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1. Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean

Author

Koptekin, Dilek, Yüncü, Eren, Rodríguez-Varela, Ricardo, Altınışık, N. Ezgi, Psonis, Nikolaos, Kashuba, Natalia, Yorulmaz, Sevgi, George, Robert, Kazancı, Duygu Deniz, Kaptan, Damla, Gürün, Kanat, Vural, Kıvılcım Başak, Gemici, Hasan Can, Vassou, Despoina, Daskalaki, Evangelia, Karamurat, Cansu, Lagerholm, Vendela K., Erdal, Ömür Dilek, Kırdök, Emrah, Marangoni, Aurelio, Schachner, Andreas, Üstündağ, Handan, Shengelia, Ramaz, Bitadze, Liana, Elashvili, Mikheil, Stravopodi, Eleni, Özbaşaran, Mihriban, Duru, Güneş, Nafplioti, Argyro, Rose, C. Brian, Gencer, Tuğba, Darbyshire, Gareth, Gavashelishvili, Alexander, Pitskhelauri, Konstantine, Çevik, Özlem, Vuruşkan, Osman, Kyparissi-Apostolika, Nina, Büyükkarakaya, Ali Metin, Oğuzhanoğlu, Umay, Günel, Sevinç, Tabakaki, Eugenia, Aliev, Akper, Ibrahimov, Anar, Shadlinski, Vaqif, Sampson, Adamantios, Kılınç, Gülşah Merve, Atakuman, Çiğdem, Stamatakis, Alexandros, Poulakakis, Nikos, Erdal, Yılmaz Selim, Pavlidis, Pavlos, Storå, Jan, Özer, Füsun, Götherström, Anders, and Somel, Mehmet

Published
2023
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2. The Population History of Domestic Sheep Revealed by Paleogenomes.

Author

Kaptan, Damla, Atağ, Gözde, Vural, Kıvılcım Başak, Miranda, Pedro Morell, Akbaba, Ali, Yüncü, Eren, Buluktaev, Aleksey, Abazari, Mohammad Foad, Yorulmaz, Sevgi, Kazancı, Duygu Deniz, Doğu, Ayça Küçükakdağ, Çakan, Yasin Gökhan, Özbal, Rana, Gerritsen, Fokke, Cupere, Bea De, Duru, Refik, Umurtak, Gülsün, Arbuckle, Benjamin S, Baird, Douglas, and Çevik, Özlem

Subjects
SHEEP, WHOLE genome sequencing, MOUFLON, DOMESTIC animals, SHEEP breeding, SHEEP breeds
Abstract

Sheep was one of the first domesticated animals in Neolithic West Eurasia. The zooarchaeological record suggests that domestication first took place in Southwest Asia, although much remains unresolved about the precise location(s) and timing(s) of earliest domestication, or the post-domestication history of sheep. Here, we present 24 new partial sheep paleogenomes, including a 13,000-year-old Epipaleolithic Central Anatolian wild sheep, as well as 14 domestic sheep from Neolithic Anatolia, two from Neolithic Iran, two from Neolithic Iberia, three from Neolithic France, and one each from Late Neolithic/Bronze Age Baltic and South Russia, in addition to five present-day Central Anatolian Mouflons and two present-day Cyprian Mouflons. We find that Neolithic European, as well as domestic sheep breeds, are genetically closer to the Anatolian Epipaleolithic sheep and the present-day Anatolian and Cyprian Mouflon than to the Iranian Mouflon. This supports a Central Anatolian source for domestication, presenting strong evidence for a domestication event in SW Asia outside the Fertile Crescent, although we cannot rule out multiple domestication events also within the Neolithic Fertile Crescent. We further find evidence for multiple admixture and replacement events, including one that parallels the Pontic Steppe-related ancestry expansion in Europe, as well as a post-Bronze Age event that appears to have further spread Asia-related alleles across global sheep breeds. Our findings mark the dynamism of past domestic sheep populations in their potential for dispersal and admixture, sometimes being paralleled by their shepherds and in other cases not. [ABSTRACT FROM AUTHOR]

