34 results on '"Young Geol, Yoon"'
Search Results
2. Combination of berberine and silibinin improves lipid metabolism and anti-obesity efficacy in high-fat diet-fed obese mice
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Young Hoon Choi, Jin Hyung Lee, and Young Geol Yoon
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medicine.medical_specialty ,Organic Chemistry ,Silibinin ,Bioengineering ,Lipid metabolism ,High fat diet ,chemistry.chemical_compound ,Berberine ,Endocrinology ,chemistry ,Internal medicine ,Anti obesity ,medicine ,Obese Mice - Published
- 2021
3. Improvement of testosterone deficiency by fermented Momordica charantia extracts in aging male rats
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Young Geol Yoon, Kyeong Soo Lee, Hyun Pyo Kim, and Hyun Jin Park
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0106 biological sciences ,medicine.medical_specialty ,Globulin ,Biology ,01 natural sciences ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Testosterone deficiency ,010608 biotechnology ,Internal medicine ,medicine ,Testosterone ,Momordica ,Triglyceride ,Aging male ,04 agricultural and veterinary sciences ,biology.organism_classification ,040401 food science ,Endocrinology ,chemistry ,biology.protein ,Fermentation ,Lactobacillus plantarum ,Food Science ,Biotechnology - Abstract
This study evaluated the efficacy of Momordica charantia (MC; bitter melon) extracts against andropause symptoms. We fermented MC with Lactobacillus plantarum and verified the ability of the fermented MC extracts (FMEs) to control testosterone deficiency by using aging male rats as an animal model of andropause. FME administration considerably increased total and free testosterone levels, muscle mass, forced swimming time, and total and motile sperm counts in aging male rats. In contrast, sex hormone-binding globulin, retroperitoneal fat, serum cholesterol, and triglyceride levels were significantly reduced in the treated groups compared to the non-treated control aging male rats. Furthermore, we observed that FME enhanced the expression of testosterone biosynthesis-related genes but reduced the expression of testosterone degradation-related genes in a mouse Leydig cell line. These results suggest that FME has effective pharmacological activities that increase and restore free testosterone levels and that FME may be employed as a promising natural product for alleviating testosterone deficiency syndrome.
- Published
- 2021
4. Intramitochondrial transfer and engineering of mammalian mitochondrial genomes in yeast
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Young Geol Yoon and Michael D. Koob
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DNA Replication ,0301 basic medicine ,Mitochondrial DNA ,Nuclear gene ,Mitochondrion ,Biology ,DNA, Mitochondrial ,Genome ,Genomic Instability ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Yeasts ,Animals ,Transgenes ,Molecular Biology ,Genetics ,Organisms, Genetically Modified ,Cell Biology ,Yeast ,030104 developmental biology ,Genome, Mitochondrial ,Molecular Medicine ,Homologous recombination ,030217 neurology & neurosurgery ,MtDNA replication - Abstract
Mitochondrial genomes (mtDNA) depend on the nuclear genome with which they have evolved to provide essential replication functions and have been known to replicate as xenotransplants only in the cells of closely related species. We now report that complete mouse mitochondrial genomes can be stably transplanted into the mitochondrial network in yeast devoid of their own mtDNA. Our analyses of these xenomitochondrial yeast cells show that they are accurately replicating intact mouse mtDNA genomes without rearrangement and that these mtDNA genomes have the same overall topology as the mtDNA present in the mouse mitochondrial network (i.e., circular monomers). Moreover, non-mtDNA replication and selection sequences required for maintaining the mitochondrial genomes in bacterial hosts are dispensable in these yeast mitochondria and could be efficiently and seamlessly removed by targeted homologous recombination within the mitochondria. These findings demonstrate that the yeast mtDNA replication system is capable of accurately replicating intact mammalian mtDNA genomes without sequence loss or rearrangement and that yeast mitochondria are a highly versatile host system for engineering complete mammalian mitochondrial genomes.
- Published
- 2019
5. Transfer of Xenomitochondria Containing the Entire Mouse Mitochondrial Genome into a Genetically Modified Yeast Expressing Mitochondrial Transcription Factor A
- Author
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Young Geol Yoon
- Subjects
Mitochondrial DNA ,Saccharomyces cerevisiae Proteins ,Saccharomyces cerevisiae ,Mitochondrion ,Biology ,Applied Microbiology and Biotechnology ,Genome ,DNA, Mitochondrial ,Genomic Instability ,Mitochondrial Proteins ,Mice ,Animals ,Mitochondrial nucleoid ,Recombination, Genetic ,Genetic Complementation Test ,General Medicine ,TFAM ,Spheroplast ,Yeast ,Recombinant Proteins ,Genetically modified organism ,Cell biology ,Mitochondria ,DNA-Binding Proteins ,Genome, Mitochondrial ,Biotechnology ,Transcription Factors - Abstract
Recently, it was reported that entire mammalian mtDNA genomes could be transplanted into the mitochondrial networks of yeast, where they were accurately and stably maintained without rearrangement as intact genomes. Here, it was found that engineered mtDNA genomes could be readily transferred to and steadily maintained in the mitochondria of genetically modified yeast expressing the mouse mitochondrial transcription factor A (Tfam), one of the mitochondrial nucleoid proteins. The transferred mtDNA genomes were stably retained in the Tfam-expressing yeast cells for many generations. These results indicated that the engineered mouse mtDNA genomes introduced in yeast mitochondria could be relocated into the mitochondria of other cells and that the transferred genomes could be maintained within a mitochondrial environment that is highly amenable to mimicry of the biological conditions in mammalian mitochondria.
- Published
- 2020
6. Improvement of testosterone deficiency by fermented
- Author
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Kyeong Soo, Lee, Hyun Pyo, Kim, Hyun Jin, Park, and Young Geol, Yoon
- Subjects
Research Article - Abstract
This study evaluated the efficacy of Momordica charantia (MC; bitter melon) extracts against andropause symptoms. We fermented MC with Lactobacillus plantarum and verified the ability of the fermented MC extracts (FMEs) to control testosterone deficiency by using aging male rats as an animal model of andropause. FME administration considerably increased total and free testosterone levels, muscle mass, forced swimming time, and total and motile sperm counts in aging male rats. In contrast, sex hormone-binding globulin, retroperitoneal fat, serum cholesterol, and triglyceride levels were significantly reduced in the treated groups compared to the non-treated control aging male rats. Furthermore, we observed that FME enhanced the expression of testosterone biosynthesis-related genes but reduced the expression of testosterone degradation-related genes in a mouse Leydig cell line. These results suggest that FME has effective pharmacological activities that increase and restore free testosterone levels and that FME may be employed as a promising natural product for alleviating testosterone deficiency syndrome. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10068-020-00872-x.
- Published
- 2020
7. Cytoplasmic and nuclear anti-apoptotic roles of αB-crystallin in retinal pigment epithelial cells.
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Woo Jin Jeong, Jee Hyun Rho, Young Geol Yoon, Seung Hee Yoo, Na Young Jeong, Won Yeol Ryu, Hee Bae Ahn, Woo Chan Park, Sae Heun Rho, Hee Seong Yoon, Yung Hyun Choi, and Young Hyun Yoo
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Medicine ,Science - Abstract
In addition to its well-characterized role in the lens, αB-crystallin performs other functions. Methylglyoxal (MGO) can alter the function of the basement membrane of retinal pigment epithelial (RPE) cells. Thus, if MGO is not efficiently detoxified, it can induce adverse reactions in RPE cells. In this study, we examined the mechanisms underlying the anti-apoptotic activity of αB-crystallin in the human retinal pigment epithelial cell line ARPE-19 following MGO treatment using various assays, including nuclear staining, flow cytometry, DNA electrophoresis, pulse field gel electrophoresis, western blot analysis, confocal microscopy and co-immunoprecipitation assays. To directly assess the role of phosphorylation of αB-crystallin, we used site-directed mutagenesis to convert relevant serine residues to alanine residues. Using these techniques, we demonstrated that MGO induces apoptosis in ARPE-19 cells. Silencing αB-crystallin sensitized ARPE-19 cells to MGO-induced apoptosis, indicating that αB-crystallin protects ARPE-19 cells from MGO-induced apoptosis. Furthermore, we found that αB-crystallin interacts with the caspase subtypes, caspase-2L, -2S, -3, -4, -7, -8, -9 and -12 in untreated control ARPE-19 cells and that MGO treatment caused the dissociation of these caspase subtypes from αB-crystallin; transfection of S19A, S45A or S59A mutants caused the depletion of αB-crystallin from the nuclei of untreated control RPE cells leading to the release of caspase subtypes. Additionally, transfection of these mutants enhanced MGO-induced apoptosis in ARPE-19 cells, indicating that phosphorylation of nuclear αB-crystallin on serine residues 19, 45 and 59 plays a pivotal role in preventing apoptosis in ARPE-19 cells. Taken together, these results suggest that αB-crystallin prevents caspase activation by physically interacting with caspase subtypes in the cytoplasm and nucleus, thereby protecting RPE cells from MGO-induced apoptosis.
