92 results on '"Ying‐Nan Wang"'
Search Results
2. The lncRNA XIST/miR‐125b‐2‐3p axis modulates cell proliferation and chemotherapeutic sensitivity via targeting Wee1 in colorectal cancer
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Zhao‐lei Zeng, Jia‐huan Lu, Yun Wang, Hui Sheng, Ying‐nan Wang, Zhan‐hong Chen, Qi‐nian Wu, Jia‐Bo Zheng, Yan‐xing Chen, Dong‐dong Yang, Kai Yu, Hai‐yu Mo, Jia‐jia Hu, Pei‐shan Hu, Ze‐xian Liu, Huai‐qiang Ju, and Rui‐Hua Xu
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chemotherapeutic sensitivity ,colorectal cancer ,drug resistance ,miR‐125b‐2‐3p ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Numerous reports on microRNAs have illustrated their role in tumor growth and metastasis. Recently, a new prognostic factor, miR‐125b‐2‐3p, has been identified for predicting chemotherapeutic sensitivity in advanced colorectal cancer (CRC). However, the specific mechanisms and biological functions of miR‐125b‐2‐3p in advanced CRC under chemotherapy have yet to be elucidated. Methods MiR‐125b‐2‐3p expression was detected by real‐time PCR (RT‐PCR) in CRC tissues. The effects of miR‐125b‐2‐3p on the growth, metastasis, and drug sensitivity of CRC cells were tested in vitro and in vivo. Based on multiple databases, the upstream competitive endogenous RNAs (ceRNAs) and the downstream genes for miR‐125b‐2‐3p were predicted by bioinformatic analysis, followed by the experiments including luciferase reporter assays, western blot assays, and so on. Results MiR‐125b‐2‐3p was significantly lowly expressed in the tissues and cell lines of CRC. Higher expression of miR‐125b‐2‐3p was associated with relatively lower proliferation rates and fewer metastases. Moreover, overexpressed miR‐125b‐2‐3p remarkably improved chemotherapeutic sensitivity of CRC in vivo and in vitro. Mechanistically, miR‐125b‐2‐3p was absorbed by long noncoding RNA (lncRNA) XIST regulating WEE1 G2 checkpoint kinase (WEE1) expression. The upregulation of miR‐125b‐2‐3p inhibited the proliferation and epithelial‐mesenchymal transition (EMT) of CRC induced by lncRNA XIST. Conclusions Lower miR‐125b‐2‐3p expression resulted in lower sensitivity of CRC to chemotherapy and was correlated with poorer survival of CRC patients. LncRNA XIST promoted CRC metastasis acting as a ceRNA for miR‐125b‐2‐3p to mediate WEE1 expression. LncRNA XIST‐miR‐125b‐2‐3p‐WEE1 axis not only regulated CRC growth and metastasis but also contributed to chemotherapeutic resistance to CRC.
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- 2021
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3. Germline mutational profile of Chinese patients under 70 years old with colorectal cancer
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Teng‐Jia Jiang, Fang Wang, Ying‐Nan Wang, Jia‐Jia Hu, Pei‐Rong Ding, Jun‐Zhong Lin, Zhi‐Zhong Pan, Gong Chen, Jian‐Yong Shao, Rui‐hua Xu, Qi Zhao, and Feng Wang
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colorectal cancer ,genetic testing ,germline mutation ,hereditary CRC syndromes ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Inherited susceptibility accounts for nearly one‐third of colorectal cancer (CRC) predispositions and has an 80%‐100% lifetime risk of this disease. However, there are few data about germline mutations of hereditary CRC‐related genes in Chinese patients with CRC. This study aimed to assess the prevalence of gene mutations related to cancer susceptibility among Chinese patients with CRC, differences between Chinese and Western patients, and the phenotype‐genotype correlation. Methods We retrospectively collected tumor samples from 526 patients with CRC under 70 years old who underwent hereditary CRC genetic testing. A series of bioinformatic analyses, as well as statistical comparisons, were performed. Results We found that 77 patients (14.6%) harbored functional variants of the 12 genes. The mutation frequencies of the top 5 mutated genes were 6.5% for MutL homolog 1 (MLH1), 5.1% for MutS homolog 2 (MSH2), 1.0% for MSH6, 0.8% for PMS1 homolog 2 (PMS2), and 0.8% for APC regulator of the WNT signaling pathway (APC). Our data showed much higher rates of mutations of MSH6 and PMS2 genes among all mismatch repair (MMR) genes as compared with those in Western populations. Mutations in MLH1, MSH2, and MSH6 were found to be mutually exclusive. Patients with MLH1 or MSH2 mutations had higher frequencies of personal history of cancer (MLH1: 20.6% vs. 8.7%; MSH2: 25.9% vs. 8.6%) and family history of cancer than those without these mutations (MLH1: 73.5% vs. 48.4%; MSH2: 70.4% vs. 48.9%), and the lesions were more prone to occur on the right side of the colon than on the left side (MLH1: 73.5% vs. 29.3%; MSH2: 56.0% vs. 31.0%). The proportion of stage I/II disease was higher in patients with MLH1 mutations than in those without MLH1 mutations (70.6% vs. 50.7%), and the rate of polyps was higher in patients with APC mutations than in those with wild‐type APC (75.0% vs. 17.4%). Conclusion These results provide a full‐scale landscape of hereditary susceptibility over 12 related genes in CRC patients and suggest that a comprehensive multi‐gene panel testing for hereditary CRC predisposition could be a helpful analysis in clinical practice.
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- 2020
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4. Clinical characteristics of novel coronavirus cases in tertiary hospitals in Hubei Province
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Kui Liu, Yuan-Yuan Fang, Yan Deng, Wei Liu, Mei-Fang Wang, Jing-Ping Ma, Wei Xiao, Ying-Nan Wang, Min-Hua Zhong, Cheng-Hong Li, Guang-Cai Li, Hui-Guo Liu, Xiu-Yuan Hao, and Pei-Fang Wei
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Medicine - Abstract
Abstract. Background. The 2019 novel coronavirus (2019-nCoV) causing an outbreak of pneumonia in Wuhan, Hubei province of China was isolated in January 2020. This study aims to investigate its epidemiologic history, and analyze the clinical characteristics, treatment regimens, and prognosis of patients infected with 2019-nCoV during this outbreak. Methods. Clinical data from 137 2019-nCoV-infected patients admitted to the respiratory departments of nine tertiary hospitals in Hubei province from December 30, 2019 to January 24, 2020 were retrospectively collected, including general status, clinical manifestations, laboratory test results, imaging characteristics, and treatment regimens. Results. None of the 137 patients (61 males, 76 females, aged 20–83 years, median age 57 years) had a definite history of exposure to Huanan Seafood Wholesale Market. Major initial symptoms included fever (112/137, 81.8%), coughing (66/137, 48.2%), and muscle pain or fatigue (44/137, 32.1%), with other, less typical initial symptoms observed at low frequency, including heart palpitations, diarrhea, and headache. Nearly 80% of the patients had normal or decreased white blood cell counts, and 72.3% (99/137) had lymphocytopenia. Lung involvement was present in all cases, with most chest computed tomography scans showing lesions in multiple lung lobes, some of which were dense; ground-glass opacity co-existed with consolidation shadows or cord-like shadows. Given the lack of effective drugs, treatment focused on symptomatic and respiratory support. Immunoglobulin G was delivered to some critically ill patients according to their conditions. Systemic corticosteroid treatment did not show significant benefits. Notably, early respiratory support facilitated disease recovery and improved prognosis. The risk of death was primarily associated with age, underlying chronic diseases, and median interval from the appearance of initial symptoms to dyspnea. Conclusions. The majority of patients with 2019-nCoV pneumonia present with fever as the first symptom, and most of them still showed typical manifestations of viral pneumonia on chest imaging. Middle-aged and elderly patients with underlying comorbidities are susceptible to respiratory failure and may have a poorer prognosis.
