259 results on '"Younis Y"'
Search Results
2. Securing access to cloud computing for critical infrastructure
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Younis, Y. A. and Kifayat, K.
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004.67 ,QA75 Electronic computers. Computer science - Abstract
Cloud computing offers cost effective services on-demand which encourage critical infrastructure providers to consider migrating to the cloud. Critical infrastructures are considered as a backbone of modern societies such as power plants and water. Information in cloud computing is likely to be shared among different entities, which could have various degrees of sensitivity. This requires robust isolation and access control mechanisms. Although various access control models and policies have been developed, they cannot fulfil requirements for a cloud based access control system. The reason is that cloud computing has a diverse sets of security requirements and unique security challenges such as multi-tenant and heterogeneity of security policies, rules and domains. This thesis provides a detailed study of cloud computing security challenges and threats, which were used to identify security requirements for various critical infrastructure providers. We found that an access control system is a crucial security requirement for the surveyed critical infrastructure providers. Furthermore, the requirement analysis was used to propose a new criteria to evaluate access control systems for cloud computing. Moreover, this work presents a new cloud based access control model to meet the identified cloud access control requirements. The model does not only ensure the secure sharing of resources among potential untrusted tenants, but also has the capacity to support different access permissions for the same cloud user. Our focused in the proposed model is the lack of data isolation in lower levels (CPU caches), which could lead to bypass access control models to gain some sensitive information by using cache side-channel attacks. Therefore, the thesis investigates various real attack scenarios and the gaps in existing mitigation approaches. It presents a new Prime and Probe cache side-channel attack, which can give detailed information about addresses accessed by a virtual machine with no need for any information about cache sets accessed by the virtual machine. The design, implementation and evaluation of a proposed solution preventing cache side-channel attacks are also presented in the thesis. It is a new lightweight solution, which introduces very low overhead (less than 15,000 CPU cycles). It can be applied in any operating system and prevents cache side-channel attacks in cloud computing. The thesis also presents a new detecting cache side-channel attacks solution. It focuses on the infrastructure used to host cloud computing tenants by counting cache misses caused by a virtual machine. The detection solutions has 0% false negative and 15% false positive.
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- 2015
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3. Large ventricular myxoma causing inflow and outflow obstruction of the right ventricle; A Case Report
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Younis Yasin, Ahmad K. Darwazah, Izat Rajabi, Fida Hussien Al-Ali, Rama Subhi, Asala Hasani, Diana Yasin, and Maroun Helou
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Myxoma ,Cardiothoracic ,Palestine ,Surgery ,RD1-811 ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Background Myxomas are the most common primary benign heart tumors, typically found in the left atrium, with only 2–4% occurring in the right ventricle. Clinical presentations vary widely, including congestive heart failure and systemic embolic phenomena. This case report describes a rare right ventricular myxoma causing both inflow and outflow obstruction, presenting as progressive exertional dyspnea. Case Presentation A 23-year-old male presented with two weeks of worsening exertional dyspnea. He was stable but tachypneic with a systolic murmur over the tricuspid area. Elevated erythrocyte sedimentation rate (ESR) and C-Reactive protein (CRP) were noted, while other lab tests were normal. Imaging, including echocardiography and chest tomography scan (CT) revealed a 4 × 3.8 × 4.6 cm mass in the right ventricle extending to the pulmonary trunk. Surgical resection via right ventriculotomy was performed, and histopathology confirmed myxoma. The patient recovered uneventfully. Conclusion Right ventricular myxomas, though rare, can cause significant obstruction and present with diverse symptoms. Timely diagnosis using imaging techniques like echocardiography is crucial. Surgical resection remains the definitive treatment, offering excellent outcomes and low recurrence rates. Early intervention is vital to prevent serious complications and ensure favorable patient prognosis.
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- 2024
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4. Fusarium species associated with date palm in Saudi Arabia
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Saleh, Amgad A., Sharafaddin, Anwar H., El_Komy, Mahmoud H., Ibrahim, Yasser E., Hamad, Younis K., and Molan, Younis Y.
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- 2017
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5. Mitochondrial Molecular Markers for Resistance to Bayoud Disease in Date Palm
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Saleh, Amgad A., primary, Sharafaddin, Anwar H., additional, El-Komy, Mahmoud H., additional, Ibrahim, Yasser E., additional, Hamad, Younis K., additional, and Molan, Younis Y., additional
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- 2017
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6. The Fate of The Poultry Industry Forecasting in Kurdistan Region by Using Neural Networks تنبؤات صناعة الدواجن فی منطقة کردستان من خلال استخدام الشبکات العصبیة
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Younis Y. Sofee, Rakan S. Rashid, and Zahir Abdullateef Babaca
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Artificial neural network ,White meat ,business.industry ,Statistics ,Predictive power ,Growth model ,Poultry farming ,business ,Regression - Abstract
The most recent studies demonstrate the predictive power of neural-networks. Used neural-networks were success to predict of economic results trends, and the neural-networks have an advantage, whereas its can the nonlinear functions approximate. In doing so, it can provide the alternative analysis regression of the biology of modeling growth. Some Few searches were conducted by neural-networks on the animal growth model artificially. The present study was conducted to compare, the parameters of various associated input performance. For example, the chickens price/kg in poultry farm, the price/tons of poultry feed, the quantity import of white meat, and the numbers of chickens slaughtered, which is expected to be of help in future for our study. We applied series of data/monthly for rates exchange in between 2009 to 2014. Aims of recent study in the first place; to develop ANN- based models to study the Fate of the Poultry Industry Forecasting in Kurdistan Region. Secondly, through previous data we can recommend that, neural-networks method, more suitable in chicken industries, than the simple analysis regression, if accurate data are collected and processed in such forms.
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- 2020
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7. DISCOVERY OF THE 2-AMINOPYRIDINE MMV390048 AS AN ANTI-MALARIAL WITH THE POTENTIAL TO BE A COMPONENT IN A SINGLE DOSE CURE: 734
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Paquet, T., Chibale, K., Street, L., Younis, Y., Cabrera, Gonzalez D., Le Manach, C., Feng, T., Nchinda, A., Waterson, D., Witty, M., Wittlin, S., Charman, S., White, K., Avery, V., and Bashyam, S.
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- 2014
8. MUTAGENICITY OF KOJIC ACID PRODUCED FROM WILD TYPE Aspergillus oryzae
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Tariq Ibrahim, Salah Ahmed, Younis Younis, and Michael Chikindas
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kojic acid ,mutagenicity ,ames test ,Agriculture - Abstract
Kojic acid (KA) is a multipurpose natural compound, commonly used in the food and cosmetics industry. It is produced by different types of molds especially by the species Aspergillus oryzae. In this study, we test the mutagenicity of local produced kojic acid PKA produced by the wild-type strain of A. oryzae as well as the standard commercially produced kojic acid SKA and ascorbic acid SAA for comparison to stop food manufacturers doubts about using KA. AMES test with Salmonella enterica ATCC 29629 strain TA1535 and S9 liver enzyme for metabolic activation of the tested compounds were utilized in this study by direct and indirect methods were used in the test. The study results showed that the tested PKA kojic acid had cannot induce reverse mutation in the strain ATCC 29629TA1535 used in the test in contrast with the positive control in direct and indirect methods, even where the tested acids were treated with S9 liver enzymes with or without pre-incubation for three hours at 37 °C hadn’t given positive results on TA1535. The used concentration of 1% and 10% S9 liver enzymes hadn’t metabolically activated the three acids. 6 mg/plate of KA inhibited the growth of TA1535. SAA gave the same negative results as PKA and SKA. In conclusion, the tested PKA produced by wild-type A. oryzae was not has mutagenic effect on bacterial strain TA1535 and gave the same effect as the commonly used as food additive SAA and SKA even when treated with S9 liver enzymes.
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- 2023
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9. Pyrones as polyketide synthons
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Younis, Y. M. E. H.
