, thereby ensuring a constant balance of these two genetic components. Interestingly, such transcriptional coregulations could be observed in most Ascomycota species and were mediated by different cis-regulatory elements. Via the reservation of cis elements, changes in spatial configuration, the substitution of cis elements, and gain or loss of cis elements, the regulatory networks of box C/D snoRNAs evolved to correspond with those of the RP genes, maintaining transcriptional coregulation between box C/D snoRNAs and RP genes. Our results indicate that coregulation via common cis elements is an important mechanism to coordinate expression of the RP and snoRNA genes, which ensures a constant balance of these two components.
- Published
- 2014
5. Effects of Perceived Social Loafing, Social Interdependence, and Group Affective Tone on Students’ Group Learning Performance
- Author
-
Yu-Ping Luo and Chih-Ching Teng
- Subjects
Response rate (survey) ,Social loafing ,business.industry ,Group affective tone ,education ,Hospitality management studies ,Questionnaire ,Education ,Hospitality ,Psychology ,business ,Sociology of Education ,Curriculum ,Social psychology - Abstract
This study investigates how students perceived social loafing and social interdependence influence group learning performance through group affective tone in undergraduate hospitality and tourism curricula. A questionnaire survey was administered to collect data from college students majoring hospitality and tourism management at four Taiwanese universities. Of 660 distributed questionnaires, 634 questionnaires were returned, accounted for a 96 % response rate. To justify the aggregated individual data to the group level, this study used the within-group inter-rater agreement (r wg) to assess and determine 123 valid learning groups for data analysis. The analytical results show that group affective tone significantly mediates the effect of social loafing and social interdependence on group productivity, but not on group final grades. Specific implications and suggestions are also discussed.
- Published
- 2014
6. Synthesis and Properties of Ni-Doping Nano-TiO2 Photocatalysts
- Author
-
Qing Ju Liu, Zhong Qi Zhu, Jin Zhang, Yu Ping Luo, and Qiang Liu
- Subjects
Materials science ,Methyl blue ,Doping ,Sintering ,Degussa p25 ,General Medicine ,Nano tio2 ,law.invention ,chemistry.chemical_compound ,chemistry ,law ,Photocatalysis ,Degradation (geology) ,Fluorescent lamp ,Nuclear chemistry - Abstract
Ni-doping TiO2 photocatalysts were synthesized by sol-gel method and characterized by XRD, Size Distribution and PL instruments. Meanwhile, the degradation of methyl blue (MB) was investigated under fluorescent lamp to test the photocatalytic activity of the samples with different Ni-doping concentration and sintered at different temperature. The results show that the photocatalytic activity of TiO2 photocatalysts is much higher than that of Degussa P25. The optimum preparation parameters are that the pH value is 2.5, Ni: Ti=0.01 (molar ratio) and sintering temperature is 500°C.
- Published
- 2013
7. Incorporation of immunostimulatory motifs in the transcribed region of a plasmid DNA vaccine enhances Th1 immune responses and therapeutic effect against Mycobacterium tuberculosis in mice
- Author
-
Qing Qu, Wen-Jiang Zhou, Harry Thangaraj, Dougtas B. Lowrie, Juan Wu, Hui Ma, Yu-Ping Luo, and Xiao-Yong Fan
- Subjects
T cell ,Amino Acid Motifs ,Gene Expression ,Cell Line ,DNA vaccination ,Mycobacterium tuberculosis ,Mice ,Immune system ,Plasmid ,Bacterial Proteins ,Antigen ,Vaccines, DNA ,medicine ,Animals ,Immunologic Factors ,Tuberculosis ,Tuberculosis Vaccines ,Lung ,Mycobacterium leprae ,Vaccines, Synthetic ,General Veterinary ,General Immunology and Microbiology ,biology ,Gene Expression Profiling ,Macrophages ,Public Health, Environmental and Occupational Health ,Chaperonin 60 ,Th1 Cells ,biology.organism_classification ,Antibodies, Bacterial ,Molecular biology ,Bacterial Load ,Infectious Diseases ,medicine.anatomical_structure ,Immunoglobulin G ,B7-1 Antigen ,biology.protein ,Cytokines ,Molecular Medicine ,B7-2 Antigen ,Antibody ,Spleen ,Plasmids - Abstract
