175 results on '"Ying-Xuan Chen"'
Search Results
2. Fusobacterium nucleatum stimulates cell proliferation and promotes PD-L1 expression via IFIT1-related signal in colorectal cancer
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Yaqi Gao, Tianhui Zou, Pingping Xu, Yingchao Wang, Yi Jiang, Ying-Xuan Chen, Haoyan Chen, Jie Hong, and Jing-Yuan Fang
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F. nucleatum ,Colorectal cancer ,m6A ,IFIT1 ,PD-L1 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Fusobacterium nucleatum (F. nucleatum) is enriched in colorectal cancer (CRC) tissues and a high amount of F. nucleatum was associated with an immunosuppressive tumor environment. PD-L1 is an important immune checkpoint expressed on tumor cells and promotes tumor immune escape. Whether PD-L1 is regulated by F. nucleatum is still unclear. We demonstrated that F. nucleatum promoted CRC progression and upregulated PD-L1 protein expression in CRC cell lines. Combined m6A-seq and RNA-seq identified m6A-modified IFIT1 mediating F. nucleatum induced PD-L1 upregulation. IFIT1 mRNA was modified with m6A modifications in 3’UTR and the m6A levels were altered by F. nucleatum treatment. Our results also indicated that IFIT1 served as a potential oncogene in CRC and regulated PD-L1 protein levels through altering PD-L1 ubiquitination. Clinical CRC data confirmed the correlation among F. nucleatum abundance, IFIT1 and PD-L1 expressions. Our work highlighted the function of F. nucleatum in stimulating PD-L1 expression through m6A-modified IFIT1 and provided new aspects for understanding F. nucleatum mediated immune escape.
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- 2023
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3. TRAPPC4 regulates the intracellular trafficking of PD-L1 and antitumor immunity
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Yimeng Ren, Yun Qian, Luoyan Ai, Yile Xie, Yaqi Gao, Ziyan Zhuang, Jinxian Chen, Ying-Xuan Chen, and Jing-Yuan Fang
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Science - Abstract
Transport protein particle (TRAPP) is a multimeric protein complex regulating membrane trafficking pathways. Here the authors show that TRAPPC4, a core subunit of TRAPP complex, is required for RAB11-mediated recycling of PD-L1, affecting T-cell-mediated anti-tumor immune responses.
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- 2021
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4. A specific tRNA half, 5’tiRNA-His-GTG, responds to hypoxia via the HIF1α/ANG axis and promotes colorectal cancer progression by regulating LATS2
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En-Wei Tao, Hao-Lian Wang, Wing Yin Cheng, Qian-Qian Liu, Ying-Xuan Chen, and Qin-Yan Gao
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Colorectal cancer ,Hypoxia ,LATS2 ,Hippo signaling pathway ,tRNA half ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Currently, tRNA-derived small RNAs (tsRNAs) are recognized as a novel and potential type of non-coding RNAs (ncRNAs), which participate in various cellular processes and play an essential role in cancer progression. However, tsRNAs involvement in colorectal cancer (CRC) progression remains unclear. Methods Sequencing analyses were performed to explore the tsRNAs with differential expression in CRC. Gain- and loss-of functions of 5’tiRNA-His-GTG were performed in CRC cells and xenograft tumor to discover its role in the progression of CRC. Hypoxia culture and hypoxia inducible factor 1 subunit alpha (HIF1α) inhibitors were performed to uncover the biogenesis of 5’tiRNA-His-GTG. The regulation of 5’tiRNA-His-GTG for large tumor suppressor kinase 2 (LATS2) were identified by luciferase reporter assay, western blot, and rescue experiments. Results Here, our study uncovered the profile of tsRNAs in human CRC tissues and confirmed a specific tRNA half, 5’tiRNA-His-GTG, is upregulated in CRC tissues. Then, in vitro and in vivo experiments revealed the oncogenic role of 5’tiRNA-His-GTG in CRC and found that targeting 5’tiRNA-His-GTG can induce cell apoptosis. Mechanistically, the generation of 5’tiRNA-His-GTG seems to be a responsive process of tumor hypoxic microenvironment, and it is regulated via the HIF1α/angiogenin (ANG) axis. Remarkably, LATS2 was found to be an important and major target of 5’tiRNA-His-GTG, which renders 5’tiRNA-His-GTG to “turn off” hippo signaling pathway and finally promotes the expression of pro-proliferation and anti-apoptosis related genes. Conclusions In summary, the findings revealed a specific 5’tiRNA-His-GTG-engaged pathway in CRC progression and provided clues to design a novel therapeutic target in CRC.
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- 2021
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5. Germline mutations in a DNA repair pathway are associated with familial colorectal cancer
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Pingping Xu, Danfeng Sun, Yaqi Gao, Yi Jiang, Ming Zhong, Gang Zhao, Jinxian Chen, Zheng Wang, Qiang Liu, Jie Hong, Haoyan Chen, Ying-Xuan Chen, and Jing-Yuan Fang
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Gastroenterology ,Genetics ,Medicine - Abstract
Aiming to identify rare high-penetrance mutations in new genes for the underlying predisposition in familial colorectal cancer (CRC), we performed whole-exome sequencing in 24 familial CRCs. Mutations in genes that regulate DNA repair (RMI1, PALB2, FANCI) were identified that were related to the Fanconi anemia DNA repair pathway. In one pedigree, we found a nonsense mutation in CHEK2. CHEK2 played an essential role in cell cycle and DNA damage repair. Somatic mutation analysis in CHEK2 variant carriers showed mutations in TP53, APC, and FBXW7. Loss of heterozygosity was found in carcinoma of CHEK2 variant carrier, and IHC showed loss of Chk2 expression in cancer tissue. We identified a second variant in CHEK2 in 126 sporadic CRCs. A KO cellular model for CHEK2 (CHEK2KO) was generated by CRISPR/Cas9. Functional experiments demonstrated that CHEK2KO cells showed defective cell cycle arrest and apoptosis, as well as reduced p53 phosphorylation, upon DNA damage. We associated germline mutations in genes that regulate the DNA repair pathway with the development of CRC. We identified CHEK2 as a regulator of DNA damage response and perhaps as a gene involved in CRC germline predisposition. These findings link CRC predisposition to the DNA repair pathway, supporting the connection between genome integrity and cancer risk.
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- 2021
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6. Case report of cryptogenic multifocal ulcerous stenosing enteritis (CMUSE): a rare disease may contribute to endoscopy-capsule retention in the small intestine
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En-Wei Tao, Tian-Hui Zou, Yong-Feng Wang, Jie-Ting Tang, Ying-Xuan Chen, and Qin-Yan Gao
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Cryptogenic multifocal ulcerous stenosing enteritis ,Capsule retention ,Diagnosis ,Anemia ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Abstract Background CMUSE is a rare disease whose diagnosis remains difficult because the lesion is confined to the small bowel. Case presentation Here, we present a case of 43-year-old female patient suffered chronic abdominal pain for 20 years, and finally diagnosed with CMUSE. Capsule endoscopy was performed when general endoscopic investigation failed to find the lesion, but the capsule was stranded in the small intestine. Moreover, capsule retention results in acute intestinal obstruction. Thus, surgery was performed and CMUSE was confirmed. The patient was recovered after partial small intestine resection. Conclusions Capsule retention occurred in nearly 60% of patients with CMUSE. Capsule endoscopy should be avoided when the patient is suspected of CMUSE, especially with severe anemia and radiologic finding in the ileum.
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- 2019
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7. ZFP90 drives the initiation of colitis-associated colorectal cancer via a microbiota-dependent strategy
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Ji-Xuan Han, Zhi-Hang Tao, Yun Qian, Chen-Yang Yu, Jialu Li, Zi-Ran Kang, Shiyuan Lu, Yuanhong Xie, Jie Hong, Haoyan Chen, Ying-Xuan Chen, and Jing-Yuan Fang
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zfp90 ,gut microbiota ,colitis-associated colorectal cancer ,gut barrier ,prevotella copri ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Chronic inflammation and gut microbiota dysbiosis are risk factors for colorectal cancer. In clinical practice, patients with inflammatory bowel disease (IBD) have a greatly increased risk of developing colitis-associated colorectal cancer (CAC). However, the underlying mechanism of the initiation of CAC remains unknown. Systematic analyses using an existing genome-wide association study (GWAS) and conditional deletion of Zfp90 (encoding zinc finger protein 90 homolog) in a CAC mouse model indicated that Zfp90 is a putative oncogene in CAC development. Strikingly, depletion of the gut microbiota eliminated the tumorigenic effect of Zfp90 in the CAC mouse model. Moreover, fecal microbiota transplantation demonstrated that Zfp90 promoted CAC dependent on the gut microbiota. Analysis of 16s rDNA sequences in fecal specimens from the CAC mouse model allowed us to speculate that a Prevotella copri-defined microbiota might mediate the oncogenic role of Zfp90 in the development of CAC. Mechanistic studies revealed Zfp90 accelerated CAC development through the TLR4-PI3K-AKT-NF-κB pathway. Our findings revealed the crucial role of the Zfp90-microbiota-NF-κB axis in creating a tumor-promoting environment and suggested therapeutic targets for CAC prevention and treatment.