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- 2012
- Full Text
- View/download PDF
8. Fractionated Coptis chinensis Extract and Its Bioactive Component Suppress Propionibacterium acnes-Stimulated Inflammation in Human Keratinocytes
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Yoon Joong Kang, Hyun Kyung Choi, Jin Wook Lee, and Young Geol Yoon
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biology ,Chemistry ,p38 mitogen-activated protein kinases ,Interleukin ,General Medicine ,Pharmacology ,Coptis chinensis ,biology.organism_classification ,030226 pharmacology & pharmacy ,Applied Microbiology and Biotechnology ,Proinflammatory cytokine ,03 medical and health sciences ,chemistry.chemical_compound ,Propionibacterium acnes ,HaCaT ,0302 clinical medicine ,Berberine ,030220 oncology & carcinogenesis ,Tumor necrosis factor alpha ,Biotechnology - Abstract
Coptis chinensis (CC) is widely used in Asian countries to treat inflammatory diseases. We investigated the anti-inflammatory activity of the aqueous fraction separated from CC extract and of berberine, its key bioactive component, in human keratinocytes and the possible molecular mechanisms underlying this. Treating HaCaT keratinocytic cells with heat-killed Propionibacterium acnes induced nitric oxide and proinflammatory cytokine (e.g., tumor necrosis factor-α, interleukin (IL)-1β, and IL-8) production and their mRNA expression; these effects were suppressed by pretreatment with the aqueous fraction or berberine, which also suppressed the phosphorylation of ERK, JNK, and p38 kinases and the nuclear expression of nuclear factor (NF)-κB p65 in P. acnes-stimulated cells. Thus, the aqueous fraction and berberine effectively exerted anti-inflammatory activities by suppressing mitogen-activated protein kinase and NF-κB signaling pathways in human keratinocytes and may be used for treating P. acnes-induced inflammatory skin diseases.
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- 2018
9. Downregulation of protein kinase CK2 activity facilitates tumor necrosis factor-α-mediated chondrocyte death through apoptosis and autophagy.
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Sung Won Lee, Yeon Suk Song, Sang Yeob Lee, Young Geol Yoon, Sang Hwa Lee, Bong Soo Park, Il Yun, Hyantae Choi, Kunhong Kim, Won Tae Chung, and Young Hyun Yoo
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Medicine ,Science - Abstract
Despite the numerous studies of protein kinase CK2, little progress has been made in understanding its function in chondrocyte death. Our previous study first demonstrated that CK2 is involved in apoptosis of rat articular chondrocytes. Recent studies have suggested that CK2 downregulation is associated with aging. Thus examining the involvement of CK2 downregulation in chondrocyte death is an urgently required task. We undertook this study to examine whether CK2 downregulation modulates chondrocyte death. We first measured CK2 activity in articular chondrocytes of 6-, 21- and 30-month-old rats. Noticeably, CK2 activity was downregulated in chondrocytes with advancing age. To build an in vitro experimental system for simulating tumor necrosis factor (TNF)-α-induced cell death in aged chondrocytes with decreased CK2 activity, chondrocytes were co-treated with CK2 inhibitors and TNF-α. Viability assay demonstrated that CK2 inhibitors facilitated TNF-α-mediated chondrocyte death. Pulsed-field gel electrophoresis, nuclear staining, flow cytometry, TUNEL staining, confocal microscopy, western blot and transmission electron microscopy were conducted to assess cell death modes. The results of multiple assays showed that this cell death was mediated by apoptosis. Importantly, autophagy was also involved in this process, as supported by the appearance of a punctuate LC3 pattern and autophagic vacuoles. The inhibition of autophagy by silencing of autophage-related genes 5 and 7 as well as by 3-methyladenine treatment protected chondrocytes against cell death and caspase activation, indicating that autophagy led to the induction of apoptosis. Autophagic cells were observed in cartilage obtained from osteoarthritis (OA) model rats and human OA patients. Our findings indicate that CK2 down regulation facilitates TNF-α-mediated chondrocyte death through apoptosis and autophagy. It should be clarified in the future if autophagy observed is a consequence versus a cause of the degeneration in vivo.
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- 2011
- Full Text
- View/download PDF
10. Fractionated
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Jin Wook, Lee, Yoon Joong, Kang, Hyun Kyung, Choi, and Young Geol, Yoon
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Inflammation ,Keratinocytes ,Berberine ,Plant Extracts ,Gene Expression Profiling ,Anti-Inflammatory Agents ,Humans ,Immunologic Factors ,Propionibacterium acnes ,Nitric Oxide ,Cell Line ,Coptis - Published
- 2018
11. The Efficacy of Lowering Blood Glucose Levels Using the Extracts of Fermented Bitter Melon in the Diabetic Mice
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Woo Kyeong Kim, Young Geol Yoon, Hye Seon Park, and Hyun Pyo Kim
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Antioxidant ,Momordica ,biology ,Cholesterol ,medicine.medical_treatment ,Organic Chemistry ,food and beverages ,Bioengineering ,medicine.disease ,biology.organism_classification ,humanities ,Lactic acid ,chemistry.chemical_compound ,stomatognathic system ,chemistry ,Biochemistry ,Diabetes mellitus ,Alloxan ,medicine ,Fermentation ,Food science ,Glycemic - Abstract
Momordica charantia, commonly known as bitter melon, has interesting pharmacological activities such as anticancer, antiviral, antibacterial, anti-inflammatory, analgesic, and antioxidant. As supported by recent scientific reports on the beneficial effects of M. charantia, it is one of the most promising functional plants for diabetes today. In this study, we fermented the bitter melon with lactic acid bacteria and investigated the capability of controlling diabetic conditions by decreasing the blood glucose levels. After extracting the fermented bitter melon with hot water or ethanol, we tested several biological activities using mouse models. When we tested the efficacy of the glycemic control, the extracts of fermented bitter melon significantly lowered the blood glucose levels of the alloxan-induced diabetic mice. We also found that the lactic acid bacteria-fermented bitter melon protected liver damages from the treatment of alloxan monohydrates and maintained low levels of triglycerides and high levels of HDL cholesterol in these mouse models. These results suggest that our approach on fermenting bitter melon and the extracts of fermented bitter melon could lead to the possibility of the development of functional foods that contain the effectiveness of controlling blood glucose and lipid levels as well as preventing liver damages.