T-helper type 1 (Th1) immune response is involved in the development of protective immunity against Mycobacterium tuberculosis. Thus, an increase in Th1 and cellular immune responses should lead to enhanced anti-mycobacterial activity. In this study, we aimed to improve Th1 immune responses to a DNA vaccine by adding potentially immunostimulatory nucleotide sequences into the transcribed region downstream of the antigen. The Mycobacterium leprae gene for hsp65, codon-optimized for expression in mammalian cells, was inserted into pVAX1 with and without 3'-sequences containing CpG and dsRNA motifs. When the plasmid contained both motifs, transfected murine macrophage-like RAW264.7 cells showed markedly increased levels of mRNA for immune molecules of Th1 (IFN-α, IL-12) and Th17 (IL-17, IL-23 and IL-6) responses and for T cell co-stimulatory molecules (CD80 and CD86) but not for a Th2 response (IL-4 and IL-10). Immunized mice showed substantially increased serum anti-Hsp65 IgG2a antibody levels and IFN-γ production by spleen cells, confirming enhancement of the Th1 response in vivo. Furthermore, when non-vaccinated mice were infected with H37Rv by low-dose aerosol challenge, and then 4 weeks later were treated with plasmids by intramuscular injection, the mice that had been treated with plasmids containing immunostimulatory motifs showed an enhanced reduction in mycobacterial loads in lung and spleen. We conclude that DNA vaccines may be made more highly immunogenic and more effective for treatment by including transcribed stimulatory sequences.
- Published
- 2011
8. The Influence of BaF2 Flux Concentration on the Luminescence of Sr3SiO5:Eu2+
- Author
-
Yu Ping Luo, Zhao Guo, Li Zhao, Dan Dan Cao, Guo Feng Xu, Rui Wang, Quan Sheng Liu, and Xi Yan Zhang
- Subjects
Tetragonal crystal system ,Materials science ,law ,Excited state ,General Engineering ,Analytical chemistry ,Phosphor ,Emission spectrum ,Luminescence ,Spectral line ,Excitation ,Light-emitting diode ,law.invention - Abstract
Silicate strontium phosphor for white light LEDs was synthesized by high temperature solid-state method. The structure, surface, excitation and emission spectra of Sr3SiO5: Eu2+ phosphor which contain different mass fractions of BaF2 were measured. The results show that BaF2 quantity affects the structure, surface and spectra of Sr3SiO5: Eu2+ sample. The sample has the best properties when the BaF2 concentration comes to 2.0wt%. The structure of sample is tetragonal phase Sr3SiO5. The emission and excitation spectra peaks locate respectively at 575nm and 537nm. The samples can be excited by InGaN blue chip. The emission peaks appeared apparent red shift with the increase of BaF2 concentration. A white light emission spectrum with good color rendition was obtained by coupling the phosphor with blue chip.
- Published
- 2011
9. Research on non-steam-cured and non-fired fly-ash thermal insulating materials
- Author
-
Li-jiu Wang and Yu-ping Luo
- Subjects
Sorel cement ,Materials science ,business.industry ,Mechanical Engineering ,Energy Engineering and Power Technology ,Raw material ,Geotechnical Engineering and Engineering Geology ,Thermal conduction ,Fuel Technology ,Thermal conductivity ,Compressive strength ,Flexural strength ,Thermal insulation ,Fly ash ,Composite material ,business ,Engineering (miscellaneous) - Abstract
A thermal insulating material is synthesized via a non-steam-cured and non-fired route by using fly-ash, sorel cement and hydrogen peroxide solution as raw material. Properties such as apparent density, compressive strength, bending strength, thermal conductivity, water resistance, and thermal tolerance of this matrial are studied, some influencing factors on its performance discussed. This material has an apparent density of 360 kg/m3, a compressive strength of 1.86 MPa, a thermal conduction coefficient of 0.072 W/(m·K), a softening coefficient of 0.55, and a thermal tolerant temperature of 300 °C. Test results show that this material is light in weight, of high strength, and good thermal insulation. In addition, neither steam-curing nor sintering is needed in producing it. Further more, large amount of fly ash is used in this material, making it a low cost and environment-friendly building material.