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- 2021
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8. Enterotoxigenic Bacteroides fragilis induces the stemness in colorectal cancer via upregulating histone demethylase JMJD2B
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Qian-Qian Liu, Chun-Min Li, Lin-Na Fu, Hao-Lian Wang, Juan Tan, Yun-Qian Wang, Dan-Feng Sun, Qin-Yan Gao, Ying-Xuan Chen, and Jing-Yuan Fang
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enterotoxigenic bacteroides fragilis ,colorectal cancer ,stemness ,histone demethylase ,jmjd2b ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
The enrichment of Enterotoxigenic Bacteroides fragilis (ETBF) has been identified in CRC patients and associated with worse prognosis. Cancer stem cells (CSCs) play essential roles in CRC development. However, whether ETBF is involved in CSCs regulation is unknown. To clarify the role of ETBF in CSCs properties, we performed extreme limited dilution assays (ELDA) in nude mice injected with ETBF-treated or untreated CRC cells subcutaneously, tumor organoids culture in azoxymethane (AOM) mouse model after gavaging with or without ETBF, and cell sphere formation assay after incubating CRC cell lines with or without ETBF. The results indicated that ETBF increased the stemness of CRC cells in vivo and in vitro. Furthermore, ETBF enhanced the expression of core stemness transcription factors Nanog homeobox (NANOG) and sex determining region Y-box 2 (SOX2). Histone H3 Lysine 9 trimethylation (H3K9me3) is critical in regulating CSCs properties. As an epigenetic and transcriptional regulator, JmjC-domain containing histone demethylase 2B (JMJD2B) is essential for embryonic stem cell (ESC) transformation and H3K9me3 demethylation. Mechanistically, ETBF infection significantly upregulated JMJD2B levels in CRC cell lines and nude mice xenograft model. JMJD2B epigenetically upregulated NANOG expression via demethylating its promoter H3K9me3, to mediate ETBF-induced stemness of CRC cells. Subsequently, we found that the Toll-like receptor 4 (TLR4) pathway, activated by ETBF, contributed to the enhanced expression of JMJD2B via nuclear transcription factor nuclear factor of activated T cells 5 (NFAT5). Finally, in human CRC samples, the amount of ETBF positively correlated with nuclear NFAT5, JMJD2B, and NANOG expression levels. In summary, ETBF upregulated JMJD2B levels in a TLR4-NFAT5-dependent pathway, and played an important role in stemness regulation, which promoted colorectal carcinogenesis.
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- 2020
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9. Sirtuin5 contributes to colorectal carcinogenesis by enhancing glutaminolysis in a deglutarylation-dependent manner
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Yun-Qian Wang, Hao-Lian Wang, Jie Xu, Juan Tan, Lin-Na Fu, Ji-Lin Wang, Tian-Hui Zou, Dan-Feng Sun, Qin-Yan Gao, Ying-Xuan Chen, and Jing-Yuan Fang
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Science - Abstract
Tumour metabolism can be controlled through post-translational modifications. Here the authors show that Sirtuin5 promotes glutaminolysis in colorectal cancer cells via glutamate dehydrogenase-1, a critical regulator of glutaminolysis, inducing its deglutarylation and functional activation.
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- 2018
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10. Fecal Clostridium symbiosum for Noninvasive Detection of Early and Advanced Colorectal Cancer: Test and Validation Studies
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Yuan-Hong Xie, Qin-Yan Gao, Guo-Xiang Cai, Xiao-Ming Sun, Tian-Hui Zou, Hui-Min Chen, Si-Yi Yu, Yi-Wen Qiu, Wei-Qi Gu, Xiao-Yu Chen, Yun Cui, Danfeng Sun, Zhan-Ju Liu, San-Jun Cai, Jie Xu, Ying-Xuan Chen, and Jing-Yuan Fang
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Colorectal cancer ,Early diagnosis ,Clostridium symbiosum ,Quantitative PCR ,Medicine ,Medicine (General) ,R5-920 - Abstract
Objective: Current non-invasive early detection of colorectal cancer (CRC) requires improvement. We aimed to identified a fecal Clostridium symbiosum-based biomarker for early and advanced colorectal cancer detection. Design: In the test stage, the relative abundance of Clostridium symbiosum (C. symbiosum) was measured by qPCR in 781 cases including 242 controls, 212 colorectal adenoma (CRA) patients, 109 early CRC (tumor restricted to the submucosa) patients, 218 advanced CRC patients. The prediction accuracy was compared to Fusobacterium nucleatum (F. nucleatum), fecal immunochemical test (FIT) and CEA (carcinoembryonic antigen) and validated in an independent cohort of 256 subjects. Current status of the trial:ongoing/still enrolling. Primary endpoint:June, 2017 (Clinicaltrials.gov Identifier NCT02845973). Results: Significant stepwise increase of C. symbiosum abundance was found in CRA, early CRC and advanced CRC (P
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- 2017
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11. Correction to: Case report of cryptogenic multifocal ulcerous stenosing enteritis (CMUSE): a rare disease may contribute to endoscopy-capsule retention in the small intestine
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En-Wei Tao, Tian-Hui Zou, Yong-Feng Wang, Jie-Ting Tang, Ying-Xuan Chen, and Qin-Yan Gao
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Following publication of the original article [1], the author reported the wrong version of Table 1 has been published. The word of 'Capsule' was mistakenly written as 'Capusle'.
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- 2019
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12. Inhibition of JAK1, 2/STAT3 Signaling Induces Apoptosis, Cell Cycle Arrest, and Reduces Tumor Cell Invasion in Colorectal Cancer Cells
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Hua Xiong, Zhi-Gang Zhang, Xiao-Qing Tian, Dan-Feng Sun, Qin-Chuan Liang, Yan-Jie Zhang, Rong Lu, Ying-Xuan Chen, and Jing-Yuan Fang
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abnormalities in the STAT3 pathway are involved in the oncogenesis of several cancers. However, the mechanism by which dysregulated STAT3 signaling contributes to the progression of human colorectal cancer (CRC) has not been elucidated, nor has the role of JAK, the physiological activator of STAT3, been evaluated. To investigate the role of both JAK and STAT3 in CRC progression, we inhibited JAK with AG490 and depleted STAT3 with a SiRNA. Our results demonstrate that STAT3 and both JAK1 and 2 are involved in CRC cell growth, survival, invasion, and migration through regulation of gene expression, such as Bcl-2, p16ink4a, p21waf1/cip1, p27kip1, E-cadherin, VEGF, and MMPs. Importantly, the FAK is not required for STAT3-mediated regulation, but does function downstream of JAK. In addition, our data show that proteasome-mediated proteolysis promotes dephosphorylation of the JAK2, and consequently, negatively regulates STAT3 signaling in CRC. Moreover, immunohistochemical staining reveals that nuclear staining of phospho-STAT3 mostly presents in adenomas and adenocarcinomas, and a positive correlation is found between phospho-JAK2 immunoreactivity and the differentiation of colorectal adenocarcinomas. Therefore, our findings illustrate the biologic significance of JAK1, 2/STAT3 signaling in CRC progression and provide novel evidence that the JAK/STAT3 pathway may be a new potential target for therapy of CRC.
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- 2008
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13. TRAPPC4-ERK2 interaction activates ERK1/2, modulates its nuclear localization and regulates proliferation and apoptosis of colorectal cancer cells.
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Shu-Liang Zhao, Jie Hong, Zuo-Quan Xie, Jie-Ting Tang, Wen-Yu Su, Wan Du, Ying-Xuan Chen, Rong Lu, Dan-Feng Sun, and Jing-Yuan Fang
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Medicine ,Science - Abstract
The trafficking protein particle complex 4 (TRAPPC4) is implicated in vesicle-mediated transport, but its association with disease has rarely been reported. We explored its potential interaction with ERK2, part of the ERK1/2 complex in the Extracellular Signal-regulated Kinase/ Mitogen-activated Protein Kinase (ERK-MAPK) pathway, by a yeast two-hybrid screen and confirmed by co-immunoprecipitation (Co-IP) and glutathione S-transferase (GST) pull-down. Further investigation found that when TRAPPC4 was depleted, activated ERK1/2 specifically decreased in the nucleus, which was accompanied with cell growth suppression and apoptosis in colorectal cancer (CRC) cells. Overexpression of TRAPPC4 promoted cell viability and caused activated ERK1/2 to increase overall, but especially in the nucleus. TRAPPC4 was expressed more highly in the nucleus of CRC cells than in normal colonic epithelium or adenoma which corresponded with nuclear staining of pERK1/2. We demonstrate here that TRAPPC4 may regulate cell proliferation and apoptosis in CRC by interaction with ERK2 and subsequently phosphorylating ERK1/2 as well as modulating the subcellular location of pERK1/2 to activate the relevant signaling pathway.
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- 2011
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14. On-chip CMOS Corner Detector Design for Panel Drivers.
