164 results on '"Yu Che Cheng"'
Search Results
2. Population-based high-throughput toxicity screen of human iPSC-derived cardiomyocytes and neurons
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Ching Ying Huang, Martin W. Nicholson, Jyun Yuan Wang, Chien Yu Ting, Ming Heng Tsai, Yu Che Cheng, Chun Lin Liu, Darien Z.H. Chan, Yi Chan Lee, Ching Chuan Hsu, Yu Hung Hsu, Chiou Fong Yang, Cindy M.C. Chang, Shu Chian Ruan, Po Ju Lin, Jen Hao Lin, Li Lun Chen, Marvin L. Hsieh, Yuan Yuan Cheng, Wan Tseng Hsu, Yi Ling Lin, Chien Hsiun Chen, Yu Hsiang Hsu, Ying Ta Wu, Timothy A. Hacker, Joseph C. Wu, Timothy J. Kamp, and Patrick C.H. Hsieh
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CP: Stem cell research ,Biology (General) ,QH301-705.5 - Abstract
Summary: In this study, we establish a population-based human induced pluripotent stem cell (hiPSC) drug screening platform for toxicity assessment. After recruiting 1,000 healthy donors and screening for high-frequency human leukocyte antigen (HLA) haplotypes, we identify 13 HLA-homozygous “super donors” to represent the population. These “super donors” are also expected to represent at least 477,611,135 of the global population. By differentiating these representative hiPSCs into cardiomyocytes and neurons we show their utility in a high-throughput toxicity screen. To validate hit compounds, we demonstrate dose-dependent toxicity of the hit compounds and assess functional modulation. We also show reproducible in vivo drug toxicity results using mouse models with select hit compounds. This study shows the feasibility of using a population-based hiPSC drug screening platform to assess cytotoxicity, which can be used as an innovative tool to study inter-population differences in drug toxicity and adverse drug reactions in drug discovery applications.
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- 2022
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3. Gut butyrate-producers confer post-infarction cardiac protection
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Hung-Chih Chen, Yen-Wen Liu, Kuan-Cheng Chang, Yen-Wen Wu, Yi-Ming Chen, Yu-Kai Chao, Min-Yi You, David J. Lundy, Chen-Ju Lin, Marvin L. Hsieh, Yu-Che Cheng, Ray P. Prajnamitra, Po-Ju Lin, Shu-Chian Ruan, David Hsin-Kuang Chen, Edward S. C. Shih, Ke-Wei Chen, Shih-Sheng Chang, Cindy M. C. Chang, Riley Puntney, Amy Wu Moy, Yuan-Yuan Cheng, Hsin-Yuan Chien, Jia-Jung Lee, Deng-Chyang Wu, Ming-Jing Hwang, Jennifer Coonen, Timothy A. Hacker, C-L. Eric Yen, Federico E. Rey, Timothy J. Kamp, and Patrick C. H. Hsieh
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Science - Abstract
Abstract The gut microbiome and its metabolites are increasingly implicated in several cardiovascular diseases, but their role in human myocardial infarction (MI) injury responses have yet to be established. To address this, we examined stool samples from 77 ST-elevation MI (STEMI) patients using 16 S V3-V4 next-generation sequencing, metagenomics and machine learning. Our analysis identified an enriched population of butyrate-producing bacteria. These findings were then validated using a controlled ischemia/reperfusion model using eight nonhuman primates. To elucidate mechanisms, we inoculated gnotobiotic mice with these bacteria and found that they can produce beta-hydroxybutyrate, supporting cardiac function post-MI. This was further confirmed using HMGCS2-deficient mice which lack endogenous ketogenesis and have poor outcomes after MI. Inoculation increased plasma ketone levels and provided significant improvements in cardiac function post-MI. Together, this demonstrates a previously unknown role of gut butyrate-producers in the post-MI response.
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- 2023
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4. Design and Effectiveness Analysis of an Alarm Clock App to Promote Behavior Change through Anxiety.
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Yu-Che Cheng and Hsiao-Yue Tsao
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- 2024
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5. Copy number variant hotspots in Han Taiwanese population induced pluripotent stem cell lines - lessons from establishing the Taiwan human disease iPSC Consortium Bank
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Ching-Ying Huang, Ling-Hui Li, Wan-Tseng Hsu, Yu-Che Cheng, Martin W. Nicholson, Chun-Lin Liu, Chien-Yu Ting, Hui-Wen Ko, Shih-Han Syu, Cheng-Hao Wen, Zhuge Yan, Hsiang-Po Huang, Hong-Lin Su, Po-Min Chiang, Chia-Ning Shen, Hsin-Fu Chen, B. Lin Ju Yen, Huai-En Lu, Shiaw-Min Hwang, Shih-Hwa Chiou, Hong-Nerng Ho, Jer-Yuarn Wu, Timothy J. Kamp, Joseph C. Wu, and Patrick C. H. Hsieh
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Human induced pluripotent stem cell ,Cell differentiation ,Stem cell bank ,Drug screening ,Copy number variant ,Hotspot ,Medicine - Abstract
Abstract Background The Taiwan Human Disease iPSC Service Consortium was established to accelerate Taiwan’s growing stem cell research initiatives and provide a platform for researchers interested in utilizing induced pluripotent stem cell (iPSC) technology. The consortium has generated and characterized 83 iPSC lines: 11 normal and 72 disease iPSC lines covering 21 different diseases, several of which are of high incidence in Taiwan. Whether there are any reprogramming-induced recurrent copy number variant (CNV) hotspots in iPSCs is still largely unknown. Methods We performed genome-wide copy number variant screening of 83 Han Taiwanese iPSC lines and compared them with 1093 control subjects using an Affymetrix genome-wide human SNP array. Results In the iPSCs, we identified ten specific CNV loci and seven “polymorphic” CNV regions that are associated with the reprogramming process. Additionally, we established several differentiation protocols for our iPSC lines. We demonstrated that our iPSC-derived cardiomyocytes respond to pharmacological agents and were successfully engrafted into the mouse myocardium demonstrating their potential application in cell therapy. Conclusions The CNV hotspots induced by cell reprogramming have successfully been identified in the current study. This finding may be used as a reference index for evaluating iPSC quality for future clinical applications. Our aim was to establish a national iPSC resource center generating iPSCs, made available to researchers, to benefit the stem cell community in Taiwan and throughout the world.
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- 2020
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6. An Interactive, Location-Aware Taiwanese Social Network for Both Everyday Use and Disaster Management.
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Tzu-Ping Lai, Shun Yao, Wing-Lun Siu, Yu-Che Cheng, Heng-Yi Su, and Yi-Chung Chen
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- 2019
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7. Human iPSC banking: barriers and opportunities
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Ching-Ying Huang, Chun-Lin Liu, Chien-Yu Ting, Yueh-Ting Chiu, Yu-Che Cheng, Martin W. Nicholson, and Patrick C. H. Hsieh
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Induced pluripotent stem cell (iPSC) ,Cell bank ,Personalized medicine ,Medicine - Abstract
Abstract The introduction of induced pluripotent stem cells (iPSCs) has opened up the potential for personalized cell therapies and ushered in new opportunities for regenerative medicine, disease modeling, iPSC-based drug discovery and toxicity assessment. Over the past 10 years, several initiatives have been established that aim to collect and generate a large amount of human iPSCs for scientific research purposes. In this review, we compare the construction and operation strategy of some iPSC banks as well as their ongoing development. We also introduce the technical challenges and offer future perspectives pertaining to the establishment and management of iPSC banks.
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- 2019
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8. Generation of an induced pluripotent stem cell (iPSC) line from a 40-year-old patient with the A8344G mutation of mitochondrial DNA and MERRF (myoclonic epilepsy with ragged red fibers) syndrome
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Yu-Ting Wu, Yu-Hung Hsu, Ching-Ying Huang, Ming-Ching Ho, Yu-Che Cheng, Cheng-Hao Wen, Hui-Wen Ko, Huai-En Lu, Yen-Chun Chen, Chia-Ling Tsai, Yi-Chao Hsu, Yau-Huei Wei, and Patrick C.H. Hsieh
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Biology (General) ,QH301-705.5 - Abstract
Mitochondrial defects are associated with clinical manifestations from common diseases to rare genetic disorders. Myoclonus epilepsy associated with ragged-red fibers (MERRF) syndrome results from an A to G transition at nucleotide position 8344 in the tRNALys gene of mitochondrial DNA (mtDNA) and is characterized by myoclonus, myopathy and severe neurological symptoms. In this study, Sendai reprogramming method was used to generate an iPS cell line carrying the A8344G mutation of mtDNA from a MERRF patient. This patient-specific iPSC line expressed pluripotent stem cell markers, possessed normal karyotype, and displayed the capability to differentiate into mature cells in three germ layers.
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- 2018
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9. A Study of Singular Value Decomposition for Wireless LAN Location Fingerprinting.
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Wen-Chen Lu, Yu-Che Cheng, and Shih-Hau Fang
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- 2016
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10. Generation of an induced pluripotent stem cell line from a 39-year-old female patient with severe-to-profound non-syndromic sensorineural hearing loss and a A1555G mutation in the mitochondrial MTRNR1 gene
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Yu-Hung Hsu, Yu-Ting Wu, Ching-Ying Huang, Ming-Ching Ho, Yu-Che Cheng, Shih-Han Syu, Huai-En Lu, Yen-Chun Chen, Chia-Ling Tsai, Hung-Ching Lin, Yau-Huei Wei, Yi-Chao Hsu, and Patrick C.H. Hsieh
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Biology (General) ,QH301-705.5 - Abstract
Sensorineural hearing loss (SNHL) is a prevalent form of deafness commonly arising from damage to the cochlear sensory hair cells and degeneration of the spiral ganglion neurons. In this study, Sendai virus was used to generate an induced pluripotent stem cell (iPSC) line from a 39-year-old female patient diagnosed with severe-to-profound, non-syndromic SNHL. The patient also carries a A1555G mutation in the mitochondrial 12S ribosome RNA gene (MTRNR1). This iPSC line was verified to express pluripotent markers, possess normal karyotype, harbor the specific mutation and demonstrated the capacity to differentiate into three germ layers.
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- 2017
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11. Generation of induced pluripotent stem cells derived from an autosomal dominant polycystic kidney disease patient with a p.Ser1457fs mutation in PKD1
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Ching-Ying Huang, Ming-Ching Ho, Jia-Jung Lee, Daw-Yang Hwang, Hui-Wen Ko, Yu-Che Cheng, Yu-Hung Hsu, Huai-En Lu, Hung-Chun Chen, and Patrick C.H. Hsieh
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Biology (General) ,QH301-705.5 - Abstract
Autosomal dominant polycystic kidney disease is one of the most prevalent forms of inherited cystic kidney disease, and can be characterized by kidney cyst formation and enlargement. Here we report the generation of a Type 1 ADPKD disease iPS cell line, IBMS-iPSC-012-12, which retains the conserved deletion of PKD1, normal karyotype and exhibits the properties of pluripotent stem cells such as ES-like morphology, expression of pluripotent markers and capacity to differentiate into all three germ layers. Our results show that we have successfully generated a patient-specific iPS cell line with a mutation in PKD1 for study of renal disease pathophysiology.