- Published
- 2008
10. Population genetic diversity and structure ofDipteronia dyerana(Sapindaceae), a rare endemic from Yunnan Province, China, with implications for conservation
- Author
-
Hans Peter Comes, Zhi-Qin Ouyang, Ying-Xiong Qiu, Cheng-Xin Fu, and Yu-Ping Luo
- Subjects
education.field_of_study ,In situ conservation ,Genetic diversity ,Ecology ,Population ,Plant Science ,Biology ,Ex situ conservation ,Genetic drift ,Genetic marker ,Genetic variation ,education ,Ecology, Evolution, Behavior and Systematics ,Local adaptation - Abstract
Dipteronia dyerana is a rare endemic from south-eastern Yunnan Province (China) that is known from only five natural populations, two of which occur outside a nature reserve. To obtain base-line information of the population structure, history and conservation of the species, we investigated patterns of genetic diversity within and among all natural populations, in addition to an ex situ conserved population, using inter-simple sequence repeat (ISSR) DNA markers. Across all populations surveyed, average within-population diversity was remarkably low (e.g., 0.088 for Nei's gene diversity), with populations from outside the nature reserve maintaining the highest amounts of genetic diversity. Among all natural populations, high genetic differentiation (G ST = 0.375) was detected, together with an isolation-by-distance pattern. Past habitat fragmentation, restricted gene flow and, to a lesser extent, genetic drift are proposed to be the determinant factors responsible for the low genetic diversity and high genetic differentiation observed, although reproductive-ecological factors, such as a mixed-mating system and low seedling recruitment due to inbreeding, might also play a role. We strongly recommend in situ conservation of those D. dyerana populations occurring outside the nature reserve, as they contain the highest proportion of the species' total ISSR fragment diversity, which might be eventually relevant for local adaptation. Our data further indicate that the ex situ conserved population insufficiently represents the genetic diversity present in the species. It is therefore suggested to sample at least four natural populations to cover a reasonable proportion (≥ 95%) of the species' genetic variation for ex situ conservation.
- Published
- 2007
11. Identification and Functional Analysis of 20 Box H/ACA Small Nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe
- Author
-
Peng Zhang, Hui Zhou, Si-Guang Li, Yu-Ping Luo, and Liang-Hu Qu
- Subjects
Genetics ,biology ,urogenital system ,Nucleolus ,Hypothetical protein ,Intron ,RNA ,Cell Biology ,Ribosomal RNA ,biology.organism_classification ,Polymerase Chain Reaction ,Biochemistry ,RNA, Ribosomal ,Schizosaccharomyces ,Schizosaccharomyces pombe ,RNA, Ribosomal, 18S ,Nucleic Acid Conformation ,RNA, Small Nucleolar ,Small nucleolar RNA ,Molecular Biology ,Gene ,Pseudouridine - Abstract
Considering all small nucleolar RNAs (snoRNAs) enriched in the nucleolus, we generated a specialized cDNA library of small nuclear RNAs from Schizosaccharomyces pombe and isolated, for the first time, 20 novel box H/ACA snoRNAs. Thirteen of these were characterized as novel guides that were predicted to direct 19 pseudouridylations in 18 S and 25 S rRNAs. The remaining seven snoRNAs were considered as orphan guides that lack sequence complementarity to either rRNAs or snRNAs. We have experimentally demonstrated the function of the 10 novel snoRNAs by gene deletion in the fission yeast. The snoRNAs were shown to be dispensable for the viability of S. pombe, although an impact of snR94 depletion on yeast growth, especially at 23 degrees C, was revealed. A total of 30 pseudouridylation sites were precisely mapped in the S. pombe rRNAs, showing a distinctive pseudouridylation pattern in the budding yeast. Interestingly, the absence of pseudouridylation on U2347 in S. pombe 25 S rRNA pointed out a critical role for Psi2345 in conferring a growth advantage for yeast. In contrast to the intron-encoded box C/D sno-RNAs in yeast, all box H/ACA snoRNAs appeared to be transcribed independently from intergenic regions between two protein-coding genes, except for snR35, which was nested in an open reading frame encoding for a hypothetical protein, although expressed from the opposite strand. Remarkably, snR90 was cotranscribed with an intron-encoded box C/D snoRNA, and this is the first demonstration of a non-coding RNA gene that encodes two different types of snoRNAs by its exon and intron. A detailed comparison of the S. pombe snoRNAs, with their functional homologues in diverse organisms, suggests a mechanism by which the snoRNAs have evolved in coordination with rRNAs to preserve the post-transcriptional modification sites among distant eukaryotes.