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547.59 - Published
- 1982
10. Mitochondrial Molecular Markers for Resistance to Bayoud Disease in Date Palm
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Amgad A, Saleh, Anwar H, Sharafaddin, Mahmoud H, El-Komy, Yasser E, Ibrahim, Younis K, Hamad, and Younis Y, Molan
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Genetic Markers ,Fusarium ,Phoeniceae ,Mitochondria ,Plant Diseases ,Plasmids - Abstract
Bayoud disease, caused by Fusarium oxysporum f. sp. albedinis, is a very serious and destructive disease to date palm. Screening of date palm germplasm for resistance to bayoud disease is a crucial step to avoid or alleviate the disease consequences. Fortunately, it was discovered that there are two mitochondrial plasmid-like DNA molecules associated with susceptibility or resistance to bayoud disease. In this chapter, we present a fast, simple, and reliable technique to screen date palm germplasm for the presence of these mitochondrial molecular markers associated with susceptibility or resistance to bayoud.
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- 2017
11. Simulation Analysis of Cognitive Radio Cooperative Networks for Next Generation Technology.
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Yonis, A. Z., Mahmood, T. B., Younis, E. H., and Younis, Y. L.
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COGNITIVE radio ,NEXT generation networks ,RADIO networks ,COGNITIVE analysis ,RADIO technology ,TELECOMMUNICATION - Abstract
To provide different types of data services within the wireless spectrum, new communication technologies are required. The Cognitive Radio, CR, cooperative network is one such emerging technology to fulfill the new needs. In this paper we used simulation to investigate key enhancement focused on Cognitive Radio technology for fifth generation (5G) mobile communication networks. Cognitive radio is an important candidate for next generation (5G) systems because it gives the unlicensed users the ability to access the spectrum, resulting in increased demand for radio spectrum resources. The effectiveness of spectrum sensing methodologies for cognitive radio is presented to provide a step by step treatment of the topics. [ABSTRACT FROM AUTHOR]
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- 2020
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12. Antimalarial efficacy of MMV390048, an inhibitor of Plasmodium phosphatidylinositol 4-kinase
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Paquet, T., Manach, C., Cabrera, D.G., Younis, Y., Henrich, P.P., Abraham, T.S., Lee, M.C., Basak, R., Ghidelli-Disse, S., Lafuente-Monasterio, M.J., Bantscheff, M., Ruecker, A., Blagborough, A.M., Zakutansky, S.E., Zeeman, A.M., White, K.L., Shackleford, D.M., Mannila, J., Morizzi, J., Scheurer, C., Angulo-Barturen, I., Martinez, M.S., Ferrer, S., Sanz, L.M., Gamo, F.J., Reader, J., Botha, M., Dechering, K.J., Sauerwein, R.W., Tungtaeng, A., Vanachayangkul, P., Lim, C.S., Burrows, J., Witty, M.J., Marsh, K.C., Bodenreider, C., Rochford, R., Solapure, S.M., Jimenez-Diaz, M.B., Wittlin, S., Charman, S.A., Donini, C., Campo, B., Birkholtz, L.M., Hanson, K.K., Drewes, G., Kocken, C.H., Delves, M.J., Leroy, D., Fidock, D.A., Waterson, D., Street, L.J., Chibale, K, Paquet, T., Manach, C., Cabrera, D.G., Younis, Y., Henrich, P.P., Abraham, T.S., Lee, M.C., Basak, R., Ghidelli-Disse, S., Lafuente-Monasterio, M.J., Bantscheff, M., Ruecker, A., Blagborough, A.M., Zakutansky, S.E., Zeeman, A.M., White, K.L., Shackleford, D.M., Mannila, J., Morizzi, J., Scheurer, C., Angulo-Barturen, I., Martinez, M.S., Ferrer, S., Sanz, L.M., Gamo, F.J., Reader, J., Botha, M., Dechering, K.J., Sauerwein, R.W., Tungtaeng, A., Vanachayangkul, P., Lim, C.S., Burrows, J., Witty, M.J., Marsh, K.C., Bodenreider, C., Rochford, R., Solapure, S.M., Jimenez-Diaz, M.B., Wittlin, S., Charman, S.A., Donini, C., Campo, B., Birkholtz, L.M., Hanson, K.K., Drewes, G., Kocken, C.H., Delves, M.J., Leroy, D., Fidock, D.A., Waterson, D., Street, L.J., and Chibale, K
- Abstract
Contains fulltext : 177492.pdf (publisher's version ) (Closed access), As part of the global effort toward malaria eradication, phenotypic whole-cell screening revealed the 2-aminopyridine class of small molecules as a good starting point to develop new antimalarial drugs. Stemming from this series, we found that the derivative, MMV390048, lacked cross-resistance with current drugs used to treat malaria. This compound was efficacious against all Plasmodium life cycle stages, apart from late hypnozoites in the liver. Efficacy was shown in the humanized Plasmodium falciparum mouse model, and modest reductions in mouse-to-mouse transmission were achieved in the Plasmodium berghei mouse model. Experiments in monkeys revealed the ability of MMV390048 to be used for full chemoprotection. Although MMV390048 was not able to eliminate liver hypnozoites, it delayed relapse in a Plasmodium cynomolgi monkey model. Both genomic and chemoproteomic studies identified a kinase of the Plasmodium parasite, phosphatidylinositol 4-kinase, as the molecular target of MMV390048. The ability of MMV390048 to block all life cycle stages of the malaria parasite suggests that this compound should be further developed and may contribute to malaria control and eradication as part of a single-dose combination treatment.
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- 2017
13. Embedded Descriptor Generation in Faster R-CNN for Multi-Object Tracking
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Younis Younis and Khalil Alsaif
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convolutional neural networks ,multi-object detection ,multi-object tracking ,Mathematics ,QA1-939 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
With the rapid growth of computer usage to extract the required knowledge from a huge amount of information, such as a video file, significant attention has been brought towards multi-object detection and tracking. Artificial Neural Networks (ANNs) have shown outstanding performance in multi-object detection, especially the Faster R-CNN network. In this study, a new method is proposed for multi-object tracking based on descriptors generated by a neural network that is embedded in the Faster R-CNN. This embedding allows the proposed method to directly output a descriptor for each object detected by the Faster R-CNN, based on the features detected by the Faster R-CNN to detect the object. The use of these features allows the proposed method to output accurate values rapidly, as these features are already computed for the detection and have been able to provide outstanding performance in the detection stage. The descriptors that are collected from the proposed method are then clustered into a number of clusters equal to the number of objects detected in the first frame of the video. Then, for further frames, the number of clusters is increased until the distance between the centroid of the newly created cluster and the nearest centroid is less than the average distance among the centroids. Newly added clusters are considered for new objects, whereas older ones are kept in case the object reappears in the video. The proposed method is evaluated using the UA-DETRAC (University at Albany Detection and Tracking) dataset and has been able to achieve 64.8% MOTA and 83.6% MOTP, with a processing speed of 127.3 frames per second.