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- 2020
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5. LncRNA LINRIS stabilizes IGF2BP2 and promotes the aerobic glycolysis in colorectal cancer
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Yun Wang, Jia-Huan Lu, Qi-Nian Wu, Ying Jin, De-Shen Wang, Yan-Xing Chen, Jia Liu, Xiao-Jing Luo, Qi Meng, Heng-Ying Pu, Ying-Nan Wang, Pei-Shan Hu, Ze-Xian Liu, Zhao-Lei Zeng, Qi Zhao, Rong Deng, Xiao-Feng Zhu, Huai-Qiang Ju, and Rui-Hua Xu
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Autophagy ,CRC ,IGF2BP2 ,LINRIS ,MYC ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Long noncoding RNAs (lncRNAs) play nonnegligible roles in the epigenetic regulation of cancer cells. This study aimed to identify a specific lncRNA that promotes the colorectal cancer (CRC) progression and could be a potential therapeutic target. Methods We screened highly expressed lncRNAs in human CRC samples compared with their matched adjacent normal tissues. The proteins that interact with LINRIS (Long Intergenic Noncoding RNA for IGF2BP2 Stability) were confirmed by RNA pull-down and RNA immunoprecipitation (RIP) assays. The proliferation and metabolic alteration of CRC cells with LINRIS inhibited were tested in vitro and in vivo. Results LINRIS was upregulated in CRC tissues from patients with poor overall survival (OS), and LINRIS inhibition led to the impaired CRC cell line growth. Moreover, knockdown of LINRIS resulted in a decreased level of insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2), a newly found N6-methyladenosine (m6A) ‘reader’. LINRIS blocked K139 ubiquitination of IGF2BP2, maintaining its stability. This process prevented the degradation of IGF2BP2 through the autophagy-lysosome pathway (ALP). Therefore, knockdown of LINRIS attenuated the downstream effects of IGF2BP2, especially MYC-mediated glycolysis in CRC cells. In addition, the transcription of LINRIS could be inhibited by GATA3 in CRC cells. In vivo experiments showed that the inhibition of LINRIS suppressed the proliferation of tumors in orthotopic models and in patient-derived xenograft (PDX) models. Conclusion LINRIS is an independent prognostic biomarker for CRC. The LINRIS-IGF2BP2-MYC axis promotes the progression of CRC and is a promising therapeutic target.
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- 2019
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6. Alteration in TET1 as potential biomarker for immune checkpoint blockade in multiple cancers
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Hao-Xiang Wu, Yan-Xing Chen, Zi-Xian Wang, Qi Zhao, Ming-Ming He, Ying-Nan Wang, Feng Wang, and Rui-Hua Xu
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Biomarker ,DNA methylation ,Immune checkpoint blockade ,Pan-cancer ,TET1 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Immune checkpoint inhibitors (ICIs) have achieved impressive success in different cancer types, yet responses vary and predictive biomarkers are urgently needed. Growing evidence points to a link between DNA methylation and anti-tumor immunity, while clinical data on the association of genomic alterations in DNA methylation-related genes and ICI response are lacking. Methods Clinical cohorts with annotated response and survival data and matched mutational data from published studies were collected and consolidated. The predictive function of specific mutated genes was first tested in the discovery cohort and later validated in the validation cohort. The association between specific mutated genes and tumor immunogenicity and anti-tumor immunity was further investigated in the Cancer Genome Altas (TCGA) dataset. Results Among twenty-one key genes involving in the regulation of DNA methylation, TET1-mutant (TET1-MUT) was enriched in patients responding to ICI treatment in the discovery cohort (P 0.05 in both two non-ICI-treated cohorts). In TCGA dataset, TET1-MUT was strongly associated with higher tumor mutational burden and neoantigen load, and inflamed pattern of tumor-infiltrating T lymphocytes, immune signatures and immune-related gene expressions. Conclusions TET1-MUT was strongly associated with higher ORR, better DCB, longer PFS, and improved OS in patients receiving ICI treatment, suggesting that TET1-MUT is a novel predictive biomarker for immune checkpoint blockade across multiple cancer types.
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- 2019
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7. Systematic analysis of the transcriptome in small‐cell carcinoma of the oesophagus reveals its immune microenvironment
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Qi Zhao, Yan‐Xing Chen, Qi‐Nian Wu, Chao Zhang, Min Liu, Ying‐Nan Wang, Yan‐Fen Feng, Jia‐Jia Hu, Jian‐Hua Fu, Hong Yang, Jing‐Jing Qi, Zi‐Xian Wang, Yun‐Xin Lu, Hui Sheng, Ze‐Xian Liu, Zhi‐Xiang Zuo, Jian Zheng, Jing‐Ping Yun, Jin‐Xin Bei, Wei‐Hua Jia, Dong‐Xin Lin, Rui‐hua Xu, and Feng Wang
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immune microenvironment ,immunotherapy ,small‐cell carcinoma of the oesophagus ,transcriptome analysis ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Objectives Although the genomic landscape of small‐cell carcinoma of the oesophagus (SCCE) has been dissected, its transcriptome‐level aberration and immune microenvironment status are unknown. Methods Using ultra‐deep whole transcriptome sequencing, we analysed the expression profile of nine paired SCCE samples and compared the transcriptome with public transcriptomic data set of normal oesophageal mucosa and other cancer types. Based on the transcriptome data, the immune signatures were investigated. The genomic data of 55 SCCE samples were also applied for immune checkpoint blockade therapy (ICBT) biomarker evaluation including microsatellite instability (MSI) status, tumor mutation burden (TMB) and neoantigen burden (TNB). Also, we evaluated the CD8, CD68 and programmed death‐ligand 1 (PD‐L1) in 62 retrospective SCCE samples with IHC assay. Results Differential expression analysis revealed that the cell cycle, p53, and Wnt pathways are significantly deregulated in SCCE. Immune microenvironment analysis showed that high leucocyte infiltration and adaptive immune resistance did occur in certain individuals, while the majority showed a relatively suppressive immune status. Immune checkpoints such as CD276 and LAG‐3 were upregulated, and higher M2 macrophage infiltration in tumor tissues. Furthermore, normal tissues adjacent to the tumors of SCCE presented a more activated inflammatory status than tumor‐free healthy controls. These observations showed that ICBT might benefit SCCE patients. As the critical biomarker of ICBT, TMB of SCCE was 3.64 with the predictive objective response rate 13.2%, while the PD‐L1‐positive rate was 43%. Conclusions Our study systematically characterized the immune microenvironment in small‐cell carcinoma of the esophagus and provided evidence that several patients with SCCE may benefit from immune checkpoint blockade therapy.
