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Abstract Background Several approaches can be used to determine the order of loci on chromosomes and hence develop maps of the genome. However, all mapping approaches are prone to errors either arising from technical deficiencies or lack of statistical support to distinguish between alternative orders of loci. The accuracy of the genome maps could be improved, in principle, if information from different sources was combined to produce integrated maps. The publicly available bovine genomic sequence assembly with 6× coverage (Btau_2.0) is based on whole genome shotgun sequence data and limited mapping data however, it is recognised that this assembly is a draft that contains errors. Correcting the sequence assembly requires extensive additional mapping information to improve the reliability of the ordering of sequence scaffolds on chromosomes. The radiation hybrid (RH) map described here has been contributed to the international sequencing project to aid this process. Results An RH map for the 30 bovine chromosomes is presented. The map was built using the Roslin 3000-rad RH panel (BovGen RH map) and contains 3966 markers including 2473 new loci in addition to 262 amplified fragment-length polymorphisms (AFLP) and 1231 markers previously published with the first generation RH map. Sequences of the mapped loci were aligned with published bovine genome maps to identify inconsistencies. In addition to differences in the order of loci, several cases were observed where the chromosomal assignment of loci differed between maps. All the chromosome maps were aligned with the current 6× bovine assembly (Btau_2.0) and 2898 loci were unambiguously located in the bovine sequence. The order of loci on the RH map for BTA 5, 7, 16, 22, 25 and 29 differed substantially from the assembled bovine sequence. From the 2898 loci unambiguously identified in the bovine sequence assembly, 131 mapped to different chromosomes in the BovGen RH map. Conclusion Alignment of the BovGen RH map with other published RH and genetic maps showed higher consistency in marker order and chromosome assignment than with the current 6× sequence assembly. This suggests that the bovine sequence assembly could be significantly improved by incorporating additional independent mapping information.

To improve productivity, reduce production costs, and minimize the environmental impacts of agriculture, the advancement of nitrogen (N) fertilizer management methods is needed. The objective of this study is to compare the use of Unmanned Aerial Vehicle (UAV) multispectral imagery and PlanetScope satellite imagery, together with plant height, leaf area index (LAI), soil moisture, and field topographic metrics to predict the canopy nitrogen weight (g/m2) of wheat fields in southwestern Ontario, Canada. Random Forests (RF) and support vector regression (SVR) models, applied to either UAV imagery or satellite imagery, were evaluated for canopy nitrogen weight prediction. The top-performing UAV imagery-based validation model used SVR with seven selected variables (plant height, LAI, four VIs, and the NIR band) with an R2 of 0.80 and an RMSE of 2.62 g/m2. The best satellite imagery-based validation model was RF, which used 17 variables including plant height, LAI, the four PlanetScope bands, and 11 VIs, resulting in an R2 of 0.92 and an RMSE of 1.75 g/m2. The model information can be used to improve field nitrogen predictions for the effective management of N fertilizer. [ABSTRACT FROM AUTHOR]

Examines gene expression of PsGA3ox1. Detection of PsGA3ox1 messenger RNA levels in prepollinated pericarps and ovules; Growth of seeds; Effects of seeds and hormones in on the expression of pericarp.