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- 2021
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14. Fusarium species associated with date palm in Saudi Arabia
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Saleh, Amgad A., primary, Sharafaddin, Anwar H., additional, El_Komy, Mahmoud H., additional, Ibrahim, Yasser E., additional, Hamad, Younis K., additional, and Molan, Younis Y., additional
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- 2016
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15. Characterisitics and chemical composition of the oil of Cucurbita pepo seeds
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Younis, Y M H and Ghirmay, Senait
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lcsh:Chemistry ,lcsh:QD1-999 - Published
- 1998
16. Nitrogen Distribution , Molecular Weight and Size of Casein Micelles in Awassi Sheep’s Milk
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Saleem, R. M., primary, Mahmoud, W. A., additional, and Younis, Y. A., additional
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- 1986
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17. Serum Dickopff 1 as a Novel Biomarker in Hepatocellular Carcinoma Diagnosis and Follow Up After Ablative Therapy
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Younis YS, Alegaily HS, Elagawy W, Semeya AA, Abo-Amer YEE, El-Abgeegy M, Mostafa SM, Elsergany HF, and Abd-Elsalam S
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serum dickopff 1 ,aphafeto protein ,hepatocellular carcinoma ,radiofrequency ablation ,microwave ablation ,tace. ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Yehia Sadek Younis,1 Hatem Samir Alegaily,1 Waleed Elagawy,2 Atteyat Aboelmaged Semeya,3 Yousry Esam-Eldin Abo-Amer,3 Mohamed El-Abgeegy,4 Sahar Mohamed Mostafa,4 Heba Fadl Elsergany,4 Sherief Abd-Elsalam5 1Hepatology, Gastroenterology and Infectious Diseases, Benha Faculty of Medicine, Qalybia, Egypt; 2Department of Tropical Medicine, Faculty of Medicine, Port Said University, Port Fouad, Egypt; 3Hepatology, Gastroenterology and Infectious Diseases, Mahala Hepatology Teaching Hospital, Gharbia, Egypt; 4National Hepatology and Tropical Medicine Research Institute, Cairo, Egypt; 5Department of Tropical Medicine, Faculty of Medicine, Tanta University, Gharbia, EgyptCorrespondence: Sherief Abd-ElsalamDepartment of Tropical Medicine, Faculty of Medicine, Tanta University, El-Geish Street, Tanta, EgyptTel +201095159522Email Sherif_tropical@yahoo.comBackground: This study aimed to evaluate the role of Dickopff 1 (DKK1) serum levels as a marker for early detection of hepatocellular carcinoma (HCC) and to compare it with alphafetoprotein (AFP) after non-surgical intervention (microwave ablation, radiofrequency ablation) in HCC.Patients and methods: This prospective study was conducted in Al-Mahalla hepatology teaching hospital from June 2015 to June 2017. One hundred and twenty patients were included. They were classified into four groups: Group A: 40 patients with chronic liver disease; Group B: 40 patients with HCC which were divided into 2 main sub groups, group Ba which included HCC patients who were not eligible for ablative therapy and group Bb which included HCC patients who were eligible for ablative therapy; Group C: 20 healthy control subjects matched for age and sex; Group D: 20 HCC patients with negative AFP, DKK1 was done for them.Results: There was a highly significant difference (p < 0.001) between groups regarding serum level of Dickpoff 1 with mean of 1 ng/mL in group A (cirrhotic), 2.38 ng/mL in group B (HCC), and 1.83 ng/mL in group D (AFP negative HCC) in comparison to control group C with mean of 0.54 ng/mL. There was a highly statistically significant difference (p value less =0.01) in the studied groups regarding serum Dickpoff 1 before and after intervention with a mean of 2.38 ng/mL before intervention and mean of 1.37 ng/mL after 1 month of intervention.Conclusion: Serum Dkk-1 has higher sensitivity, specificity, and accuracy in early diagnosis of HCC than AFP.Keywords: serum Dickopff 1, aphafeto protein, hepatocellular carcinoma, radiofrequency ablation, microwave ablation, TACE
- Published
- 2019
18. Determination of the Biomass and Phycocolloid Contents of some Marine Algae from Eritrea
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YOUNIS, Y., primary, TECLEAB, S., additional, GHEZA, T., additional, and RAHAMA, I., additional
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- 2000
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19. Contemporary status of electroconvulsive therapy in a teaching psychiatric unit in Al Ain, United Arab Emirates
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Daradkeh, Tewfik K., primary, Saad, A., additional, and Younis, Y., additional
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- 1998
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20. A profile of alcohol and drug misusers in an Arab community
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Younis, Y. O., primary and Saad, A. G., additional
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- 1995
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21. Vortical Flow Topology on Windward and Leeward side of Delta Wing at Supersonic Speed.
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Younis, Y., Bibi, A., Haque, A. U., and Khushnood, S.
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COMPUTATIONAL fluid dynamics ,DELTA wing airplanes ,SUPERSONIC aerodynamics ,VORTEX motion ,TRANSITION flow ,AERODYNAMIC noise ,TURBULENCE ,UNSTEADY flow (Aerodynamics) ,MACH number ,ANGLE of attack (Aerodynamics) - Abstract
CFD (Computational Fluid Dynamics) Analysis of Delta wing configurations used for supersonic flight regime is a key area of interest for flow control due to coherent vortical structures existing on the leeward side of wing. In the present research, a numerical study was carried out by using two different turbulence models at Mach No. 1.6, to identify the influence of turbulence modeling and wing on overall pressure distribution and onset of flow separation. Fully structured multi-block grid was used with the grid refinement near the wall to resolve the vortical flow structures accurately. Different turbulence models used were SA (Spalart-Allmaras) and kω-SST (Shear-stress Transport). An under prediction in pressure distribution was observed by using SA Turbulence model, in comparison with known experimental data at fixed Mach No. The analysis of results presented showed that the height of primary vortex increases by increasing the angle of attack and by keeping the Mach No. as fixed. Moreover, the vortex formation on cambered wing seems less pronounced as compared with that of sharp wing at high angle of attack. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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22. African Cucurbita pepo L.: properties of seed and variability in fatty acid composition of seed oil
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Younis, Y. M., Ghirmay, S., and Al-Shihry, S. S.
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- 2000
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23. Some Aspects of Psychiatry in the Sudan
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Ibrahim, H. H. A. and Younis, Y. O.
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- 1978
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24. The diagnostic stability of ICD-10 psychiatric diagnoses in clinical practice
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Daradkeh, T. K., El-Rufaie, O. E. F., Younis, Y. O., and Ghubash, R.
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- 1997
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25. Is there a real need for a short-stay unit in Al Ain, United Arab Emirates?
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Daradkeh, T. K., El-Rufaie, O. E. F., Younis, Y., and Ghubash, R.
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- 1997
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26. 17PTumor suppressor P53 gene codon 72 polymorphism and imatinib cytogenetic response in chronic myeloid leukemia.
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Elkhouly, E A, Khalifa, K A, Radwan, W M, and Younis, Y A
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- *
MYELOID leukemia , *CYTOGENETICS , *TUMOR suppressor genes - Published
- 2018
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27. Effects of Pichia manshurica yeast supplementation on ruminal fermentation, nutrient degradability, and greenhouse gas emissions in aflatoxin B1 contaminated diets.
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Soltan Y, Morsy A, Elazab M, El-Nile AE, Hashem N, Sultan M, Hamad Y, El Lail GA, Abo-Sherif S, Dabour N, Kheadr E, Hafez E, and Sallam S
- Subjects
- Animals, Food Contamination analysis, Methane metabolism, Methane analysis, Saccharomyces cerevisiae, Rumen microbiology, Rumen metabolism, Fermentation, Animal Feed analysis, Diet veterinary, Goats, Aflatoxin B1 analysis, Pichia, Greenhouse Gases analysis, Dietary Supplements analysis
- Abstract
Yeast feed additives present a natural approach for mitigating ruminal greenhouse gases (GHG) in an environmentally sustainable manner. This study aimed to isolate yeast strains from ruminal fluids capable of reducing GHG from Aflatoxin (AFB1) contaminated diets. Two isolates of Pichia manchuria (FFNLYFC1 and FFNLYFC2) were isolated and identified from the ruminal contents of dairy Zaraibi goats. An in vitro gas production assay was conducted to evaluate the impact of the yeast supplementations on a basal diet contaminated with AFB1 or not. The treatments were control (-AFB1; basal diet without supplements), control with AFB1 contamination (+ AFB1; basal diet containing 20 ppb AFB1), and yeast-supplemented diets (basal diet supplemented with Saccharomyces cerevisiae, and three treatments of P. manchuria [FFNLYFC1, FFNLYFC2, and their mixture at 1:1 ratio (Mix)]. High biological components were detected in abundance of both FFNLYFC1, FFNLYFC2 filtrates (e.g., diisooctyl phthalate). The Mix and FFNLYFC2 of P. manchuria reduced (P < 0.05) methane by 23.5 and 20.8%, respectively, while only Mix inhibited carbon dioxide by 44% compared to the + AFB1 diet. All yeast diets improved (P < 0.05) ammonia concentration, total protozoal and Entodinium spp. counts compared to + AFB1 diet. The Mix exhibited higher (P < 0.05) values of ruminal degraded cellulose, total short-chain fatty acids, acetate and propionate compared to the individual isolates diets. The results suggest synergistic interactions among P. manshurica isolates, leading to enhanced ruminal fermentation and reduced GHG emissions while alleviating the adverse effects of AFB1. Therefore, we recommended the Mix of P. Manchuria as a novel feed additive to ruminant diets., (© 2024. The Author(s).)
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- 2024
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28. Association Between Clinical Measures of Depth of Sedation and Multimodal Cerebral Physiology in Acute Traumatic Neural Injury.