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- 2020
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8. Targeting the cholesterol-RORα/γ axis inhibits colorectal cancer progression through degrading c-myc
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Ying-Nan Wang, Dan-Yun Ruan, Zi-Xian Wang, Kai Yu, Dai-Lin Rong, Ze-Xian Liu, Feng Wang, Jia-Jia Hu, Ying Jin, Qi-Nian Wu, Heng-Ying Pu, Min Wang, Rui-Hua Xu, and Zhao-Lei Zeng
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Cancer Research ,Cholesterol ,Atorvastatin ,Genetics ,Humans ,Ligands ,Colorectal Neoplasms ,Molecular Biology ,Cell Proliferation - Abstract
Dysregulated cholesterol metabolism is a hallmark of colorectal cancer (CRC). However, the usage of cholesterol-lowering agents seemed to have no benefit in CRC patients. In this study, we focused on the cholesterol-nuclear receptors (NRs) axis as a strategy. Cholesterol and its derivatives work as ligands for different nuclear receptors, thus promoting cancer progression. The key NR downstream of cholesterol in CRC is unknown. Here, we treated CRC cells with a cholesterol-lowering agent and lipoprotein-depleted conditioned medium, and then detected the change of the putative NRs. The results revealed that RORα/γ (Retinoic acid receptor-related Orphan Receptor α/γ) levels exhibited the most obvious increases in CRC cells subjected them to cholesterol deprivation. RORα/γ agonists significantly inhibited CRC cells proliferation and migration in vitro and in vivo. Also, RORα/γ overexpression repressed CRC cells proliferation and migration in vitro and in vivo and RORα/γ knockdown promoted it. Mechanistically, RORα/γ agonists promoted c-myc degradation by activating the transcription of the ubiquitinase NEDD4. Intriguingly, the combination of RORα/γ agonists and atorvastatin had a synergistic effect on inhibiting CRC cells. These findings demonstrate that the cholesterol- RORα/γ axis is important for maintaining c-myc protein levels. Combination therapy with atorvastatin and RORα/γ agonist is a promising therapeutic strategy for CRC.
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- 2022
9. Elevated peripheral blood neutrophil-to-lymphocyte ratio is associated with an immunosuppressive tumour microenvironment and decreased benefit of PD-1 antibody in advanced gastric cancer
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Xiao-Li Wei, Shu-Qiang Yuan, Dan-Yun Ruan, Fenghua Wang, Rui-Hua Xu, Zi-Xian Wang, Yan-Xing Chen, Hao-Xiang Wu, and Ying-Nan Wang
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biology ,business.industry ,Gastroenterology ,Original Articles ,Advanced gastric cancer ,Peripheral blood ,neutrophil-to-lymphocyte ratio ,Immunology ,biology.protein ,Medicine ,Neutrophil to lymphocyte ratio ,Antibody ,business ,tumour microenvironment ,advanced gastric cancer ,anti-PD-1 monoclonal antibody ,AcademicSubjects/MED00260 - Abstract
Background Due to its limited efficacy and potential toxicity, anti-PD-1 monoclonal antibody is not suitable for all advanced gastric cancer (AGC) patients and predictive biomarkers identifying patients who can benefit from it are urgently needed. This study aimed to evaluate the predictive and prognostic value of inflammatory markers in the context of the systemic inflammatory status and tumour microenvironment. Methods The study included 58 patients from a prospective study investigating the safety and efficacy of toripalimab in chemorefractory AGC patients. Patient characteristics, treatment outcomes, and haematological parameters were analysed. Immune-cell infiltration and gene expression in tumour tissue were examined using transcriptome sequencing. Results In this cohort, the median follow-up time was 4.5 months, the median progression-free survival was 1.9 months, and the median overall survival (OS) was 4.8 months. The objective response rate was 12.1% and th disease control rate (DCR) was 39.7%. Both the baseline blood neutrophil-to-lymphocyte ratio (bNLR) with a cut-point of 2.7 and the early elevated dynamic change of the bNLR (dNLR) with a cut-point of 1.5 were prognostic factors of survival. Patients in the high bNLR or dNLR group had remarkably poor DCR (25.8% vs 59.1%, P = 0.023; 15.8% vs 54.6%, P = 0.008). In multivariate analysis, bNLR and tumour mutational burden were independent prognostic factors of OS. Tumour RNA-seq analysis revealed enriched neutrophil infiltration and a higher tumour NLR in the bNLR-high group. Corresponding tumour gene-expression profiles were associated with neutrophil recruitment and inflammatory cytokine aggregation. Conclusions Our study demonstrated the potential clinical utility of NLR as a biomarker for patient selection and clinical management in predicting the prognosis of AGC patients as well as response to anti-PD-1 therapy. In addition, high bNLR reflected the imbalance of tumour-tissue-infiltrating neutrophils and lymphocytes, and was associated with an immunosuppressive and pro-tumour microenvironment.
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- 2021
10. FTO downregulation mediated by hypoxia facilitates colorectal cancer metastasis
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Kai Yu, Qi Zhao, Qi Meng, Rui-Hua Xu, Yang Li, Long Bai, Zexian Liu, Ting Li, Huai-Qiang Ju, Junzhong Lin, Min Wang, Dan-Yun Ruan, De Shen Wang, Xiang-Yuan Wu, Li-Zhi Luo, Ying-Nan Wang, and Jin-Fei Lin
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0301 basic medicine ,Cancer Research ,Adenosine ,medicine.medical_treatment ,Down-Regulation ,Protein degradation ,Biology ,Article ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Genetics ,medicine ,Humans ,Molecular Biology ,Annexin A2 ,Messenger RNA ,Kinase ,Growth factor ,nutritional and metabolic diseases ,RNA-Binding Proteins ,medicine.disease ,Colorectal cancer ,Ubiquitin ligase ,030104 developmental biology ,Tumor progression ,030220 oncology & carcinogenesis ,biology.protein ,Cancer research ,Epigenetics ,Colorectal Neoplasms - Abstract
Fat mass and obesity-associated protein (FTO), an N6-methyladenosine (m6A) demethylase, participates in tumor progression and metastasis in many malignancies, but its role in colorectal cancer (CRC) is still unclear. Here, we found that FTO protein levels, but not RNA levels, were downregulated in CRC tissues. Reduced FTO protein expression was correlated with a high recurrence rate and poor prognosis in resectable CRC patients. Moreover, we demonstrated that hypoxia restrained FTO protein expression, mainly due to an increase in ubiquitin-mediated protein degradation. The serine/threonine kinase receptor associated protein (STRAP) might served as the E3 ligase and K216 was the major ubiquitination site responsible for hypoxia-induced FTO degradation. FTO inhibited CRC metastasis both in vitro and in vivo. Mechanistically, FTO exerted a tumor suppressive role by inhibiting metastasis-associated protein 1 (MTA1) expression in an m6A-dependent manner. Methylated MTA1 transcripts were recognized by an m6A “reader”, insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2), which then stabilized its mRNA. Together, our findings highlight the critical role of FTO in CRC metastasis and reveal a novel epigenetic mechanism by which the hypoxic tumor microenvironment promotes CRC metastasis.