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- 2017
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12. Data from Cyclin E1 Inhibition can Overcome Sorafenib Resistance in Hepatocellular Carcinoma Cells Through Mcl-1 Suppression
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Da-Liang Ou, Ann-Lii Cheng, Yu-Yun Shao, Zi-Rui Feng, Yu-Che Cheng, Liang-In Lin, and Chiun Hsu
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Purpose: To clarify the effects of cyclin E1 suppression on antitumor efficacy of sorafenib in hepatocellular carcinoma cells and to explore the potential of combining sorafenib with cyclin-dependent kinase (CDK) inhibition in therapy.Experimental Design: The effects of cyclin E1 suppression on sorafenib-induced apoptosis were tested in both sorafenib-sensitive (Huh-7 and HepG2, IC50 5–6 μmol/L) and sorafenib-resistant (Huh-7R and HepG2R, IC50 14–15 μmol/L) hepatocellular carcinoma cells. The activity of pertinent signaling pathways and the expression of cell cycle and apoptosis-related proteins were measured using Western blotting. Efficacy of sorafenib combined with the pan-CDK inhibitor flavopiridol was tested both in vitro and in xenograft experiments. The pertinent downstream mediators of antitumor efficacy were tested in transient transfection and RNA interference experiments.Results: Cyclin E1 mRNA and protein expressions were suppressed after sorafenib treatment in sorafenib-sensitive but not in sorafenib-resistant hepatocellular carcinoma cells. Changes in cyclin E2 or D1 were not correlated with sorafenib sensitivity. The knockdown of cyclin E1 expression reversed the resistance of hepatocellular carcinoma cells to sorafenib in terms of cell growth and apoptosis induction, whereas the overexpression of cyclin E1 increased the resistance to sorafenib. The growth-inhibitory and apoptosis-inducing effects of sorafenib were enhanced by flavopiridol, and Mcl-1 suppression was determined to play a critical role in mediating this enhancing effect.Conclusions: The cyclin E1 suppression in hepatocellular carcinoma cells may serve as a pharmacodynamic biomarker for predicting sorafenib efficacy. The combination of sorafenib and CDK inhibitors may improve the efficacy of sorafenib in hepatocellular carcinoma. Clin Cancer Res; 22(10); 2555–64. ©2015 AACR.
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- 2023
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13. Supplementary materials and methods, supplement figure S1: to S12, and supplement table S1 from Cyclin E1 Inhibition can Overcome Sorafenib Resistance in Hepatocellular Carcinoma Cells Through Mcl-1 Suppression
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Da-Liang Ou, Ann-Lii Cheng, Yu-Yun Shao, Zi-Rui Feng, Yu-Che Cheng, Liang-In Lin, and Chiun Hsu
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Supplement Figure S1: The six E2Fs binding sites in cyclin E1 promoter; Supplement Figure S2: Suppression of cyclin E1 by sorafenib correlated with sorafenib sensitivity; Supplement Figure S3: Effects of sorafenib and the Raf kinase inhibitor on cyclin E1 suppression in HCC cells; Supplement Figure S4: Knockdown of cyclin E1, but not cyclin E2, significantly increased the sensitivity to sorafenib in HCC cells; Supplement Figure S5: Effects of cyclin E1 or Mcl-1 inhibition on sorafenib-induced apoptosis; Supplement Figure S6: Effects of E2F1 suppression on cyclin E1 expression; Supplement Figure S7: Effects of flavopiridol on cyclin E1 and Rb protein levels in HCC cells; Supplement Figure S8: Synergistic anti-tumor activity between sorafenib and the CDK inhibitor flavopiridol; Supplement Figure S9: Differential effect between sorafenib and the CDK inhibitor flavopiridol on cell-cycle progression of HCC cells; Supplement Figure S10: The apoptosis-related proteins measured by the Human Apoptosis Array kit; Supplement Figure S11: In vivo evidence of toxicity between sorafenib and flavopiridol in HCC cells; Supplement Figure S12: Flavopiridol enhanced the anti-tumor efficacy of sorafenib in vivo; and Supplement Table S1: Primers list and Supplementary materials and methods.
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- 2023
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14. Commensal gut microbiota-derived acetate and propionate enhance heart adaptation in response to cardiac pressure overload in mice
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Chen-Ju Lin, Yu-Che Cheng, Hung-Chih Chen, Yu-Kai Chao, Martin W. Nicholson, Eric C.L. Yen, Timothy J. Kamp, and Patrick C.H. Hsieh
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Mice ,Animals ,Medicine (miscellaneous) ,Heart ,Propionates ,Acetates ,Fibrosis ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Gastrointestinal Microbiome - Published
- 2022
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15. Fluid Flow Shear Stress Stimulation on a Multiplex Microfluidic Device for Rat Bone Marrow Stromal Cell Differentiation Enhancement
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Chia-Wen Tsao, Yu-Che Cheng, and Jhih-Hao Cheng
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microfluidics ,rat bone marrow stromal cell ,stem cell stimulation ,fluid flow shear stress ,neuronal cell differentiation ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
Microfluidic devices provide low sample consumption, high throughput, high integration, and good environment controllability advantages. An alternative to conventional bioreactors, microfluidic devices are a simple and effective platform for stem cell investigations. In this study, we describe the design of a microfluidic device as a chemical and mechanical shear stress bioreactor to stimulate rat bone marrow stromal cells (rBMSCs) into neuronal cells. 1-methyl-3-isobutylxanthine (IBMX) was used as a chemical reagent to induce rBMSCs differentiation into neurons. Furthermore, the shear stress applied to rBMSCs was generated by laminar microflow in the microchannel. Four parallel microfluidic chambers were designed to provide a multiplex culture platform, and both the microfluidic chamber-to-chamber, as well as microfluidic device-to-device, culture stability were evaluated. Our research shows that rBMSCs were uniformly cultured in the microfluidic device and differentiated into neuronal cells with IBMX induction. A three-fold increase in the neuronal cell differentiation ratio was noted when rBMSCs were subjected to both IBMX and fluid flow shear stress stimulation. Here, we propose a microfluidic device which is capable of providing chemical and physical stimulation, and could accelerate neuronal cell differentiation from bone marrow stromal cells.
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- 2015
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16. (+)-Naloxone inhibits morphine-induced chemotaxis via prevention of heat shock protein 90 cleavage in microglia
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Ru-Yin Tsai, Yu-Che Cheng, and Chih-Shung Wong
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cytoskeleton ,morphine tolerance ,neuroinflammation ,protrusion ,ruffling ,Medicine (General) ,R5-920 - Abstract
Microglia have a crucial role in maintaining neuronal homeostasis in the central nervous system. Immune factors released from microglia have important roles in nociceptive signal transduction. Activation of microglia seems to be a shared mechanism in pathological pain and morphine tolerance because pharmacological attenuation of microglia activation provides satisfactory management in both situations. Methods: In the present study, we investigated the effect of 1nM (+)-naloxone, which is not an opioid receptor antagonist, on morphine-induced activation of microglia EOC13.31 cells. Results: Our results showed that 1μM morphine enhanced microglia activation and migration, decreased α-tubulin acetylation, and induced heat shock protein 90 (HSP90) fragmentation and histone deacetylase 6 (HDAC6) expression. Morphine-induced α-tubulin deacetylation and HSP90 fragmentation were HDAC6-dependent. Pretreatment with (+)-naloxone (1nM) inhibited morphine-evoked microglia activation and chemotaxis and prevented α-tubulin deacetylation and HSP90 fragmentation by inhibiting HDAC6 expression. Conclusion: Based on the findings of the present study, we suggest that (+)-naloxone inhibits morphine-induced microglia activation by regulating HDAC6-dependent α-tubulin deacetylation and HSP90 fragmentation.
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- 2015
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17. Combined Treatment of Human Induced Pluripotent Stem Cell--Derived Cardiomyocytes and Endothelial Cells Regenerate the Infarcted Heart in Mice and Non-Human Primates.
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Yu-Che Cheng, Hsieh, Marvin L., Chen-Ju Lin, Chang, Cindy M. C., Ching-Ying Huang, Puntney, Riley, Wu Moy, Amy, Chien-Yu Ting, Zhing Herr Chan, Darien, Nicholson, Martin W., Po-Ju Lin, Hung-Chih Chen, Kim, Gina C., Jianhua Zhang, Coonen, Jennifer, Puja Basu, Simmons, Heather A., Yen-Wen Liu, Hacker, Timothy A., and Kamp, Timothy J.