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Park K, Froese L, Bergmann T, Gomez A, Sainbhi AS, Vakitbilir N, Islam A, Stein KY, Marquez I, Amenta F, Ibrahim Y, and Zeiler FA
- Abstract
Neurointensive care primarily focuses on secondary injury reduction, utilizing a variety of guideline-based approaches (including administration of high-dose sedation) to reduce the injured state. However, titration of sedation is currently based on the Richmond Agitation Sedation Scale (RASS), a subjective clinical grading score of a patient's response to external physical stimuli, and not an objective measure. Therefore, it is likely that there exists substantial variation in objective sedation depth for a given clinical grade in these patients, leading to undesired sedation depths and cerebral physiological consequences. Improper sedation can impede cerebral autoregulation, emphasizing the critical need for optimal sedation in traumatic brain injury (TBI) patients. This study evaluates the relationship between RASS to an objective measure of depth of sedation (bispectral index, BIS) and cerebral physiological measures. Fifty-nine patients were assessed using Jonckheere-Terpstra testing to compare various key physiologies with RASS. RASS (-5 through 0 categories) showed no statistically significant relationship between BIS and cerebral physiological parameters, after adjusting for multiple comparisons. Furthermore, it is crucial to note that within each RASS value, the distribution of the physiological measures all had high variability. As an exemplar, for RASS values of -5 and -4, BIS ranged from near 0 (burst suppression levels) up to over 80 (near awake states). BIS and other cerebral physiologies displayed substantial variation across each RASS category. This suggests that RASS as a means to titrate sedative medication for the goal of neuroprotection is insufficient. More momentary, individualized determination of sedation depth is required for TBI patients., (© The Author(s) 2024. Published by Mary Ann Liebert, Inc.)
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- 2024
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29. Tumour suppressor protein sMEK1 links to IRE1 signalling pathway to modulate its activity during ER stress.
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Qadri O, Bashir S, Banday M, Hilal N, Majeed Y, Fatima NI, Pal D, and Fazili KM
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- Humans, Phosphorylation, Tumor Suppressor Proteins metabolism, Tumor Suppressor Proteins genetics, Unfolded Protein Response, Endoplasmic Reticulum metabolism, HEK293 Cells, HeLa Cells, X-Box Binding Protein 1 metabolism, X-Box Binding Protein 1 genetics, Apoptosis, Protein Serine-Threonine Kinases metabolism, Protein Serine-Threonine Kinases genetics, Endoplasmic Reticulum Stress, Signal Transduction, Endoribonucleases metabolism, Endoribonucleases genetics
- Abstract
The Endoplasmic Reticulum is a pervasive, dynamic cellular organelle that performs a wide range of functions in the eukaryotic cell, including protein folding and maturation. Upon stress, ER activates an adaptive cellular pathway, namely Unfolded Protein Response, that transduces information from ER to nucleus, restoring homeostasis in the ER milieu. UPR consists of three membrane-tethered sensors; IRE1, PERK and ATF6. Among all the UPR sensors, the IRE1 branch acts as a central pathway that orchestrates several pathways to determine cell fate. However, the detailed knowledge underlying the whole process is not understood yet. Previously, we determined the sMEK1 as one of the interacting partners of IRE1. sMEK1 is a protein phosphatase, which has been indicated in a number of critical cellular functions like apoptosis, cell proliferation, and tumour suppression. In this study, we evaluated the role of sMEK1 on the IRE1 signalling pathway. Our data indicate that sMEK1 can inhibit IRE1 phosphorylation under ER stress. This inhibitory effect of sMEK1 could be reflected in its downstream effectors, Xbp1 and RIDD, which are downregulated in the presence of sMEK1. We also found that the repressing effect of sMEK1 was specific to the IRE1 signalling pathway and could be preserved even under prolonged ER stress. Our findings also indicate that sMEK1 can inhibit IRE1 and its downstream molecules under ER stress irrespective of other UPR sensors. These results help to draw the mechanistic details giving insights into different molecular connections of UPR with other pathways., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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30. Large ventricular myxoma causing inflow and outflow obstruction of the right ventricle; A Case Report.
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Yasin Y, Darwazah AK, Rajabi I, Al-Ali FH, Subhi R, Hasani A, Yasin D, and Helou M
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- Humans, Male, Young Adult, Echocardiography, Tomography, X-Ray Computed, Myxoma complications, Myxoma surgery, Myxoma diagnosis, Heart Neoplasms surgery, Heart Neoplasms complications, Heart Neoplasms diagnosis, Ventricular Outflow Obstruction etiology, Ventricular Outflow Obstruction surgery, Heart Ventricles
- Abstract
Background: Myxomas are the most common primary benign heart tumors, typically found in the left atrium, with only 2-4% occurring in the right ventricle. Clinical presentations vary widely, including congestive heart failure and systemic embolic phenomena. This case report describes a rare right ventricular myxoma causing both inflow and outflow obstruction, presenting as progressive exertional dyspnea., Case Presentation: A 23-year-old male presented with two weeks of worsening exertional dyspnea. He was stable but tachypneic with a systolic murmur over the tricuspid area. Elevated erythrocyte sedimentation rate (ESR) and C-Reactive protein (CRP) were noted, while other lab tests were normal. Imaging, including echocardiography and chest tomography scan (CT) revealed a 4 × 3.8 × 4.6 cm mass in the right ventricle extending to the pulmonary trunk. Surgical resection via right ventriculotomy was performed, and histopathology confirmed myxoma. The patient recovered uneventfully., Conclusion: Right ventricular myxomas, though rare, can cause significant obstruction and present with diverse symptoms. Timely diagnosis using imaging techniques like echocardiography is crucial. Surgical resection remains the definitive treatment, offering excellent outcomes and low recurrence rates. Early intervention is vital to prevent serious complications and ensure favorable patient prognosis., (© 2024. The Author(s).)
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- 2024
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31. Feasibility, safety and effectiveness of the enhanced recovery after surgery protocol in patients undergoing liver resection.
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Bhat MY, Ali S, Gupta S, Ahmad Y, Lattoo MR, Ansari MJ, Patel A, Haq MFU, and Parveen S
- Abstract
Backgrounds/aims: The implementation of enhanced recovery after surgery (ERAS) protocols has demonstrated significant advantages for patients by mitigating surgical stress and expediting recovery across a spectrum of surgical procedures worldwide. This investigation seeks to assess the effectiveness of the ERAS protocol specifically in the context of major liver resections within our geographical region., Methods: Our department conducted retrospective analysis of prospectively collected data, gathered from consenting individuals who underwent liver resections from January 2018 to December 2023. The assessment encompassed baseline characteristics, preoperative indications, surgical outcomes, and postoperative complications among patients undergoing liver surgery., Results: Among the included 184 patients (73 standard care, 111 ERAS program), the baseline characteristics were similar. Median postoperative hospital stay differed significantly: 5 days (range: 3-13 days) in ERAS, and 11 days (range: 6-22 days) in standard care ( p < 0.001). Prophylactic abdominal drainage was less in ERAS (54.9%) than in standard care (86.3%, p < 0.001). Notably, in ERAS, 88.2% initiated enteral feeding orally on postoperative day 1, significantly higher than in standard care (47.9%, p < 0.001). Early postoperative mobilization was more common in ERAS (84.6%) than in standard care (36.9%, p < 0.001). Overall complication rates were 21.9% in standard care, and 8.1% in ERAS ( p = 0.004)., Conclusions: Our investigation highlights the merits of ERAS protocol; adherence to its diverse components results in significant reduction in hospital length of stay, and reduced occurrence of postoperative complications, improving short-term recovery post liver resection.
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- 2024
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32. In mares resistant to endometrial infection, periovulatory treatment with ecbolic drugs does not influence uterine clearance or luteal development.