Published
2024
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3. Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication

Author

Yurtman, Erinç, Özer, Onur, Yüncü, Eren, Dağtaş, Nihan Dilşad, Koptekin, Dilek, Çakan, Yasin Gökhan, Özkan, Mustafa, Akbaba, Ali, Kaptan, Damla, Atağ, Gözde, Vural, Kıvılcım Başak, Gündem, Can Yümni, Martin, Louise, Kılınç, Gülşah Merve, Ghalichi, Ayshin, Açan, Sinan Can, Yaka, Reyhan, Sağlıcan, Ekin, Lagerholm, Vendela Kempe, Krzewińska, Maja, Günther, Torsten, Morell Miranda, Pedro, Pişkin, Evangelia, Şevketoğlu, Müge, Bilgin, C. Can, Atakuman, Çiğdem, Erdal, Yılmaz Selim, Sürer, Elif, Altınışık, N. Ezgi, Lenstra, Johannes A., Yorulmaz, Sevgi, Abazari, Mohammad Foad, Hoseinzadeh, Javad, Baird, Douglas, Bıçakçı, Erhan, Çevik, Özlem, Gerritsen, Fokke, Özbal, Rana, Götherström, Anders, Somel, Mehmet, Togan, İnci, and Özer, Füsun

Published
2021
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4. Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes

Author

Yaka, Reyhan, Mapelli, Igor, Kaptan, Damla, Doğu, Ayça, Chyleński, Maciej, Erdal, Ömür Dilek, Koptekin, Dilek, Vural, Kıvılcım Başak, Bayliss, Alex, Mazzucato, Camilla, Fer, Evrim, Çokoğlu, Sevim Seda, Lagerholm, Vendela Kempe, Krzewińska, Maja, Karamurat, Cansu, Gemici, Hasan Can, Sevkar, Arda, Dağtaş, Nihan Dilşad, Kılınç, Gülşah Merve, Adams, Donovan, Munters, Arielle R., Sağlıcan, Ekin, Milella, Marco, Schotsmans, Eline M.J., Yurtman, Erinç, Çetin, Mehmet, Yorulmaz, Sevgi, Altınışık, N. Ezgi, Ghalichi, Ayshin, Juras, Anna, Bilgin, C. Can, Günther, Torsten, Storå, Jan, Jakobsson, Mattias, de Kleijn, Maurice, Mustafaoğlu, Gökhan, Fairbairn, Andrew, Pearson, Jessica, Togan, İnci, Kayacan, Nurcan, Marciniak, Arkadiusz, Larsen, Clark Spencer, Hodder, Ian, Atakuman, Çiğdem, Pilloud, Marin, Sürer, Elif, Gerritsen, Fokke, Özbal, Rana, Baird, Douglas, Erdal, Yılmaz Selim, Duru, Güneş, Özbaşaran, Mihriban, Haddow, Scott D., Knüsel, Christopher J., Götherström, Anders, Özer, Füsun, and Somel, Mehmet

Published
2021
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5. Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication