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- 2021
11. Lethal and sublethal effects of fluxametamide on rice-boring pest, rice stem borer Chilo suppressalis
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Yao Li, Ying Nan Wang, Cheng Long Qian, Tao Tang, Ning Shen, Zhao Jun Han, and Chun Qing Zhao
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Fluxametamide is a novel isoxazoline insecticide and has been registered in Korea and Japan to control Lepidoptera pests. Rice stem borer, Chilo suppressalis (Walker), is a destructive Lepidoptera pest of rice in China, and novel effectively insecticides are required to be developed for controlling it due to its increasing resistance levels. Therefore, the lethal and sublethal effects of fluxametamide on C. suppressalis were investigated in the present study. In the lethal assay, the insecticidal activity of fluxametamide with median lethal dose (LD50) value of 1.308 mg/kg to the 4th instar larvae of C. suppressalis was higher than that of chlorantraniliprole (LD50, 3.112 mg/kg) and lower than that of emamectin benzoate (LD50, 0.006 mg/kg). In addition, the 3rd instar larvae of C. suppressalis were sensitive to fluxametamide than the 4th instar larvae. In the sublethal (LD10 and LD30) assay, the duration of 3rd to 6th instar larvae was significantly increased, whereas the pupal duration, pupation rate, and life-cycle rate were also significantly increased in F0 generation. Both length and weight of ovarian tube were decreased with the increase of fluxametamide dose, and they in the LD30 treatment were significantly lower than those of the control group. In F1 generation, only the duration of eggs was significantly increased with LD30 treatment of fluxametamide, other developmental parameters has no significant change. These results suggest that fluxametamide has excellent lethal and sublethal effects on C. suppressalis and probably is able to suppress the population growth and progeny of C. suppressalis.
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- 2022
12. The lncRNA XIST/miR‐125b‐2‐3p axis modulates cell proliferation and chemotherapeutic sensitivity via targeting Wee1 in colorectal cancer
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Yan-Xing Chen, Huai-Qiang Ju, Zhan-Hong Chen, Jia-jia Hu, Rui-Hua Xu, Ying-Nan Wang, Jia-huan Lu, Hui Sheng, Yun Wang, Kai Yu, Pei-Shan Hu, Zexian Liu, Jia-Bo Zheng, Hai-Yu Mo, Qi-Nian Wu, Dong-dong Yang, and Zhao-Lei Zeng
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Male ,Cancer Research ,Epithelial-Mesenchymal Transition ,Colorectal cancer ,Mice, Nude ,Antineoplastic Agents ,Cell Cycle Proteins ,colorectal cancer ,Biology ,chemotherapeutic sensitivity ,Real-Time Polymerase Chain Reaction ,lcsh:RC254-282 ,Metastasis ,Mice ,Cell Line, Tumor ,microRNA ,medicine ,Animals ,Humans ,Radiology, Nuclear Medicine and imaging ,Neoplasm Metastasis ,Tumor Stem Cell Assay ,Aged ,Cell Proliferation ,Original Research ,Cancer Biology ,Mice, Inbred BALB C ,miR‐125b‐2‐3p ,drug resistance ,Competing endogenous RNA ,Cell growth ,Middle Aged ,Protein-Tyrosine Kinases ,HCT116 Cells ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Long non-coding RNA ,digestive system diseases ,Up-Regulation ,MicroRNAs ,Wee1 ,Oncology ,Drug Resistance, Neoplasm ,Cancer research ,biology.protein ,Female ,RNA, Long Noncoding ,XIST ,Colorectal Neoplasms - Abstract
Background Numerous reports on microRNAs have illustrated their role in tumor growth and metastasis. Recently, a new prognostic factor, miR‐125b‐2‐3p, has been identified for predicting chemotherapeutic sensitivity in advanced colorectal cancer (CRC). However, the specific mechanisms and biological functions of miR‐125b‐2‐3p in advanced CRC under chemotherapy have yet to be elucidated. Methods MiR‐125b‐2‐3p expression was detected by real‐time PCR (RT‐PCR) in CRC tissues. The effects of miR‐125b‐2‐3p on the growth, metastasis, and drug sensitivity of CRC cells were tested in vitro and in vivo. Based on multiple databases, the upstream competitive endogenous RNAs (ceRNAs) and the downstream genes for miR‐125b‐2‐3p were predicted by bioinformatic analysis, followed by the experiments including luciferase reporter assays, western blot assays, and so on. Results MiR‐125b‐2‐3p was significantly lowly expressed in the tissues and cell lines of CRC. Higher expression of miR‐125b‐2‐3p was associated with relatively lower proliferation rates and fewer metastases. Moreover, overexpressed miR‐125b‐2‐3p remarkably improved chemotherapeutic sensitivity of CRC in vivo and in vitro. Mechanistically, miR‐125b‐2‐3p was absorbed by long noncoding RNA (lncRNA) XIST regulating WEE1 G2 checkpoint kinase (WEE1) expression. The upregulation of miR‐125b‐2‐3p inhibited the proliferation and epithelial‐mesenchymal transition (EMT) of CRC induced by lncRNA XIST. Conclusions Lower miR‐125b‐2‐3p expression resulted in lower sensitivity of CRC to chemotherapy and was correlated with poorer survival of CRC patients. LncRNA XIST promoted CRC metastasis acting as a ceRNA for miR‐125b‐2‐3p to mediate WEE1 expression. LncRNA XIST‐miR‐125b‐2‐3p‐WEE1 axis not only regulated CRC growth and metastasis but also contributed to chemotherapeutic resistance to CRC., Low expression of miR‐125b‐2‐3p in CRC was linked to lower chemotherapeutic sensitivity and poor survival. The lncRNA XIST promoted CRC invasion and migration by functioning as a ceRNA for miR‐125b‐2‐3p to mediate WEE1 expression. Our findings suggest that the lncRNA XIST‐miR‐125b‐2‐3p‐WEE1 axis not only regulated CRC growth and metastasis but also contributed to chemotherapeutic resistance to CRC, which may shed light on their targeted applications.
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- 2021
13. Mechanical properties and reinforcement effect of jointed rock mass with pre-stressed bolt
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Wendong Yang, Xian-xian Lü, Guangyu Luo, Wang Xuepeng, Ying-nan Wang, Bo Chunjie, and Ling Wang
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Materials science ,0211 other engineering and technologies ,Metals and Alloys ,General Engineering ,Uniaxial compression ,Anchoring ,02 engineering and technology ,Slip (materials science) ,Numerical models ,Compressive strength ,Geotechnical engineering ,Reinforcement ,Rock mass classification ,Elastic modulus ,021101 geological & geomatics engineering ,021102 mining & metallurgy - Abstract
Pre-stressed bolt anchorage is the key technology for jointed rock masses in rock tunnelling, slope treatment and mining engineering. To investigate the mechanical properties and reinforcement effect of jointed rock masses with pre-stressed bolts, in this study, uniaxial compression tests were conducted on specimens with different anchoring types and flaw inclination angles. ABAQUS software was used to verify and supplement the laboratory tests. The laws of the uniaxial compressive strength (UCS) obtained from the numerical simulations and laboratory tests were consistent. The results showed that under the same flaw angle, both the UCS and elastic modulus of the bolted specimens were improved compared with those of the specimens without bolts and the improvements increased with an increase in the bolt pre-stress. Under the same anchoring type, the UCS and elastic modulus of the jointed specimens increased with an increase in the flaw angle. The pre-stressed bolt could not only restrain the slip of the specimens along the flaw surface but also change the propagation mode of the secondary cracks and limit the initiation of cracks. In addition, the plot contours of the maximum principal strain and the Tresca stress of the numerical models were influenced by the anchoring type, flaw angle, anchoring angle and bolt position.