- Published
- 2005
12. Identification and functional analysis of a novel box C/D snoRNA fromSchizosaccharomyces pombe
- Author
-
Liang-Hu Qu, Hui Zhuo, Yu-Ping Luo, and Si-Guang Li
- Subjects
Genetics ,Multidisciplinary ,biology ,urogenital system ,Schizosaccharomyces pombe ,Intron ,RNA ,RRNA methylation ,Small nucleolar RNA ,biology.organism_classification ,Gene ,Primer extension ,Genomic organization - Abstract
By constructing and screening theSchizosaccharomyces pombe nuclear cDNA library, a novel small nucleolar RNAs (snoRNA) was identified. The novel snoRNA displays structural features typical of C/D box snoRNA family and possesses a 10-nt-long rRNA antisense element which is predicted to guide the 2′-O-methylation of the fission yeast 25S rRNA at G940. As expected, the rRNA ribose-methylation site predicted by the novel snoRNA was precisely mapped by a deoxynucleoside triphosphate concentrationdependent primer extension assay. The comparison of functional element of guide snoRNAs among eukaryotes reveals that the novel snoRNA is a partial counterpart of the budding yeast snR60 and was termed snR60-II. snR60-II gene nested in the intron of a non-coding RNA gene with an unknown function, which is the first example of a yeast snoRNA encoded in an intron of a non-coding RNA gene. Furthermore, a number of yeast snR60 homologues were also identified from other fungi and fly. Our results reveal that snR60 exhibits diverse genomic organization in eukaryotes, implying the high mobility of snR60 gene in the course of evolution.
- Published
- 2004
13. Advanced Building Materials and Sustainable Architecture
- Author
-
Yong Bo Shao, Shu Guang Hao, Yu Ping Luo, Ji Bo Xing, Zhi Yong Liu, Yong Bo Shao, Shu Guang Hao, Yu Ping Luo, Ji Bo Xing, and Zhi Yong Liu
- Subjects
- Civil engineering--Congresses, Building materials--Congresses, Sustainable architecture--Congresses, Architecture--Congresses
- Abstract
Selected, peer reviewed papers from the 2nd International Conference on Civil Engineering, Architecture and Building Materials (CEABM 2012), May 25-27, 2012, Yantai, China
- Published
- 2012
14. [Involvement of intron A into eukaryotic expression vector to improve immunogenicity of mycobacterial heat-shock protein 65 DNA vaccine in mice]
- Author
-
Juan, Wu, Hui, Ma, Xiao-yong, Fan, Qing, Qu, Yu-ping, Luo, and Douglas B, Lowrie
- Subjects
Mice ,Mice, Inbred BALB C ,Bacterial Proteins ,Genetic Vectors ,Vaccines, DNA ,Animals ,Female ,Chaperonin 60 ,Introns ,Plasmids - Abstract
To explore the involvement of intron A into eukaryotic expression vector to improve antigen expression efficiency and enhance immunogenicity of DNA vaccine in mice.As model antigen, the coding gene of mycobacterial Hsp65 was cloned into eukaryotic expression vector pCMV4.0 with intron A involved and pVAX1 without intron A involved, respectively. The resulted recombinant expression vectors were transfected into 293T cells and were then injected into BALB/c mice as DNA vaccines. Anti-Hsp65 specific IgG and isotype were detected by ELISA and T cell immune response was analyzed by enzyme-linked immunosorbent spot (ELISPOT) assay and intracellular cytokine staining.Compared with non-intron A pVAX1hsp65, the recombinant plasmid pCMV4.0hsp65 involved with intron A pVAX1hsp65 caused higher expression level of Hsp65 in 293T cells, and enhanced Th1 type immune response, which was defined as higher level of anti-Hsp65 specific total IgG level (3.76 ± 0.23 vs 3.15 ± 0.22, P0.01) and IgG2a/IgG1 ratio (4.08 ± 0.04 vs 2.23 ± 0.12, P0.01) and more IFN-γ-secreting CD4(+) ((2.0 ± 0.058)% vs (1.5 ± 0.087)%, t = 4.804, P0.01) and CD8(+) ((0.6 ± 0.058)% vs (1.0 ± 0.115)%, t = 3.098, P0.05) T lymphocytes. The difference showed statistical significance.Intron A can improve the expression efficiency of mycobacterial Hsp65 antigen and enhance immunogenicity of DNA vaccine in mice when involved into eukaryotic expression vector.