Author

One Health Toxicologie, Yurtman, Erinç, Özer, Onur, Yüncü, Eren, Dağtaş, Nihan Dilşad, Koptekin, Dilek, Çakan, Yasin Gökhan, Özkan, Mustafa, Akbaba, Ali, Kaptan, Damla, Atağ, Gözde, Vural, Kıvılcım Başak, Gündem, Can Yümni, Martin, Louise, Kılınç, Gülşah Merve, Ghalichi, Ayshin, Açan, Sinan Can, Yaka, Reyhan, Sağlıcan, Ekin, Lagerholm, Vendela Kempe, Krzewińska, Maja, Günther, Torsten, Morell Miranda, Pedro, Pişkin, Evangelia, Şevketoğlu, Müge, Bilgin, C Can, Atakuman, Çiğdem, Erdal, Yılmaz Selim, Sürer, Elif, Altınışık, N Ezgi, Lenstra, Johannes A, Yorulmaz, Sevgi, Abazari, Mohammad Foad, Hoseinzadeh, Javad, Baird, Douglas, Bıçakçı, Erhan, Çevik, Özlem, Gerritsen, Fokke, Özbal, Rana, Götherström, Anders, Somel, Mehmet, Togan, İnci, Özer, Füsun, One Health Toxicologie, Yurtman, Erinç, Özer, Onur, Yüncü, Eren, Dağtaş, Nihan Dilşad, Koptekin, Dilek, Çakan, Yasin Gökhan, Özkan, Mustafa, Akbaba, Ali, Kaptan, Damla, Atağ, Gözde, Vural, Kıvılcım Başak, Gündem, Can Yümni, Martin, Louise, Kılınç, Gülşah Merve, Ghalichi, Ayshin, Açan, Sinan Can, Yaka, Reyhan, Sağlıcan, Ekin, Lagerholm, Vendela Kempe, Krzewińska, Maja, Günther, Torsten, Morell Miranda, Pedro, Pişkin, Evangelia, Şevketoğlu, Müge, Bilgin, C Can, Atakuman, Çiğdem, Erdal, Yılmaz Selim, Sürer, Elif, Altınışık, N Ezgi, Lenstra, Johannes A, Yorulmaz, Sevgi, Abazari, Mohammad Foad, Hoseinzadeh, Javad, Baird, Douglas, Bıçakçı, Erhan, Çevik, Özlem, Gerritsen, Fokke, Özbal, Rana, Götherström, Anders, Somel, Mehmet, Togan, İnci, and Özer, Füsun

Published
2021

6. Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication

Author

Özbal, Rana (ORCID 0000-0001-6765-2765 & YÖK ID 55583), Yurtman, Erinç; Özer, Onur; Yüncü, Eren; Dağtaş, Nihan Dilşad; Koptekin, Dilek; Çakan, Yasin Gökhan; Özkan, Mustafa; Akbaba, Ali; Kaptan, Damla; Atağ, Gözde; Vural, Kıvılcım Başak; Gündem, Can Yümni; Martin, Louise; Kılınç, Gülşah Merve; Ghalichi, Ayshin; Açan, Sinan Can; Yaka, Reyhan; Sağlıcan, Ekin; Lagerholm, Vendela Kempe; Krzewinska, Maja; Gunther, Torsten; Miranda, Pedro Morell; Pişkin, Evangelia; Sevketoğlu, Müge; Bilgin, C. Can; Atakuman, Ciğdem; Erdal, Yılmaz Selim; Sürer, Elif; Altınışık, N. Ezgi; Lenstra, Johannes A.; Yorulmaz, Sevgi; Abazari, Mohammad Foad; Hoseinzadeh, Javad; Baird, Douglas; Bıcakcı, Erhan; Çevik, Özlem; Gerritsen, Fokke; Gotherstrom, Anders; Somel, Mehmet; Togan, İnci; Özer, Füsun, College of Social Sciences and Humanities, Department of Archeology and History of Art, Özbal, Rana (ORCID 0000-0001-6765-2765 & YÖK ID 55583), Yurtman, Erinç; Özer, Onur; Yüncü, Eren; Dağtaş, Nihan Dilşad; Koptekin, Dilek; Çakan, Yasin Gökhan; Özkan, Mustafa; Akbaba, Ali; Kaptan, Damla; Atağ, Gözde; Vural, Kıvılcım Başak; Gündem, Can Yümni; Martin, Louise; Kılınç, Gülşah Merve; Ghalichi, Ayshin; Açan, Sinan Can; Yaka, Reyhan; Sağlıcan, Ekin; Lagerholm, Vendela Kempe; Krzewinska, Maja; Gunther, Torsten; Miranda, Pedro Morell; Pişkin, Evangelia; Sevketoğlu, Müge; Bilgin, C. Can; Atakuman, Ciğdem; Erdal, Yılmaz Selim; Sürer, Elif; Altınışık, N. Ezgi; Lenstra, Johannes A.; Yorulmaz, Sevgi; Abazari, Mohammad Foad; Hoseinzadeh, Javad; Baird, Douglas; Bıcakcı, Erhan; Çevik, Özlem; Gerritsen, Fokke; Gotherstrom, Anders; Somel, Mehmet; Togan, İnci; Özer, Füsun, College of Social Sciences and Humanities, and Department of Archeology and History of Art