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Pang-Yen Lou, Ying-Xuan Chen, and Chua-Chin Wang
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- 2021
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15. Microbiota-derived tryptophan catabolites mediate the chemopreventive effects of statins on colorectal cancer
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Ji-Xuan Han, Zhi-Hang Tao, Ji-Lin Wang, Lu Zhang, Chen-Yang Yu, Zi-Ran Kang, Yuanhong Xie, Jialu Li, Shiyuan Lu, Yun Cui, Jia Xu, Enhao Zhao, Ming Wang, Jinxian Chen, Zheng Wang, Qiang Liu, Hui-Min Chen, Wenyu Su, Tian-Hui Zou, Cheng-Bei Zhou, Jie Hong, Haoyan Chen, Hua Xiong, Ying-Xuan Chen, and Jing-Yuan Fang
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Microbiology (medical) ,Immunology ,Genetics ,Cell Biology ,Applied Microbiology and Biotechnology ,Microbiology - Published
- 2023
16. tRNA modifications: insights into their role in human cancers
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Ye Wang, En-Wei Tao, Juan Tan, Qin-Yan Gao, Ying-Xuan Chen, and Jing-Yuan Fang
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Cell Biology - Published
- 2023
17. Data from miR-194 as a Predictor for Adenoma Recurrence in Patients with Advanced Colorectal Adenoma after Polypectomy
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Jing-Yuan Fang, Jie Hong, Xiao-Yu Chen, Zhi-Zheng Ge, Ying-Xuan Chen, Yan-Wei Lin, Ji-Lin Wang, Ya-Nan Yu, Hai-Ming Zheng, Ping Zheng, Lin-Lin Ren, and Zhen-Hua Wang
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microRNAs (miRNA) are promising predictors in colorectal cancer (CRC). We investigated whether miRNAs could predict adenoma recurrence in patients with advanced colorectal adenoma (ACRA) after polypectomy. miRNA expression profiling was performed by miRNA microarray to identify recurrence-related miRNAs. Candidate miRNAs extracted from formalin-fixed paraffin-embedded blocks of patients with ACRA were measured using real-time PCR. Logistic regression analysis was conducted to investigate whether validated miRNA expression profiles were independent from other known adenoma recurrence risk factors. The prognostic values of six miRNAs and three independent risk factors were assessed by the area under the receiver operating characteristic (ROC) curve analysis. The expressions of six candidate miRNAs were significantly decreased from levels in normal colorectal tissue compared with ARCA with adenoma recurrence (RACRA) in this retrospective cohort. However, only miRNA (miR)-194 emerged as a practical predictor. The sensitivity and specificity of miR-194 as a predictor were 71.0% and 78.0%, respectively, at a cutoff value of 0.1311 in the retrospective cohort. Sensitivity and specificity were 76.1% and 77.2%, respectively, in the prospective cohort using the same cutoff value. Low expression levels of miR-194, adenoma size ≥2 cm, and ≥3 adenomas were independent risk factors for adenoma recurrence. Moreover, low expression of miR-194 was a better predictor of adenoma recurrence than the adenoma size and numbers according to ROC curve analysis. miR-194 may be an independent predictor for adenoma recurrence in patients with ACRA after polypectomy. Cancer Prev Res; 7(6); 607–16. ©2014 AACR.
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- 2023
18. Supplementary Tables 8 - 9 from LncRNA GClnc1 Promotes Gastric Carcinogenesis and May Act as a Modular Scaffold of WDR5 and KAT2A Complexes to Specify the Histone Modification Pattern
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Jing-Yuan Fang, Weiping Zou, Haoyan Chen, Jie Hong, Ying-Xuan Chen, Danfeng Sun, Yanwei Lin, Ye Hu, Yu-Jie Bao, Jia-Yin Tang, Ta-Chung Yu, Ting-Ting Yan, Lin-Lin Ren, Qian Liang, Jie He, and Tian-Tian Sun
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Supplementary Table 8. Sequence of primers for real-time PCR. Supplementary Table 9. Sequence of primers for CHIP real-time PCR.
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- 2023
19. Supplementary Table 5 from LncRNA GClnc1 Promotes Gastric Carcinogenesis and May Act as a Modular Scaffold of WDR5 and KAT2A Complexes to Specify the Histone Modification Pattern
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Jing-Yuan Fang, Weiping Zou, Haoyan Chen, Jie Hong, Ying-Xuan Chen, Danfeng Sun, Yanwei Lin, Ye Hu, Yu-Jie Bao, Jia-Yin Tang, Ta-Chung Yu, Ting-Ting Yan, Lin-Lin Ren, Qian Liang, Jie He, and Tian-Tian Sun
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Supplementary Table 5. Proteins in the two distict bands specific to GClnc1 identified by Liquid Chromatography-Mass Spectrometry.
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- 2023
20. Supplementary Table 4 from LncRNA GClnc1 Promotes Gastric Carcinogenesis and May Act as a Modular Scaffold of WDR5 and KAT2A Complexes to Specify the Histone Modification Pattern
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Jing-Yuan Fang, Weiping Zou, Haoyan Chen, Jie Hong, Ying-Xuan Chen, Danfeng Sun, Yanwei Lin, Ye Hu, Yu-Jie Bao, Jia-Yin Tang, Ta-Chung Yu, Ting-Ting Yan, Lin-Lin Ren, Qian Liang, Jie He, and Tian-Tian Sun
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Supplementary Table 4. RNA-seq analysis in BGC823 cells after GClnc1 shRNA and control shRNA transfection.
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- 2023
21. Supplementary Table 3 from miR-194 as a Predictor for Adenoma Recurrence in Patients with Advanced Colorectal Adenoma after Polypectomy
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Jing-Yuan Fang, Jie Hong, Xiao-Yu Chen, Zhi-Zheng Ge, Ying-Xuan Chen, Yan-Wei Lin, Ji-Lin Wang, Ya-Nan Yu, Hai-Ming Zheng, Ping Zheng, Lin-Lin Ren, and Zhen-Hua Wang
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PDF - 114K, Differential miRs expression levels between NRACRA tissues and RACRA tissues in miR microarray.
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- 2023
22. Supplementary Tables 6 - 7 from LncRNA GClnc1 Promotes Gastric Carcinogenesis and May Act as a Modular Scaffold of WDR5 and KAT2A Complexes to Specify the Histone Modification Pattern
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Jing-Yuan Fang, Weiping Zou, Haoyan Chen, Jie Hong, Ying-Xuan Chen, Danfeng Sun, Yanwei Lin, Ye Hu, Yu-Jie Bao, Jia-Yin Tang, Ta-Chung Yu, Ting-Ting Yan, Lin-Lin Ren, Qian Liang, Jie He, and Tian-Tian Sun
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Supplementary Table 6. A, ChIP-Seq Library Statistics. B, ChIP-Seq Library Peak Calls. C, WDR5 and KAT2A peaks within 2kb of RefSeq gene promoters where read coverage were significant decreased in BGC823 GC cells after transduction of GClnc1 shRNA virus,compared with transduction of control shRNA virus. D, the differentiated expression genes in BGC823 cells after downregulation of GClnc1. E, Intersection of ChIP-Seq and RNA seq data. Supplementary Table 7. The association between GClnc1 with target genes in the coexpression network analysis.
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- 2023
23. Supplementary Methods from LncRNA GClnc1 Promotes Gastric Carcinogenesis and May Act as a Modular Scaffold of WDR5 and KAT2A Complexes to Specify the Histone Modification Pattern
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Jing-Yuan Fang, Weiping Zou, Haoyan Chen, Jie Hong, Ying-Xuan Chen, Danfeng Sun, Yanwei Lin, Ye Hu, Yu-Jie Bao, Jia-Yin Tang, Ta-Chung Yu, Ting-Ting Yan, Lin-Lin Ren, Qian Liang, Jie He, and Tian-Tian Sun
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Supplementary Methods
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- 2023
24. Supplementary Table 2 from miR-194 as a Predictor for Adenoma Recurrence in Patients with Advanced Colorectal Adenoma after Polypectomy
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Jing-Yuan Fang, Jie Hong, Xiao-Yu Chen, Zhi-Zheng Ge, Ying-Xuan Chen, Yan-Wei Lin, Ji-Lin Wang, Ya-Nan Yu, Hai-Ming Zheng, Ping Zheng, Lin-Lin Ren, and Zhen-Hua Wang
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PDF - 114K, Differential miRs expression levels between normal colorectal tissues (Normal) and NRACRA tissues in miR microarray.
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- 2023
25. Supplementary Figures 1 - 7 from LncRNA GClnc1 Promotes Gastric Carcinogenesis and May Act as a Modular Scaffold of WDR5 and KAT2A Complexes to Specify the Histone Modification Pattern
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Jing-Yuan Fang, Weiping Zou, Haoyan Chen, Jie Hong, Ying-Xuan Chen, Danfeng Sun, Yanwei Lin, Ye Hu, Yu-Jie Bao, Jia-Yin Tang, Ta-Chung Yu, Ting-Ting Yan, Lin-Lin Ren, Qian Liang, Jie He, and Tian-Tian Sun
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Supplementary Figure 1, related to Figure 1. Clinical relevance of lncRNA candidate BC041951 in gastric cancer. Supplementary Figure 2, related to Figure 2. Gene Ontology (GO) and Gene Set Enrichment Analysis (GSEA) in gastric cancer cells and gastric cancer patients with high and low GClnc1 expression. Supplementary Figure 3, related to Figure 3. GClnc1 is an oncogenic lncRNA in gastric cancer. Supplementary Figure 4, related to Figure 4. GClnc1 interacts with WDR5 and KAT2A epigenetic modification complex. Supplementary Figure 5, related to Figure 5. GClnc1 coordinates the localization of WDR5 and KAT2A genome-wide. Supplementary Figure 6, related to Figure 6. GClnc1 promotes gastric cancer progression via SOD2. Supplementary Figure 7, related to Figure 7. GClnc1 is a molecular link among WDR5/KAT2A and SOD2.