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INDUCED pluripotent stem cells , *ENDOTHELIAL cells , *PRIMATES , *REGENERATION (Biology) , *CELL anatomy - Abstract
BACKGROUND: Remuscularization of the mammalian heart can be achieved after cell transplantation of human induced pluripotent stem cell (hiPSC)--derived cardiomyocytes (CMs). However, several hurdles remain before implementation into clinical practice. Poor survival of the implanted cells is related to insufficient vascularization, and the potential for fatal arrhythmogenesis is associated with the fetal cell--like nature of immature CMs. METHODS: We generated 3 lines of hiPSC-derived endothelial cells (ECs) and hiPSC-CMs from 3 independent donors and tested hiPSC--CM sarcomeric length, gap junction protein, and calcium-handling ability in coculture with ECs. Next, we examined the therapeutic effect of the cotransplantation of hiPSC-ECs and hiPSC-CMs in nonobese diabetic-severe combined immunodeficiency (NOD-SCID) mice undergoing myocardial infarction (n≥4). Cardiac function was assessed by echocardiography, whereas arrhythmic events were recorded using 3-lead ECGs. We further used healthy non-human primates (n=4) with cell injection to study the cell engraftment, maturation, and integration of transplanted hiPSC-CMs, alone or along with hiPSC-ECs, by histological analysis. Last, we tested the cell therapy in ischemic reperfusion injury in non-human primates (n=4, 3, and 4 for EC+CM, CM, and control, respectively). Cardiac function was evaluated by echocardiography and cardiac MRI, whereas arrhythmic events were monitored by telemetric ECG recorders. Cell engraftment, angiogenesis, and host--graft integration of human grafts were also investigated. RESULTS: We demonstrated that human iPSC-ECs promote the maturity and function of hiPSC-CMs in vitro and in vivo. When cocultured with ECs, CMs showed more mature phenotypes in cellular structure and function. In the mouse model, cotransplantation augmented the EC-accompanied vascularization in the grafts, promoted the maturity of CMs at the infarct area, and improved cardiac function after myocardial infarction. Furthermore, in non-human primates, transplantation of ECs and CMs significantly enhanced graft size and vasculature and improved cardiac function after ischemic reperfusion. CONCLUSIONS: These results demonstrate the synergistic effect of combining iPSC-derived ECs and CMs for therapy in the postmyocardial infarction heart, enabling a promising strategy toward clinical translation. [ABSTRACT FROM AUTHOR]
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- 2023
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18. Abstract GS102: Injection Of Human IPSC-derived Cardiac Cells Promote Cardiac Repair After Infarction In Nonhuman Primates
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Yu-Che Cheng, Marvin Hsieh, Chen-Ju Lin, Cindy M Chang, Ching-Ying Huang, Riley Puntney, Amy Moy, Ting Chien-Yu, Darien Chan, Martin Nicholson, Jen-Hao Lin, Po-Ju Lin, Hung-Chih Chen, Gina Kim, Jennifer Coonen, Yen-Wen Liu, Timothy A Hacker, Timothy Kamp, and Patrick C Hsieh
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Physiology ,Cardiology and Cardiovascular Medicine - Abstract
Introduction: Injection of induced pluripotent stem cell-derived cardiomyocytes has been reported as a promising approach to regenerate loss myocardium and restore heart function after ischemic injury. However, immaturity of the transplanted cardiomyocytes and their poor survival rates caused by limited blood supply remain as major hurdles for clinical translation. Hypothesis: We tested the hypothesis that co-culture of human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes (CMs) with hiPSC-derived endothelial cells (ECs) promotes CM maturation in vitro, and that co-transplantation of both hiPSC-CMs and hiPSC-ECs facilitates hiPSC-CM muscularization in myocardial ischemic injured mice and non-human primates. Methods and Results: We examined the therapeutic effect of co-transplantation of hiPSC-CMs and hiPSC-ECs in NOD-SCID mice undergoing myocardial infarction (N = 14 / group). Mice receiving co-transplantation had an improvement in ejection fraction compared to control (4.2 ± 1.2 % vs -8.4 ± 0.9 %, P < 0.0001), and even those receiving high-dose (-0.3 ± 0.9 %, P = 0.052) and low-dose (-2.4 ± 1.1 %, P = 0.001) hiPSC-CMs alone treatment. Moreover, less arrhythmic events were observed in co-transplantation using three-lead electrogram. To be more clinically relevant, we first showed in healthy non-human primates (N = 4) that hiPSC-CM engraftment, maturation, and integration was achieved when co-transplanted with hiPSC-ECs. Furthermore, we then examined the therapeutic effect of co-transplantation of hiPSC-CMs and hiPSC-ECs in rhesus macaques undergoing ischemia-reperfusion surgery (N = 3 / group). Consistent with the mouse model, co-transplantation in rhesus macaques significantly improved the ejection fraction (10 ± 1.3 % vs -1.8 ± 2.2 %, P = 0.010), accompanied by a reduced infarct size compared to control (16 ± 1.1 % vs 23 ± 3.3 %, P = 0.091). Conclusions: This study demonstrates the beneficial effects of co-transplantation of hiPSC-CMs with hiPSC-ECs, promoting hiPSC-CM maturation, enhancing neovascularization, and improving cardiac function in both mouse and non-human primate hearts. Delivery of this combined cell therapy holds promise for future clinical translation.
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- 2022
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19. Abstract P2016: Gut Microbiota-derived Short-chain Fatty Acids Benefit Cardiac Extracellular Matrix Remodeling In Pressure Overload
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Chen-Ju Lin, Yu-Che Cheng, Hung-Chih Chen, Yu-Kai Chao, Martin Nicholson, Eric Yen, Timothy Kamp, and Patrick C Hsieh
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Physiology ,Cardiology and Cardiovascular Medicine - Abstract
Introduction: The gut microbiota has been implicated in various heart diseases by producing metabolites that modulate host immunity and metabolism. In our previous study, we found that mice with dysbiosis suffered more from cardiac rupture, resulting in higher mortality than mice possessing commensal gut flora after myocardial infarction. This suggests that there are unexplored routes to cardiovascular health through the gut microbiota. Hypothesis: We hypothesize that a community of symbiotic gut microbiota is required for heart mechanical modifications during adaptive cardiac remodeling under stress. Methods and Results: Pressure-overload stress was induced by a transverse aortic constriction (TAC) surgery and dysbiosis was induced by antibiotic treatment (ABX) in mice. Under echocardiography, ABX-TAC mice showed worse cardiac outcomes versus controls (ejection fraction = 59% ± 2% vs 67% ± 2%, P < 0.001, N ≥ 12/group). Under microscopic examination of the extracellular matrix and tensile tests, ABX-TAC mice had larger fibrotic areas (9.4% ± 0.4% vs 5.7% ± 0.4%, P < 0.0001) and collagen disarray, accompanied by more severe ventricular stiffening (Young’s moduli = 360 ± 10 kPa vs 280 ± 43 kPa, P < 0.01, N ≥ 6/group). When establishing normal gut flora before surgery, germ-free mice had heart malfunctioning rescued (change of myocardial performance index = 15% ± 13% vs 120% ± 32% untreated, P < 0.05, N ≥ 5/group). The normal gut flora was profiled by third-generation 16S sequencing to acquire bacterial information with high accuracy, followed by PICRUSt analysis revealing that the microbes favored the production of short-chain fatty acids (SCFAs) (N ≥ 8/group). When supplemented with SCFA before surgery, ABX mice gained better cardiac outcomes (ejection fraction = 65% ± 2% vs 53% ± 3% untreated, P < 0.01, N ≥ 5/group). Cardiac fibroblasts treated with SCFA were less susceptible to TGF-β1-triggered fibrogenesis (COL1A1/GAPDH = 0.8 ± 0.3 vs 2.3 ± 0.3 untreated, P < 0.01, n ≥ 4/group). Conclusions: In conclusion, our study demonstrates firstly that gut microbiota-derived SCFAs manipulate heart mechanical functioning under stress potentially acting via cardiac fibroblasts. This provides new insights into the management of heart diseases through the gut microbiota.
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- 2022
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20. Abstract P3120: Cardio And Neurotoxicity Of Repurposed Anti-COVID-19 Drugs
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Martin Nicholson, Ching-Ying Huang, Jyun-Yuan Wang, Ting Chien-Yu, Yu-Che Cheng, Darien Chan, Yi-Chan Lee, Ching-Chuan Hsu, Cindy M Chang, Marvin L. Hsieh, Yuan-Yuan Cheng, Yi-Ling Lin, Chien-Hsiun Chen, Ying-Ta Wu, Timothy A Hacker, Joseph C Wu, Timothy Kamp, and Patrick C Hsieh
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Physiology ,Cardiology and Cardiovascular Medicine - Abstract
In December 2019, the novel coronavirus disease 2019 (COVID-19), caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) spread around the globe resulting in ~435 million confirmed cases and ~6 million related deaths as of March 2022, according to the World Health Organization. To combat COVID-19 quickly, there have been many attempts to repurpose current FDA-approved drugs or to revive old drugs with anti-viral properties. However, aside from the biological stress imposed by the virus, many of the current treatment options have been known to cause adverse drug reactions. We established a population-based human induced pluripotent stem cell drug screening platform to assess the toxicity of the first line of anti-COVID-19 drugs and to understand viral infection of cardiomyocytes and neurons. We found that iPSC-derived cardiomyocytes express the ACE2 receptor which correlated with a higher infection of the SARS-CoV-2 virus (r=0.86). However, ACE2 expression was undetectable in neurons which correlated with low infection of neurons. We then assessed the toxicity of anti-COVID-19 drugs and identified two cardiotoxic compounds (remdesivir and arbidol) and 4 neurotoxic compounds (arbidol, remdesivir, hydroxychloroquine, and chloroquine) which were validated by dose-response curves. These data show that this platform can quickly and easily be employed to further our understanding of cell-specific infection and identify drug toxicity of potential treatment options helping clinicians better decide on treatment options.
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- 2022
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21. Osteogenic differentiation of placenta-derived multipotent cells in vitro
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Chih-Chien Cheng, Chih-Ang Chung, Li-Chiu Su, Chih-Cheng Chien, and Yu-Che Cheng
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differentiation ,osteogenesis ,placenta-derived multipotent cells (PDMCs) ,Gynecology and obstetrics ,RG1-991 - Abstract
Objective: Stem cells offer great potential for clinical therapeutic use because of their ability to rejuvenate and to differentiate into numerous types of cells. We isolated multipotent cells from the human term placenta that were capable of differentiation into cells of all three germ layers. Materials and methods: We examined the ability of these placenta-derived multipotent cells (PDMCs) to differentiate into osteoblasts (OBs) or OB-like cells. The PDMCs were treated with osteogenic medium (OM) consisting of dexamethasone, β-glycerol phosphate, and ascorbic acid. At sequential time intervals (0 day, 3 days, 6 days, 9 days, and 12 days) we measured several parameters. These included alkaline phosphatase (ALP) activity, alizarin red staining (ARS) to measure calcium deposition, messenger RNA (mRNA) expressions of osteogenesis-related transcription factor (Cbfa1), and calcium coordination protein (osteocalcin). These variables were used as indicators of PDMC osteodifferentiation. Results: We showed that ALP activity in the early stage of differentiation and calcium deposition were both significantly increased in PDMCs after OM induction. Moreover, the Cbfa1 and osteocalcin gene expressions were upregulated. The results suggested that OM induced an osteodifferentiation potential in PDMCs. Conclusion: PDMC-derived osteocytes provide a useful model to evaluate the mechanisms of key biomolecules and bioengineering processes.
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- 2014
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22. Electrical Stimulation through Conductive Substrate to Enhance Osteo-Differentiation of Human Dental Pulp-Derived Stem Cells
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Yu-Che Cheng, Chien-Hsun Chen, Hong-Wei Kuo, Ting-Ling Yen, Ya-Yuan Mao, and Wei-Wen Hu
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human dental pulp stem cells ,substrate-mediated electrical stimulation ,direct current electric field ,osteo-differentiation ,bone morphogenesis proteins ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Human dental pulp-derived stem cells (hDPSCs) are promising cellular sources for bone healing. The acceleration of their differentiation should be beneficial to their clinical application. Therefore, a conductive polypyrrole (PPy)-made electrical stimulation (ES) device was fabricated to provide direct-current electric field (DCEF) treatment, and its effect on osteo-differentiation of hDPSCs was investigated in this study. To determine the optimal treating time, electrical field of 0.33 V/cm was applied to hDPSCs once for 4 h on different days after the osteo-induction. The alizarin red S staining results suggested that ES accelerated the mineralization rates of hDPSCs. The quantification analysis results revealed a nearly threefold enhancement in calcium deposition by ES at day 0, 2, and 4, whereas the promotion effect in later stages was in vain. To determine the ES-mediated signaling pathway, the expression of genes in the bone morphogenetic protein (BMP) family and related receptors were quantified using qPCR. In the early stages of osteo-differentiation, the mRNA levels of BMP2, BMP3, BMP4, and BMP5 were increased significantly in the ES groups, indicating that these genes were involved in the specific signaling routes induced by ES. We are the first using DCEF to improve the osteo-differentiation of hDPSCs, and our results promise the therapeutic applications of hDPSCs on cell-based bone tissue engineering.