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- 2020
14. Germline mutational profile of Chinese patients under 70 years old with colorectal cancer
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Zhizhong Pan, Pei-Rong Ding, Rui-Hua Xu, Ying-Nan Wang, Fang Wang, Qi Zhao, Gong Chen, Teng-Jia Jiang, Junzhong Lin, Jian Yong Shao, Jia-jia Hu, and Feng Wang
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Male ,0301 basic medicine ,Oncology ,China ,congenital, hereditary, and neonatal diseases and abnormalities ,Cancer Research ,medicine.medical_specialty ,Colorectal cancer ,colorectal cancer ,Gene mutation ,MLH1 ,lcsh:RC254-282 ,hereditary CRC syndromes ,genetic testing ,03 medical and health sciences ,0302 clinical medicine ,Germline mutation ,Internal medicine ,medicine ,PMS2 ,Humans ,neoplasms ,Germ-Line Mutation ,Aged ,Retrospective Studies ,business.industry ,nutritional and metabolic diseases ,Cancer ,Original Articles ,Middle Aged ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,digestive system diseases ,DNA-Binding Proteins ,MSH6 ,Germ Cells ,MutS Homolog 2 Protein ,030104 developmental biology ,germline mutation ,MSH2 ,030220 oncology & carcinogenesis ,Original Article ,Female ,Colorectal Neoplasms ,MutL Protein Homolog 1 ,business - Abstract
Background Inherited susceptibility accounts for nearly one‐third of colorectal cancer (CRC) predispositions and has an 80%‐100% lifetime risk of this disease. However, there are few data about germline mutations of hereditary CRC‐related genes in Chinese patients with CRC. This study aimed to assess the prevalence of gene mutations related to cancer susceptibility among Chinese patients with CRC, differences between Chinese and Western patients, and the phenotype‐genotype correlation. Methods We retrospectively collected tumor samples from 526 patients with CRC under 70 years old who underwent hereditary CRC genetic testing. A series of bioinformatic analyses, as well as statistical comparisons, were performed. Results We found that 77 patients (14.6%) harbored functional variants of the 12 genes. The mutation frequencies of the top 5 mutated genes were 6.5% for MutL homolog 1 (MLH1), 5.1% for MutS homolog 2 (MSH2), 1.0% for MSH6, 0.8% for PMS1 homolog 2 (PMS2), and 0.8% for APC regulator of the WNT signaling pathway (APC). Our data showed much higher rates of mutations of MSH6 and PMS2 genes among all mismatch repair (MMR) genes as compared with those in Western populations. Mutations in MLH1, MSH2, and MSH6 were found to be mutually exclusive. Patients with MLH1 or MSH2 mutations had higher frequencies of personal history of cancer (MLH1: 20.6% vs. 8.7%; MSH2: 25.9% vs. 8.6%) and family history of cancer than those without these mutations (MLH1: 73.5% vs. 48.4%; MSH2: 70.4% vs. 48.9%), and the lesions were more prone to occur on the right side of the colon than on the left side (MLH1: 73.5% vs. 29.3%; MSH2: 56.0% vs. 31.0%). The proportion of stage I/II disease was higher in patients with MLH1 mutations than in those without MLH1 mutations (70.6% vs. 50.7%), and the rate of polyps was higher in patients with APC mutations than in those with wild‐type APC (75.0% vs. 17.4%). Conclusion These results provide a full‐scale landscape of hereditary susceptibility over 12 related genes in CRC patients and suggest that a comprehensive multi‐gene panel testing for hereditary CRC predisposition could be a helpful analysis in clinical practice.
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- 2020
15. Time-dependent behaviour of clay-concrete interfaces with different contact surface roughnesses under shear loading
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Wendong Yang, Ying-nan Wang, Jingjing Guo, and Ling Wang
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Materials science ,Mechanical Engineering ,General Chemical Engineering ,Aerospace Engineering ,02 engineering and technology ,Shear modulus ,020303 mechanical engineering & transports ,0203 mechanical engineering ,Shear (geology) ,Creep ,Solid mechanics ,Cohesion (geology) ,General Materials Science ,Bearing capacity ,Direct shear test ,Composite material ,Pile - Abstract
Mechanical properties of the interface between a pile and soil greatly affect the bearing capacity of a pile. The creep of soil causes a long-term strength of the pile–soil interface to be smaller than its instantaneous shear strength. It is helpful to understand the settlement deformation and strength characteristics of friction piles from the micromechanism by studying the shear creep mechanical properties of the clay–concrete interface. In this work, we carry out shear creep tests on the interfaces between clay and concrete slabs with different roughnesses under different normal stresses. We analyze the influence of the joint roughness coefficient (JRC) on the long-term cohesion and long-term friction angle of the interface. We propose an instantaneous damage factor of the shear modulus and improve the Nishihara creep model with the instantaneous damage effect of the shear modulus. The experimental results show: (1) the whole process test curve of the shear creep shows that the specimen is rapidly destroyed after the transient creep stage and the steady-state creep stage, but the tertiary creep stage is not obvious. (2) The long-term shear strength of the clay-concrete interface is greatly affected by the change in the normal stress under the same JRC conditions, and the long-term shear strength of the interface increases linearly with increasing normal stress. (3) The relationship between the long-term shear strength and normal stress of the interface can be described by the Mohr–Coulomb failure criterion, and the long-term cohesion and long-term friction angle under different JRC conditions can be calculated accordingly. There exists a critical value JRCcr for the long-term cohesion, and the long-term cohesion of the interface first increases and then decreases as the JRC increases. When the long-term cohesion of the interface decreases to a certain extent, it fluctuates around the long-term cohesion value of clay. Moreover, the long-term friction angle of the interface fluctuates slightly with varying JRC, and there is no obvious change rule. (4) Considering the instantaneous damage of the shear modulus, we establish a relationship between the instantaneous shear modulus and the damage factor and introduce the damage factor into the Nishihara creep model. The shear creep mechanical parameters of the clay–concrete specimens under multistage loading are inversed.