- Published
- 2015
12. Rapid Isolation of Mitochondrial DNA-Depleted Mammalian Cells by Ethidium Bromide and Dideoxycytidine Treatments
- Author
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Yoo Jin Oh, Young Geol Yoon, and Young Hyun Yoo
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Mitochondrial DNA ,Cell type ,Organic Chemistry ,Bioengineering ,Mitochondrion ,Isolation (microbiology) ,Molecular biology ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,medicine ,Platelet ,Short exposure ,Ethidium bromide ,Nucleus - Abstract
Mitochondrial DNA (mtDNA)-depleted () cells are often used as mtDNA recipients to study the interaction between the nucleus and mitochondria in mammalian cells. Therefore, it is crucial to obtain mtDNA-depleted cells with many different nuclear backgrounds for the study. Here, we demonstrate a rapid and reliable method to isolate mammalian mtDNA-depleted cells involving treatment with the antimitochondrial agents ethidium bromide (EtBr) and 2`,3`-dideoxycytidine (ddC). After a short exposure to EtBr or ddC, followed by rapid clonal isolation, we were able to generate viable mtDNA-depleted cells from mouse and human cells and were able to successfully repopulate them with exogenous mitochondria from platelets isolated from mouse and human blood samples. These mtDNA-depleted cells can be used to characterize the nuclear mitochondrial interactions and to study mtDNA-associated defects in mammalian cells. Our method of isolating mtDNA-depleted cells is practical and applicable to a variety of cell types.
- Published
- 2014
13. Synthesis of frataxin genes by direct assembly of serial deoxyoligonucleotide primers and its expression in Escherichia coli
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Chan Bae Park, Michael D. Koob, Sun Hee Park, Chunlan Yan, Jee Suk Lee, Young Geol Yoon, and Young Hyun Yoo
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Genetics ,Biomedical Engineering ,Bioengineering ,Mitochondrion ,Biology ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Yeast ,law.invention ,Mitochondrial respiratory chain ,Biochemistry ,law ,Recombinant DNA ,Frataxin ,biology.protein ,Protein biosynthesis ,medicine ,Gene ,Escherichia coli ,Biotechnology - Abstract
Frataxin, a small nuclear-encoded protein targeted to mitochondria, is known to play an important role in both the mitochondrial respiratory chain and iron homeostasis. The protein is highly conserved in most eukaryotic organisms with no major structural changes, suggesting that it serves a crucial function in all organisms. Recently, purified frataxin was used as a therapeutic treatment of Friedreich’s ataxia, a common degenerative disorder that results from a frataxin protein deficiency, by directly applying the protein to the diseased cells. In this report, we describe a novel and rapid method of synthesizing genes encoding frataxin proteins for the purpose of efficient protein production. The artificial yeast and human frataxin genes were synthesized by direct assembly of serial deoxyoligonucleotide primers designed based on the optimal nucleotide sequences. When we tested the expression of these synthetic genes in two E. coli host strains, the yeast frataxin gene was expressed 20 folds higher in Rosetta (DE3) cells than in BL21 (DE3) cells, whereas the expression levels of human frataxin were similar in both E. coli strains. Attenuation of the Fenton reactions by the purified yeast and human frataxin proteins was observed under the defined conditions, which suggests that the recombinant frataxin proteins are active and functional. The procedure described here could be applied to many known genes or to generate novel synthetic genes that can be redesigned by arranging functional domains from previously identified genes and to study the structure and function of synthetic recombinant proteins and potential usage.
- Published
- 2013
14. The targeted inhibition of mitochondrial Hsp90 overcomes the apoptosis resistance conferred by Bcl-2 in Hep3B cells via necroptosis
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Yoo Jin Oh, Hye Young Kim, Joon Seok Oh, Min Seok Jang, Sang Yeob Lee, Jun Yang, Jee Suk Lee, Chunlan Yan, Seung Hee Yoo, Young Geol Yoon, Young Hyun Yoo, and Sang Hwa Lee
- Subjects
Programmed cell death ,Necrosis ,Cell Survival ,Lactams, Macrocyclic ,Necroptosis ,Cell ,Apoptosis ,Mitochondrion ,Biology ,Toxicology ,Guanidines ,Drug Delivery Systems ,medicine ,Humans ,HSP90 Heat-Shock Proteins ,Pharmacology ,Dose-Response Relationship, Drug ,U937 cell ,Autophagy ,U937 Cells ,digestive system diseases ,Mitochondria ,Cell biology ,medicine.anatomical_structure ,Proto-Oncogene Proteins c-bcl-2 ,medicine.symptom - Abstract
Previous studies have reported that a Gamitrinib variant containing triphenylphosphonium (G-TPP) binds to mitochondrial Hsp90 and rapidly inhibits its activity, thus inducing the apoptotic pathway in the cells. Accordingly, G-TPP shows a potential as a promising drug for the treatment of cancer. A cell can die from different types of cell death such as apoptosis, necrosis, necroptosis, and autophagic cell death. In this study, we further investigated the mechanisms and modes of cell death in the G-TPP-treated Hep3B and U937 cell lines. We discovered that G-TPP kills the U937 cells through the apoptotic pathway and the overexpression of Bcl-2 significantly inhibits U937 cell death to G-TPP. We further discovered that G-TPP kills the Hep3B cells by activating necroptosis in combination with the partial activation of caspase-dependent apoptosis. Importantly, G-TPP overcomes the apoptosis resistance conferred by Bcl-2 in Hep3B cells via necroptosis. We also observed that G-TPP induces compensatory autophagy in the Hep3B cell line. We further found that whereas there is a Bcl-2-Beclin 1 interaction in response to G-TPP, silencing the beclin 1 gene failed to block LC3-II accumulation in the Hep3B cells, indicating that G-TPP triggers Beclin 1-independent protective autophagy in Hep3B cells. Taken together, these data reveal that G-TPP induces cell death through a combination of death pathways, including necroptosis and apoptosis, and overcomes the apoptosis resistance conferred by Bcl-2 in Hep3B cells via necroptosis. These findings are important for the therapeutic exploitation of necroptosis as an alternative cell death program to bypass the resistance to apoptosis.
- Published
- 2013
15. An analogue of resveratrol HS-1793 exhibits anticancer activity against MCF-7 cells via inhibition of mitochondrial biogenesis gene expression
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Hongsuk Suh, Suhee Song, Young Geol Yoon, Young Hyun Yoo, In Sung Song, Sung Ryul Lee, Kyung Soo Ko, Jin Han, Seung Hun Jeong, Hyoung Kyu Kim, Nari Kim, and Byoung Doo Rhee
- Subjects
Programmed cell death ,Cell Survival ,Mitochondrial Turnover ,Down-Regulation ,Antineoplastic Agents ,Naphthols ,Resveratrol ,Oxidative Phosphorylation ,Mitochondrial Proteins ,chemistry.chemical_compound ,Stilbenes ,Humans ,Molecular Biology ,Caspase ,Membrane Potential, Mitochondrial ,biology ,food and beverages ,Resorcinols ,Articles ,Cell Biology ,General Medicine ,TFAM ,Cell biology ,Gene Expression Regulation, Neoplastic ,MCF-7 ,Mitochondrial biogenesis ,Biochemistry ,chemistry ,Caspases ,Cancer cell ,MCF-7 Cells ,biology.protein ,Drug Screening Assays, Antitumor - Abstract
Resveratrol is a phytoalexin and polyphenol derived from grapes, berries, and peanuts. It has been shown to mediate death of a wide variety of cancer cells. Although resveratrol is considered an important potential chemotherapeutic agent, it is required at high doses to achieve a biologically or physiologically significant effect, which may be impractical for treating cancer. Thus, a more stable and potent derivative of resveratrol, with more effective tumoricidal activity, must be developed. A novel resveratrol analog, HS-1793, has recently been synthesized and was determined to exhibit a greater decrease in cancer cell viability than resveratrol. However, the underlying mechanism of HS-1793-induced cancer cell death remains unknown. We thus investigated the mechanism by which HS-1793 induces cell death and assessed whether this occurs through a mitochondrial-mediated mechanism. Using the MCF-7 breast cancer cell line, we determined that HS-1793 treatment significantly increased cell death at a relatively low dose compared with resveratrol. HS-1793 treatment more significantly decreased mitochondrial membrane potential, cellular ATP concentration, and cellular oxygen consumption rate than resveratrol treatment. At the molecular level, HS-1793 treatment down-regulated the expression of major mitochondrial biogenesis-regulating proteins, including mitochondrial transcriptional factor A (TFAM), Tu translation elongation factor (TUFM), and single-stranded DNA-binding protein. We conclude that HS- 1793 acts by regulating the expression of TFAM and TUFM, leading to a block in normal mitochondrial function, which sensitizes cancer cells to cell death. We therefore propose that HS-1793 can be a useful chemosensitization agent, which together with other such agents can efficiently target cancer cells.