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- 2019
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23. Cardio- and Neurotoxicity of Selected Anti-COVID-19 Drugs
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Martin W. Nicholson, Ching-Ying Huang, Jyun-Yuan Wang, Chien-Yu Ting, Yu-Che Cheng, Darien Z. H. Chan, Yi-Chan Lee, Ching-Chuan Hsu, Yu-Hung Hsu, Cindy M. C. Chang, Marvin L. Hsieh, Yuan-Yuan Cheng, Yi-Ling Lin, Chien-Hsiun Chen, Ying-Ta Wu, Timothy A. Hacker, Joseph C. Wu, Timothy J. Kamp, and Patrick C. H. Hsieh
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Drug Discovery ,Pharmaceutical Science ,Molecular Medicine - Abstract
Since December 2019, the novel coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has infected ~435 million people and caused ~6 million related deaths as of March 2022. To combat COVID-19, there have been many attempts to repurpose FDA-approved drugs or revive old drugs. However, many of the current treatment options have been known to cause adverse drug reactions. We employed a population-based drug screening platform using 13 human leukocyte antigen (HLA) homozygous human induced pluripotent cell (iPSC) lines to assess the cardiotoxicity and neurotoxicity of the first line of anti-COVID-19 drugs. We also infected iPSC-derived cells to understand the viral infection of cardiomyocytes and neurons. We found that iPSC-derived cardiomyocytes express the ACE2 receptor which correlated with a higher infection of the SARS-CoV-2 virus (r = 0.86). However, we were unable to detect ACE2 expression in neurons which correlated with a low infection rate. We then assessed the toxicity of anti-COVID-19 drugs and identified two cardiotoxic compounds (remdesivir and arbidol) and four neurotoxic compounds (arbidol, remdesivir, hydroxychloroquine, and chloroquine). These data show that this platform can quickly and easily be employed to further our understanding of cell-specific infection and identify drug toxicity of potential treatment options helping clinicians better decide on treatment options.
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- 2022
24. Utility of iPSC-Derived Cells for Disease Modeling, Drug Development, and Cell Therapy
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Martin W. Nicholson, Chien-Yu Ting, Darien Z. H. Chan, Yu-Che Cheng, Yi-Chan Lee, Ching-Chuan Hsu, Ching-Ying Huang, and Patrick C. H. Hsieh
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Pluripotent Stem Cells ,Drug Development ,Induced Pluripotent Stem Cells ,Cell- and Tissue-Based Therapy ,Animals ,General Medicine ,Regenerative Medicine - Abstract
The advent of induced pluripotent stem cells (iPSCs) has advanced our understanding of the molecular mechanisms of human disease, drug discovery, and regenerative medicine. As such, the use of iPSCs in drug development and validation has shown a sharp increase in the past 15 years. Furthermore, many labs have been successful in reproducing many disease phenotypes, often difficult or impossible to capture, in commonly used cell lines or animal models. However, there still remain limitations such as the variability between iPSC lines as well as their maturity. Here, we aim to discuss the strategies in generating iPSC-derived cardiomyocytes and neurons for use in disease modeling, drug development and their use in cell therapy.
- Published
- 2022
25. Surface-enhanced Raman scattering (SERS) spectroscopy on localized silver nanoparticle-decorated porous silicon substrate
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Yu-Che Cheng, You-Shan Zheng, Ya-Sen Sun, and Chia Wen Tsao
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Materials science ,Fabrication ,technology, industry, and agriculture ,Nanotechnology ,Hot spot (veterinary medicine) ,Substrate (electronics) ,Porous silicon ,Biochemistry ,Silver nanoparticle ,Analytical Chemistry ,symbols.namesake ,Etching (microfabrication) ,Electrochemistry ,symbols ,Environmental Chemistry ,Spectroscopy ,Raman scattering - Abstract
Surface-enhanced Raman scattering (SERS) spectroscopy is a rapid and non-destructive optical detection method that has been applied in various applications. Recently, three-dimensional (3D) substrate-based silicon nanostructures have been widely used as SERS substrates due to their high detection sensitivity, repeatability, and reusability. This paper uses a simple and low-cost electroless etching deposition process to generate silver nanoparticle-decorated porous silicon (Ag-PS) substrates. We propose a contact deposition process to generate localized Ag-PS (LocAg-PS) for SERS analysis. Due to the hydrophilic LocAg-PS pad on the hydrophobic PS background, the sample droplets self-aligned to the predefined LocAg-PS pads and condensed into a higher local concentration for high sensitivity SERS detection without extensive search for the hot spot. The effects of critical fabrication parameters and SERS analysis on the LocAg-PS surface were evaluated.
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- 2021
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26. Loss of the tumor suppressor BTG3 drives a pro-angiogenic tumor microenvironment through HIF-1 activation
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Yi-Ju Li, Sheau-Yann Shieh, Hsin-Yi Chiang, Hung-Wei Chang, Shang-Jung Cheng, and Yu-Che Cheng
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Vascular Endothelial Growth Factor A ,Cancer Research ,Angiogenesis ,Immunology ,Neovascularization, Physiologic ,Cell Cycle Proteins ,Article ,Cell Line ,Cellular and Molecular Neuroscience ,Transactivation ,Mice ,Neoplasms ,Coactivator ,Human Umbilical Vein Endothelial Cells ,Tumor Microenvironment ,Animals ,Humans ,lcsh:QH573-671 ,Tumour-suppressor proteins ,Oncogenesis ,Cellular Senescence ,Cell Proliferation ,Gene knockdown ,Tumor microenvironment ,Neovascularization, Pathologic ,Chemistry ,lcsh:Cytology ,Tumor Suppressor Proteins ,Cell Biology ,Fibroblasts ,Hypoxia-Inducible Factor 1, alpha Subunit ,Survival Analysis ,Gene Expression Regulation, Neoplastic ,Vascular endothelial growth factor A ,Tumor progression ,Cancer research ,Ectopic expression ,Gene Deletion ,Protein Binding - Abstract
B-cell translocation gene 3 (BTG3) is a member of the antiproliferative BTG gene family and is a downstream target of p53. Here, we show that senescence triggered by BTG3 depletion was accompanied by a secretome enriched with cytokines, growth factors, and matrix-remodeling enzymes, which could promote angiogenesis and cell scattering in vitro. We present evidence that at least part of these activities can be explained by elevated HIF-1α activity. Mechanistically, the BTG3 C-terminal domain competes with the coactivator p300 for binding the HIF-1α transactivation domain. The angiogenic promoting effect of BTG3 knockdown was largely diminished upon co-depletion of HIF-1α, indicating that HIF-1α is a major downstream target of BTG3 in the control of angiogenesis. In vivo, ectopic expression of BTG3 suppresses angiogenesis in xenograft tumors; and syngenic tumor growth and metastasis were enhanced in Btg3-null mice. Moreover, analysis of clinical datasets revealed that a higher BTG3/VEGFA expression ratio correlates with improved patient survival in a number of cancer types. Taken together, our findings highlight the non-autonomous regulation of tumor microenvironment by BTG3 while suppressing tumor progression.
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- 2020
27. Densenet Scheduling for Heterogeneous Parallel Systems
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PANGFENG LIU, Yu-Che Cheng, and Jan-Jan Wu
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
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28. Downregulated Calcium-Binding Protein S100A16 and HSP27 in Placenta-Derived Multipotent Cells Induce Functional Astrocyte Differentiation
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Yu-Che Cheng, Chi-Jung Huang, Wei-Chi Ku, Shu-Lin Guo, Lu-Tai Tien, Yih-Jing Lee, and Chih-Cheng Chien
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Proteomics ,Pregnancy ,Astrocytes ,Multipotent Stem Cells ,Placenta ,Calcium-Binding Proteins ,S100 Proteins ,HSP27 Heat-Shock Proteins ,Humans ,Female - Abstract
Little is known about genes that induce stem cells differentiation into astrocytes. We previously described that heat shock protein 27 (HSP27) downregulation is directly related to neural differentiation under chemical induction in placenta-derived multipotent stem cells (PDMCs). Using this neural differentiation cell model, we cross-compared transcriptomic and proteomic data and selected 26 candidate genes with the same expression trends in both omics analyses. Those genes were further compared with a transcriptomic database derived from Alzheimer’s disease (AD). Eighteen out of 26 candidates showed opposite expression trends between our data and the AD database. The mRNA and protein expression levels of those candidates showed downregulation of HSP27, S100 calcium-binding protein A16 (S100A16) and two other genes in our neural differentiation cell model. Silencing these four genes with various combinations showed that co-silencing HSP27 and S100A16 has stronger effects than other combinations for astrocyte differentiation. The induced astrocyte showed typical astrocytic star-shape and developed with ramified, stringy and filamentous processes as well as differentiated endfoot structures. Also, some of them connected with each other and formed continuous network. Immunofluorescence quantification of various neural markers indicated that HSP27 and S100A16 downregulation mainly drive PDMCs differentiation into astrocytes. Immunofluorescence and confocal microscopic images showed the classical star-like shape morphology and co-expression of crucial astrocyte markers in induced astrocytes, while electrophysiology and Ca2+ influx examination further confirmed their functional characteristics. In conclusion, co-silencing of S100A16 and HSP27 without chemical induction leads to PDMCs differentiation into functional astrocytes. Graphical abstract
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- 2021
29. Endothelial Cell Morphogenesis and Capillary-like Network Induced by Soluble and Bound VEGF in a Definite Biogel Composed of Collagen and Fibronectin
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Hsun Chiang, C. A. Chung, and Yu-Che Cheng
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Technology ,QH301-705.5 ,medicine.medical_treatment ,QC1-999 ,Cell ,Endothelial cell morphogenesis ,Umbilical vein ,chemistry.chemical_compound ,Tissue engineering ,vascularization ,morphology ,medicine ,General Materials Science ,Biology (General) ,Instrumentation ,QD1-999 ,Fluid Flow and Transfer Processes ,biology ,Process Chemistry and Technology ,Growth factor ,Physics ,General Engineering ,Engineering (General). Civil engineering (General) ,VEGF ,In vitro ,endothelial cells ,Computer Science Applications ,Cell biology ,Vascular endothelial growth factor ,Fibronectin ,Chemistry ,medicine.anatomical_structure ,chemistry ,biology.protein ,TA1-2040 ,capillary-like network - Abstract
In vitro culture of endothelial cells to form capillary-like networks is essential in tissue engineering. Vascular endothelial growth factor (VEGF) is one of the primary signal proteins stimulating blood vessel formation. This growth factor can be soluble in the medium or protein-bound to the substrate. However, less attention has been paid to distinguishing the specific stimulations by soluble and bound VEGF. We conducted a series of experiments to explore the respective effects of these two VEGF forms. An in-house synthesized biogel comprising a definite concentration of collagen and fibronectin was designed to cultivate human umbilical vein endothelial cells to form the capillary-like network. Collagen served as the primary substrate for cell attachment. Fibronectin provided the surface to bind soluble VEGF in the culture medium to create the bound VEGF. The experiment of adding VEGF-blocking-peptide was conducted to prevent the formation of VEGF bound to the fibronectin domains, to distinguish the respective effects of the soluble and bound VEGF. With the in-house biogel of definite components, we were able to clarify the different roles of soluble and bound VEGF. The results indicated that the soluble VEGF promptly induced the cells to change from round to elongated shape, which contributed to forming network cords. Simultaneously, the bound VEGF provided long-term stimulation, causing the cells to migrate and differentiate into the final capillary-like network.