- Published
- 2020
16. Inhibition of fatty acid catabolism augments the efficacy of oxaliplatin-based chemotherapy in gastrointestinal cancers
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Jia-huan Lu, De Shen Wang, Zexian Liu, Huai-Qiang Ju, Yun-Xin Lu, Zhao-Lei Zeng, Ming-Ming He, Hong-En Yu, Qi Zhao, Yan-Xing Chen, Qi-Nian Wu, Zhan-Hong Chen, Yun Wang, Feng Wang, Ying-Nan Wang, Rui-Hua Xu, Jia Liu, and Hui Sheng
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0301 basic medicine ,Cancer Research ,Carcinogenesis ,Colorectal cancer ,medicine.medical_treatment ,Perhexiline ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Stomach Neoplasms ,Cell Line, Tumor ,Antineoplastic Combined Chemotherapy Protocols ,Animals ,Humans ,Medicine ,Gastrointestinal cancer ,Chemotherapy ,Carnitine O-Palmitoyltransferase ,NFATC Transcription Factors ,business.industry ,Catabolism ,Fatty Acids ,Drug Synergism ,medicine.disease ,Xenograft Model Antitumor Assays ,Up-Regulation ,Oxaliplatin ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Oncology ,Apoptosis ,030220 oncology & carcinogenesis ,Cancer research ,Female ,Colorectal Neoplasms ,Reactive Oxygen Species ,business ,NADP ,medicine.drug - Abstract
Gastrointestinal cancer causes countless deaths every year due to therapeutic resistance. However, whether metabolic alterations contribute to chemoresistance is not well understood. In this study, we report that fatty acid (FA) catabolism was activated in gastrointestinal cancer cells treated with oxaliplatin, which exhibited higher expression of the rate-limiting enzymes carnitine palmitoyltransferase 1B (CPT1B) and CPT2. The clinical analysis also showed that high expression of these enzymes was associated with poor oxaliplatin-based chemotherapy outcomes in patients. Furthermore, genetic or pharmacological inhibition of CPT2 with perhexiline disturbed NADPH and redox homeostasis and increased reactive oxygen species (ROS) generation and cell apoptosis in gastrointestinal cancer cells following oxaliplatin treatment. Specifically, the combination of oxaliplatin and perhexiline significantly suppressed the progression of gastrointestinal cancer in cell-based xenograft and patient-derived xenograft (PDX) models. Mechanistically, CPT2 was transcriptionally upregulated by nuclear factor of activated T cells 3 (NFATc3), which translocated to the nucleus in response to oxaliplatin treatment. In summary, our study suggests that the inhibition of CPT-mediated FA catabolism combined with conventional chemotherapy is a promising therapeutic strategy for patients with gastrointestinal cancers.
- Published
- 2020
17. LncRNA LINRIS stabilizes IGF2BP2 and promotes the aerobic glycolysis in colorectal cancer
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Rong Deng, Ying Nan Wang, Yan Xing Chen, Xiao Feng Zhu, Pei Shan Hu, Heng Ying Pu, Xiao Jing Luo, Zexian Liu, Huai-Qiang Ju, De Shen Wang, Rui-Hua Xu, Qi Meng, Qi Nian Wu, Yun Wang, Zhao Lei Zeng, Qi Zhao, Ying Jin, Jia Huan Lu, and Jia Liu
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0301 basic medicine ,Cancer Research ,Transcription, Genetic ,RNA Stability ,LINRIS ,GATA3 Transcription Factor ,MYC ,Biology ,Models, Biological ,lcsh:RC254-282 ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Transcription (biology) ,Cell Line, Tumor ,Biomarkers, Tumor ,Autophagy ,Animals ,Humans ,Gene knockdown ,IGF2BP2 ,Gene Expression Profiling ,Research ,GATA3 ,RNA-Binding Proteins ,RNA ,Prognosis ,Non-coding RNA ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,CRC ,Gene Expression Regulation, Neoplastic ,Glucose ,030104 developmental biology ,Oncology ,Anaerobic glycolysis ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,Molecular Medicine ,Female ,RNA Interference ,RNA, Long Noncoding ,Colorectal Neoplasms ,Glycolysis - Abstract
BackgroundLong noncoding RNAs (lncRNAs) play nonnegligible roles in the epigenetic regulation of cancer cells. This study aimed to identify a specific lncRNA that promotes the colorectal cancer (CRC) progression and could be a potential therapeutic target.MethodsWe screened highly expressed lncRNAs in human CRC samples compared with their matched adjacent normal tissues. The proteins that interact withLINRIS(Long Intergenic Noncoding RNA for IGF2BP2 Stability) were confirmed by RNA pull-down and RNA immunoprecipitation (RIP) assays. The proliferation and metabolic alteration of CRC cells withLINRISinhibited were tested in vitro and in vivo.ResultsLINRISwas upregulated in CRC tissues from patients with poor overall survival (OS), andLINRISinhibition led to the impaired CRC cell line growth. Moreover, knockdown ofLINRISresulted in a decreased level of insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2), a newly found N6-methyladenosine (m6A) ‘reader’.LINRISblocked K139 ubiquitination of IGF2BP2, maintaining its stability. This process prevented the degradation of IGF2BP2 through the autophagy-lysosome pathway (ALP). Therefore, knockdown ofLINRISattenuated the downstream effects of IGF2BP2, especially MYC-mediated glycolysis in CRC cells. In addition, the transcription ofLINRIScould be inhibited by GATA3 in CRC cells. In vivo experiments showed that the inhibition ofLINRISsuppressed the proliferation of tumors in orthotopic models and in patient-derived xenograft (PDX) models.ConclusionLINRISis an independent prognostic biomarker for CRC. TheLINRIS-IGF2BP2-MYC axis promotes the progression of CRC and is a promising therapeutic target.
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- 2019
18. Fall preventive gait trajectory planning of a lower limb rehabilitation exoskeleton based on capture point theory
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Zhang-yi Ma, Qianxiao Wei, Wang Hansong, Zhao Yibing, Wei Yang, Canjun Yang, Ying-nan Wang, and Mei-ying Deng
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0209 industrial biotechnology ,Computer Networks and Communications ,Computer science ,05 social sciences ,Process (computing) ,02 engineering and technology ,Exoskeleton ,Center of gravity ,020901 industrial engineering & automation ,Gait (human) ,Hardware and Architecture ,Control theory ,0502 economics and business ,Signal Processing ,Trajectory ,Point (geometry) ,Electrical and Electronic Engineering ,050203 business & management ,Zero moment point ,Balance (ability) - Abstract
We study the balance problem caused by forward leaning of the wearer’s upper body during rehabilitation training with a lower limb rehabilitation exoskeleton. The instantaneous capture point is obtained by modeling the human-exoskeleton system and using the capture point theory. By comparing the stability region with instantaneous capture points of different gait phases, the balancing characteristics of different gait phases and changes to the equilibrium state in the gait process are analyzed. Based on a model of the human-exoskeleton system and the condition of balance of different phases, a trajectory correction strategy is proposed for the instability of the human-exoskeleton system caused by forward leaning of the wearer’s upper body. Finally, the reliability of the trajectory correction strategy is verified by carrying out experiments on the Zhejiang University Lower Extremity Exoskeleton. The proposed trajectory correction strategy can respond to forward leaning of the upper body in a timely manner. Additionally, in the process of the center of gravity transferred from a double-support phase to a single-support phase, the ratio of gait cycle to zero moment point transfer is reduced correspondingly, and the gait stability is improved.