- Published
- 2012
16. Etoposide induces a mixed type of programmed cell death and overcomes the resistance conferred by Bcl-2 in Hep3B hepatoma cells
- Author
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Bong-Soo Park, Taeg Kyu Kwon, Yeon Suk Song, Seung Hee Yoo, Cheol Park, Joon Seok Oh, Jee Suk Lee, Young Geol Yoon, Young Hyun Yoo, and Yung Hyun Choi
- Subjects
Cancer Research ,Programmed cell death ,Carcinoma, Hepatocellular ,Cell ,Antineoplastic Agents ,Apoptosis ,medicine ,Humans ,Staurosporine ,Caspase ,Etoposide ,biology ,Liver Neoplasms ,Autophagy ,Membrane Proteins ,Cell cycle ,Caspase Inhibitors ,digestive system diseases ,Genes, bcl-2 ,Cell biology ,Gene Expression Regulation, Neoplastic ,medicine.anatomical_structure ,Oncology ,Drug Resistance, Neoplasm ,biology.protein ,Cancer research ,Beclin-1 ,Apoptosis Regulatory Proteins ,medicine.drug - Abstract
The Bcl-2 protein is known to exert not only anti-apoptotic but also anti-autophagic activities. Numerous studies have demonstrated that etoposide, which is one of the most widely used cancer chemotherapy agents, induces apoptotic cell death. However, the exact molecular mechanism leading to cell death by etoposide remains to be resolved. This study aimed to dissect the mode of cell death induced by etoposide in Hep3B hepatoma cells. Furthermore, this study was conducted to examine whether etoposide overcomes the resistance conferred by Bcl-2 in Hep3B hepatoma cells. We observed that Hep3B cells treated with etoposide show not only apoptotic but autophagic phenotypes. Autophagy inhibition by 3-methyladenine (3MA) and caspase inhibition by zVAD-fmk effectively decreased autophagic and apoptotic phenotypes, respectively. However, either zVAD-fmk or 3MA only partially prevented cell death. These data indicate that etoposide concomitantly induces autophagic cell death and apoptosis in Hep3B cells. Importantly, etoposide can effectively induce cell death in Bcl-2-overexpressing Hep3B cells. Conversely, staurosporine, which exclusively induces apoptosis in Hep3B cells, did not efficiently induce cell death in Bcl‑2‑overexpressing Hep3B cells. Staurosporine-treated Hep3B cells also showed an autophagic phenotype. While autophagy is cell death-inducing in Hep3B cells treated with etoposide, it is cytoprotective in Hep3B cells treated with staurosporine. To this end, we observed that etoposide-induced mixed type of programmed cell death is associated with the dissociation of Bcl-2 from Beclin-1. Taken together, etoposide induces a mixed type of programmed cell death and overcomes the resistance conferred by Bcl-2 in Hep3B hepatoma cells.
- Published
- 2012
17. Nonreplicating Intracellular Bacterial Vector for Conjugative DNA Transfer into Mitochondria
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Michael D. Koob and Young Geol Yoon
- Subjects
DNA Replication ,Cytoplasm ,Mitochondrial DNA ,Genetic Vectors ,Cell ,Pharmaceutical Science ,Mitochondrion ,Biology ,chemistry.chemical_compound ,Mammalian cell ,Escherichia coli ,Tumor Cells, Cultured ,medicine ,Humans ,Pharmacology (medical) ,Vector (molecular biology) ,Pharmacology ,Organic Chemistry ,Gene Transfer Techniques ,DNA ,Molecular biology ,Mitochondria ,Cell biology ,medicine.anatomical_structure ,chemistry ,Conjugation, Genetic ,Molecular Medicine ,Intracellular ,HeLa Cells ,Biotechnology - Abstract
We have previously shown that DNA constructs can be introduced into isolated mitochondria through the process of conjugative transfer from an E. coli host. We set out to generate a conjugative E. coli strain that would be able to introduce itself into the cytoplasm of a mammalian cell for the purpose of transferring DNA into the mitochondria in the cell.We have now developed a method for making E. coli strains from which nonreplicating populations of daughter cells can be generated. We used this approach to modify a facultative intracellular enteroinvasive E. coli (EIEC) and introduced conjugative functions to this new strain.We demonstrate that this new strain can generate large populations of nonreplicating cells that are capable of conjugative transfer to other cells and can readily invade mammalian tissue culture cells, live in the cytoplasm of the cell for several days, and that do not kill the invaded mammalian cell.We successfully constructed an E. coli host suitable for intracellular conjugative transfer but, due to the lack of suitable mitochondrial screening or selectable markers, we have not yet been able to determine if these bacterial vectors can in fact transfer DNA into intracelluar mitochondria.
- Published
- 2012
18. Mitochondrial genome-maintaining activity of mouse mitochondrial transcription factor A and its transcript isoform in Saccharomyces cerevisiae
- Author
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Michael D. Koob, Young Geol Yoon, and Young Hyun Yoo
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Recombination, Genetic ,Genetics ,Mitochondrial DNA ,Saccharomyces cerevisiae Proteins ,biology ,Saccharomyces cerevisiae ,Gene Transfer Techniques ,General Medicine ,TFAM ,Mitochondrion ,biology.organism_classification ,Genome ,Article ,Yeast ,DNA-Binding Proteins ,Mitochondrial Proteins ,Mice ,Mitochondrial biogenesis ,Genome, Mitochondrial ,Animals ,Protein Isoforms ,Conserved Sequence ,Transcription Factors ,Mitochondrial nucleoid - Abstract
Mitochondrial transcription factor A (Tfam) binds to and organizes mitochondrial DNA (mtDNA) genome into a mitochondrial nucleoid (mt-nucleoid) structure, which is necessary for mtDNA transcription and maintenance. Here, we demonstrate the mtDNA-organizing activity of mouse Tfam and its transcript isoform (Tfam(iso)), which has a smaller high-mobility group (HMG)-box1 domain, using a yeast model system that contains a deletion of the yeast homolog of mouse Tfam protein, Abf2p. When the mouse Tfam genes were introduced into the ABF2 locus of yeast genome, the corresponding mouse proteins, Tfam and Tfam(iso), can functionally replace the yeast Abf2p and support mtDNA maintenance and mitochondrial biogenesis in yeast. Growth properties, mtDNA content and mitochondrial protein levels of genes encoded in the mtDNA were comparable in the strains expressing mouse proteins and the wild-type yeast strain, indicating that the proteins have robust mtDNA-maintaining and -expressing function in yeast mitochondria. These results imply that the mtDNA-organizing activities of the mouse mt-nucleoid proteins are structurally and evolutionary conserved, thus they can maintain the mtDNA of distantly related and distinctively different species, such as yeast.
- Published
- 2011
19. Toward genetic transformation of mitochondria in mammalian cells using a recoded drug-resistant selection marker
- Author
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Michael D. Koob and Young Geol Yoon
- Subjects
Mitochondrial DNA ,Cell Survival ,Molecular Sequence Data ,Drug Resistance ,Mitochondrion ,Biology ,Transfection ,DNA, Mitochondrial ,Cell Line ,Mice ,chemistry.chemical_compound ,Gene Order ,Genetics ,Animals ,Molecular Biology ,Gene ,Cell Proliferation ,Base Sequence ,Kanamycin Kinase ,Electroporation ,Genetic code ,Mitochondria ,Transformation (genetics) ,chemistry ,Gentamicins ,DNA - Abstract
Due to technical difficulties, the genetic transformation of mitochondria in mammalian cells is still a challenge. In this report, we described our attempts to transform mammalian mitochondria with an engineered mitochondrial genome based on selection using a drug resistance gene. Because the standard drug-resistant neomycin phosphotransferase confers resistance to high concentrations of G418 when targeted to the mitochondria, we generated a recoded neomycin resistance gene that uses the mammalian mitochondrial genetic code to direct the synthesis of this protein in the mitochondria, but not in the nucleus (mitochondrial version). We also generated a universal version of the recoded neomycin resistance gene that allows synthesis of the drug-resistant proteins both in the mitochondria and nucleus. When we transfected these recoded neomycin resistance genes that were incorporated into the mouse mitochondrial genome clones into mouse tissue culture cells by electroporation, no DNA constructs were delivered into the mitochondria. We found that the universal version of the recoded neomycin resistance gene was expressed in the nucleus and thus conferred drug resistance to G418 selection, while the synthetic mitochondrial version of the gene produced no background drug-resistant cells from nuclear transformation. These recoded synthetic drug-resistant genes could be a useful tool for selecting mitochondrial genetic transformants as a precise technology for mitochondrial transformation is developed.