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- 2023
26. Supplementary Table 1 from miR-194 as a Predictor for Adenoma Recurrence in Patients with Advanced Colorectal Adenoma after Polypectomy
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Jing-Yuan Fang, Jie Hong, Xiao-Yu Chen, Zhi-Zheng Ge, Ying-Xuan Chen, Yan-Wei Lin, Ji-Lin Wang, Ya-Nan Yu, Hai-Ming Zheng, Ping Zheng, Lin-Lin Ren, and Zhen-Hua Wang
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PDF - 111K, Characteristics of study population and advanced colorectal adenoma.
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- 2023
27. Data from miR-508 Defines the Stem-like/Mesenchymal Subtype in Colorectal Cancer
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Jing-Yuan Fang, Jie Hong, Hao-Yan Chen, Weiping Zou, Qiang Liu, Jinxian Chen, Ming Zhong, Ilona Kryczek, Piotr Radwan, Marek Majewski, Witold Zgodzinski, Dan-Feng Sun, Ying-Xuan Chen, Jia-Yin Tang, Qian Liang, Ya-Nan Yu, Zhen-Hua Wang, Chao-Qin Shen, Lin-Lin Ren, and Ting-Ting Yan
- Abstract
Colorectal cancer includes an invasive stem-like/mesenchymal subtype, but its genetic drivers, functional, and clinical relevance are uncharacterized. Here we report the definition of an altered miRNA signature defining this subtype that includes a major genomic loss of miR-508. Mechanistic investigations showed that this miRNA affected the expression of cadherin CDH1 and the transcription factors ZEB1, SALL4, and BMI1. Loss of miR-508 in colorectal cancer was associated with upregulation of the novel hypoxia-induced long noncoding RNA AK000053. Ectopic expression of miR-508 in colorectal cancer cells blunted epithelial-to-mesenchymal transition (EMT), stemness, migration, and invasive capacity in vitro and in vivo. In clinical colorectal cancer specimens, expression of miR-508 negatively correlated with stemness and EMT-associated gene expression and positively correlated with patient survival. Overall, our results showed that miR-508 is a key functional determinant of the stem-like/mesenchymal colorectal cancer subtype and a candidate therapeutic target for its treatment.Significance: These results define a key functional determinant of a stem-like/mesenchymal subtype of colorectal cancers and a candidate therapeutic target for its treatment. Cancer Res; 78(7); 1751–65. ©2018 AACR.
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- 2023
28. Supplementary Tables from miR-508 Defines the Stem-like/Mesenchymal Subtype in Colorectal Cancer
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Jing-Yuan Fang, Jie Hong, Hao-Yan Chen, Weiping Zou, Qiang Liu, Jinxian Chen, Ming Zhong, Ilona Kryczek, Piotr Radwan, Marek Majewski, Witold Zgodzinski, Dan-Feng Sun, Ying-Xuan Chen, Jia-Yin Tang, Qian Liang, Ya-Nan Yu, Zhen-Hua Wang, Chao-Qin Shen, Lin-Lin Ren, and Ting-Ting Yan
- Abstract
This file contains supplementary tables 1-7 and the main information was described as follows. Table S1. All primers for real time PCR assay. Table S2. Differentially expressed genes between mesenchymal subtype and other non stem-like. Table S3. microRNA in stem-like/EMT CRC patients. Table S4. Full list of the predicted targets for the four key miRNAs. Table S5. Clinical information of 90 cases CRC patients (Renji cohort 1). Table S6. Clinical information of 100 cases CRC patients (Renji cohort 2). Table S7. Clinical information of 128 cases CRC patients (European cohort).
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- 2023
29. Supplementary Figure Legends from miR-508 Defines the Stem-like/Mesenchymal Subtype in Colorectal Cancer
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Jing-Yuan Fang, Jie Hong, Hao-Yan Chen, Weiping Zou, Qiang Liu, Jinxian Chen, Ming Zhong, Ilona Kryczek, Piotr Radwan, Marek Majewski, Witold Zgodzinski, Dan-Feng Sun, Ying-Xuan Chen, Jia-Yin Tang, Qian Liang, Ya-Nan Yu, Zhen-Hua Wang, Chao-Qin Shen, Lin-Lin Ren, and Ting-Ting Yan
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This file contains figure legends corresponding to supplementary figures.
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- 2023
30. Supplementary Methods from miR-508 Defines the Stem-like/Mesenchymal Subtype in Colorectal Cancer
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Jing-Yuan Fang, Jie Hong, Hao-Yan Chen, Weiping Zou, Qiang Liu, Jinxian Chen, Ming Zhong, Ilona Kryczek, Piotr Radwan, Marek Majewski, Witold Zgodzinski, Dan-Feng Sun, Ying-Xuan Chen, Jia-Yin Tang, Qian Liang, Ya-Nan Yu, Zhen-Hua Wang, Chao-Qin Shen, Lin-Lin Ren, and Ting-Ting Yan
- Abstract
This file contains methods which were not included in the main text.
- Published
- 2023
31. A CMOS On-Chip High-Precision PVTL Detector
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Pang-Yen Lou, Ying-Xuan Chen, Chua-Chin Wang, and Wei-Chih Chang
- Subjects
Physics and Astronomy (miscellaneous) ,Management of Technology and Innovation ,Engineering (miscellaneous) - Published
- 2022
32. Fusobacterium nucleatum-derived succinic acid induces tumor resistance to immunotherapy in colorectal cancer
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Shan-Shan Jiang, Yi-Le Xie, Xiu-Ying Xiao, Zi-Ran Kang, Xiao-Lin Lin, Lu Zhang, Chu-Shu Li, Yun Qian, Ping-Ping Xu, Xiao-Xu Leng, Li-Wei Wang, Shui-Ping Tu, Ming Zhong, Gang Zhao, Jin-Xian Chen, Zheng Wang, Qiang Liu, Jie Hong, Hao-Yan Chen, Ying-Xuan Chen, and Jing-Yuan Fang
- Subjects
Virology ,Parasitology ,Microbiology - Published
- 2023
33. Urea cycle activation triggered by host-microbiota maladaptation driving colorectal tumorigenesis
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Haoyan Chen, Tianying Tong, Shi-Yuan Lu, Linhua Ji, Baoqin Xuan, Gang Zhao, Yuqing Yan, Linhong Song, Licong Zhao, Yile Xie, Xiaoxu Leng, Xinyu Zhang, Yun Cui, Xiaoyu Chen, Hua Xiong, TaChung Yu, Xiaobo Li, Tiantian Sun, Zheng Wang, Jinxian Chen, Ying-Xuan Chen, Jie Hong, and Jing-Yuan Fang
- Subjects
Physiology ,Cell Biology ,Molecular Biology - Published
- 2023
34. F. nucleatum targets lncRNA ENO1-IT1 to promote glycolysis and oncogenesis in colorectal cancer
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Xinyu Zhang, Ming Zhong, Jie Hong, Tian-Tian Sun, Haoyan Chen, Yanshen Peng, Xiong Ma, Jing-Yuan Fang, Cheng Wang, Yun Qian, Dan Ma, Tingting Yan, Shiyuan Lu, TaChung Yu, Jinxian Chen, Fangfang Guo, Yile Xie, Chaoqin Shen, Qiang Liu, Jianjun Liu, Ying-Xuan Chen, and Xiang Zhou
- Subjects
0301 basic medicine ,Sp1 transcription factor ,biology ,Colorectal cancer ,Cell ,Gastroenterology ,Promoter ,Histone acetyltransferase ,medicine.disease_cause ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Histone ,medicine.anatomical_structure ,Transcription (biology) ,030220 oncology & carcinogenesis ,biology.protein ,medicine ,Cancer research ,Carcinogenesis - Abstract
ObjectiveMicrobiota disorder promotes chronic inflammation and carcinogenesis. High glycolysis is associated with poor prognosis in patients with colorectal cancer (CRC). However, the potential correlation between the gut microbiota and glucose metabolism is unknown in CRC.Design18F-FDG (18F-fluorodeoxyglucose) PET (positron emission tomography)/CT image scanning data and microbiota PCR analysis were performed to measure the correlation between metabolic alterations and microbiota disorder in 33 patients with CRC. Multiple colorectal cancer models, metabolic analysis and Seahorse assay were established to assess the role of long non-coding RNA (lncRNA) enolase1-intronic transcript 1 (ENO1-IT1) in Fusobacterium (F.) nucleatum-induced glucose metabolism and colorectal carcinogenesis. RNA immunoprecipitation and chromatin immunoprecipitation sequencing were conducted to identify potential targets of lncRNA ENO1-IT1.ResultsWe have found F. nucleatum abundance correlated with high glucose metabolism in patients with CRC. Furthermore, F. nucleatum supported carcinogenesis via increasing CRC cell glucose metabolism. Mechanistically, F. nucleatum activated lncRNA ENO1-IT1 transcription via upregulating the binding efficiency of transcription factor SP1 to the promoter region of lncRNA ENO1-IT1. Elevated ENO1-IT behaved as a guider modular for KAT7 histone acetyltransferase, specifying the histone modification pattern on its target genes, including ENO1, and consequently altering CRC biological function.ConclusionF. nucleatum and glucose metabolism are mechanistically, biologically and clinically connected to CRC. Targeting ENO1 pathway may be meaningful in treating patients with CRC with elevated F. nucleatum.