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- 2021
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30. Supplementation of Probiotic
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Yen-Chieh, Wang, Wei-Chi, Ku, Chih-Yi, Liu, Yu-Che, Cheng, Chih-Cheng, Chien, Kang-Wei, Chang, and Chi-Jung, Huang
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bladder cancer-associated protein ,apoptosis ,urothelial bladder cancer ,urologic and male genital diseases ,butyrate ,Butyricicoccus pullicaecorum ,female genital diseases and pregnancy complications ,Article - Abstract
In bladder cancer, urothelial carcinoma is the most common histologic subtype, accounting for more than 90% of cases. Pathogenic effects due to the dysbiosis of gut microbiota are localized not only in the colon, but also in regulating bladder cancer distally. Butyrate, a short-chain fatty acid produced by gut microbial metabolism, is mainly studied in colon diseases. Therefore, the resolution of the anti-cancer effects of butyrate-producing microbes on bladder urothelial cells and knowledge of the butyrate-responsive molecules must have clinical significance. Here, we demonstrate a correlation between urothelial cancer of the bladder and Butyricicoccus pullicaecorum. This butyrate-producing microbe or their metabolite, butyrate, mediated anti-cancer effects on bladder urothelial cells by regulating cell cycle, cell growth, apoptosis, and gene expression. For example, a tumor suppressor against urothelial cancer of the bladder, bladder cancer-associated protein, was induced in butyrate-treated HT1376 cells, a human urinary bladder cancer cell line. In conclusion, urothelial cancer of the bladder is a significant health problem. To improve the health of bladder urothelial cells, supplementation of B. pullicaecorum may be necessary and can further regulate butyrate-responsive molecular signatures.
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- 2021
31. MicroRNA let-7-TGFBR3 signalling regulates cardiomyocyte apoptosis after infarction
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Patrick C.H. Hsieh, Li-Wei Liu, Timothy A. Hacker, Yen-Wen Wu, Timothy J. Kamp, Ming-Hsien Chiang, Christopher Y.T. Yen, Yuh-Lien Chen, Oi Kuan Choong, Wen-chang Lin, Lung-Chun Lin, Tien-Jui Tsang, Menq-Rong Wu, Sung-Chou Li, Yu-Che Cheng, and Chen-Yun Chen
- Subjects
0301 basic medicine ,Research paper ,Time Factors ,Swine ,p38 mitogen-activated protein kinases ,Genetic Vectors ,Myocardial Infarction ,Infarction ,Apoptosis ,p38 Mitogen-Activated Protein Kinases ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Gene therapy ,Transduction, Genetic ,microRNA ,Medicine ,Animals ,Humans ,Myocytes, Cardiac ,Myocardial infarction ,Gene knockdown ,Ejection fraction ,Ventricular Remodeling ,business.industry ,General Medicine ,Genetic Therapy ,medicine.disease ,TGFBR3 ,MicroRNA let-7 ,Disease Models, Animal ,MicroRNAs ,030104 developmental biology ,Gene Expression Regulation ,Echocardiography ,030220 oncology & carcinogenesis ,Heart failure ,Cancer research ,Proteoglycans ,business ,Receptors, Transforming Growth Factor beta ,Biomarkers ,Signal Transduction - Abstract
Background Myocardial infarction (MI) is a life-threatening disease, often leading to heart failure. Defining therapeutic targets at an early time point is important to prevent heart failure. Methods MicroRNA screening was performed at early time points after MI using paired samples isolated from the infarcted and remote myocardium of pigs. We also examined the microRNA expression in plasma of MI patients and pigs. For mechanistic studies, AAV9-mediated microRNA knockdown and overexpression were administrated in mice undergoing MI. Findings MicroRNAs let-7a and let-7f were significantly downregulated in the infarct area within 24 h post-MI in pigs. We also observed a reduction of let-7a and let-7f in plasma of MI patients and pigs. Inhibition of let-7 exacerbated cardiomyocyte apoptosis, induced a cardiac hypertrophic phenotype, and resulted in worsened left ventricular ejection fraction. In contrast, ectopic let-7 overexpression significantly reduced those phenotypes and improved heart function. We then identified TGFBR3 as a target of let-7, and found that induction of Tgfbr3 in cardiomyocytes caused apoptosis, likely through p38 MAPK activation. Finally, we showed that the plasma TGFBR3 level was elevated after MI in plasma of MI patients and pigs. Interpretation Together, we conclude that the let-7-Tgfbr3-p38 MAPK signalling plays an important role in cardiomyocyte apoptosis after MI. Furthermore, microRNA let-7 and Tgfbr3 may serve as therapeutic targets and biomarkers for myocardial damage. Fund Ministry of Science and Technology, National Health Research Institutes, Academia Sinica Program for Translational Innovation of Biopharmaceutical Development-Technology Supporting Platform Axis, Thematic Research Program and the Summit Research Program, Taiwan.
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- 2019
32. MicroRNA let-7-TGFBR3 signalling regulates cardiomyocyte apoptosis after infarctionResearch in Context section
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Chen-Yun Chen, Oi Kuan Choong, Li-Wei Liu, Yu-Che Cheng, Sung-Chou Li, Christopher Y.T. Yen, Menq-Rong Wu, Ming-Hsien Chiang, Tien-Jui Tsang, Yen-Wen Wu, Lung-Chun Lin, Yuh-Lien Chen, Wen-Chang Lin, Timothy A. Hacker, Timothy J. Kamp, and Patrick C.H. Hsieh
- Subjects
lcsh:R5-920 ,lcsh:R ,lcsh:Medicine ,lcsh:Medicine (General) - Abstract
Background: Myocardial infarction (MI) is a life-threatening disease, often leading to heart failure. Defining therapeutic targets at an early time point is important to prevent heart failure. Methods: MicroRNA screening was performed at early time points after MI using paired samples isolated from the infarcted and remote myocardium of pigs. We also examined the microRNA expression in plasma of MI patients and pigs. For mechanistic studies, AAV9-mediated microRNA knockdown and overexpression were administrated in mice undergoing MI. Findings: MicroRNAs let-7a and let-7f were significantly downregulated in the infarct area within 24 h post-MI in pigs. We also observed a reduction of let-7a and let-7f in plasma of MI patients and pigs. Inhibition of let-7 exacerbated cardiomyocyte apoptosis, induced a cardiac hypertrophic phenotype, and resulted in worsened left ventricular ejection fraction. In contrast, ectopic let-7 overexpression significantly reduced those phenotypes and improved heart function. We then identified TGFBR3 as a target of let-7, and found that induction of Tgfbr3 in cardiomyocytes caused apoptosis, likely through p38 MAPK activation. Finally, we showed that the plasma TGFBR3 level was elevated after MI in plasma of MI patients and pigs. Interpretation: Together, we conclude that the let-7-Tgfbr3-p38 MAPK signalling plays an important role in cardiomyocyte apoptosis after MI. Furthermore, microRNA let-7 and Tgfbr3 may serve as therapeutic targets and biomarkers for myocardial damage. Fund: Ministry of Science and Technology, National Health Research Institutes, Academia Sinica Program for Translational Innovation of Biopharmaceutical Development-Technology Supporting Platform Axis, Thematic Research Program and the Summit Research Program, Taiwan. Keywords: MicroRNA let-7, TGFBR3, Gene therapy, Biomarkers
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- 2019
33. Population-based high-throughput toxicity screen of human iPSC-derived cardiomyocytes and neurons
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Ching Ying Huang, Martin W. Nicholson, Jyun Yuan Wang, Chien Yu Ting, Ming Heng Tsai, Yu Che Cheng, Chun Lin Liu, Darien Z.H. Chan, Yi Chan Lee, Ching Chuan Hsu, Yu Hung Hsu, Chiou Fong Yang, Cindy M.C. Chang, Shu Chian Ruan, Po Ju Lin, Jen Hao Lin, Li Lun Chen, Marvin L. Hsieh, Yuan Yuan Cheng, Wan Tseng Hsu, Yi Ling Lin, Chien Hsiun Chen, Yu Hsiang Hsu, Ying Ta Wu, Timothy A. Hacker, Joseph C. Wu, Timothy J. Kamp, and Patrick C.H. Hsieh
- Subjects
Neurons ,Mice ,Drug-Related Side Effects and Adverse Reactions ,Induced Pluripotent Stem Cells ,Animals ,Humans ,Cell Differentiation ,Myocytes, Cardiac ,General Biochemistry, Genetics and Molecular Biology ,Cardiotoxicity ,Cells, Cultured - Abstract
In this study, we establish a population-based human induced pluripotent stem cell (hiPSC) drug screening platform for toxicity assessment. After recruiting 1,000 healthy donors and screening for high-frequency human leukocyte antigen (HLA) haplotypes, we identify 13 HLA-homozygous "super donors" to represent the population. These "super donors" are also expected to represent at least 477,611,135 of the global population. By differentiating these representative hiPSCs into cardiomyocytes and neurons we show their utility in a high-throughput toxicity screen. To validate hit compounds, we demonstrate dose-dependent toxicity of the hit compounds and assess functional modulation. We also show reproducible in vivo drug toxicity results using mouse models with select hit compounds. This study shows the feasibility of using a population-based hiPSC drug screening platform to assess cytotoxicity, which can be used as an innovative tool to study inter-population differences in drug toxicity and adverse drug reactions in drug discovery applications.
- Published
- 2021
34. Hydrostatic pressure facilitates calcium deposition and osteogenic gene expression in the osteoblastic differentiation of placenta-derived multipotent cells
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Chih-Chien Cheng, Chih-Ang Chung, Chih-Ju Chang, Yu-Che Cheng, Chi-Jung Huang, Chih-Cheng Chien, and Hsi-Ting Lin
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Osteogenesis ,Pregnancy ,Placenta ,Hydrostatic Pressure ,Obstetrics and Gynecology ,Gene Expression ,Humans ,Calcium ,Female - Abstract
We tested the osteoblastic differentiation effects caused by physical stimulation such as hydrostatic pressure using placenta-derived multipotent cells.The placenta-derived multipotent cells (PDMCs) were treated with osteogenic medium to induce PDMCs differentiation into osteoblast-like cells. The induced PDMCs were stimulated using hydrostatic pressure at a magnitude of 30 kPa for 1 h/day for up to 12 days. The calcium deposition monitored by Alizarin Red staining and the calcium content of each experimental group were quantified.The results demonstrated both the calcium deposition and concentration were elevated through hydrostatic pressure stimulation. Moreover, in order to indicate of PDMC osteodifferentiation, RT-qPCR analysis were performed and mRNA expression of osteoblast differentiation markers (type I collagen, alkaline phosphatase, RUNX2, and BGLAP), the bone morphogenetic protein family (BMP1-7) and BMP receptors (BMPR1A, BMPR1B, and BMPR2) were examined. Among them, the mRNA levels of RUNX2, COL1A1, BMP1, BMP3, and BMPR1A increased significantly in the hydrostatic-pressure-stimulated groups, whereas BGLAP, ALP, BMP2, BMP6, BMPR1B, and BMPR2 exhibited a slight upregulation between the control and experimental groups, indicating the specific signal route induced by hydrostatic pressure on PDMCs.Our results revealed the beneficial effects of stem cells stimulated using hydrostatic pressure, which could enhance calcium deposition considerably and facilitate osteodifferentiation, and the results may be applied to tissue regeneration in the near future.