- Published
- 2011
20. PCR-based cloning of the complete mouse mitochondrial genome and stable engineering in Escherichia coli
- Author
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Michael D. Koob, Young Geol Yoon, and Yi Wei Yang
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Mitochondrial DNA ,DNA polymerase ,Bioengineering ,medicine.disease_cause ,DNA, Mitochondrial ,Polymerase Chain Reaction ,Applied Microbiology and Biotechnology ,Genome ,law.invention ,Mice ,law ,Escherichia coli ,medicine ,Animals ,Cloning, Molecular ,Polymerase chain reaction ,Cloning ,Genetics ,mtDNA control region ,biology ,General Medicine ,Molecular biology ,Clone Cells ,Restriction enzyme ,Genome, Mitochondrial ,biology.protein ,Genetic Engineering ,Biotechnology - Abstract
We have devised a method for cloning an entire mammalian mitochondrial genome (mtDNA) in Escherichia coli using PCR-based amplification and sequential ligation. Here we test this approach by cloning the complete mouse mtDNA. The mtDNA was divided into four to five fragments based on unique restriction enzyme sites and amplified by high-fidelity long-range DNA polymerase. The synthesized fragments were cloned individually to test their toxicity in the E. coli host and then combined sequentially into a vector containing the E. coli R6K origin of DNA replication. The synthetic complete mouse mtDNA clones were replicated stably and faithfully in E. coli when maintained at moderately low copy numbers per cell. The sequence integrity of the synthetic mouse mtDNA clones was confirmed by nucleotide sequencing; no mutations or rearrangements in the genome were found. This approach can facilitate the cloning of entire mammalian mitochondrial genomes in E. coli and assist in the introduction of desired modifications into the mitochondrial genome.
- Published
- 2009
21. Retinal pigment epithelial cells undergoing mitotic catastrophe arevulnerable to autophagy inhibition
- Author
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Oh Js, Lee Sy, Young Geol Yoon, Young Hyun Yoo, Won Yeol Ryu, Jeong Sy, Yeonho Choi, Rho Jh, Hee Bae Ahn, Kim Hy, Woo Jin Jeong, Kwon Yh, Rho Sh, Na Young Jeong, and Woo Chan Park
- Subjects
Cancer Research ,Programmed cell death ,Cell Survival ,Ubiquitin-Protein Ligases ,Immunology ,Mitosis ,PINK1 ,Retinal Pigment Epithelium ,Mitochondrion ,Biology ,Cell Line ,Cellular and Molecular Neuroscience ,Mitophagy ,Autophagy ,Humans ,Inner mitochondrial membrane ,Mitotic catastrophe ,Electron Transport Complex I ,Epithelial Cells ,Cell Biology ,Cytoprotection ,eye diseases ,Mitochondria ,Cell biology ,Protein Transport ,Original Article ,sense organs - Abstract
The increased mitochondrial DNA damage leads to altered functional capacities of retinal pigment epithelial (RPE) cells. A previous study showed the increased autophagy in RPE cells caused by low concentrations of rotenone, a selective inhibitor of mitochondrial complex I. However, the mechanism by which autophagy regulates RPE cell death is still unclear. In the present study, we examined the mechanism underlying the regulation of RPE cell death through the inhibition of mitochondrial complex I. We report herein that rotenone induced mitotic catastrophe (MC) in RPE cells. We further observed an increased level of autophagy in the RPE cells undergoing MC (RPE-MC cells). Importantly, autophagy inhibition induced nonapoptotic cell death in RPE-MC cells. These findings indicate that autophagy has a pivotal role in the survival of RPE-MC cells. We next observed PINK1 accumulation in the mitochondrial membrane and parkin translocation into the mitochondria from the cytosol in the rotenone-treated RPE-MC cells, which indicates that increased mitophagy accompanies MC in ARPE-19 cells. Noticeably, the mitophagy also contributed to the cytoprotection of RPE-MC cells. Although there might be a significant gap in the roles of autophagy and mitophagy in the RPE cells in vivo, our in vitro study suggests that autophagy and mitophagy presumably prevent the RPE-MC cells from plunging into cell death, resulting in the prevention of RPE cell loss.
- Published
- 2014
22. Cre/loxP-mediated in vivo excision of large segments from yeast genome and their amplification based on the 2μm plasmid-derived system1Published in conjunction with A Wisconsin Gathering Honoring Waclaw Szybalski on the occasion of his 75th year and 20 years of Editorship-in-Chief of Gene, 10–11 August 1997, University of Wisconsin, Madison, WI, USA.1
- Author
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Young Geol Yoon, Waclaw Szybalski, György Pósfai, and Sun Chang Kim
- Subjects
Plasmid ,Genetics ,Cre recombinase ,URA3 ,General Medicine ,Cre-Lox recombination ,Site-specific recombination ,Biology ,Homologous recombination ,Genome ,Molecular biology ,Floxing ,Cell biology - Abstract
In vivo excision and amplification of pre-determined, large genomic segments, directly from the genome of a natural host, provides an alternative to conventional cloning in foreign vectors. Using this approach, we have devised an in vivo procedure for excising large segments of Saccharomyces cerevisiae genome using Cre/ loxP system of bacteriophage P1, followed by amplification of excised circles, as based on the yeast 2 μm plasmid-derived ori and Flp/ FRT machinery. To provide the excision and replication enzymes, trans -acting genes cre and FLP , which were under a very tight control of GAL1 and GAL10 promoters, respectively, were inserted by homologous recombination into the URA3 gene on chromosome V. Two parallel loxP sequences, which serve as the recognition sites for the Cre recombinase, were also integrated into the genome at pre-determined sites that are 50–100 kb apart. Moreover, 2 μm ori , REP3 and two inverted FRT s, which serve as a conditional replication system, were also integrated between the loxP sites. The strain carrying all these inserted elements was perfectly stable. Only after the induction by galactose of the Cre excision function, the genomic segment flanked by two loxP sites was excised and circularized. Applying this procedure, the 50-kb LEU2–YCR011c and 100-kb LEU2–YCR035c regions of chromosome III were successfully excised from the S. cerevisiae genome, whereas the 2 μm ori , as aided by FRT /Flp, provided the amplification function. Such excised and amplified genomic segments can be used for the sequencing and functional analysis of any yeast genes.