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- 2020
35. Tolvaptan therapy of Chinese cirrhotic patients with ascites after insufficient diuretic routine medication responses: a phase III clinical trial
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Chengwei Chen, Xiangjun Jiang, Feng Ji, Zheng-Hua Wang, Jidong Jia, Yongfeng Wang, Jia Shang, Yue-qiu Gao, Tao Han, Yimin Mao, Huiguo Ding, Junqi Niu, Qing Mao, Zhong Wei, Ying-Xuan Chen, Nonghua Lv, Jie-Ting Tang, Jun Cheng, Minde Zeng, and Qin Zhang
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China ,medicine.medical_specialty ,Combination therapy ,medicine.drug_class ,medicine.medical_treatment ,Tolvaptan ,Gastroenterology ,chemistry.chemical_compound ,Internal medicine ,Ascites ,Clinical endpoint ,Humans ,Medicine ,lcsh:RC799-869 ,Diuretics ,Aldosterone ,business.industry ,Cirrhotic patients ,General Medicine ,Benzazepines ,Loop diuretic ,Clinical trial ,chemistry ,Liver cirrhosis ,lcsh:Diseases of the digestive system. Gastroenterology ,Diuretic ,medicine.symptom ,business ,Antidiuretic Hormone Receptor Antagonists ,Research Article ,medicine.drug - Abstract
Background To determine the safety and efficacy of different doses of tolvaptan for treating Chinese cirrhotic patients with or without hyponatraemia who still had ascites after routine therapy with diuretics. Methods In the present placebo-controlled, randomized, double-blinded, multicentre clinical trial, patients with cirrhotic ascites who failed to adequately respond to a combination of an aldosterone antagonist plus an orally administered loop diuretic were randomly placed at a 4:2:1 ratio into 3 groups [the 15 mg/day tolvaptan group (N = 301), 7.5 mg/day tolvaptan group (N = 153) and placebo group (N = 76)] for 7 days of treatment. The effects and safety were evaluated on days 4 and 7. A change in body weight from baseline on day 7 of treatment was the primary endpoint. Results The administration of 7.5 or 15 mg/day tolvaptan significantly decreased body weight from baseline on day 7 of treatment compared to that with placebo treatment (P = 0.026; P = 0.001). For the secondary endpoints, changes in abdominal circumference from baseline and improvements in ascites were markedly different in the treatment groups and the placebo group on day 7 (P7.5 = 0.05, P15.0 = 0.002 and P7.5 = 0.037, P15.0 = 0.003), but there was no difference between the 7.5 mg/day and 15 mg/day dosage groups. The 24-h cumulative urine volume was higher in the 7.5 mg/day and 15 mg/day tolvaptan groups than the placebo group (P = 0.002, P P = 0.004). Sodium serum concentrations were higher in patients with hyponatraemia after tolvaptan treatment, with no significant difference between the two dosage groups. The incidence of serious adverse drug reactions was not different between the groups (P = 0.543). Conclusions Tolvaptan treatment at 7.5 mg per day might be a good therapeutic choice for Chinese cirrhotic patients with ascites who did not achieve satisfactory clinical responses to previous treatment regimens with combination therapy with an aldosterone antagonist and an orally administered loop diuretic. Trial registration NCT01349348. Retrospectively registered May 2011.
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- 2020
36. Berberine versus placebo for the prevention of recurrence of colorectal adenoma: a multicentre, double-blinded, randomised controlled study
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Side Liu, Xiaoping Zou, Xiao-Chuang Cao, Zhanju Liu, Qian Kang, Na Li, Xiao-Ning Yang, Bangmao Wang, Ying-Xuan Chen, Yan-Yan Song, Qin-Yan Gao, Bing Xiao, Xiao-Min Sun, Huimin Chen, Jing-Yuan Fang, Hongzhi Xu, Hailong Cao, Wei Zhu, Jianqiu Sheng, Xiao-Tan Dou, Jian-Lin Ren, and Tian-Hui Zou
- Subjects
Adenoma ,Adult ,China ,medicine.medical_specialty ,Adolescent ,Berberine ,Colorectal cancer ,medicine.medical_treatment ,Aftercare ,Colonoscopy ,Colorectal adenoma ,Placebo ,Chemoprevention ,law.invention ,Placebos ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Double-Blind Method ,Randomized controlled trial ,Recurrence ,law ,Internal medicine ,medicine ,Humans ,Aged ,Plants, Medicinal ,Hepatology ,medicine.diagnostic_test ,business.industry ,Gastroenterology ,Middle Aged ,medicine.disease ,Antineoplastic Agents, Phytogenic ,Polypectomy ,Intention to Treat Analysis ,030220 oncology & carcinogenesis ,Relative risk ,030211 gastroenterology & hepatology ,Safety ,Colorectal Neoplasms ,business - Abstract
Summary Background Chemoprevention of colorectal adenoma and colorectal cancer remains an important public health goal. The present study aimed to investigate the clinical potential and safety of berberine for prevention of colorectal adenoma recurrence. Methods This double-blind, randomised, placebo-controlled trial was done in seven hospital centres across six provinces in China. Individuals aged 18–75 years who had at least one but no more than six histologically confirmed colorectal adenomas that had undergone complete polypectomy within the 6 months before recruitment were recruited and randomly assigned (1:1) to receive berberine (0·3 g twice daily) or placebo tablets via block randomisation (block size of six). Participants were to undergo a first follow-up colonoscopy 1 year after enrolment, and if no colorectal adenomas were detected, a second follow-up colonoscopy at 2 years was planned. The study continued until the last enrolled participant reached the 2-year follow-up point. All participants, investigators, endoscopists, and pathologists were blinded to treatment assignment. The primary efficacy endpoint was the recurrence of adenomas at any follow-up colonoscopy. Analysis was based on modified intention-to-treat, with the full analysis set including all randomised participants who received at least one dose of study medication and who had available efficacy data. The study is registered with ClinicalTrials.gov , number NCT02226185 ; the trial has ended and this report represents the final analysis. Findings Between Nov 14, 2014, and Dec 30, 2016, 553 participants were randomly assigned to the berberine group and 555 to the placebo group. The full analysis set consisted of 429 participants in the berberine group and 462 in the placebo group. 155 (36%) participants in the berberine group and 216 (47%) in the placebo group were found to have recurrent adenoma during follow-up (unadjusted relative risk ratio for recurrence 0·77, 95% CI 0·66–0·91; p=0·001). No colorectal cancers were detected during follow-up. The most common adverse event was constipation (six [1%] of 446 patients in the berberine group vs one [ Interpretation Berberine 0·3 g twice daily was safe and effective in reducing the risk of recurrence of colorectal adenoma and could be an option for chemoprevention after polypectomy. Funding National Natural Science Foundation of China.