- Published
- 2021
35. The Development of Polylactic Acid/Multi-Wall Carbon Nanotubes/Polyethylene Glycol Scaffolds for Bone Tissue Regeneration Application
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Wei Wen Hu, Shih Feng Wang, Yun Chung Wu, and Yu Che Cheng
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Polymers and Plastics ,Composite number ,Organic chemistry ,osteogenic differentiation ,dexamethasone ,02 engineering and technology ,Polyethylene glycol ,Carbon nanotube ,010402 general chemistry ,Bone tissue ,01 natural sciences ,Article ,law.invention ,chemistry.chemical_compound ,QD241-441 ,Polylactic acid ,law ,PEG ratio ,medicine ,polycyclic compounds ,drug-loaded scaffolds ,polylactic acid ,bone tissue engineering ,electrospinning ,technology, industry, and agriculture ,General Chemistry ,021001 nanoscience & nanotechnology ,Electrospinning ,0104 chemical sciences ,medicine.anatomical_structure ,chemistry ,Chemical engineering ,Nanofiber ,multi-wall carbon nanotubes ,polyethylene glycol ,0210 nano-technology ,hormones, hormone substitutes, and hormone antagonists - Abstract
Composite electrospun fibers were fabricated to develop drug loaded scaffolds to promote bone tissue regeneration. Multi-wall carbon nanotubes (MWCNTs) were incorporated to polylactic acid (PLA) to strengthen electrospun nanofibers. To modulate drug release behavior, different ratios of hydrophilic polyethylene glycol (PEG) were added to composite fibers. Glass transition temperature (Tg) can be reduced by the incorporated PEG to enhance the ductility of the nanofibers. The SEM images and the MTT results demonstrated that composite fibers are suitable scaffolds for cell adhesion and proliferation. Dexamethasone (DEX), an osteogenic inducer, was loaded to PLA/MWCNT/PEG fibers. The surface element analysis performed by XPS showed that fluorine of DEX in pristine PLA fibers was much higher than those of the MWCNT-containing fibers, suggesting that the pristine PLA fibers mainly load DEX on their surfaces, whereas MWCNTs can adsorb DEX with evenly distribution in nanofibers. Drug release experiments demonstrated that the release profiles of DEX were manipulated by the ratio of PEG, and that the more PEG in the nanofibers, the faster DEX was released. When rat bone marrow stromal cells (rBMSCs) were seeded on these nanofibers, the Alizarin Red S staining and calcium quantification results demonstrated that loaded DEX were released to promote osteogenic differentiation of rBMSCs and facilitate mineralized tissue formation. These results indicated that the DEX-loaded PLA/MWCNT/PEG nanofibers not only enhanced mechanical strength, but also promoted osteogenesis of stem cells via the continuous release of DEX. The nanofibers should be a potential scaffold for bone tissue engineering application.
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- 2021
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36. The requirements of nucleic acid test for COVID-19 during public health emergency: Current regulatory in Taiwan, Singapore, and the United States.
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Yin-Ting Fan, Jin-Yu Lee, Yu-Che Cheng, Hsin-Hui Lin, Chia-Hung Chien, Pei-Weng Tu, and Hui-Wen Chung
- Subjects
NUCLEIC acids ,COVID-19 testing ,BREAKTHROUGH infections ,COVID-19 pandemic ,DISEASE management - Abstract
In mid-2022, the COVID-19 cases have reached close to 562 million, but its overall infection rate is hard to confirm. Even with effective vaccines, break-through infections with new variants occur, and safe and reliable testing still plays a critical role in isolation of infected individuals and in control of an outbreak of a COVID-19 pandemic. In response to this urgent need, the diagnostic tests for COVID-19 are rapidly evolving and improving these days. The health authorities of many countries issued requirements for detecting SARS-CoV-2 diagnosis tests during the pandemic and have timely access to these tests to ensure safety and effectiveness. In this study, we compared the requirements of EUA in Taiwan, Singapore, and the United States. For the performance evaluations of nucleic acid extraction, inclusivity, limit of detection (LoD), cross-reactivity, interference, cutoff, and stability, the requirements are similar in the three countries. The use of natural clinical specimens is needed for clinical evaluation in Taiwan and the United States. However, carry-over and cross-contamination studies can be exempted in Taiwan and the United States but are required in Singapore. This review outlines requirements and insight to guide the test developers on the development of IVDs. Considering the rapidly evolving viruses and severe pandemic of COVID-19, timely and accurate diagnostic testing is imperative to the management of diseases. As noted above, the performance requirements for SARS-CoV-2 nucleic acid tests are similar between Taiwan, Singapore and the United States. The differences are mainly in two points: the recommended microorganisms for cross-reactivity study, and the specimen requirement for clinical evaluation. This study provides an overview of current requirements of SARS-CoV-2 nucleic acid tests in Taiwan, Singapore, and the United States. [ABSTRACT FROM AUTHOR]
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- 2022
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37. Determination of CHK1 Cellular Localization by Immunofluorescence Microscopy
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Yu-Che, Cheng and Sheau-Yann, Shieh
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Protein Transport ,Microscopy, Confocal ,Checkpoint Kinase 1 ,Fluorescent Antibody Technique ,Humans ,HCT116 Cells - Abstract
Many proteins involved in the DNA damage pathway shuttle between the cytoplasm and nucleus, and their localizations are important for functions. In that regard, immunofluorescence microscopy has been widely used to delineate the temporal and spatial regulation of proteins. Here, we describe an unconventional method for studying the cellular localization of CHK1, a cell cycle checkpoint kinase that undergoes shuttling from the cytoplasm to the nucleus in response to genotoxic stress. In this study, we included an acid extraction step to better reveal the nuclear localization of CHK1.
- Published
- 2021
38. Magnolol, A Novel Antagonist of Thrombin and PAR-1, Inhibits Thrombin-Induced Connective Tissue Growth Factor (CTGF) Expression in Vascular Smooth Muscle Cells and Ameliorate Pathogenesis of Restenosis in Rats
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Ting Lin Yen, Chia Ti Tsai, Wan-Jung Lu, Chun Ming Shih, Chuang Ye Hong, Wen Chin Ko, Yi Ling Chen, Kai Cheng Hsu, Yu Che Cheng, and Tony Eight Lin
- Subjects
0301 basic medicine ,Neointima ,Vascular smooth muscle ,medicine.medical_treatment ,Connective tissue ,PAR-1 ,magnolol ,thrombin inhibitor ,CTGF ,restenosis ,030204 cardiovascular system & hematology ,Pharmacology ,lcsh:Technology ,lcsh:Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Thrombin ,Restenosis ,medicine ,General Materials Science ,Instrumentation ,lcsh:QH301-705.5 ,Fluid Flow and Transfer Processes ,lcsh:T ,Process Chemistry and Technology ,Growth factor ,General Engineering ,medicine.disease ,Magnolol ,lcsh:QC1-999 ,Computer Science Applications ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,lcsh:Biology (General) ,lcsh:QD1-999 ,lcsh:TA1-2040 ,lcsh:Engineering (General). Civil engineering (General) ,lcsh:Physics ,medicine.drug - Abstract
Restenosis and destructive vascular remodeling are the main reasons for treatment failure in patients undergoing percutaneous coronary intervention (PCI). In this study, we explored the efficacy of magnolol (a traditional Chinese medicine) in the treatment of restenosis. The results of this study showed that the activities of thrombin and PAR-1 (protease-activated receptor 1) were significantly decreased by the treatment of magnolol. Based on protein docking analysis, magnolol exhibits its potential to bind to the PAR-1 active site. In addition, thrombin-induced connective tissue growth factor (CTGF) expression and the upstream of CTGF such as JNK-1 (but not JNK-2), c-Jun, and AP-1 were distinctly inhibited by magnolol (50 μM) in vascular smooth muscle cells (VSMC). For the functional assay, magnolol (50 μM) significantly inhibited the migration of VSMC, and rats treated with magnolol (13 mg/kg/day) after balloon angioplasty has observed a significant reduction in the formation of common arterial neointima. In conclusion, we identified a novel mechanism by which magnolol acts as the thrombin activity inhibitor and may be the PAR-1 antagonist. In accordance with these functions, magnolol could decrease thrombin-induced CTGF expression in VSMCs via PAR-1/JNK-1/AP-1 signaling.
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- 2020
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39. Drug-selected population in melanoma A2058 cells as melanoma stem-like cells retained angiogenic features – the potential roles of heparan-sulfate binding ANGPTL4 protein
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ShihSheng Jiang, TingTing Tseng, Chia-Yu Shih, Shao-Chen Lee, ChiaoHui Hsieh, and Yu-Che Cheng
- Subjects
Aging ,education.field_of_study ,Cell growth ,Melanoma ,Population ,Cancer ,Cell Biology ,Angiopoietin-like 4 Protein ,Biology ,medicine.disease ,Stem cell marker ,Side population ,Cancer research ,medicine ,Heparan sulfate binding ,education - Abstract
Malignant cancer may contain highly heterogeneous populations of cells, including stem-like cells which were resistant to chemotherapy agents, radiation, mechanical stress, and immune surveillance. The characterization of these specific subpopulations might be critical to develop novel strategy to remove malignant tumors. We selected and enriched small population of human melanoma A2058 cells by repetitive selection cycles (selection, restoration, and amplification). These subpopulation of melanoma cells persisted the characteristics of slower cell proliferation, enhanced drug-resistance, elevated percentage of side population as analyzed by Hoechst33342 exclusion, in vitro sphere formation, and in vivo xenograft tumor formation by small amount of tumor cells. The selected populations would be melanoma stem-like cells with high expression of stem cell markers and altered kinase activation. Microarray and bioinformatics analysis highlighted the high expression of angiopoietin-like 4 protein in drug-selected melanoma stem-like cells. Further validation by specific shRNA demonstrated the role of angiopoietin-like 4 protein in drug-selected subpopulation associated with enhanced drug-resistance, sphere formation, reduced kinase activation, in vitro tube-forming ability correlated with heparan-sulfate proteoglycans. Our finding would be applicable to explore the mechanism of melanoma stemness and use angiopoietin-like 4 as potential biomarkers to identify melanoma stem-like cells.