- Published
- 2012
15. Traffic Safety Evaluation in Long and Hill Slope Road Section Based on Principal Component Analysis and Hierarchical Cluster Analysis
- Author
-
Sheng-rui Zhang, Yu-ping Luo, Li-li Wang, and Gui-feng Gao
- Subjects
Geography ,business.industry ,Section (archaeology) ,Principal component analysis ,Structural engineering ,business ,Civil engineering ,Hierarchical clustering - Published
- 2009
16. [Mutagenesis, screening and characterization of mutants known as peroxisome biogenesis disorders in yeast]
- Author
-
Yu-Ping, Luo and Si-Guang, Li
- Subjects
Fungal Proteins ,Microscopy, Electron ,Protein Transport ,Cytosol ,Mutagenesis ,Mutation ,Peroxisomes ,Yarrowia ,Sulfuric Acid Esters - Abstract
Peroxisomes are essential for organisms' development and physiology. This fact is underscored by the lethality of a group of genetic disorders collectively known as the peroxisome biogenesis disorders (PBDs), such as Zellweger syndrome, in which peroxisomes fail to assemble properly. Defining the molecular bases of the PBDs has been the impetus behind the identification of the genes controlling peroxisome assembly, the PEX genes, from various modern organisms. Here as a original strain, Yarrowia lipolytica E122 was mutated by diethyl sulfate (DES) treatment and two mutants including temperature sensitive one were obtained. Compared to the initial strain, the two mutants showed more diffuse pattern of fluorescence characteristic of a cytosolic localization in immunofluorescence analysis, and showed no morphologically recognizable peroxisomes in electron micrographs. The two mutants arose from new gene mutation characterized by transformation and will be very useful in identification of new gene controlling peroxisome assembly from yeast.
- Published
- 2006
17. Molecular identification of Sinopodophyllum hexandrum and Dysosma species using cpDNA sequences and PCR-RFLP markers
- Author
-
Yu-Ping Luo, Ying-Xiong Qiu, Cheng-Xin Fu, and Wei Gong
- Subjects
Pharmacology ,biology ,Traditional medicine ,Organic Chemistry ,DNA, Chloroplast ,food and beverages ,Pharmaceutical Science ,biology.organism_classification ,Berberidaceae ,Polymerase Chain Reaction ,Analytical Chemistry ,Rhizome ,Sinopodophyllum ,Intergenic region ,Complementary and alternative medicine ,Chloroplast DNA ,Genetic marker ,Drug Discovery ,Dysosma ,Botany ,Molecular Medicine ,Restriction fragment length polymorphism ,Polymorphism, Restriction Fragment Length ,Drugs, Chinese Herbal - Abstract
Rhizomes of Sinopodophyllum hexandrum and Dysosma species, which have long been used in the traditional Chinese herbal medicine, have similar morphology and chemical composition. However, the podophyllotoxin content is higher in the rhizomes of S. hexandrum than in those of Dysosma species. The PCR-amplified fragments of trnT -trnL showed length variation between S. hexandrum and Dysosma species, and sequence comparison indicated that the length variation resulted from differential indels. There were species-specific PCR-RFLP markers of the chloroplast trnD -trnT region. Our results suggest that both chloroplast intergenic regions can be used for the identification of S. hexandrum and Dysosma Rhizoma medicines on the market.
- Published
- 2006
18. Automatic protocol reverse engineering using grammatical inference.
- Author
-
Ming-Ming Xiao and Yu-Ping Luo
- Subjects
- *
MACHINE learning , *ARTIFICIAL intelligence , *COMPUTER networks , *ELECTRONIC systems , *INFORMATION networks - Abstract
For a thorough understanding of procedures in various network applications, and to automatically classify, recognize, trace, and control them, it is necessary that the state machine representing application sessions is obtained in advance. This article presents a novel approach to reversely infer a protocol state machine from collected data of the application layer. Protocol state machines are derived using a method of error-correcting grammatical inference, which is based on symbol sequences that appear in the application sessions. The techniques are implemented into a tool called PREUGI, which is conducted in a real network, containing a number of real applications with several application layer protocols, to validate the proposed method. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
19. Population genetic diversity and structure of Dipteronia dyerana (Sapindaceae), a rare epidemic from Yunnan Province, China, with implications for conservation.