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- 2020
37. Urea Cycle Activation Triggered by Host–Microbiota Maladaptation Driving Colorectal Tumorigenesis
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Haoyan Chen, Tianying Tong, Shi-Yuan Lu, Gang Zhao, Baoqin Xuan, Linhua Ji, Yuqing Yan, Linhong Song, Licong Zhao, Yile Xie, Xiaoxu Leng, Xinyu Zhang, Yun Cui, Xiaoyu Chen, Hua Xiong, TaChung Yu, Xiaobo Li, Tiantian Sun, Zheng Wang, Jin-Xian Chen, Ying-Xuan Chen, Jie Hong, and Jing-Yuan Fang
- Published
- 2022
38. Radii of spherical photon orbits around Kerr-Newman black holes
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Ying-Xuan Chen, Jia-Hui Huang, and Haoxiang Jiang
- Subjects
FOS: Physical sciences ,General Relativity and Quantum Cosmology (gr-qc) ,General Relativity and Quantum Cosmology - Abstract
The spherical photon orbits around a black hole with constant radii are particular important in astrophysical observations of the black hole. In this paper, the equatorial and non-equatorial spherical photon orbits around Kerr-Newman black holes are studied. The radii of these orbits satisfy a sextic polynomial equation with three parameters, the rotation parameter $u$, charge parameter $w$ and effective inclination angle $v$. It is found that there are two polar orbits and one is inside and the other is outside the event horizon. For orbits in the equatorial plane around an extremal Kerr-Newman black hole , we find three positive solutions to the equation and provide analytical formulas for the radii of the three orbits. It is also found that a critical value of rotation parameter $u=\frac{1}{4}$ exists, above which only one retrograde orbit exists outside the event horizon and below which two orbits (one prograde and one retrograde) exist outside the event horizon. For orbits in the equatorial plane of a nonextremal Kerr-Newman black hole, there are four or two positive solutions. A critical curve in $(u,w)$-plane which separates the regions is also found. On this critical curve, the explicit formulas of three solutions are found. There always exist two equatorial photon orbits outside the event horizon in this case. For orbits between the above two special planes, there are four or two solutions to the general sextic equation. When the black hole is extremal, it is found that there is a critical inclination angle $v_{cr}$, below which only one orbit exists and above which two orbits exist outside the event horizon for a rapidly rotating black hole $u>\frac{1}{4}$. At this critical inclination angle, exact formula for the radii is also derived. Finally, a critical surface in parameter space of ($u,w,v$) is shown that separates regions with four or two solutions., references added
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- 2022
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39. On-chip CMOS Corner Detector Design for Panel Drivers
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Chua-Chin Wang, Ying-Xuan Chen, and Pang-Yen Lou
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CMOS ,Computer science ,business.industry ,Electrical engineering ,business ,Corner detector - Published
- 2021
40. Germline mutations in a DNA repair pathway are associated with familial colorectal cancer
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Yi Jiang, Ming Zhong, Haoyan Chen, Zheng Wang, Pingping Xu, Gang Zhao, Jing-Yuan Fang, Jinxian Chen, Danfeng Sun, Yaqi Gao, Qiang Liu, Ying-Xuan Chen, and Jie Hong
- Subjects
Adult ,Male ,F-Box-WD Repeat-Containing Protein 7 ,DNA Repair ,DNA repair ,DNA damage ,Adenomatous Polyposis Coli Protein ,Nonsense mutation ,Loss of Heterozygosity ,Apoptosis ,Cell cycle ,Biology ,Loss of heterozygosity ,Gene Knockout Techniques ,Young Adult ,Germline mutation ,Cell Line, Tumor ,Exome Sequencing ,Genetics ,Humans ,Genetic Predisposition to Disease ,Phosphorylation ,skin and connective tissue diseases ,Gene ,CHEK2 ,Germ-Line Mutation ,Cancer ,Aged ,Cell Proliferation ,Aged, 80 and over ,Gastroenterology ,Cell Cycle Checkpoints ,General Medicine ,DNA Repair Pathway ,Middle Aged ,Fanconi Anemia Complementation Group Proteins ,Pedigree ,DNA-Binding Proteins ,Checkpoint Kinase 2 ,Cancer research ,Female ,Tumor Suppressor Protein p53 ,Colorectal Neoplasms ,Fanconi Anemia Complementation Group N Protein ,Research Article ,DNA Damage - Abstract
Aiming to identify rare high-penetrance mutations in new genes for the underlying predisposition in familial colorectal cancer (CRC), we performed whole-exome sequencing in 24 familial CRCs. Mutations in genes that regulate DNA repair (RMI1, PALB2, FANCI) were identified that were related to the Fanconi anemia DNA repair pathway. In one pedigree, we found a nonsense mutation in CHEK2. CHEK2 played an essential role in cell cycle and DNA damage repair. Somatic mutation analysis in CHEK2 variant carriers showed mutations in TP53, APC, and FBXW7. Loss of heterozygosity was found in carcinoma of CHEK2 variant carrier, and IHC showed loss of Chk2 expression in cancer tissue. We identified a second variant in CHEK2 in 126 sporadic CRCs. A KO cellular model for CHEK2 (CHEK2KO) was generated by CRISPR/Cas9. Functional experiments demonstrated that CHEK2KO cells showed defective cell cycle arrest and apoptosis, as well as reduced p53 phosphorylation, upon DNA damage. We associated germline mutations in genes that regulate the DNA repair pathway with the development of CRC. We identified CHEK2 as a regulator of DNA damage response and perhaps as a gene involved in CRC germline predisposition. These findings link CRC predisposition to the DNA repair pathway, supporting the connection between genome integrity and cancer risk.
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- 2021
41. TRAPPC4 regulates the intracellular trafficking of PD-L1 and antitumor immunity
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Ying-Xuan Chen, Yaqi Gao, Yile Xie, Jinxian Chen, Yun Qian, Yimeng Ren, Jing-Yuan Fang, Luoyan Ai, and Ziyan Zhuang
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Cytotoxicity, Immunologic ,Endosome ,Science ,T-Lymphocytes ,Programmed Cell Death 1 Receptor ,Regulator ,Intracellular Space ,Vesicular Transport Proteins ,General Physics and Astronomy ,Cancer immunotherapy ,Nerve Tissue Proteins ,Small GTPases ,Endosomes ,Transport carrier ,General Biochemistry, Genetics and Molecular Biology ,Article ,B7-H1 Antigen ,Immunity ,PD-L1 ,Cell Line, Tumor ,Animals ,Humans ,Cytotoxicity ,Mice, Knockout ,Multidisciplinary ,biology ,Chemistry ,General Chemistry ,HCT116 Cells ,Colorectal cancer ,In vitro ,Cell biology ,Immunosurveillance ,Gene Expression Regulation, Neoplastic ,Mice, Inbred C57BL ,Protein Transport ,biology.protein ,RNA Interference ,Colorectal Neoplasms ,Intracellular ,Protein Binding - Abstract
Tumor cells evade T cell-mediated immunosurveillance via the interaction between programmed death-1 (PD-1) ligand 1 (PD-L1) on tumor cells and PD-1 on T cells. Strategies disrupting PD-1/PD-L1 have shown clinical benefits in various cancers. However, the limited response rate prompts us to investigate the molecular regulation of PD-L1. Here, we identify trafficking protein particle complex subunit 4 (TRAPPC4), a major player in vesicular trafficking, as a crucial PD-L1 regulator. TRAPPC4 interacts with PD-L1 in recycling endosomes, acting as a scaffold between PD-L1 and RAB11, and promoting RAB11-mediated recycling of PD-L1, thus replenishing its distribution on the tumor cell surface. TRAPPC4 depletion leads to a significant reduction of PD-L1 expression in vivo and in vitro. This reduction in PD-L1 facilitates T cell-mediated cytotoxicity. Overexpression of Trappc4 sensitizes tumor cells to checkpoint therapy in murine tumor models, suggesting TRAPPC4 as a therapeutic target to enhance anti-tumor immunity., Transport protein particle (TRAPP) is a multimeric protein complex regulating membrane trafficking pathways. Here the authors show that TRAPPC4, a core subunit of TRAPP complex, is required for RAB11-mediated recycling of PD-L1, affecting T-cell-mediated anti-tumor immune responses.
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- 2021
42. A novel faecal Lachnoclostridium marker for the non-invasive diagnosis of colorectal adenoma and cancer
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Tong Li, Ying-Xuan Chen, Siew C. Ng, Jing-Yuan Fang, Francis K.L. Chan, Joseph J.Y. Sung, Jessie Qiaoyi Liang, Eagle S. H. Chu, Geicho Nakatsu, Sunny H. Wong, Chun Ho Szeto, Jun Yu, and Tung On Yau
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Clostridium hathewayi ,medicine.medical_specialty ,biology ,Adenoma ,business.industry ,Colorectal cancer ,Gastroenterology ,Cancer ,Colorectal adenoma ,medicine.disease ,biology.organism_classification ,Real-time polymerase chain reaction ,Metagenomics ,Internal medicine ,medicine ,Fusobacterium nucleatum ,business - Abstract
ObjectiveThere is a need for early detection of colorectal cancer (CRC) at precancerous-stage adenoma. Here, we identified novel faecal bacterial markers for diagnosing adenoma.DesignThis study included 1012 subjects (274 CRC, 353 adenoma and 385 controls) from two independent Asian groups. Candidate markers were identified by metagenomics and validated by targeted quantitative PCR.ResultsMetagenomic analysis identified ‘m3’ from a Lachnoclostridium sp., Fusobacterium nucleatum (Fn) and Clostridium hathewayi (Ch) to be significantly enriched in adenoma. Faecal m3 and Fn were significantly increased from normal to adenoma to CRC (pm3 may perform better than Fn in distinguishing adenoma from controls (areas under the receiver operating characteristic curve (AUROCs) m3=0.675 vs Fn=0.620, p=0.09), while Fn performed better in diagnosing CRC (AUROCs Fn=0.862 vs m3=0.741, pm3 and Fn showed sensitivities of 48.3% and 33.8% for adenoma, and 62.1% and 77.8% for CRC, respectively. In a subgroup tested with faecal immunochemical test (FIT; n=642), m3 performed better than FIT in detecting adenoma (sensitivities for non-advanced and advanced adenomas of 44.2% and 50.8% by m3 (specificity=79.6%) vs 0% and 16.1% by FIT (specificity=98.5%)). Combining with FIT improved sensitivity of m3 for advanced adenoma to 56.8%. The combination of m3 with Fn, Ch, Bacteroides clarus and FIT performed best for diagnosing CRC (specificity=81.2% and sensitivity=93.8%).ConclusionThis study identifies a novel bacterial marker m3 for the non-invasive diagnosis of colorectal adenoma.