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Khan Y, El-Shalofy A, Kaps M, Gautier C, and Aurich C
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- Animals, Female, Pregnancy, Corpus Luteum drug effects, Cross-Over Studies, Endometritis veterinary, Endometritis drug therapy, Endometrium drug effects, Endometrium metabolism, Horse Diseases drug therapy, Horses, Insemination, Artificial veterinary, Progesterone pharmacology, Progesterone blood, Uterus drug effects, Ovulation drug effects, Oxytocin pharmacology, Oxytocin analogs & derivatives
- Abstract
We aimed to determine associations between experimentally impaired uterine clearance or treatment with ecbolic drugs on luteal development in estrous mares after insemination. In a crossover design, eight mares were treated with saline (CON), clenbuterol (CLEN), oxytocin (OXY) and carbetocin (CARB) from the day of first insemination until 2 days after ovulation. Between treatments, the mares rested for one cycle. Estrous mares were examined for the presence of free intrauterine fluid by transrectal ultrasound. Endometrial swabs for cytology and bacteriology were collected on days 1 and 14. Blood samples were collected daily before AI until day 14 after ovulation for determination of progesterone and PGF
2α metabolites (PGFM). Differences between treatments were compared by a general linear model for repeated measures (SPSS 29). One mare was excluded because of a uterine infection in the control cycle. In all other mares, only minor amounts of free intrauterine fluid were present after insemination and decreased over time (P<0.05) with no treatment x time interaction. There was no effect of treatment on polymorphonucleated cells (PMN) in endometrial cytology after ovulation or PGFM secretion. Progesterone release from day 1-14 as well as pregnancy rate and conceptus size on day 14 was not influenced by treatment. In conclusion, treatment with clenbuterol does not impair uterine clearance in estrous mares resistant to endometritis. Repeated injection of the oxytocin analogue carbetocin during the early postovulatory period is not detrimental to corpus luteum function and can be recommended to enhance uterine clearance., Competing Interests: Declaration of Competing Interest The authors declare that they hold no financial or personal affiliations with anyone or organizations capable of improperly influencing or biasing this article., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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33. Continuous monitoring methods of cerebral compliance and compensatory reserve: a scoping review of human literature.
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Islam A, Froese L, Bergmann T, Gomez A, Sainbhi AS, Vakitbilir N, Stein KY, Marquez I, Ibrahim Y, and Zeiler FA
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- Humans, Monitoring, Physiologic methods, Brain diagnostic imaging, Brain physiopathology, Cerebrovascular Circulation physiology, Compliance, Intracranial Pressure physiology
- Abstract
Objective. Continuous monitoring of cerebrospinal compliance (CC) / cerebrospinal compensatory reserve (CCR) is crucial for timely interventions and preventing more substantial deterioration in the context of acute neural injury, as it enables the early detection of abnormalities in intracranial pressure (ICP). However, to date, the literature on continuous CC/CCR monitoring is scattered and occasionally challenging to consolidate. Approach. We subsequently conducted a systematic scoping review of the human literature to highlight the available continuous CC/CCR monitoring methods. Main results. This systematic review incorporated a total number of 76 studies, covering diverse patient types and focusing on three primary continuous CC or CCR monitoring metrics and methods-Moving Pearson's correlation between ICP pulse amplitude waveform and ICP, referred to as RAP, the Spiegelberg Compliance Monitor, changes in cerebral blood flow velocity with respect to the alternation of ICP measured through transcranial doppler (TCD), changes in centroid metric, high frequency centroid (HFC) or higher harmonics centroid (HHC), and the P2/P1 ratio which are the distinct peaks of ICP pulse wave. The majority of the studies in this review encompassed RAP metric analysis ( n = 43), followed by Spiegelberg Compliance Monitor ( n = 11), TCD studies ( n = 9), studies on the HFC/HHC ( n = 5), and studies on the P2/P1 ratio studies ( n = 6). These studies predominantly involved acute traumatic neural injury (i.e. Traumatic Brain Injury) patients and those with hydrocephalus. RAP is the most extensively studied of the five focused methods and exhibits diverse applications. However, most papers lack clarification on its clinical applicability, a circumstance that is similarly observed for the other methods. Significance. Future directions involve exploring RAP patterns and identifying characteristics and artifacts, investigating neuroimaging correlations with continuous CC/CCR and integrating machine learning, holding promise for simplifying CC/CCR determination. These approaches should aim to enhance the precision and accuracy of the metric, making it applicable in clinical practice., (Creative Commons Attribution license.)
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- 2024
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34. Unravelling effects of phytochemicals from buckwheat on cholesterol metabolism and lipid accumulation in HepG2 cells and its validation through gene expression analysis.
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Bhat S, Majeed Y, Yatoo GN, Hassan S, Khan T, Sofi PA, Ganai BA, Fazili KM, and Zargar SM
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- Humans, Hep G2 Cells, Anticholesteremic Agents pharmacology, Simvastatin pharmacology, Plant Extracts pharmacology, Gene Expression Profiling methods, Gene Expression Regulation drug effects, Fagopyrum chemistry, Fagopyrum metabolism, Cholesterol metabolism, Quercetin pharmacology, Lipid Metabolism drug effects, Lipid Metabolism genetics, Phytochemicals pharmacology, Hydroxymethylglutaryl CoA Reductases metabolism, Hydroxymethylglutaryl CoA Reductases genetics, Cholesterol 7-alpha-Hydroxylase metabolism, Cholesterol 7-alpha-Hydroxylase genetics
- Abstract
Background: The objective of this research was to elucidate the hypocholesterolemic effects of a bioactive compound extracted from buckwheat, and to delineate its influence on the regulatory mechanisms of cholesterol metabolism. The compound under investigation was identified as quercetin., Material and Results: In vitro experiments conducted on HepG2 cells treated with quercetin revealed a significant reduction in intracellular cholesterol accumulation. This phenomenon was rigorously quantified by assessing the transcriptional activity of key genes involved in the biosynthesis and metabolism of cholesterol. A statistically significant reduction in the expression of HMG-CoA reductase (HMGCR) was observed, indicating a decrease in endogenous cholesterol synthesis. Conversely, an upregulation in the expression of cholesterol 7 alpha-hydroxylase (CYP7A1) was also observed, suggesting an enhanced catabolism of cholesterol to bile acids. Furthermore, the study explored the combinatory effects of quercetin and simvastatin, a clinically utilized statin, revealing a synergistic action in modulating cholesterol levels at various dosages., Conclusions: The findings from this research provide a comprehensive insight into the mechanistic pathways through which quercetin, a phytochemical derived from buckwheat, exerts its hypocholesterolemic effects. Additionally, the observed synergistic interaction between quercetin and simvastatin opens up new avenues for the development of combined therapeutic strategies to manage hyperlipidemia., (© 2024. The Author(s), under exclusive licence to Springer Nature B.V.)
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- 2024
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35. Synthesis, pharmacological evaluation, and in silico study of new 3-furan-1-thiophene-based chalcones as antibacterial and anticancer agents.
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Abdula AM, Mohsen GL, Jasim BH, Jabir MS, Rushdi AIR, and Baqi Y
- Abstract
New 3-furan-1-thiophene-based chalcones were synthesized, characterized and pharmacologically evaluated as antibacterial and anticancer agents against two bacterial species; Gram-positive ( Streptococcus pyogenes ) and Gram-negative ( Pseudomonas aeruginosa ). All tested final compounds were active against the two bacterial species; S. pyogenes and P . aeruginosa . Especially compound AM4 showed large inhibition zone (27.13 and 23.30 mm), respectively. Using the DPPH assay, the new chalcones were evaluated for their free radical scavenging activity and found to reach up to 90 %, accomplished at a test concentration of 200 μg/mL. Furthermore, the chalcone derivatives were investigated against two breast cell lines; MCF-7 (cancerous) and MCF-10A (non-cancerous). Compound AM4 showed potent anticancer activity (IC
50 = 19.354 μg/mL) in comparison to the other tested chalcone derivatives. In silico study was achieved using the PyRx AutoDock Vina software (0.8) to study the interaction types between the new hits and the binding sites of targeted proteins; glucosamine-6-phosphate synthase and tubulin, the target for antibacterial and anticancer drugs, respectively. Based on the molecular docking results the tested chalcones bind to the active pocket of the respective proteins, which support the in vitro results. In conclusion, 3-furan-1-thiophene-based chalcones could serve as new hits in the discovery of novel anticancer and/or antibacterial drugs., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)- Published
- 2024
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36. Associations Between Intracranial Pressure Extremes and Continuous Metrics of Cerebrovascular Pressure Reactivity in Acute Traumatic Neural Injury: A Scoping Review.