Abstract

Sheep were among the first domesticated animals, but their demographic history is little understood. Here we analyzed nuclear polymorphism and mitochondrial data (mtDNA) from ancient central and west Anatolian sheep dating from Epipaleolithic to late Neolithic, comparatively with modern-day breeds and central Asian Neolithic/Bronze Age sheep (OBI). Analyzing ancient nuclear data, we found that Anatolian Neolithic sheep (ANS) are genetically closest to present-day European breeds relative to Asian breeds, a conclusion supported by mtDNA haplogroup frequencies. In contrast, OBI showed higher genetic affinity to present-day Asian breeds. These results suggest that the east-west genetic structure observed in present-day breeds had already emerged by 6000 BCE, hinting at multiple sheep domestication episodes or early wild introgression in southwest Asia. Furthermore, we found that ANS are genetically distinct from all modern breeds. Our results suggest that European and Anatolian domestic sheep gene pools have been strongly remolded since the Neolithic., Scientific and Technological Research Council of Turkey (TÜBİTAK) 1001; European Union (EU); Horizon 2020; European Research Council (ERC) Consolidator Grant; NEOGENE

Published
2021

7. Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication

Author

Yurtman, Erinç, primary, Özer, Onur, additional, Yüncü, Eren, additional, Dağtaş, Nihan Dilşad, additional, Koptekin, Dilek, additional, Çakan, Yasin Gökhan, additional, Özkan, Mustafa, additional, Akbaba, Ali, additional, Kaptan, Damla, additional, Atağ, Gözde, additional, Vural, Kıvılcım Başak, additional, Gündem, Can Yümni, additional, Martin, Louise, additional, Kılınç, Gülşah Merve, additional, Ghalichi, Ayshin, additional, Açan, Sinan Can, additional, Yaka, Reyhan, additional, Sağlıcan, Ekin, additional, Lagerholm, Vendela Kempe, additional, Krzewinska, Maja, additional, Pişkin, Evangelia, additional, Şevketoğlu, Müge, additional, Bilgin, C. Can, additional, Atakuman, Çiğdem, additional, Erdal, Yılmaz Selim, additional, Sürer, Elif, additional, Lenstra, Johannes, additional, Yorulmaz, Sevgi, additional, Abazari, Foad, additional, Hoseinzadeh, Javad, additional, Baird, Douglas, additional, Bıçakçı, Erhan, additional, Çevik, Özlem, additional, Gerritsen, Fokke, additional, Özbal, Rana, additional, Götherström, Anders, additional, Somel, Mehmet, additional, Togan, İnci, additional, and Özer, Füsun, additional

Published
2020
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9. Çine-Tepecik insan iskelet kalıntılarının arkeogenomik analizi

Author

Yorulmaz, Sevgi, Büyükkarakaya, Ali Metin, Özer, Füsun, and Antropoloji Anabilim Dalı