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- 2019
19. AMPKα1 confers survival advantage of colorectal cancer cells under metabolic stress by promoting redox balance through the regulation of glutathione reductase phosphorylation
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Jian Xiong Feng, Zexian Liu, Dan Xie, Chao Zhang, Jia Jia Hu, Gong Chen, Huai-Qiang Ju, Yun Xin Lu, Marcia A. Ogasawara, Ying qin Li, Yang Chen, Ying Nan Wang, Qi Zhao, Jin Ping Yun, Zhizhong Pan, Hui Chang Bi, Feng Tian, Kai Yan Liu, Ying Jin, Zhao Lei Zeng, Song Gao, Yi Ming Jiang, Scott Kopetz, Feng Wang, Jie Liu, Rui-Hua Xu, Wei Hua Jia, and Hui Sheng
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Male ,Threonine ,0301 basic medicine ,Cancer Research ,Carcinogenesis ,Colorectal cancer ,Glutathione reductase ,Apoptosis ,Kaplan-Meier Estimate ,AMP-Activated Protein Kinases ,medicine.disease_cause ,Mice ,chemistry.chemical_compound ,0302 clinical medicine ,Antineoplastic Combined Chemotherapy Protocols ,Phosphorylation ,RNA, Small Interfering ,Drug Synergism ,Middle Aged ,Cancer metabolism ,Oxaliplatin ,Survival Rate ,Glutathione Reductase ,Gene Knockdown Techniques ,030220 oncology & carcinogenesis ,Female ,Colorectal Neoplasms ,Oxidation-Reduction ,medicine.drug ,Cell Survival ,Biology ,Article ,03 medical and health sciences ,Stress, Physiological ,Cell Line, Tumor ,Genetics ,medicine ,Animals ,Humans ,Molecular Biology ,Survival rate ,Aged ,Neoplasm Staging ,Glutathione ,medicine.disease ,Xenograft Model Antitumor Assays ,030104 developmental biology ,chemistry ,Cancer research ,Reactive Oxygen Species ,Homeostasis - Abstract
Patients with stage II or III colorectal cancer (CRC) exhibit various clinical outcomes after radical treatments. The 5-year survival rate was between 50 and 87%. However, the underlying mechanisms of the variation remain unclear. Here we show that AMPKα1 is overexpressed in CRC patient specimens and the high expression is correlated with poor patient survival. We further reveal a previously unrecognized function of AMPKα1, which maintains high level of reduced glutathione to keep reduction–oxidation reaction (redox) homeostasis under stress conditions, thus promoting CRC cell survival under metabolic stress in vitro and enhancing tumorigenesis in vivo. Mechanistically, AMPKα1 regulate the glutathione reductase (GSR) phosphorylation possibly through residue Thr507 which enhances its activity. Suppression of AMPKα1 by using nano-sized polymeric vector induces a favorable therapeutic effect, especially when in combination with oxaliplatin. Our study uncovers a novel function of AMPKα1 in redox regulation and identifies a promising therapeutic strategy for treatment of CRC.
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- 2019
20. Chemotherapy With or Without Anti-EGFR Agents in Left- and Right-Sided Metastatic Colorectal Cancer: An Updated Meta-Analysis
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Feng Wang, Pei-Rong Ding, Ying-Nan Wang, Yu Hong Li, Gong Chen, Rui-Hua Xu, Zi-Xian Wang, Dan Xie, Hao-Xiang Wu, Ming-Ming He, and Huiyan Luo
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Oncology ,medicine.medical_specialty ,Colorectal cancer ,medicine.medical_treatment ,Cetuximab ,Antineoplastic Agents ,law.invention ,Drug Therapy ,Randomized controlled trial ,law ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Humans ,Panitumumab ,Neoplasm Metastasis ,Proportional Hazards Models ,Chemotherapy ,business.industry ,Proportional hazards model ,Hazard ratio ,Antibodies, Monoclonal ,Odds ratio ,medicine.disease ,ErbB Receptors ,Mutation ,Colorectal Neoplasms ,business ,medicine.drug - Abstract
Background:Previous meta-analyses have suggested primary tumor location as a predictive factor for efficacy of anti–epidermal growth factor receptor (EGFR) therapies in patients with metastatic colorectal cancer (mCRC). However, the recent phase III TAILOR trial addressing this issue was not included in those analyses. This meta-analysis incorporated data from the TAILOR trial to evaluate the efficacy of chemotherapy plus anti-EGFR agents (cetuximab [Cet] or panitumumab [Pani]) versus chemotherapy alone forRASwild-type (wt) right- and left-sided mCRC.Patients and Methods:A PubMed-based literature search was conducted to identify randomized controlled trials (RCTs) studying the additional efficacy of Cet/Pani in combination with chemotherapy versus chemotherapy alone inRASwt left- and right-sided mCRC. Study-level pooled analyses of hazard ratios (HRs) for overall survival (OS) and progression-free survival (PFS) and odds ratios (ORs) for objective response rate (ORR) were performed.Results:Three first-line RCTs (CRYSTAL, PRIME, and TAILOR) and one second-line RCT (20050181) were included. Significant OS benefits from Cet/Pani were observed in the left-sided (HR, 0.76; 95% CI, 0.66–0.86) but not right-sided subgroups (HR, 0.99; 95% CI, 0.78–1.27). However, the addition of Cet/Pani to chemotherapy significantly improved PFS and ORR in both the left-sided (HR, 0.70; 95% CI, 0.57–0.86, and OR, 3.28; 95% CI, 1.95–5.51, respectively) and right-sided subgroups (HR, 0.76; 95% CI, 0.59–0.99, and OR, 1.78; 95% CI, 1.08–2.93, respectively).Conclusions:The addition of Cet/Pani to chemotherapy significantly benefits PFS and ORR in patients withRASwt right-sided mCRC, indicating that anti-EGFR therapies may remain an option for selected patients.
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- 2019
21. Abstract P1-16-07: Progression-free survival is a surrogate of survival in maintenance therapy for metastatic breast cancer: Randomized trial level analysis
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Erwei Song, Yunfang Yu, Ying-Nan Wang, Q Ou, and Herui Yao
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Surrogate endpoint ,Hazard ratio ,Cancer ,medicine.disease ,Metastatic breast cancer ,law.invention ,Breast cancer ,Randomized controlled trial ,Maintenance therapy ,law ,Internal medicine ,medicine ,Progression-free survival ,business - Abstract
Background:The validity of progression-free survival (PFS) as a surrogate end point for overall survival (OS) in maintenance therapy trials of metastatic breast cancer (MBC) is uncertain. We aimed to compare treatment effect sizes and the strength of associations between OS and PFS in trials of maintenance therapy for MBC. Methods: We searched for randomized trials investigating maintenance chemotherapy, endocrine therapy or immunotherapy after first-line chemotherapy in MBC and selected those reporting results for both OS and PFS. Treatment effect size differences between OS and PFS by a ratio of hazard ratios (rHRs) with 95% confidence intervals [CIs] were evaluated using random effects analysis. Surrogacy were analyzed using a weighted linear regression model, correlations were evaluated by squared correlation R2. Results: We analyzed data from 16 trials and 3,898 patients that received maintenance chemotherapy, endocrine therapy or immunotherapy for MBC. In the all trial-level analysis, treatment effect sizes were 28% greater for PFS than for OS (combined rHR, 0.72; 95% CI, 0.62 to 0.85, P < 0.001), and the correlation coefficient R2 between PFS and OS was 18% (95% CI, 12% to 26%). Differences were greater with PFS than OS for trials of maintenance chemotherapy compared with observation (rHR, 0.72; 95% CI, 0.59 to 0.80, P < 0.001), and the correlation coefficient R2between treatment effects on PFS and on OS ranged from 12% (95% CI, 8% to 16%) when all trials were considered to 40% (95%CI, 30% to 54%) after exclusion of one highly influential trial by sensitivity analysis. Differences were also great for trials of maintenance endocrine therapy vs. observation (rHR, 0.54; 95% CI, 0.44 to 0.66), and immunotherapy vs. observation (rHR, 0.85; 95% CI, 0.80 to 0.91). Conclusion: PFS was greater than OS in the treatment effect sizes, which is a valid surrogate end point for OS to assess treatment effect in MBC maintenance therapy trials. PROSPERO registry: No. CRD42017071858; Support: ChiCTR-IIR-17014036, SYS-C-201801. Citation Format: Song E, Yao H, Yu Y, Ou Q, Wang Y. Progression-free survival is a surrogate of survival in maintenance therapy for metastatic breast cancer: Randomized trial level analysis [abstract]. In: Proceedings of the 2018 San Antonio Breast Cancer Symposium; 2018 Dec 4-8; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2019;79(4 Suppl):Abstract nr P1-16-07.