- Published
- 1998
23. Lumbricin I, a novel proline-rich antimicrobial peptide from the earthworm: purification, cDNA cloning and molecular characterization
- Author
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Sun Chang Kim, Chan Bae Park, Young Geol Yoon, and Ju Hyun Cho
- Subjects
DNA, Complementary ,Sequence analysis ,Annelida ,Molecular Sequence Data ,Sequence alignment ,Peptide ,Microbial Sensitivity Tests ,Biology ,Gram-Positive Bacteria ,Polymerase Chain Reaction ,Anti-Infective Agents ,Leeches ,Complementary DNA ,Gram-Negative Bacteria ,Animals ,Amino Acid Sequence ,Northern blot ,Cloning, Molecular ,Oligochaeta ,Molecular Biology ,Peptide sequence ,chemistry.chemical_classification ,Base Sequence ,Sequence Homology, Amino Acid ,Molecular mass ,Fungi ,Proteins ,Lumbricus rubellus ,Molecular biology ,Recombinant Proteins ,Anti-Bacterial Agents ,Amino acid ,Molecular Weight ,Biochemistry ,chemistry ,Earthworm ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Proline-rich peptide ,Oocytes ,cDNA cloning ,Molecular Medicine ,Antimicrobial peptide ,Peptides ,Sequence Alignment - Abstract
A novel antimicrobial peptide was isolated and characterized from the earthworm, Lumbricus rubellus. The antimicrobial peptide was purified to homogeneity by a heparin-affinity column and C18 reverse-phase HPLC, and named lumbricin I. Lumbricin I was a proline-rich antimicrobial peptide of 62 amino acids (15% proline in molar ratio; molecular mass, 7231 Da), whose complete sequence was determined by a combination of peptide sequence and cDNA analysis. The peptide and cDNA sequence analysis revealed that lumbricin I was produced as a precursor form consisting of 76 amino acids, with 14 residues in a presegment and 62 residues in mature lumbricin I. Lumbricin I showed antimicrobial activity in vitro against a broad spectrum of microorganisms without hemolytic activity. In addition, a 29-amino acid peptide, named lumbricin I(6–34), which was derived from residues 6–34 of lumbricin I, showed marginally stronger antimicrobial activity than lumbricin I. Northern blot analysis on total RNA revealed that expression of lumbricin I gene was not induced by bacterial infection, but was constitutively expressed. Furthermore, the expression of lumbricin I gene was specific in adult L. rubellus: Lumbricin I mRNA was detected only in adult L. rubellus, but not in eggs and young L. rubellus.
- Published
- 1998
24. Expression of αB-crystallin overrides the anti-apoptotic activity of XIAP
- Author
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In-Sun Chu, Hwan Tae Park, Sang Yeob Lee, Hye Young Kim, Yung Hyun Choi, Jee Suk Lee, Hyungjong Koh, Chunlan Yan, Young Geol Yoon, Young Hyun Yoo, and Na Young Jeong
- Subjects
Cancer Research ,Programmed cell death ,Blotting, Western ,Apoptosis ,X-Linked Inhibitor of Apoptosis Protein ,Transfection ,Glioma ,Cell Line, Tumor ,medicine ,Humans ,Immunoprecipitation ,RNA, Small Interfering ,Caspase ,Microscopy, Confocal ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,alpha-Crystallin B Chain ,medicine.disease ,Flow Cytometry ,Immunohistochemistry ,eye diseases ,XIAP ,Oncology ,Cell culture ,Basic and Translational Investigations ,biology.protein ,Cancer research ,Ectopic expression ,Neurology (clinical) ,sense organs - Abstract
Although crystallins are major structural proteins in the lens, α-crystallins perform non-lens functions, and αB-crystallin has been shown to act as an anti-apoptotic mediator in various cells. The present study was undertaken to examine whether αB-crystallin expressed in human malignant glioma cells exerts anti-apoptotic acitivity. In addition, we sought to elucidate the mechanism underlying any observed anti-apoptotic function of αB-crystallin in these cells. Three glioma cell lines, U373MG, U118MG, and T98G, were used. We observed that only the U373MG cell line expresses αB-crystallin, whereas the other 2 glioma cell lines, U118MG and T98G, demonstrated no endogenous expression of αB-crystallin. We next observed that the silencing of αB-crystallin sensitized U373MG cells to suberoylanilide hydroxamic acid (SAHA)–induced apoptosis and that αB-crystallin associates with caspase-3 and XIAP. Because XIAP is the most potent suppressor of mammalian apoptosis through the direct binding with caspases, we assessed whether XIAP also plays an anti-apoptotic role in SAHA-induced apoptosis in αB-crystallin-expressing U373MG cells. Of note, the silencing of XIAP did not alter the amount of cell death induced by SAHA, indicating that XIAP does not exert an anti-apoptotic activity in U373MG cells. We then determined whether the ectopic expression of αB-crystallin in glioma cells caused a loss of the anti-apoptotic activity of XIAP. Accordingly, we established 2 αB-crystallin over-expressing glioma cell lines, U118MG and T98G, and found that the silencing of XIAP did not sensitize these cells to SAHA-induced apoptosis. These findings suggest that αB-crystallin expressed in glioma cells overrides the anti-apoptotic activity exerted by XIAP.
- Published
- 2012
25. Histone deacetylase inhibitors induce mitochondrial elongation
- Author
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Seon-Yong Jeong, Seung Hee Yoo, Jee Suk Lee, Young Geol Yoon, Young Hyun Yoo, Dai-il Jung, Sang Yeob Lee, Na Young Jeong, and Seung Hun Jeong
- Subjects
FIS1 ,Dynamins ,Physiology ,Clinical Biochemistry ,Antineoplastic Agents ,Apoptosis ,Mitochondrion ,Biology ,Hydroxamic Acids ,Membrane Fusion ,Mitochondrial Membrane Transport Proteins ,Cell Line ,GTP Phosphohydrolases ,Histones ,Mitochondrial Proteins ,Cell Line, Tumor ,medicine ,MFN1 ,Humans ,Vorinostat ,Membrane Proteins ,Acetylation ,Cell Biology ,Molecular biology ,Cell biology ,Mitochondria ,Histone Deacetylase Inhibitors ,mitochondrial fusion ,DNAJA3 ,Mitochondrial fission ,Histone deacetylase ,Microtubule-Associated Proteins ,Cell Division ,medicine.drug - Abstract
Although various stimuli-inducing cell demise are known to alter mitochondrial morphology, it is currently debated whether alteration of mitochondrial morphology is per se responsible for apoptosis execution or prevention. This study was undertaken to examine the effect of histone deacetylase (HDAC) inhibitors on mitochondrial fusion-fission equilibrium. The mechanism underlying HDAC inhibitor-induced alteration of mitochondrial morphology was examined in various cells including primary cultured cells and untransformed and cancer cell lines treated with seven different HDAC inhibitors. Suberoylanilide hydroxamic acid (SAHA)-induced mitochondrial elongation in both Hep3B and Bcl-2-overexpressing Hep3B cells, apart from its apoptosis induction function. SAHA significantly decreased the expression of mitochondrial fission protein Fis1 and reduced the translocation of Drp1 to the mitochondria. Fis1 overexpression attenuated SAHA-induced mitochondrial elongation. In addition, depletion of mitochondrial fusion proteins, Mfn1 or Opa1, by RNA interference also attenuated SAHA-induced mitochondrial elongation. All of the HDAC inhibitors we examined induced mitochondrial elongation in all the cell types tested at both subtoxic and toxic concentrations. These results indicate that HDAC inhibitors induce mitochondrial elongation, irrespective of the induction of apoptosis, which may be linked to alterations of mitochondrial dynamics regulated by mitochondrial morphology-regulating proteins. Since mitochondria have recently emerged as attractive targets for cancer therapy, our findings that HDAC inhibitors altered mitochondrial morphology may support the rationale for these agents as novel therapeutic approaches against cancer. Further, the present study may provide insight into a valuable experimental strategy for simple manipulation of mitochondrial morphology.