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Stein KY, Amenta F, Froese L, Gomez A, Sainbhi AS, Vakitbilir N, Ibrahim Y, Islam A, Bergmann T, Marquez I, and Zeiler FA
- Abstract
Cerebrovascular pressure reactivity plays a key role in maintaining constant cerebral blood flow. Unfortunately, this mechanism is often impaired in acute traumatic neural injury states, exposing the already injured brain to further pressure-passive insults. While there has been much work on the association between impaired cerebrovascular reactivity following moderate/severe traumatic brain injury (TBI) and worse long-term outcomes, there is yet to be a comprehensive review on the association between cerebrovascular pressure reactivity and intracranial pressure (ICP) extremes. Therefore, we conducted a systematic review of the literature for all studies presenting a quantifiable statistical association between a continuous measure of cerebrovascular pressure reactivity and ICP in a human TBI cohort. The methodology described in the Cochrane Handbook for Systematic Reviews was used. BIOSIS, Cochrane Library, EMBASE, Global Health, MEDLINE, and SCOPUS were all searched from their inceptions to March of 2023 for relevant articles. Full-length original works with a sample size of ≥10 patients with moderate/severe TBI were included in this review. Data were reported in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses. A total of 16 articles were included in this review. Studies varied in population characteristics and statistical tests used. Five studies looked at transcranial Doppler-based indices and 13 looked at ICP-based indices. All but two studies were able to present a statistically significant association between cerebrovascular pressure reactivity and ICP. Based on the findings of this review, impaired reactivity seems to be associated with elevated ICP and reduced ICP waveform complexity. This relationship may allow for the calculation of patient-specific ICP thresholds, past which cerebrovascular reactivity becomes persistently deranged. However, further work is required to better understand this relationship and improve algorithmic derivation of such individualized ICP thresholds., (© Kevin Y. Stein et al. 2024; Published by Mary Ann Liebert, Inc.)
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- 2024
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37. Peri-ictal Water Drinking in an Omani Patient with Bilateral Mesial Temporal Sclerosis.
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Al-Mufargi Y, Alabri H, and Gujjar A
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- Humans, Male, Oman, Young Adult, Drinking physiology, Sclerosis, Electroencephalography methods, Hippocampal Sclerosis, Epilepsy, Temporal Lobe physiopathology
- Abstract
Peri-ictal water drinking (PIWD) is a rare vegetative manifestation of temporal lobe epilepsy without a definite lateralisation value. We report a case of PIWD in a 22-year-old Omani male patient with post-concussion syndrome and epilepsy presented to a tertiary care hospital in Muscat, Oman, in 2021 for evaluation of paroxysmal events. His behaviour of PIWD was misinterpreted by his family until characterised in the epilepsy-monitoring unit as a manifestation of epilepsy that was treated medically. To the best of the authors' knowledge, this is the second reported case in the region., (© Copyright 2024, Sultan Qaboos University Medical Journal, All Rights Reserved.)
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- 2024
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38. A case report of a lung transplant recipient receiving belatacept in combination with low dose tacrolimus complicated by progressive multifocal leukoencephalopathy.
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C V, B S, M Y, C M, I T, M R, and A E
- Abstract
Belatacept is a novel T-cell costimulation blockade agent that has unresolved controversy in lung transplant recipients. Belatacept has been recognized as a calcineurin sparing agent for solid organ transplant recipients after reported success in renal transplant patients, despite limited evidence in other transplant recipients. We present the first case of a lung transplant recipient receiving Belatacept, in combination with low dose calcineurin inhibitor, who developed progressive multifocal leukoencephalopathy. While Belatacept without calcineurin inhibitor has been associated with increased risk of acute rejection in solid organ transplant recipients, its infectious risk profile in combination with calcineurin inhibitor remains unclear., Competing Interests: None of the authors have conflicts of interests to declare.
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- 2024
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39. Enhanced intramolecular charge transfer and near-infrared fluorescence in 4-dimethylamino-chalcone analogues through extended conjugation: synthesis, photophysical properties, and theoretical modelling.
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Al-Saadi BS, Ibrahim AR, Husband J, Ismail AH, Baqi Y, and Abou-Zied OK
- Abstract
The distinctive characteristics of near-infrared fluorescent organic molecules render them indispensable across diverse applications, from energy harvesting to bioimaging and sensing technologies. In this work, we continue our investigation on the chalcone derivative, 4-dimethylamino-2'-hydroxychalcone ( n DHC, n = 1; where n is the number of olefinic bonds), by expanding the number of central double bonds ( n = 2 (2DHC) and n = 3 (3DHC)). Additionally, we also synthesized the structurally related chalcones lacking the OH group (DC, 2DC, 3DC) in order to obtain a comprehensive understanding of their effects on the intramolecular charge transfer (ICT). The results show remarkable bathochromic shifts in absorption and fluorescence peaks in solution as n increases. These shifts, 20 nm and 35 nm for absorption and 100 nm and 200 nm for fluorescence in 2DHC and 3DHC, respectively, signify enhanced ICT and a significant increase in the excited state's dipole moment. The presence of OH groups notably amplifies these shifts due to additional electron donation, influencing solute-solvent interactions in solution. Femtosecond fluorescence upconversion and transient absoprtion techniques unraveled distinct dynamics in these derivatives, exhibiting the dominance of vibrational cooling, solvation, and intramolecular motions, particularly in the larger conjugated systems 3DHC and 3DC. The observed changes in the femtosecond transinet absorption spectra suggest the existence of new active states in extended conjugation systems, indicating diverse intramolecular conformational states contributing to their relaxation dynamics. The results of this study provide invaluable insights into excited-state spectroscopy, offering a roadmap for tailoring chalcone derivatives for specific applications.
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- 2024
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40. ER stress signaling at the interphase between MASH and HCC.
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Hazari Y, Chevet E, Bailly-Maitre B, and Hetz C
- Abstract
HCC is the most frequent primary liver cancer with an extremely poor prognosis and often develops on preset of chronic liver diseases. Major risk factors for HCC include metabolic dysfunction-associated steatohepatitis, a complex multifactorial condition associated with abnormal endoplasmic reticulum (ER) proteostasis. To cope with ER stress, the unfolded protein response engages adaptive reactions to restore the secretory capacity of the cell. Recent advances revealed that ER stress signaling plays a critical role in HCC progression. Here, we propose that chronic ER stress is a common transversal factor contributing to the transition from liver disease (risk factor) to HCC. Interventional strategies to target the unfolded protein response in HCC, such as cancer therapy, are also discussed., (Copyright © 2024 American Association for the Study of Liver Diseases.)
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- 2024
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41. Near-Infrared Spectroscopy Regional Oxygen Saturation Based Cerebrovascular Reactivity Assessments in Chronic Traumatic Neural Injury versus in Health: A Prospective Cohort Study.
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Gomez A, Marquez I, Froese L, Bergmann T, Sainbhi AS, Vakitbilir N, Islam A, Stein KY, Ibrahim Y, and Zeiler FA
- Abstract
Near-infrared spectroscopy (NIRS) regional cerebral oxygen saturation (rSO
2 )-based cerebrovascular reactivity (CVR) monitoring has enabled entirely non-invasive, continuous monitoring during both acute and long-term phases of care. To date, long-term post-injury CVR has not been properly characterized after acute traumatic neural injury, also known as traumatic brain injury (TBI). This study aims to compare CVR in those recovering from moderate-to-severe TBI with a healthy control group. A total of 101 heathy subjects were recruited for this study, along with 29 TBI patients. In the healthy cohort, the arterial blood pressure variant of the cerebral oxygen index (COx_a) was not statistically different between males and females or in the dominant and non-dominant hemispheres. In the TBI cohort, COx_a was not statistically different between the first and last available follow-up or by the side of cranial surgery. Surprisingly, CVR, as measured by COx_a, was statistically better in those recovering from TBI than those in the healthy cohort. In this prospective cohort study, CVR, as measured by NIRS-based methods, was found to be more active in those recovering from TBI than in the healthy cohort. This study may indicate that in individuals that survive TBI, CVR may be enhanced as a neuroprotective measure.- Published
- 2024
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42. Exploring opportunities of Artificial Intelligence in aquaculture to meet increasing food demand.