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- 2019
43. A 16q22.1 variant confers susceptibility to colorectal cancer as a distal regulator of ZFP90
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Weiping Zou, Junfang Zhang, Jinxian Chen, Dan Ma, Jie Hong, Tingting Yan, Chaoqin Shen, Haoyan Chen, Qiang Liu, Danfeng Sun, Wan Du, Ming Zhong, Fangfang Guo, Ying-Xuan Chen, Yuan-Hong Xie, Xianglong Tian, Ji-Xuan Han, Penglei Jiang, Jing-Yuan Fang, Chenyang Yu, Ye Hu, Xiaoqiang Zhu, and Jiayin Tang
- Subjects
Male ,0301 basic medicine ,Cancer Research ,Candidate gene ,Apoptosis ,Mice, SCID ,medicine.disease_cause ,Cohort Studies ,Mice ,0302 clinical medicine ,Mice, Inbred NOD ,Tumor Cells, Cultured ,Promoter Regions, Genetic ,Cancer genetics ,Mice, Knockout ,Genetics ,Cadherins ,Prognosis ,Gene Expression Regulation, Neoplastic ,Mechanisms of disease ,030220 oncology & carcinogenesis ,Bone Morphogenetic Proteins ,Colorectal Neoplasms ,Quantitative Trait Loci ,Locus (genetics) ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Antigens, CD ,Biomarkers, Tumor ,medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,Allele ,Enhancer ,Molecular Biology ,Transcription factor ,Alleles ,Cell Proliferation ,Genetic association ,NFATC Transcription Factors ,Colorectal cancer ,Xenograft Model Antitumor Assays ,Repressor Proteins ,030104 developmental biology ,Expression quantitative trait loci ,Carcinogenesis ,Chromosomes, Human, Pair 16 ,Genome-Wide Association Study - Abstract
Genome-wide association studies (GWASs) implicate 16q22.1 locus in risk for colorectal cancer (CRC). However, the underlying oncogenic mechanisms remain unknown. Here, through comprehensive filtration, we prioritized rs7198799, a common SNP in the second intron of the CDH1, as the putative causal variant. In addition, we found an association of CRC-risk allele C of rs7198799 with elevated transcript level of biological plausible candidate gene ZFP90 via expression quantitative trait loci analysis. Mechanistically, causal variant rs7198799 resides in an enhancer element and remotely regulate ZFP90 expression by targeting the transcription factor NFATC2. Remarkably, CRISPR/Cas9-guided single-nucleotide editing demonstrated the direct effect of rs7198799 on ZFP90 expression and CRC cellular malignant phenotype. Furthermore, ZFP90 affects several oncogenic pathways, including BMP4, and promotes carcinogenesis in patients and in animal models with ZFP90 specific genetic manipulation. Taken together, these findings reveal a risk SNP-mediated long-range regulation on the NFATC2-ZFP90-BMP4 pathway underlying the initiation of CRC.
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- 2019
44. Efficacy and safety of magnesium isoglycyrrhizinate injection in patients with acute drug‐induced liver injury: A phase II trial
- Author
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Jie-Ting Tang, Wei Zhong, Hong-Mei Gu, Yongfeng Wang, Haijun Zhong, Ying-Xuan Chen, Zhongshun Zhang, Chengwei Chen, Yimin Mao, Yang Yao, Zheng-Hua Wang, Mengqiu Gao, Minde Zeng, Fujian Li, Jianzhong Zhang, and Xia Zhang
- Subjects
Adult ,Male ,Drug ,China ,medicine.medical_specialty ,media_common.quotation_subject ,Magnesium isoglycyrrhizinate ,Logistic regression ,Group A ,Gastroenterology ,Group B ,Young Adult ,Double-Blind Method ,Internal medicine ,medicine ,Humans ,Stage (cooking) ,media_common ,Liver injury ,Hepatology ,business.industry ,Alanine Transaminase ,Middle Aged ,Saponins ,medicine.disease ,Triterpenes ,Logistic Models ,Liver ,Injections, Intravenous ,Tiopronin ,Female ,Chemical and Drug Induced Liver Injury ,business ,medicine.drug - Abstract
Background Drug-induced liver injury (DILI) is the most common reason for a drug to be withdrawn from the market. Apart from stopping the offending drug, no regimens are available for treating idiosyncratic DILI in clinical practice. Methods We carried out a randomized, double-blind, multidoses, active drug controlled, multicentre phase II trial to assess the safety and efficacy of the study drug, magnesium isoglycyrrhizinate (MgIG), as compared to tiopronin, a standard therapy for DILI in China. The primary outcome was the proportion of alanine aminotransferase (ALT) normalization at week 4 after study drug administration. Logistic regression was used to examine the odds of ALT normalization between low dose (Group A) and high dose (Group B) vs active control (Group C). Results One hundred and seventy-four eligible subjects were randomized and enrolled into three groups: 59 in group A, 56 in group B and 59 in group C. It was shown that group A and group B lowered ALT level even at early stage of study drug administration; when compared with Group C (61.02%), the proportions of ALT normalization at week 4 were significantly greater in Group A (84.75%, P = .0029) and Group B (85.71%, P = .0037) respectively. The results from the univariate logistic model showed that the odds of ALT normalized among subjects in Group A were about 3.6 times greater (OR = 3.55, 95% CI: 1.47-8.57, P = .0049) than subjects in Group C. Similar effect was observed among subjects in Group B (OR = 3.83, 95% CI: 1.54-9.55, P = .0039). Conclusions This trial provided preliminary evidence that MgIG is an effective and safe treatment for patients with acute DILI.
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- 2019
45. LncRNA GLCC1 promotes colorectal carcinogenesis and glucose metabolism by stabilizing c-Myc
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Qian Liang, Haoyan Chen, Chenyang Yu, Yujie Bao, Jiayin Tang, Jinxian Chen, Weiping Zou, Fangfang Guo, Xiaoqiang Zhu, Xiao-Bo Li, Xianglong Tian, Tingting Yan, Jie Hong, Ming Zhong, Xiaoyu Chen, Jing-Yuan Fang, Ying-Xuan Chen, Chaoqin Shen, Qiang Liu, Zhi-Zheng Ge, and Yun Cui
- Subjects
0301 basic medicine ,Male ,Colorectal cancer ,Carcinogenesis ,General Physics and Astronomy ,02 engineering and technology ,Kaplan-Meier Estimate ,medicine.disease_cause ,Mice ,lcsh:Science ,Regulation of gene expression ,Multidisciplinary ,Middle Aged ,021001 nanoscience & nanotechnology ,Prognosis ,Cancer metabolism ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,Female ,RNA, Long Noncoding ,0210 nano-technology ,Colorectal Neoplasms ,Glycolysis ,Science ,Carbohydrate metabolism ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Article ,Proto-Oncogene Proteins c-myc ,03 medical and health sciences ,Gastrointestinal cancer ,Downregulation and upregulation ,Cell Line, Tumor ,medicine ,Animals ,Humans ,HSP90 Heat-Shock Proteins ,Aged ,Cell Proliferation ,L-Lactate Dehydrogenase ,Cell growth ,Ubiquitination ,Cancer ,General Chemistry ,medicine.disease ,Xenograft Model Antitumor Assays ,030104 developmental biology ,Glucose ,Cancer research ,lcsh:Q - Abstract
Long non-coding RNAs (lncRNAs) contribute to colorectal cancer (CRC). However, the role of lncRNAs in CRC metabolism, especially glucose metabolism remains largely unknown. In this study, we identify a lncRNA, GLCC1, which is significantly upregulated under glucose starvation in CRC cells, supporting cell survival and proliferation by enhancing glycolysis. Mechanistically, GLCC1 stabilizes c-Myc transcriptional factor from ubiquitination by direct interaction with HSP90 chaperon and further specifies the transcriptional modification pattern on c-Myc target genes, such as LDHA, consequently reprogram glycolytic metabolism for CRC proliferation. Clinically, GLCC1 is associated with tumorigenesis, tumor size and predicts poor prognosis. Thus, GLCC1 is mechanistically, functionally, and clinically oncogenic in colorectal cancer. Targeting GLCC1 and its pathway may be meaningful for treating patients with colorectal cancer., lncRNA and cellular metabolism are frequently dysregulated in cancer. In this study, the authors discover the lncGLCC1 is increased in colorectal cancer cells under glucose starvation conditions and correlates with poor prognosis in this cancer.