- Published
- 2011
26. Downregulation of Protein Kinase CK2 Activity Facilitates Tumor Necrosis Factor-α-Mediated Chondrocyte Death through Apoptosis and Autophagy
- Author
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Won Tae Chung, Hyantae Choi, Sung Won Lee, Sang Yeob Lee, Bong-Soo Park, Yeon Suk Song, Sang Hwa Lee, Il Hee Yun, Kunhong Kim, Young Geol Yoon, and Young Hyun Yoo
- Subjects
Male ,lcsh:Medicine ,Apoptosis ,Rats, Sprague-Dawley ,Molecular cell biology ,RNA interference ,Signaling in Cellular Processes ,lcsh:Science ,Casein Kinase II ,Connective Tissue Cells ,Apoptotic Signaling ,Cellular Stress Responses ,Aged, 80 and over ,Multidisciplinary ,medicine.diagnostic_test ,Cell Death ,Antiapoptotic Signaling ,Animal Models ,Middle Aged ,Cell biology ,medicine.anatomical_structure ,embryonic structures ,Tumor necrosis factor alpha ,Cellular Types ,Research Article ,Signal Transduction ,Adult ,Programmed cell death ,animal structures ,Down-Regulation ,Biology ,Chondrocyte ,Gene Expression Regulation, Enzymologic ,Model Organisms ,Chondrocytes ,Downregulation and upregulation ,Western blot ,Osteoarthritis ,medicine ,Autophagy ,Animals ,Humans ,Viability assay ,Aged ,Tumor Necrosis Factor-alpha ,lcsh:R ,fungi ,Rats ,Rat ,lcsh:Q ,Gene expression - Abstract
Despite the numerous studies of protein kinase CK2, little progress has been made in understanding its function in chondrocyte death. Our previous study first demonstrated that CK2 is involved in apoptosis of rat articular chondrocytes. Recent studies have suggested that CK2 downregulation is associated with aging. Thus examining the involvement of CK2 downregulation in chondrocyte death is an urgently required task. We undertook this study to examine whether CK2 downregulation modulates chondrocyte death. We first measured CK2 activity in articular chondrocytes of 6-, 21- and 30-month-old rats. Noticeably, CK2 activity was downregulated in chondrocytes with advancing age. To build an in vitro experimental system for simulating tumor necrosis factor (TNF)-α-induced cell death in aged chondrocytes with decreased CK2 activity, chondrocytes were co-treated with CK2 inhibitors and TNF-α. Viability assay demonstrated that CK2 inhibitors facilitated TNF-α-mediated chondrocyte death. Pulsed-field gel electrophoresis, nuclear staining, flow cytometry, TUNEL staining, confocal microscopy, western blot and transmission electron microscopy were conducted to assess cell death modes. The results of multiple assays showed that this cell death was mediated by apoptosis. Importantly, autophagy was also involved in this process, as supported by the appearance of a punctuate LC3 pattern and autophagic vacuoles. The inhibition of autophagy by silencing of autophage-related genes 5 and 7 as well as by 3-methyladenine treatment protected chondrocytes against cell death and caspase activation, indicating that autophagy led to the induction of apoptosis. Autophagic cells were observed in cartilage obtained from osteoarthritis (OA) model rats and human OA patients. Our findings indicate that CK2 down regulation facilitates TNF-α-mediated chondrocyte death through apoptosis and autophagy. It should be clarified in the future if autophagy observed is a consequence versus a cause of the degeneration in vivo.
- Published
- 2011
27. The novel resveratrol analog HS-1793-induced polyploid LNCaP prostate cancer cells are vulnerable to downregulation of Bcl-xL
- Author
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Jee Hyun Rho, Ki Soo Yoo, Suhee Song, Yung Hyun Choi, Hongsuk Suh, Sang Yeob Lee, Na Young Jeong, Young Geol Yoon, Young Hyun Yoo, and Jee Suk Lee
- Subjects
Male ,Cancer Research ,medicine.medical_specialty ,Cell Survival ,bcl-X Protein ,Down-Regulation ,Antineoplastic Agents ,Apoptosis ,Naphthols ,Protein Serine-Threonine Kinases ,Resveratrol ,Biology ,Polyploidy ,chemistry.chemical_compound ,Aurora Kinases ,Cell Line, Tumor ,Internal medicine ,LNCaP ,medicine ,Aurora Kinase B ,Humans ,Cytotoxic T cell ,Oncogene ,Prostatic Neoplasms ,Cancer ,Drug Synergism ,Resorcinols ,U937 Cells ,Cell cycle ,HCT116 Cells ,medicine.disease ,Endocrinology ,Oncology ,chemistry ,Cell culture ,Cancer cell ,Cancer research ,K562 Cells - Abstract
Since resveratrol is not a potent cytotoxic compound when compared with other chemotherapeutic agents, several previous studies have been performed to obtain synthetic analogs of resveratrol with potent activity. Our previous study demonstrated that the resveratrol analog HS-1793 showed stronger antitumor activity than resveratrol in various cancer cells. We examined the antitumor activity exerted by HS-1793 in prostate cancer cells, and we observed that HS-1793 acts as a polyploidy inducer. Noticeably, multinucleation and polyploidization were induced in most LNCaP cells treated with HS-1793 at the dose causing a slight decline in cell viability. However, the induction of multinucleation and polyploidization was much lower in PC-3 prostate cancer cells treated with the same dose of HS-1793. Western blot and RT-PCR analyses showed that the expression of Aurora B was almost undetectable in LNCaP cells, but it was highly expressed in PC-3 cells. Further, silencing of Aurora B sensitized PC-3 cells to HS-1793-induced multi-nucleation. These results indicate that expression of Aurora B determines multinucleation in prostate cancer cells treated with HS-1793. Additional assays using multiple cancer cell lines show that the population of multinucleated cells induced by HS-1793 treatment is inversely proportional to Aurora B expression. We further elicited that the HS-1793-induced polyploid LNCaP cells are vulnerable to downregulation of Bcl-xL. Since the polyploidization in LNCaP induced by HS-1793 does not appear to cause definite commitment to apoptosis, the termination of polyploid cells by inhibition of Bcl-xL could provide an advantageous means to improve chemotherapeutic efficacy of HS-1793.
- Published
- 2011
28. Re-engineering the mitochondrial genomes in mammalian cells
- Author
-
Michael D. Koob, Young Geol Yoon, and Young Hyun Yoo
- Subjects
Mitochondrial DNA ,Histology ,Nuclear gene ,Review Article ,Mitochondrion ,Biology ,Genome ,Human mitochondrial genetics ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,mitochondrial targeting ,Gene ,030304 developmental biology ,Genetics ,0303 health sciences ,mitochondrial genome engineering ,Bacterial conjugation ,Cell Biology ,mtDNA delivery ,Heteroplasmy ,bacterial conjugation ,Anatomy ,lipophilic cations ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Mitochondria are subcellular organelles composed of two discrete membranes in the cytoplasm of eukaryotic cells. They have long been recognized as the generators of energy for the cell and also have been known to associate with several metabolic pathways that are crucial for cellular function. Mitochondria have their own genome, mitochondrial DNA (mtDNA), that is completely separated and independent from the much larger nuclear genome, and even have their own system for making proteins from the genes in this mtDNA genome. The human mtDNA is a small (~16.5 kb) circular DNA and defects in this genome can cause a wide range of inherited human diseases. Despite of the significant advances in discovering the mtDNA defects, however, there are currently no effective therapies for these clinically devastating diseases due to the lack of technology for introducing specific modifications into the mitochondrial genomes and for generating accurate mtDNA disease models. The ability to engineer the mitochondrial genomes would provide a powerful tool to create mutants with which many crucial experiments can be performed in the basic mammalian mitochondrial genetic studies as well as in the treatment of human mtDNA diseases. In this review we summarize the current approaches associated with the correction of mtDNA mutations in cells and describe our own efforts for introducing engineered mtDNA constructs into the mitochondria of living cells through bacterial conjugation.
- Published
- 2010
29. Investigation of cellular targeting of carotenoid pathway enzymes in Pichia pastoris
- Author
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Pyung Cheon Lee, Claudia Schmidt-Dannert, and Young Geol Yoon
- Subjects
Bioengineering ,Applied Microbiology and Biotechnology ,Pichia ,Pichia pastoris ,law.invention ,Metabolic engineering ,chemistry.chemical_compound ,Lycopene ,Biosynthesis ,law ,Peroxisomes ,chemistry.chemical_classification ,biology ,Ascomycota ,General Medicine ,Peroxisome ,biology.organism_classification ,Carotenoids ,Enzyme ,chemistry ,Biochemistry ,Microscopy, Fluorescence ,Recombinant DNA ,Signal transduction ,Biotechnology ,Signal Transduction - Abstract
Cellular targeting of lycopene biosynthetic enzymes was investigated in Pichia pastoris X-33. Three lycopene pathway enzymes, CrtE, CrtB, and CrtI, were fused to fluorescent EGFPs with or without a peroxisomal targeting sequence (PTS1) and then expressed in P. pastoris. When P. pastoris was grown in YPD, the PTS1 fusion enzymes were found to be localized in peroxisomes, whereas the enzymes not fused with PTS1 were equally distributed throughout the entire cell. A similar targeting pattern was also observed in P. pastoris strains that were grown in peroxisome-proliferating medium, YPOT. Analysis of the fluorescent images of isolated peroxisomes showed that the PTS1 fused enzymes were dominantly present in peroxisomes whereas small amount of the enzymes not fused with PTS1 were non-specifically sent to peroxisomes. These results indicate that PTS1 specifically target lycopene pathway enzymes into peroxisomes and this targeting pathway was strong enough to overcome their inherent targeting program. In conclusion, we first showed that carotenogenic enzymes can be targeted into the specific cellular location of recombinant hosts and this targeting strategy can serve as the basis for the subsequent development of sophisticated pathway engineering in microorganisms.