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Ashraf Rather M, Ahmad I, Shah A, Ahmad Hajam Y, Amin A, Khursheed S, Ahmad I, and Rasool S
- Abstract
The increasing global population drives a rising demand for food, particularly fish as a preferred protein source, straining capture fisheries. Overfishing has depleted wild stocks, emphasizing the need for advanced aquaculture technologies. Unlike agriculture, aquaculture has not seen substantial technological advancements. Artificial Intelligence (AI) tools like Internet of Things (IoT), machine learning, cameras, and algorithms offer solutions to reduce human intervention, enhance productivity, and monitor fish health, feed optimization, and water resource management. However, challenges such as data collection, standardization, model accuracy, interpretability, and integration with existing aquaculture systems persist. This review explores the adoption of AI techniques and tools to advance the aquaculture industry and bridge the gap between food supply and demand., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Author(s).)
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- 2024
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43. Ventriculoperitoneal shunt entry points in patients undergoing shunt placement: A single-center study.
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Baregzai Y, Al-Salihi MM, Al Hajali A, Hammadi F, and Ayyad A
- Abstract
Background: The ventriculoperitoneal (VP) shunt redirects cerebrospinal fluid flow, with the selection of entry points crucial for optimal outcomes. Anatomical landmarks and specific entry points, such as Kocher's, Frazier's, Keen's, and Dandy's points, have been utilized for shunt catheter placement. This study investigates the impact of various entry points on outcomes, particularly the necessity for revision procedures, in patients undergoing VP shunt placement., Methods: In this retrospective cohort study, we analyzed data from patients in our center's database, collected from October 2017 to October 2022. Participants were classified based on ventriculoperitoneal shunt entry points. The study followed STROBE guidelines. Continuous variables were presented as means with standard deviations (SD) and categorical variables as frequencies and percentages. Linear Model ANOVA and Pearson's Chi-squared tests were used for comparisons. Data analysis was conducted using Jamovi software., Results: Our study included 94 patients who underwent shunt procedures. The patients were categorized into four treatment groups: Dandy point (10), Frazier point (21), Keen point (43), and Kocher point (20)., Conclusion: Our study found no significant differences in age, FOHR, and indication for shunt placement among catheter entry point subgroups. However, gender distribution, catheter length, and catheter tip location significantly varied. The proportion of patients requiring revision surgery varied among the groups, with the highest rate in the Dandy point group and the lowest in the Keen group; however, the difference among the entry groups was insignificant., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Author(s).)
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- 2024
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44. Computed-tomography evaluation of parietal foramen topography in adults: a retrospective analysis.
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Al-Shuaili A, Al-Ajmi E, Mogali SR, Al-Qasmi S, Al-Mufargi Y, Kariyattil R, and Sirasanagandla SR
- Subjects
- Male, Adult, Humans, Female, Middle Aged, Aged, Retrospective Studies, Superior Sagittal Sinus, Head, Sphenoid Bone, Tomography, X-Ray Computed
- Abstract
Background: The parietal foramen (PF) of the skull is a variable anatomic feature with important implications for venous drainage, infection, and injury. Its topography is clinically relevant for neurosurgeons for intracranial navigation and preoperative planning., Methods: PF topography was investigated in a series of 440 head computed-tomography scans of Omani subjects at Sultan Qaboos University Hospital. The mean age of the patients was 52 ± 17 years and there were 160 males and 280 females. The topography features of the PF, including frequency, diameter, patency, and relative position in relation to the superior sagittal sinus (SSS), were recorded. Additionally, sex and laterality differences in PF parameters were analyzed using a Chi-square test., Results: The overall prevalence of PF was 72.3% (318/440). The bilateral presence of PF was identified in 34% of skulls. Unilateral right-side prevalence was 18.2%, while left prevalence was 13.2% (p = 0.62). The prevalence of unilateral accessory PF on the right side was 1.8%, while it was 1.1% on the left (p = 0.69). PF within the sagittal suture/or intra-sutural PF was observed in 6.8% of skulls, with a frequency of 9.4% in men and 5.4% in women (p = 0.29). The diameter of the PF was 1.45 ± 0.74 mm on the right side, and 1.54 ± 0.99 mm on the left side (p = 0.96). There were 2% of incomplete PF. The PF was located over the SSS in 70.3% on the right side and 53.8% on the left side. No significant differences were observed between the PF topography parameters and sex or laterality., Conclusion: The present study for the first time reports the baseline data of PF topography in a large sample of CT scans in the Arab population. The geography and race influence the PF topography differences. PF may be used as a reliable landmark of SSS. The morphological characteristics and distribution of PF reported in this study have clinical implications for imaging diagnosis, intracranial navigation of vascular disorders, and treatment., (© 2024. The Author(s), under exclusive licence to Springer-Verlag France SAS, part of Springer Nature.)
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- 2024
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45. Elucidating the EXOSC3-IRE1α interaction: a convergent study incorporating computational, in vitro and in vivo studies.
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Ashraf A, Majeed Y, Gul I, Banday M, Ramzan K, and Fazili KM
- Abstract
The Unfolded protein response (UPR) is an adaptive signalling pathway which is triggered by accumulation of unfolded/misfolded protein in ER lumen. The UPR consist of three transmembrane proteins-IRE1α, PERK and ATF6 that sense ER stress which leads to activation and downstream signaling from ER lumen to cytosol to restore homeostasis. IRE1α is an evolutionary conserved arm of UPR and acts as an interaction platform for many potential proteins that become activated under ER stress conditions. We investigated potential partners of IRE1 α through MS studies and found EXOSC3 as one of the binding partner of IRE1α. Exosomal complex proteins have 3'5' exonuclease properties (EXOSC3) that play an important role in mRNA surveillance. This property of exosomal proteins coincides with IRE1α ribonuclease activities and its mechanism of action is similar to that of IRE1α-RIDD pathway which degrades any unstable mRNA that disrupts cellular homeostasis. At the same time, studies have shown that knockdown of EXOSC3 causes ER stress in human cells, so we speculated that there might be a functional crosstalk between IRE1α and EXOSC3 under ER stress conditions. Therefore, we employed computational tools to predict and explore the stability and dynamics of the IRE1α-EXOSC3 complex. The analysis indicates that IRE1α and EXOSC3 exhibit potential interaction with the involvement of ScanNet, predicting binding pockets between the two proteins. Further, the interaction was validated via co-immunoprecipitation and yeast two-hybrid assays, thus suggesting EXOSC3 as a component of the UPRosome complex. Hence, this functional crosstalk might influence the dynamic functional output of IRE1α.Communicated by Ramaswamy H. Sarma.
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- 2024
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46. Time-Series Modeling and Forecasting of Cerebral Pressure-Flow Physiology: A Scoping Systematic Review of the Human and Animal Literature.
- Author
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Vakitbilir N, Froese L, Gomez A, Sainbhi AS, Stein KY, Islam A, Bergmann TJG, Marquez I, Amenta F, Ibrahim Y, and Zeiler FA
- Subjects
- Animals, Humans, Brain Injuries, Traumatic
- Abstract
The modeling and forecasting of cerebral pressure-flow dynamics in the time-frequency domain have promising implications for veterinary and human life sciences research, enhancing clinical care by predicting cerebral blood flow (CBF)/perfusion, nutrient delivery, and intracranial pressure (ICP)/compliance behavior in advance. Despite its potential, the literature lacks coherence regarding the optimal model type, structure, data streams, and performance. This systematic scoping review comprehensively examines the current landscape of cerebral physiological time-series modeling and forecasting. It focuses on temporally resolved cerebral pressure-flow and oxygen delivery data streams obtained from invasive/non-invasive cerebral sensors. A thorough search of databases identified 88 studies for evaluation, covering diverse cerebral physiologic signals from healthy volunteers, patients with various conditions, and animal subjects. Methodologies range from traditional statistical time-series analysis to innovative machine learning algorithms. A total of 30 studies in healthy cohorts and 23 studies in patient cohorts with traumatic brain injury (TBI) concentrated on modeling CBFv and predicting ICP, respectively. Animal studies exclusively analyzed CBF/CBFv. Of the 88 studies, 65 predominantly used traditional statistical time-series analysis, with transfer function analysis (TFA), wavelet analysis, and autoregressive (AR) models being prominent. Among machine learning algorithms, support vector machine (SVM) was widely utilized, and decision trees showed promise, especially in ICP prediction. Nonlinear models and multi-input models were prevalent, emphasizing the significance of multivariate modeling and forecasting. This review clarifies knowledge gaps and sets the stage for future research to advance cerebral physiologic signal analysis, benefiting neurocritical care applications.