- Author
-
Ying-Xiong Qiu, Yu-Ping Luo, Comes, Hans Peter, Zhi-Qin Ouyang, and Cheng-Xin Fu&
- Subjects
SAPINDACEAE ,PLANT diversity ,ENDEMIC plants ,SAPINDALES - Abstract
Dipteronia dyerana is a rare endemic from south-eastern Yunnan Province (China) that is known from only five natural populations, two of which occur outside a nature reserve. To obtain base-line information of the population structure, history and conservation of the species, we investigated patterns of genetic diversity within and among all natural populations, in addition to an ex situ conserved population, using inter-simple sequence repeat (ISSR) DNA markers. Across all populations surveyed, average within-population diversity was remarkably low (e.g., 0.088 for Nei's gene diversity), with populations from outside the nature reserve maintaining the highest amounts of genetic diversity. Among all neural populations, high genetic differentiation (G
ST = 0.375) was detected, together with an isolation-by-distance pattern. Past habitat fragmentation, restricted gene flow and, to a lesser extent, genetic drift are proposed to be the determinant factors responsible for the low genetic diversity and high genetic differentiation observed, although reproductive-ecological factors, such as a mixed-mating system and low seedling recruitment due to inbreeding, might also play a role. We strongly recommend in situ conservation of those D. dyerana populations occurring outside the nature reserve, as they contain the highest proportion of the species total ISSR fragment diversity, which might be eventually relevant for local adaptation. Our data further indicate that the ex situ conserved population insufficiently represents the genetic diversity present in the species. It is therefore suggested to sample at least four natural populations to cover a reasonable proportion (≥95%) of the species' genetic variation for ex situ conservation. [ABSTRACT FROM AUTHOR]- Published
- 2007
- Full Text
- View/download PDF
20. Identification and Functional Analysis of 20 Box H/ACA Small Nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe.
- Author
-
Si-Guang Li, Hui Zhou, Yu-Ping Luo, Peng Zhang, and Liang-Hu Qu
- Subjects
- *
RNA , *SCHIZOSACCHAROMYCES pombe , *FUNCTIONAL analysis , *NUCLEOLUS , *NUCLEIC acids , *RIBOSE - Abstract
Considering all small nucleolar RNAs (snoRNAs) enriched in the nucleolus, we generated a specialized cDNA library of small nuclear RNAs from Schizosaccharomyces pombe and isolated, for the first time, 20 novel box H/ACA snoRNAs. Thirteen of these were characterized as novel guides that were predicted to direct 19 pseudouridylations in 18 S and 25 S rRNAs. The remaining seven snoRNAs were considered as orphan guides that lack sequence complementarity to either rRNAs or snRNAs. We have experimentally demonstrated the function of the 10 novel snoRNAs by gene deletion in the fission yeast. The snoRNAs were shown to be dispensable for the viability of S. pombe, although an impact of snR94 depletion on yeast growth, especially at 23 °C, was revealed. A total of 30 pseudouridylation sites were precisely mapped in the S. pombe rRNAs, showing a distinctive pseudouridylation pattern in the budding yeast. Interestingly, the absence of pseudouridylation on U2347 in S. pombe 25 S rRNA pointed out a critical role for ΨP2345 in conferring a growth advantage for yeast. In contrast to the intron-encoded box C/D snoRNAs in yeast, all box H/ACA snoRNAs appeared to be transcribed independently from intergenic regions between two protein-coding genes, except for snR35, which was nested in an open reading frame encoding for a hypothetical protein, although expressed from the opposite strand. Remarkably, snR90 was cotranscribed with an intron-encoded box C/D snoRNA, and this is the first demonstration of a non-coding RNA gene that encodes two different types of snoRNAs by its exon and intron. A detailed comparison of the S. pombe snoRNAs, with their functional homologues in diverse organisms, suggests a mechanism by which the snoRNAs have evolved in coordination with rRNAs to preserve the post-transcriptional modification sites among distant eukaryotes. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
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