- Published
- 2008
30. Selection by drug resistance proteins located in the mitochondria of mammalian cells
- Author
-
Young Geol Yoon and Michael D. Koob
- Subjects
Mitochondrial DNA ,Recombinant Fusion Proteins ,Drug Resistance ,Drug resistance ,Biology ,Mitochondrion ,Article ,Green fluorescent protein ,chemistry.chemical_compound ,Western blot ,medicine ,Humans ,Molecular Biology ,Selectable marker ,Cell Proliferation ,medicine.diagnostic_test ,Kanamycin Kinase ,Cell Biology ,Mitochondria ,carbohydrates (lipids) ,Transformation (genetics) ,Phosphotransferases (Alcohol Group Acceptor) ,Biochemistry ,chemistry ,Cinnamates ,Molecular Medicine ,Gentamicins ,Hygromycin B ,HeLa Cells - Abstract
Transformation of mitochondria in mammalian cells is now a technical challenge. In this report, we demonstrate that the standard drug resistant genes encoding neomycin and hygromycin phosphotransferases can potentially be used as selectable markers for mammalian mitochondrial transformation. We re-engineered the drug resistance genes to express proteins targeted to the mitochondrial matrix and confirmed the location of the proteins in the cells by fusing them with GFP and by Western blot and mitochondrial content mixing analyses. We found that the mitochondrially targeted-drug resistance proteins confer resistance to high levels of G418 and hygromycin without affecting the viability of cells.
- Published
- 2007
31. Interspecies mitochondrial fusion between mouse and human mitochondria is rapid and efficient
- Author
-
Michael D. Koob, Young Geol Yoon, and Christopher L. Haug
- Subjects
Mitochondrial DNA ,Mitochondrion ,Biology ,Human mitochondrial genetics ,Genome ,DNA, Mitochondrial ,Membrane Fusion ,Polymerase Chain Reaction ,Article ,Mice ,Genes, Reporter ,Animals ,Humans ,Molecular Biology ,High Mobility Group Proteins ,Cell Biology ,Fibroblasts ,Embryo, Mammalian ,Molecular biology ,Cell biology ,Mitochondria ,DNA-Binding Proteins ,Kinetics ,mitochondrial fusion ,Mitochondrial matrix ,Mitochondrial Membranes ,Molecular Medicine ,Mitochondrial fission ,ATP–ADP translocase - Abstract
A detailed molecular understanding of mitochondrial fusion and fission in mammalian cells is rapidly emerging. In this report, we demonstrate for the first time cross-species mitochondrial fusion between distantly related species using green and red fluorescent proteins targeted to the mitochondrial matrix. We found that mouse mitochondria were able to efficiently fuse to unmodified mitochondria of human cells and that the contents of the mitochondrial matrix were completely mixed in less than 4h. We also observed that mitochondria from the mtDNA-less (rho(0)) mouse cells can homogeneously fuse to the mitochondria of human cells. We were, however, unable to maintain human mitochondrial DNA in the mouse cells. These results indicate that mitochondrial fusion proteins in mouse and human cells have enough functional homology to mediate efficient cross-species mitochondrial fusion, but mouse nuclear and human mitochondrial genomes have not retained functional compatibility with one another.
- Published
- 2006
32. Efficient cloning and engineering of entire mitochondrial genomes in Escherichia coli and transfer into transcriptionally active mitochondria
- Author
-
Michael D. Koob and Young Geol Yoon
- Subjects
DNA, Bacterial ,Mitochondrial DNA ,Transcription, Genetic ,RNA, Mitochondrial ,Mitochondria, Liver ,Biology ,Mitochondrion ,Transfection ,Genome ,DNA, Mitochondrial ,law.invention ,chemistry.chemical_compound ,Mice ,Plasmid ,law ,Genetics ,Escherichia coli ,Tumor Cells, Cultured ,Animals ,Cloning, Molecular ,Promoter Regions, Genetic ,Selectable marker ,Cloning ,Base Sequence ,Articles ,chemistry ,Recombinant DNA ,RNA ,Genetic Engineering ,DNA - Abstract
We have devised an efficient method for replicating and stably maintaining entire mitochondrial genomes in Escherichia coli and have shown that we can engineer these mitochondrial DNA (mtDNA) genome clones using standard molecular biological techniques. In general, we accomplish this by inserting an E.coli replication origin and selectable marker into isolated, circular mtDNA at random locations using an in vitro transposition reaction and then transforming the modified genomes into E.coli. We tested this approach by cloning the 16.3 kb mouse mitochondrial genome and found that the resulting clones could be engineered and faithfully maintained when we used E.coli hosts that replicated them at moderately low copy numbers. When these recombinant mtDNAs were replicated at high copy numbers, however, mtDNA sequences were partially or fully deleted from the original clone. We successfully electroporated recombinant mouse mitochondrial genomes into isolated mouse mitochondria devoid of their own DNA and detected robust in organello RNA synthesis by RT-PCR. This approach for modifying mtDNA and subsequent in organello analysis of the recombinant genomes offers an attractive experimental system for studying many aspects of vertebrate mitochondrial gene expression and is a first step towards true in vivo engineering of mammalian mitochondrial genomes.
- Published
- 2003
33. Transformation of isolated mammalian mitochondria by bacterial conjugation
- Author
-
Michael D. Koob and Young Geol Yoon
- Subjects
Mitochondrial DNA ,RNA, Mitochondrial ,Molecular Sequence Data ,Buffers ,Biology ,medicine.disease_cause ,Cell Line ,Mice ,Viral Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Transformation, Genetic ,Plasmid ,Transcription (biology) ,Escherichia coli ,Genetics ,medicine ,Animals ,030304 developmental biology ,0303 health sciences ,Base Sequence ,Bacterial conjugation ,030302 biochemistry & molecular biology ,DNA ,DNA-Directed RNA Polymerases ,Molecular biology ,Mitochondria ,Cell biology ,chemistry ,Conjugation, Genetic ,Methods Online ,RNA ,Exogenous DNA ,Genetic Engineering ,In vitro recombination ,Plasmids - Abstract
We have developed a method for transferring exogenous DNA molecules into isolated mammalian mitochondria using bacterial conjugation. In general, we accomplish this by (i) inserting an origin of DNA transfer (oriT) sequence into a DNA construct, (ii) transforming the construct into an appropriate Escherichia coli strain and then (iii) introducing the mobilizable DNA into mitochondria through conjugation. We tested this approach by transferring plasmid DNA containing a T7 promoter sequence into mitochondria that we had engineered to contain T7 RNA polymerase. After conjugation between E.coli and mitochondria, we detected robust levels of T7 transcription from the DNA constructs that had been transferred into the mitochondria. This approach for engineering DNA constructs in vitro and subsequent transfer into mitochondria by conjugation offers an attractive experimental system for studying many aspects of vertebrate mitochondrial gene expression and is a potential route for transforming mitochondrial networks within mammalian cells.
- Published
- 2005
34. In Vivo Excision and Amplification of Large Human Genomic Segments Using Cre/loxP-and EBNA-1/oriP-mediated Machinery
- Author
-
Young Geol Yoon, Choi, J. Y., Kim, J. M., Lee, J. H., and Kim, S. C.
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