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- 2024
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47. Incidence and risk factors of prostate cancer among the Northern and Eastern parts of the United Arab Emirates population.
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Al Shareef Z, Al-Shahrabi R, Saheb Sharif-Askari F, AlDhmanie A, Alshamsi Y, Zarooni AA, Mahmoud RA, Soliman SSM, Halwani R, and Bendardaf R
- Subjects
- Male, Humans, Aged, Aged, 80 and over, Incidence, United Arab Emirates epidemiology, Retrospective Studies, Risk Factors, Glycation End Products, Advanced, Prostatic Hyperplasia epidemiology, Prostatic Hyperplasia drug therapy, Prostatic Neoplasms epidemiology
- Abstract
Background: Prostate cancer (PCa) is a prevalent disease worldwide. However, the incidence and patient-specific risk factors of PCa in the Middle East, specifically in the United Arab Emirates, have not been previously reported., Methods: We conducted a retrospective cohort study on 2377 men diagnosed with either benign prostatic hyperplasia (BPH) or PCa in the Northern and Eastern regions of the United Arab Emirates, excluding the Western part, which includes Abu Dhabi. The study spanned from January 2012 and December 2021. To calculate the PCa incidence rate, we utilized the world age-standardized incidence rates (W-ASIR) categorized by age groups. Patient-specific risk factors of PCa were identified through a multivariate logistic regression analysis of clinical data., Results: A total of 247 cases of PCa and 2130 cases of BPH were included in the study. In our cohort, the W-ASIR for PCa was 21.3 per 100,000 men. The incidence of PCa showed an increasing trend with age, with the highest incidence observed among men aged 70 years and older. Accordingly, multivariate analysis revealed that age over 70 was associated with an increased risk of PCa (OR: 2.546, 95% confidence interval [CI]: 1.892-3.425, p < 0.01). On the other hand, preexisting conditions such as hypertension and diabetes mellitus were found to lower the risk of PCa (OR: 0.222, 95% CI: 0.163-0.302, p < 0.001) and (OR: 0.364, 95% CI: 0.205-0.648, p < 0.001), respectively. Additionally, metformin intake was associated with a reduced risk of PCa (OR: 0.385, 95% CI: 0.190-0.782, p = 0.008); while insulin usage increased the risk of PCa (OR: 2.586, 95% CI: 1.539-4.344, p < 0.001). Anti-BPH medications such as phosphodiesterase inhibitors (OR: 0.223, 95% CI: 0.069-0.723, p = 0.012) or 5-α reductase (OR: 0.206, 95% CI: 0.110-0.389, p < 0.000), were found to lower the risk of PCa., Conclusion: The findings underscore the high incidence of PCa in the United Arab Emirates, with age being a significant factor. Furthermore, the study highlights the influence of certain comorbidities and medications on the risk of developing PCa within the United Arab Emirates population., (© 2023 Wiley Periodicals LLC.)
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- 2024
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48. Non-Invasive Estimation of Intracranial Pressure-Derived Cerebrovascular Reactivity Using Near-Infrared Spectroscopy Sensor Technology in Acute Neural Injury: A Time-Series Analysis.
- Author
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Gomez A, Froese L, Bergmann TJG, Sainbhi AS, Vakitbilir N, Islam A, Stein KY, Marquez I, Ibrahim Y, and Zeiler FA
- Subjects
- Humans, Retrospective Studies, Research Design, Technology, Intracranial Pressure, Spectroscopy, Near-Infrared
- Abstract
The contemporary monitoring of cerebrovascular reactivity (CVR) relies on invasive intracranial pressure (ICP) monitoring which limits its application. Interest is shifting towards near-infrared spectroscopic regional cerebral oxygen saturation (rSO
2 )-based indices of CVR which are less invasive and have improved spatial resolution. This study aims to examine and model the relationship between ICP and rSO2 -based indices of CVR. Through a retrospective cohort study of prospectively collected physiologic data in moderate to severe traumatic brain injury (TBI) patients, linear mixed effects modeling techniques, augmented with time-series analysis, were utilized to evaluate the ability of rSO2 -based indices of CVR to model ICP-based indices. It was found that rSO2 -based indices of CVR had a statistically significant linear relationship with ICP-based indices, even when the hierarchical and autocorrelative nature of the data was accounted for. This strengthens the body of literature indicating the validity of rSO2 -based indices of CVR and potential greatly expands the scope of CVR monitoring.- Published
- 2024
- Full Text
- View/download PDF
49. Electron ionization fragmentation studies for a series of 4-methoxymethylene benzoate esters.
- Author
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Abiedalla Y and Clark CR
- Abstract
Rationale: Product ion studies and stable isotope deuterium labeling experiments provide useful data for understanding the electron ionization (EI)-mass spectroscopy (MS) fragmentation of methoxymethylene substituted benzoate esters. The methoxymethylene ether is regioisomeric with the ethoxy group and represents the two possible ether substituents of a benzene ring of C
2 H5 O. Structural confirmation of these synthetic precursor materials via gas chromatography (GC)-EI-MS revealed unexpected fragment ions. The synthesis and EI-MS evaluation of some homologs and deuterated derivatives allowed for the characterization of these unique ions and their fragmentation pathways. The relative effects of the position of the oxygen of the ether side chain are the subject of this investigation., Methods: The desired compounds were prepared from 4-chloromethylbenzoyl chloride by alkoxide displacement followed by transesterifications and the deuterated analogs were prepared similarly. The compounds were separated by capillary GC and their MS fragmentation evaluated in EI, MS/MS and chemical ionization experiments., Results: The methoxymethylene-substituted benzoate esters yield major fragment ions from the loss of the alkyl group from the ether as well as alkoxy group loss from the ester or ether portion of the molecule. The loss of the alkyl group from the ether followed by loss of the ester alkoxy group as the corresponding alcohol yielded the unique cation at m/z 133 for all compounds. The identity of the major ions was confirmed by product ion and deuterium labeling studies and possible mechanisms of fragment ion formation are described., Conclusions: The aliphatic oxygen of the alkoxymethylene group plays a much more active role in the EI-MS fragment formation profile than the direct aromatic ring linked oxygen of the ethoxy group. Thus, yielding a greater variety of characteristic fragments. The m/z 133 ion is unique to this class of compounds and does not have an equivalent pathway for the regioisomeric ethoxy series., (© 2023 John Wiley & Sons Ltd.)- Published
- 2023
- Full Text
- View/download PDF
50. Evaluation of Morlet Wavelet Analysis for Artifact Detection in Low-Frequency Commercial Near-Infrared Spectroscopy Systems.
- Author
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Bergmann T, Froese L, Gomez A, Sainbhi AS, Vakitbilir N, Islam A, Stein K, Marquez I, Amenta F, Park K, Ibrahim Y, and Zeiler FA
- Abstract
Regional cerebral oxygen saturation (rSO
2 ), a method of cerebral tissue oxygenation measurement, is recorded using non-invasive near-infrared Spectroscopy (NIRS) devices. A major limitation is that recorded signals often contain artifacts. Manually removing these artifacts is both resource and time consuming. The objective was to evaluate the applicability of using wavelet analysis as an automated method for simple signal loss artifact clearance of rSO2 signals obtained from commercially available devices. A retrospective observational study using existing populations (healthy control (HC), elective spinal surgery patients (SP), and traumatic brain injury patients (TBI)) was conducted. Arterial blood pressure (ABP) and rSO2 data were collected in all patients. Wavelet analysis was determined to be successful in removing simple signal loss artifacts using wavelet coefficients and coherence to detect signal loss artifacts in rSO2 signals. The removal success rates in HC, SP, and TBI populations were 100%, 99.8%, and 99.7%, respectively (though it had limited precision in determining the exact point in time). Thus, wavelet analysis may prove to be useful in a layered approach NIRS signal artifact tool utilizing higher-frequency data; however, future work is needed.- Published
- 2023
- Full Text
- View/download PDF
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