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- 2019
46. Moderate alteration to gut microbiota brought by colorectal adenoma resection
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Jing-Yuan Fang, Yi-Wen Qiu, Si-Yi Yu, Yuan-Hong Xie, and Ying-Xuan Chen
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Male ,medicine.medical_specialty ,Time Factors ,Adenoma ,Colorectal cancer ,Colonic Polyps ,Colorectal adenoma ,Gut flora ,Ribotyping ,Risk Assessment ,Gastroenterology ,Adenomatous Polyps ,Feces ,03 medical and health sciences ,0302 clinical medicine ,Predictive Value of Tests ,Risk Factors ,Internal medicine ,medicine ,Humans ,Prospective Studies ,Prospective cohort study ,Colectomy ,Aged ,Bacteria ,Hepatology ,biology ,business.industry ,Ruminococcus ,Colonoscopy ,Middle Aged ,medicine.disease ,Parabacteroides ,biology.organism_classification ,Gastrointestinal Microbiome ,stomatognathic diseases ,Treatment Outcome ,030220 oncology & carcinogenesis ,Dysbiosis ,Female ,030211 gastroenterology & hepatology ,Neoplasm Recurrence, Local ,Colorectal Neoplasms ,business - Abstract
BACKGROUND AND AIM: Microbial dysbiosis is involved in the development of colorectal cancer and its most common precancerous lesion, colorectal adenoma. Endoscopic resection is one of the procedures for primary prevention of colorectal cancer, yet little is known about how the endoscopic therapy influences gut microbiota. METHODS We conducted a prospective study of 20 patients who underwent endoscopic resection of colorectal adenoma and analyzed the fecal microbiota before and 3 months after adenoma resection. MiSeq sequencing of 16S rRNA genes was performed to determine the alterations in microbial diversity and structure. To discriminate the microbiota of the two groups, random forest and receiver operating characteristic analysis were applied, and a genus-based microbiota signature was obtained. RESULTS Despite few alterations in overall microbial structure after adenoma resection, the abundance of Parabacteroides revealed a significant increase postoperatively (3.8% vs 1.5%, 0.1160), and the microbiota signature of Parabacteroides, Streptococcus, and Ruminococcus showed an optimal discriminating performance of postoperative status with the area under the curve 0.788, P
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- 2019
47. Fecal Signatures of Streptococcus anginosus and Streptococcus constellatus for Noninvasive Screening and Early Warning of Gastric Cancer
- Author
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Cheng-Bei Zhou, Si-Yuan Pan, Peng Jin, Jia-Wen Deng, Jin-Hui Xue, Xin-Yue Ma, Yuan-Hong Xie, Hui Cao, Qiang Liu, Wei-Fen Xie, Xiao-Ping Zou, Jian-Qiu Sheng, Bang-Mao Wang, Hong Wang, Jian-Lin Ren, Si-De Liu, Yun-Wei Sun, Xiang-Jun Meng, Gang Zhao, Jin-Xian Chen, Yun Cui, Pei-Qin Wang, Hui-Min Guo, Lang Yang, Xin Chen, Jia Ding, Xiao-Ning Yang, Xin-Ke Wang, Ai-Hua Qian, Li-Dan Hou, Zheng Wang, Ying-Xuan Chen, and Jing-Yuan Fang
- Subjects
Feces ,Hepatology ,Stomach Neoplasms ,Streptococcus anginosus ,Gastroenterology ,Humans ,Streptococcus constellatus ,Early Detection of Cancer - Abstract
Most patients with gastric cancer (GCa) are diagnosed at an advanced stage. We aimed to investigate novel fecal signatures for clinical application in early diagnosis of GCa.This was an observational study that included 1043 patients from 10 hospitals in China. In the discovery cohort, 16S ribosomal RNA gene analysis was performed in paired samples (tissues and feces) from patients with GCa and chronic gastritis (ChG) to determine differential abundant microbes. Their relative abundances were detected using quantitative real-time polymerase chain reaction to test them as bacterial candidates in the training cohort. Their diagnostic efficacy was validated in the validation cohort.Significant enrichments of Streptococcus anginosus (Sa) and Streptococcus constellatus (Sc) in GCa tumor tissues (P.05) and feces (P.0001) were observed in patients with intraepithelial neoplasia, early and advanced GCa. Either the signature parallel test Sa∪Sc or single signature Sa/Sc demonstrated superior sensitivity (Sa: 75.6% vs 72.1%, P.05; Sc: 84.4% vs 64.0%, P.001; and Sa∪Sc: 91.1% vs 81.4%, P.01) in detecting early GCa compared with advanced GCa (specificity: Sa: 84.0% vs 83.9%, Sc: 70.4% vs 82.3%, and Sa∪Sc: 64.0% vs 73.4%). Fecal signature Sa∪Sc outperformed Sa∪CEA/Sc∪CEA in the discrimination of advanced GCa (sensitivity: 81.4% vs 74.2% and 81.4% vs 72.3%, P.01; specificity: 73.4% vs 81.0 % and 73.4% vs 81.0%). The performance of Sa∪Sc in the diagnosis of both early and advanced GCa was verified in the validation cohort.Fecal Sa and Sc are noninvasive, accurate, and sensitive signatures for early warning in GCa. (ClinicalTrials.gov, Number: NCT04638959).
- Published
- 2022
48. Influence of the microbiota on epigenetics in colorectal cancer
- Author
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Dan-Feng Sun, Ying-Xuan Chen, and Jing-Yuan Fang
- Subjects
Host genome ,Colorectal cancer ,short-chain fatty acids ,colorectal cancer ,02 engineering and technology ,Review ,Gut flora ,010402 general chemistry ,01 natural sciences ,Gene expression ,medicine ,Epigenetics ,Cancer death ,Special Topic: Chemistry and Molecular Medicine ,Genetics ,Multidisciplinary ,biology ,gut microbiota ,epigenetics ,Molecular Biology & Genetics ,021001 nanoscience & nanotechnology ,biology.organism_classification ,medicine.disease ,0104 chemical sciences ,Gene sequence ,0210 nano-technology - Abstract
Colorectal cancer is one of the most common malignancies and is the second leading cause of cancer death worldwide. Generally, there are three categories of colorectal cancer development mechanism—genetic, epigenetic and aberrant immunological signaling pathways—all of which may be initiated by an imbalanced gut microbiota. Epigenetic modifications enable host cells to change gene expression without modifying the gene sequence. The microbiota can interact with the host genome dynamically through the interface presented by epigenetic modifications. In particular, bacterially derived short-chain fatty acids have been identified as one clear link in the interaction of the microbiota with host epigenetic pathways. This review discusses recent findings relating to the cross talk between the microbiota and epigenetic modifications in colorectal cancer.
- Published
- 2018
49. Case report of isolated gastric IgG4-related lesion and series of literature review
- Author
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Ying-Xuan Chen, Juan Tan, Tian-Hui Zou, Xiang-Xi Ye, Zheng Wang, and Qin-Yan Gao
- Subjects
Lesion ,Pathology ,medicine.medical_specialty ,Series (mathematics) ,business.industry ,parasitic diseases ,Medicine ,medicine.symptom ,business - Abstract
IgG4-related disease (IgG4-RD) is an immune-mediated fibroinflammatory disease that responds to glucocorticoids, which is gradually well known in recent years. It can involve multiple organs of patients, including pancreas, bile duct, gallbladder, salivary gland, orbital tissue, lung, liver, lacrimal gland, kidney, retroperitoneal, aorta, thyroid and lymph node, [1] in which gastrointestinal involvement is relatively rare [2]. Most of the known reports of isolated gastric IgG4-related lesions were accidental found (in physical examination or other site examination), and often treated as Gastrointestinal Stromal Tumors (GIST) lead to surgically resection. In addition, Calcified Fibrous Tumor (CFT) in gastrointestinal tract often occurs with submucosa [3] is histologically similar to IgG4-RD, [4] whether it belongs to IgG4-RD is still controversial.
- Published
- 2021
50. Fecal Enterotoxigenic Bacteroides fragilis–Peptostreptococcus stomatis–Parvimonas micra Biomarker for Noninvasive Diagnosis and Prognosis of Colorectal Laterally Spreading Tumor
- Author
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Xiaoyu Chen, Qin-Yan Gao, Jia Qi Li, Ying-Xuan Chen, Xiaobo Li, Yao Zhang, Jialu Li, Xiaonan Shen, Jing-Yuan Fang, and Yun Cui
- Subjects
0301 basic medicine ,Cancer Research ,medicine.medical_specialty ,Adenoma ,Colorectal cancer ,medicine.medical_treatment ,enterotoxigenic Bacteroides fragilis ,Colorectal adenoma ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Parvimonas micra ,noninvasive biomarker ,Medicine ,Clinical significance ,RC254-282 ,Colectomy ,Peptostreptococcus stomatis ,biology ,diagnosis and prognosis ,business.industry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,biology.organism_classification ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Biomarker (medicine) ,laterally spreading tumor ,Bacteroides fragilis ,business - Abstract
ObjectiveUp to now, non-invasive diagnosis of laterally spreading tumor (LST) and prediction of adenoma recurrence after endoscopic resection of LSTs is inevitable. This study aimed to identify a microbial signature with clinical significance of diagnosing LSTs and predicting adenoma recurrence after LSTs colectomy.MethodsWe performed 16S rRNA sequencing in 24 mucosal samples, including 5 healthy controls (HC), 8 colorectal adenoma (CRA) patients, and 11 LST patients. The differentiating microbiota in fecal samples was quantified by qPCR in 475 cases with 113 HC, 208 CRA patients, 109 LST patients, and 45 colorectal cancer (CRC) patients. We identified differentially abundant taxa among cases and controls using linear discriminant analysis effect size analysis. ROC curve was used to evaluate diagnostic values of the bacterial candidates. Pairwise comparison of AUCs was performed by using the Delong’s test. The Mantel-Haenszel hazard models were performed to determine the effects of microbial compositions on recurrence free survival.ResultsThe microbial dysbiosis of LST was characterized by relative high abundance of the genus Lactobacillus-Streptococcus and the species enterotoxigenic Bacteroides fragilis (ETBF)–Peptostreptococcus stomatis (P. stomatis)–Parvimonas micra (P. micra). The abundance of ETBF, P. stomatis, and P. micra were steadily increasing in LST and CRC groups. P. stomatis behaved stronger value on diagnosing LST than the other two bacteria (AUC 0.887, 95% CI 0.842–0.931). The combination of P. stomatis, P. micra, and ETBF (AUC 0.922, 95% CI 0.887–0.958) revealed strongest diagnostic power with 88.7% sensitivity and 81.4% specificity. ETBF, P. stomatis, and P. micra were associated with malignant LST (PP.stomatis = 0.0015, PP.micra = 0.0255, PETBF = 0.0169) and the abundance of IL-6. The high abundance of P. stomatis was related to the adenoma recurrence after LST resection (HR = 3.88, P = 0.008).ConclusionsFecal microbiome signature (ETBF–P. stomatis–P. micra) can diagnose LSTs with high accuracy. ETBF, P. stomatis, and P. micra were related to malignant LST and P. stomatis exhibited high predictive value on the adenoma recurrence after resection of LSTs. The fecal microbiome signature of LST may provide a noninvasive alternative to early detect LST and predict the adenoma recurrence risk after resections of LSTs.
- Published
- 2021
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