Subjects
Antropoloji, Anthropology
Abstract

Antik DNA çalışmalarında son dönemde artış görülmektedir. Bu yeni çalışmalarla incelenen arkeolojik insan topluluklarının genetik yapıları, demografik bilgileri ve çağdaşları olan diğer arkeolojik topluluklar ile olan ilişkileri ortaya çıkarılmaktadır. Bunun yanı sıra arkeolojik ve antropolojik değerlendirmelerle belirlenmiş olan eski insan topluluklarının iç dinamikleri hakkında edinilen bilgilere de yeni çözümlemeler getirilmektedir. Bu tez çalışmasında Batı Anadolu'da yer alan Çine-Tepecik arkeolojik yerleşiminden gün ışığına çıkarılmış insan iskelet kalıntıları incelenmiştir. Çine-Tepecik, Geç Neolitik/Kalkolitik dönemden itibaren Tunç Çağına kadar kesintisiz kültür tabakalarına sahiptir, aynı zamanda yerleşmede Helenistik/Roma dönemlerine tarihlendirilen mezarlar da buunmaktadır. Bahsi geçen tabakalardan 10 birey arkeogenomik inceleme için seçilmiştir. 10 Bireyin tamamından diş örnekleri, aynı bireylerin beşinden de ayrıca pars petrosa kemikleri seçilmiştir. Bu örneklerden aDNA elde edinimi yapılarak, mitokondri kalıtsal yapısında yer alan ve anasal soy hakkında fikir veren HVRI ve HVRII bölgeleri analiz edilmiş ve bu bireylere ait haplogruplar tespit edilmiş ve bunlar yayınlanmış diğer antik topluluklara ait verilerle berbaber değerlendirilmiştir. Ek olarak bireylere ait genomik kütüphaneler oluşturulmuş tüm genom analizleri yürütülmüştür. Elde edilen tüm genom verileri, antik genom bilgileri yayınlanmış diğer arkeolojik topluluklar ile karşılaştırılarak, Çine-Tepecik insan örneklerinin eski Anadolu ve Batı Avrasya popülasyonlarındaki konumu tartışılmıştır. mtDNA analizleri ve tüm genom çalışmaları sonucunda dört örnekte haplogrup tayini yapılabilmiştir. Genom çalışmalarından elde edilen veriler ışığında 8 bireyin biyolojik cinsiyetleri belirlenmiştir. Beş bireye ait PMD (ölüm sonrası baz değişimi) grafikleri çizilmiştir. Beş bireyin dördünde otantiklik düzeyi görülmüştür. Genom sonuçlarından elde edilen PCA grafiğine ve mtDNA haplogruplarına (J1d, H2 ve R) bakıldığında Çine-Tepecik örneklerinin eski Anadolu popülasyonları ile genetik benzerlik gösterdiği görülmüştür. There has been an increase in ancient DNA studies recently. With these new studies, the genetic structures, demographic information and relationships with other archaeological communities of contemporaries are revealed. In addition to this, new analyzes are introduced to the information obtained on the internal dynamics of the old human communities determined by archaeological and anthropological evaluations.In this thesis, human skeletal remains unearthed from the archaeological settlement of Çine-Tepecik in Western Anatolia were investigated. Çine-Tepecik has cultural layers covering the period from the Late Neolithic /Chalcolithic to the Bronze Age. It has also a cemetery dated Hellennistic/Roman Period. Ten individuals were selected for archaeogenomic examination. 10 dental specimens were selected from all individuals and Pars petrosa bones were selected from five of the same individuals. By obtaining aDNA from these samples, the HVRI and HVRII regions in the mitochondrial hereditary structure, which gave an idea about the maternal lineage, were analyzed and haplogroups of these individuals were identified and evaluated together with the data of other published ancient communities. In addition, genomic libraries of individuals were created and all genome analyzes were conducted. All genome data obtained were compared with other archaeological communities with ancient genome information published and the position of Çine-Tepecik human samples in ancient Anatolian and Western Eurasian populations was discussed.As a result of mtDNA analysis and whole genome studies, haplogroup determination was made in 4 samples. In the light of the data obtained from genome studies, biological sexes of 8 individuals were determined. PMD (postmortem damage) graphs of five individuals were plotted. Authenticity was observed in four of five individuals. When PCA graph and mtDNA haplogroups (J1d, H2 and R) obtained from genome results were examined, it was seen that Çine-Tepecik samples showed genetic similarity with the ancient Anatolian populations. 161

Published
2019

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