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- 2020
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40. Potential synergistic effects of sorafenib and CP-31398 for treating anaplastic thyroid cancer with p53 mutations
- Author
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Yu Che Cheng, Jiin‑Torng Wu, Ching‑Ling Lin, Chi‑Jung Huang, Chih Cheng Chien, and Yung‑Chuan Sung
- Subjects
Sorafenib ,Cancer Research ,Oncogene ,business.industry ,medicine.medical_treatment ,Cancer ,Articles ,Cell cycle ,medicine.disease ,Molecular medicine ,Targeted therapy ,Oncology ,medicine ,Cancer research ,Anaplastic thyroid cancer ,business ,Thyroid cancer ,medicine.drug - Abstract
Thyroid cancer is the most commonly diagnosed endocrine cancer. Anaplastic thyroid cancer (ATC) is the most aggressive type of thyroid cancer and has a poor prognosis. Loss of p53 function has been reported to lead to poorly differentiated thyroid tumors; therefore, mutant p53 protein can be considered a crucial therapeutic target in patients with ATC. Sorafenib, a multi-kinase inhibitor, has been approved for the treatment of metastatic and differentiated thyroid cancer. Combined targeted therapy, including sorafenib, may be clinically significant for patients with ATC harboring p53 mutations. In the present study, CP-31398, a p53-restoring agent, was used to improve the therapeutic efficacy of sorafenib in SW579 cells, an ATC cell line harboring p53 mutations. The molecular function of CP-31398 was evaluated using western blot analysis and a luciferase reporter assay. The decreased viability of SW579 cells, following CP-31398 treatment, was augmented by sorafenib, and CP-31398 enhanced the antimitogenic effect of sorafenib; thus, sorafenib and CP-31398 synergistically inhibited the growth of SW579 cells. These results indicate a potential clinical application of CP-31398 for patients with ATC harboring p53 abnormalities, since these individuals generally respond poorly to sorafenib alone.
- Published
- 2020
41. A fast universal immobilization of immunoglobulin G at 4 °C for the development of array-based immunoassays.
- Author
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Shu-Lin Guo, Po-Chung Chen, Ming-Shuo Chen, Yu-Che Cheng, Jun-Mu Lin, Hoong-Chien Lee, and Chien-Sheng Chen
- Subjects
Medicine ,Science - Abstract
To maintain the antibody activity and enhance performance of array-based immunoassays, protein G was used to allow a shorter duration of immunoglobulin G immobilization at 4 °C, with the antibody placed in the appropriate orientation. The multiplexed detection of six pain-related message molecules (PRMMs) was used as examples for the development of array-based immunoassays: substance P, calcitonin gene-related peptide, nerve growth factor, brain-derived neurotrophic factor, tumor necrosis factor-α, and β-endorphin. Protein G- and non-protein G-coated slides were tested. Compared to non-protein G immunoassays, protein G shortened the antibody immobilization time at 4 °C from overnight to 2 hours. Only protein G-facilitated immunoassays succeeded in simultaneously detecting all six PRMMs with high specificity. Dose-response curves showed that the limits of detection of the protein G-multiplexed immunoassays for the PRMMs was approximately 164, 167, 120, 60, 80, and 92 pg/ml, respectively. Thus, protein G effectively shortens the duration of antibody immobilization at 4 °C, allowing the use of sensitive array-based immunoassays for the simultaneous detection of PRMMs.
- Published
- 2012
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42. Melatonin regulation of transcription in the reversal of morphine tolerance: Microarray analysis of differential gene expression
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Ya‑Yuan Mao, Yu‑Che Cheng, Yen‑Tseng Sung, Ru‑Yin Tsai, Chih-Shung Wong, Tzu‑Yi Tu, and Ing‑Jung Chen
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0301 basic medicine ,Male ,Microarray ,Transcription, Genetic ,Down-Regulation ,melatonin ,Pharmacology ,Biology ,Melatonin ,03 medical and health sciences ,Pineal gland ,0302 clinical medicine ,morphine tolerance ,Gene expression ,Genetics ,medicine ,Animals ,Drug Interactions ,Molecular Targeted Therapy ,Rats, Wistar ,Injections, Spinal ,Regulator gene ,Morphine ,Microarray analysis techniques ,Central Nervous System Depressants ,General Medicine ,Articles ,Drug Tolerance ,Microarray Analysis ,Rats ,Up-Regulation ,Analgesics, Opioid ,030104 developmental biology ,medicine.anatomical_structure ,Hyperalgesia ,gene expression ,medicine.symptom ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Tolerance and associated hyperalgesia induced by long‑term morphine administration substantially restrict the clinical use of morphine in pain treatment. Melatonin, a neurohormone released by the pineal gland, has been demonstrated to attenuate anti‑nociceptive morphine tolerance. The present study investigates differentially expressed genes in the process of morphine tolerance and altered gene expression subsequent to melatonin treatment in chronic morphine‑infused ratspinal cords. Morphine tolerance was induced in male Wistar rats by intrathecal morphine infusion (the MO group). Melatonin (the MOMa group) was administered to overcome the effects derived by morphine. The mRNA collected from L5‑S3 of the spinal cord was extracted and analysed by rat expression microarray. Principal component analysis and clustering analysis revealed that the overall gene profiles were different in morphine and melatonin treatments. Subsequent to Gene Ontology analysis, the biological processes of differentially expressed genes of MO and MOMa compared with the control group were constructed. Furthermore, a panel of genes exclusively expressed following melatonin treatment and another panel of genes with inverse expression between the MO and MOMa group were also established. Subsequent to PANTHER pathway analysis, a group of genes with inverse expression following melatonin administrated compared with morphine alone were identified. The expression levels of genes of interest were also confirmed using a reverse transcription‑quantitative polymerase chain reaction. The gene panel that was constructed suggests a potential signaling pathway in morphine tolerance development and is valuable for investigating the mechanism of morphine tolerance and the regulatory gene profiles of melatonin treatment. These results may contribute to the discovery of potential drug targets in morphine tolerance treatments in the future.
- Published
- 2018
43. Exploiting Sensed Radio Strength and Precipitation for Improved Distance Estimation
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Yu-Che Cheng, Shih-Hau Fang, and Ying-Ren Chien
- Subjects
business.industry ,Computer science ,Attenuation ,Estimator ,020206 networking & telecommunications ,020302 automobile design & engineering ,02 engineering and technology ,Upper and lower bounds ,Radio propagation ,0203 mechanical engineering ,Transmission (telecommunications) ,0202 electrical engineering, electronic engineering, information engineering ,Wireless ,Path loss ,Precipitation ,Electrical and Electronic Engineering ,business ,Instrumentation ,Algorithm ,Physics::Atmospheric and Oceanic Physics - Abstract
The received signal strengths (RSSs) of wireless radios are susceptible to environmental dynamics, such as weather conditions, which can severely degrade the performance of RSS-based distance estimators. This paper proposes an enhanced RSS-based distance estimator that accounts for precipitation. The rain attenuation effect is incorporated into the path loss model to derive an analytical expression for maximum-likelihood-based distance estimation by using an iterative form of Newton’s method. In addition, the Cramer–Rao lower bound for the proposed distance estimator is proposed. This study performed experiments on the mobile networks at a campus, sensing the actual RSS using smartphones and deploying local weather stations to record transmission conditions. This is a pioneer work to overcome the rain attenuation problems and real measurements verify the effectiveness of an RSS-based distance estimator. Simulation and experimental results indicated that the proposed algorithm provides robust distance estimation during the periods of precipitation. The parameters of radio propagation and rain rate models can be extracted offline. With these parameters and the real-time measured RSSs and rain rate, our proposed distance estimation method achieves an 85%–90% error reduction rate over the conventional approach.
- Published
- 2018
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44. Deubiquitinating enzyme USP3 controls CHK1 chromatin association and activation
- Author
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Yu-Che Cheng and Sheau-Yann Shieh
- Subjects
0301 basic medicine ,animal structures ,genetic processes ,environment and public health ,Genomic Instability ,Deubiquitinating enzyme ,Histones ,03 medical and health sciences ,Ubiquitin ,Humans ,CHEK1 ,Phosphorylation ,Kinase activity ,Protein kinase A ,Multidisciplinary ,biology ,Kinase ,Chemistry ,Ubiquitination ,Biological Sciences ,Chromatin ,Cell biology ,Enzyme Activation ,enzymes and coenzymes (carbohydrates) ,030104 developmental biology ,Histone ,Checkpoint Kinase 1 ,biology.protein ,Ubiquitin-Specific Proteases ,biological phenomena, cell phenomena, and immunity ,Protein Processing, Post-Translational ,DNA Damage ,HeLa Cells ,Signal Transduction - Abstract
Checkpoint kinase 1 (CHK1), a Ser/Thr protein kinase, is modified by the K63-linked ubiquitin chain in response to genotoxic stress, which promotes its nuclear localization, chromatin association, and activation. Interestingly, this bulky modification is linked to a critical residue, K132, at the kinase active site. It is unclear how this modification affects the kinase activity and how it is removed to enable the release of CHK1 from chromatin. Herein, we show that the K63-linked ubiquitin chain at CHK1's K132 residue has an inhibitory effect on the kinase activity. Furthermore, we demonstrate that this modification can be removed by ubiquitin-specific protease 3 (USP3), a deubiquitinating enzyme that targets K63-linked ubiquitin chains. Wild-type USP3, but not the catalytically defective or nuclear localization sequence-deficient mutants, reduced CHK1 K63-linked ubiquitination. Conversely, USP3 knockdown elevated K63-linked ubiquitination of the kinase, leading to prolonged CHK1 chromatin association and phosphorylation. Paradoxically, by removing the bulky ubiquitin chain at the active site, USP3 also increased the accessibility of CHK1 to its substrates. Thus, our findings on the dual roles of USP3 (namely, one to release CHK1 from the chromatin and the other to open up the active site) provide further insights into the regulation of CHK1 following DNA damage.
- Published
- 2018
- Full Text
- View/download PDF
45. Generation of 2 induced pluripotent stem cell lines derived from patients with Parkinson's disease carrying LRRK2 G2385R variant
- Author
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Patrick C.H. Hsieh, Chin-Hsien Lin, Ching-Ying Huang, Ming-Ching Ho, Yu-Che Cheng, Shih-Han Syu, Han-I Lin, Huai-En Lu, and Yu-Hung Hsu
- Subjects
0301 basic medicine ,Adult ,Male ,Parkinson's disease ,Induced Pluripotent Stem Cells ,Cell Culture Techniques ,Germ layer ,Biology ,Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 ,Peripheral blood mononuclear cell ,Cell Line ,03 medical and health sciences ,medicine ,Humans ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,Base Sequence ,Neurodegeneration ,Reproducibility of Results ,Parkinson Disease ,Cell Biology ,General Medicine ,Middle Aged ,medicine.disease ,Embryonic stem cell ,LRRK2 ,nervous system diseases ,030104 developmental biology ,lcsh:Biology (General) ,Mutation ,Cancer research ,Cellular model ,Developmental Biology - Abstract
Leucine rich repeat kinase (LRRK2) is the most prevalent genetic cause for Parkinson's disease. LRRK2 p.G2385R is an Asian specific genetic risk factor for sporadic Parkinson's disease. We generated two induced pluripotent stem cells (iPSCs), IBMS-iPSC-018-09 and IBMS-iPSC-020-01, from the peripheral blood mononuclear cells of two patients carrying LRRK2 p.G2385R variant by using the Sendai-virus delivery system. These iPSCs had a normal karyotype and exhibited pluripotency, such as an embryonic stem cell-like morphology, expression of pluripotent markers, and capacity to differentiate into three germ layers. This cellular model will provide a platform for pathophysiological studies of neurodegeneration in Parkinson's disease.
- Published
- 2018
46. Generation of an induced pluripotent stem cell (iPSC) line from a 40-year-old patient with the A8344G mutation of mitochondrial DNA and MERRF (myoclonic epilepsy with ragged red fibers) syndrome
- Author
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Patrick C.H. Hsieh, Yu-Hung Hsu, Ming-Ching Ho, Yen-Chun Chen, Yau-Huei Wei, Huai-En Lu, Cheng-Hao Wen, Chia-Ling Tsai, Ching-Ying Huang, Yu-Ting Wu, Yi-Chao Hsu, Hui-Wen Ko, and Yu-Che Cheng
- Subjects
0301 basic medicine ,Adult ,Mitochondrial DNA ,Induced Pluripotent Stem Cells ,Biology ,medicine.disease_cause ,DNA, Mitochondrial ,03 medical and health sciences ,medicine ,Humans ,Myopathy ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,Cells, Cultured ,Mutation ,Transition (genetics) ,Cell Biology ,General Medicine ,medicine.disease ,Flow Cytometry ,Molecular biology ,MERRF Syndrome ,030104 developmental biology ,lcsh:Biology (General) ,Karyotyping ,Myoclonic epilepsy ,Female ,medicine.symptom ,Reprogramming ,Myoclonus ,Developmental Biology - Abstract
Mitochondrial defects are associated with clinical manifestations from common diseases to rare genetic disorders. Myoclonus epilepsy associated with ragged-red fibers (MERRF) syndrome results from an A to G transition at nucleotide position 8344 in the tRNALys gene of mitochondrial DNA (mtDNA) and is characterized by myoclonus, myopathy and severe neurological symptoms. In this study, Sendai reprogramming method was used to generate an iPS cell line carrying the A8344G mutation of mtDNA from a MERRF patient. This patient-specific iPSC line expressed pluripotent stem cell markers, possessed normal karyotype, and displayed the capability to differentiate into mature cells in three germ layers.
- Published
- 2018
47. Ganoderma microsporum immunomodulatory protein induces apoptosis and potentiates mitomycin C‐induced apoptosis in urinary bladder urothelial carcinoma cells
- Author
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Yu-Che Cheng, Shao-Kuan Chen, Ru‐Yin Tsai, Ruey-Shyang Hseu, Sheng‐Yuan Huang, Chih-Cheng Chien, Hsi‐Ting Lin, Chi-Jung Huang, Shang Ying Chiang, and Victoria Ying Jen Huang
- Subjects
0301 basic medicine ,Programmed cell death ,Mitomycin ,medicine.medical_treatment ,Population ,Apoptosis ,Caspase 3 ,Biochemistry ,Fungal Proteins ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,medicine ,Humans ,Immunologic Factors ,education ,Molecular Biology ,education.field_of_study ,Chemistry ,Cell growth ,Autophagy ,Mitomycin C ,Ganoderma ,Cell Biology ,Immunotherapy ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Urinary Bladder Neoplasms ,030220 oncology & carcinogenesis ,Cancer research - Abstract
Current chemotherapy and immunotherapy treatments followed by transurethral resection for urinary bladder urothelial carcinoma (UC) usually suffer from poor prognosis and high recurrence rate. Design and modification of current formulation with the novel adjuvants are needed. A recombinant protein derived from Ganoderma microsporum named as Ganoderma microsporum immunomodulatory protein (GMIP) was used to treat UC cells. We found GMIP elicits a dose-dependent and time-dependent anti-UC cell proliferation effect, with a half-maximal inhibition concentration (IC50 ) comparable to mitomycin C (MMC), a commonly used chemotherapy agent. After GMIP treatment, UC cells showed apoptotic phenomenon including cell cycle arrest in the G1 phase, elevated sub-G1 population, mitochondrial membrane potential loss, up-regulated p21 expression, p21 nuclear translocation, caspase activation, and PARP cleavage in a p53-independent but p21-mediated pathways. Unlike lung cancer cells, GMIP treated UC cells showed no autophagic scheme including Beclin-1, an autophagy to apoptosis switch marker, was not cleaved by caspase 3 and slight LC3B-II accumulation. Also, the classic autophagic inhibitor, chloroquine had no effect in GMIP-mediated cell death made us conclude that GMIP induced apoptosis through caspase activation but not autophagy in UC cells. Additionally, GMIP showed synergistic effects with MMC in killing UC cells and thus decreased the concentration of MMC usage to reach the comparable apoptotic effects. Our results delineate novel strategies for treatment of UC by GMIP alone or in combination with MMC application and provide a promising therapeutic cocktail for better treatment of urinary bladder urothelial carcinoma.
- Published
- 2018
- Full Text
- View/download PDF
48. Supplementation of Probiotic Butyricicoccus pullicaecorum Mediates Anticancer Effect on Bladder Urothelial Cells by Regulating Butyrate-Responsive Molecular Signatures
- Author
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Yen-Chieh Wang, Wei-Chi Ku, Chih-Yi Liu, Yu-Che Cheng, Chih-Cheng Chien, Kang-Wei Chang, and Chi-Jung Huang
- Subjects
bladder cancer-associated protein ,Medicine (General) ,R5-920 ,Butyricicoccus pullicaecorum ,urothelial bladder cancer ,butyrate ,apoptosis ,Clinical Biochemistry ,urologic and male genital diseases ,female genital diseases and pregnancy complications - Abstract
In bladder cancer, urothelial carcinoma is the most common histologic subtype, accounting for more than 90% of cases. Pathogenic effects due to the dysbiosis of gut microbiota are localized not only in the colon, but also in regulating bladder cancer distally. Butyrate, a short-chain fatty acid produced by gut microbial metabolism, is mainly studied in colon diseases. Therefore, the resolution of the anti-cancer effects of butyrate-producing microbes on bladder urothelial cells and knowledge of the butyrate-responsive molecules must have clinical significance. Here, we demonstrate a correlation between urothelial cancer of the bladder and Butyricicoccus pullicaecorum. This butyrate-producing microbe or their metabolite, butyrate, mediated anti-cancer effects on bladder urothelial cells by regulating cell cycle, cell growth, apoptosis, and gene expression. For example, a tumor suppressor against urothelial cancer of the bladder, bladder cancer-associated protein, was induced in butyrate-treated HT1376 cells, a human urinary bladder cancer cell line. In conclusion, urothelial cancer of the bladder is a significant health problem. To improve the health of bladder urothelial cells, supplementation of B. pullicaecorum may be necessary and can further regulate butyrate-responsive molecular signatures.
- Published
- 2021
- Full Text
- View/download PDF
49. Tailor-made zinc-finger transcription factors activate FLO11 gene expression with phenotypic consequences in the yeast Saccharomyces cerevisiae.
- Author
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Jia-Ching Shieh, Yu-Che Cheng, Mao-Chang Su, Michael Moore, Yen Choo, and Aaron Klug
- Subjects
Medicine ,Science - Abstract
Cys2His2 zinc fingers are eukaryotic DNA-binding motifs, capable of distinguishing different DNA sequences, and are suitable for engineering artificial transcription factors. In this work, we used the budding yeast Saccharomyces cerevisiae to study the ability of tailor-made zinc finger proteins to activate the expression of the FLO11 gene, with phenotypic consequences. Two three-finger peptides were identified, recognizing sites from the 5' UTR of the FLO11 gene with nanomolar DNA-binding affinity. The three-finger domains and their combined six-finger motif, recognizing an 18-bp site, were fused to the activation domain of VP16 or VP64. These transcription factor constructs retained their DNA-binding ability, with the six-finger ones being the highest in affinity. However, when expressed in haploid yeast cells, only one three-finger recombinant transcription factor was able to activate the expression of FLO11 efficiently. Unlike in the wild-type, cells with such transcriptional activation displayed invasive growth and biofilm formation, without any requirement for glucose depletion. The VP16 and VP64 domains appeared to act equally well in the activation of FLO11 expression, with comparable effects in phenotypic alteration. We conclude that the functional activity of tailor-made transcription factors in cells is not easily predicted by the in vitro DNA-binding activity.
- Published
- 2007
- Full Text
- View/download PDF
50. A star-shaped conjugated molecule featuring a triazole core and diketopyrrolopyrrole branches is an efficient electron-selective interlayer for inverted polymer solar cells
- Author
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Yu-Che Cheng, Wei-Jen Chen, Ru-Jong Jeng, Bo-Tau Liu, Chin-Ti Chen, Da-Wei Kuo, and Rong-Ho Lee
- Subjects
Materials science ,General Chemical Engineering ,02 engineering and technology ,General Chemistry ,Conjugated system ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Triphenylamine ,01 natural sciences ,Polymer solar cell ,0104 chemical sciences ,Indium tin oxide ,Electron transfer ,chemistry.chemical_compound ,Crystallography ,Photoactive layer ,chemistry ,0210 nano-technology ,HOMO/LUMO ,Layer (electronics) - Abstract
A novel triazole-cored, star-shaped, conjugated molecule (TDGTPA) has been synthesized for use as an electron-selective interlayer in inverted polymer solar cells (PSCs). This star-shaped molecule comprised a triazole unit as the central core, 2,5-thienyl diketopyrrolopyrrole units as π-conjugated bridges, and tert-butyl-substituted triphenylamine units as both end groups and donor units. The inverted PSC had the device structure indium tin oxide/ZnO/TDGTPA/poly(3-hexylthiophene) (P3HT)/fullerene derivative (PC71BM)/MoO3/Ag. Inserting TDGTPA as the electron-selective layer enhanced the compatibility of the ZnO-based electron transport layer and the P3HT:PC71BM blend-based photoactive layer. The low energy of the lowest unoccupied molecular orbital (−3.98 eV) of TDGTPA was favorable for electron transfer from the photoactive layer to the ZnO layer, thereby enhancing the photovoltaic performance of the PSC. The photo-conversion efficiency of the device incorporating TDGTPA as the electron-selective layer was 15.8% greater than that of the corresponding device prepared without it.
- Published
- 2018
- Full Text
- View/download PDF
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