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- 2019
22. Comprehensive profiling of 1015 patients' exomes reveals genomic-clinical associations in colorectal cancer
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Qi Zhao, Feng Wang, Yan-Xing Chen, Shifu Chen, Yi-Chen Yao, Zhao-Lei Zeng, Teng-Jia Jiang, Ying-Nan Wang, Chen-Yi Wu, Ying Jing, You-Sheng Huang, Jing Zhang, Zi-Xian Wang, Ming-Ming He, Heng-Ying Pu, Zong-Jiong Mai, Qi-Nian Wu, Renwen Long, Xiaoni Zhang, Tanxiao Huang, Mingyan Xu, Miao-Zheng Qiu, Hui-Yan Luo, Yu-Hong Li, Dong-Shen Zhang, Wei-Hua Jia, Gong Chen, Pei-Rong Ding, Li-Ren Li, Zheng-Hai Lu, Zhi-Zhong Pan, and Rui-Hua Xu
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Multidisciplinary ,Chromosomal Instability ,Exome Sequencing ,General Physics and Astronomy ,Humans ,Kinesins ,Exome ,General Chemistry ,Genomics ,Colorectal Neoplasms ,General Biochemistry, Genetics and Molecular Biology - Abstract
The genetic basis of colorectal cancer (CRC) and its clinical associations remain poorly understood due to limited samples or targeted genes in current studies. Here, we perform ultradeep whole-exome sequencing on 1015 patients with CRC as part of the ChangKang Project. We identify 46 high-confident significantly mutated genes, 8 of which mutate in 14.9% of patients: LYST, DAPK1, CR2, KIF16B, NPIPB15, SYTL2, ZNF91, and KIAA0586. With an unsupervised clustering algorithm, we propose a subtyping strategy that classisfies CRC patients into four genomic subtypes with distinct clinical characteristics, including hypermutated, chromosome instability with high risk, chromosome instability with low risk, and genome stability. Analysis of immunogenicity uncover the association of immunogenicity reduction with genomic subtypes and poor prognosis in CRC. Moreover, we find that mitochondrial DNA copy number is an independent factor for predicting the survival outcome of CRCs. Overall, our results provide CRC-related molecular features for clinical practice and a valuable resource for translational research.
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- 2021
23. Photoclinic
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Hang Ruan, Jian Zhu, and Ying-Nan Wang
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General Medicine - Published
- 2021
24. IDDF2020-ABS-0179 Cholesterol-Rorα/Γ axis promotes colorectal cancer progression through c-myc stabilization
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Zhao-Lei Zeng, Dan-Yun Ruan, Kai Yu, Ying-Nan Wang, and Zi-Xian Wang
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Agonist ,Cholesterol ,medicine.drug_class ,Cell growth ,Atorvastatin ,Retinoic acid ,digestive system diseases ,chemistry.chemical_compound ,chemistry ,Nuclear receptor ,Cell culture ,medicine ,Cancer research ,lipids (amino acids, peptides, and proteins) ,Receptor ,medicine.drug - Abstract
Background Cholesterol is essential for colorectal cancer (CRC) cells. Cholesterol and its derivates are ligands for different nuclear receptors (NRs). However, which NR plays a key role in the downstream of cholesterol in CRC is unknown. This study aimed to elucidate the cholesterol-NRs axis in CRC. Methods We detected the levels of putative nuclear receptors of cholesterol metabolism in CRC cells treated with cholesterol deprivation. Then we built the RORα/γ knockdown and overexpression cell lines and examined the roles of RORα/γ in cell proliferation and migration of CRC in vitro and in vivo. Subsequently, we explored the downstream mechanisms and investigated the efficacy of the combination of Atorvastatin and RORα/γ agonists in mice. Results We found that the retinoic acid receptor-related orphan receptors RORα/γ levels increased most obviously in CRC cells after treated with cholesterol deprivation. RORα/γ can promote CRC cell proliferation and migration in vitro and in vivo. Mechanically, RORα/γ promotes c-myc degradation through activating ubiquitinase NEDD4 transcription. The combination of Atorvastatin and RORα/γ agonist SR1078 synergistically inhibited CRC cell growth and metastasis. Conclusions These findings demonstrate that cholesterol is essential for sustaining c-myc levels in CRC cells. The inhibition of RORα/γ by cholesterol and its derivatives is important for c-myc protein levels. And the combination of Atorvastatin and RORα/γ agonist might represent a therapeutic strategy in CRC.
- Published
- 2020
25. Low-Dose 4-Hydroxy-2-Nonenal (HNE) Reperfusion Therapy Displays Cardioprotective Effects in Mice After Myocardial Infarction That Are Abrogated by Genipin
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Shu Qin, Shiyong Wu, Lei Gao, and Ying-Nan Wang
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Male ,0301 basic medicine ,medicine.medical_specialty ,Myocardial Infarction ,Ischemia ,Apoptosis ,Myocardial Reperfusion ,Myocardial Reperfusion Injury ,030204 cardiovascular system & hematology ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Reperfusion therapy ,Lab/In Vitro Research ,Internal medicine ,Animals ,Uncoupling Protein 3 ,Medicine ,Iridoids ,Myocardial infarction ,UCP3 ,Mice, Knockout ,Aldehydes ,biology ,business.industry ,Myocardium ,Cytochrome c ,Heart ,General Medicine ,medicine.disease ,Coronary Vessels ,Mice, Inbred C57BL ,Blot ,030104 developmental biology ,Endocrinology ,chemistry ,Cardiovascular Diseases ,Reperfusion Injury ,Genipin ,biology.protein ,business - Abstract
BACKGROUND Revascularization is a successful therapeutic strategy for myocardial infarction. However, restoring coronary blood flow can lead to ischemia-reperfusion (I/R) injury. Low-dose 4-hydroxy-2-nonenal (HNE) therapy appears to play a key role in myocardial tolerance to I/R injury. We hypothesized that the positive effects of HNE on myocardial I/R injury may be UCP3-dependent. MATERIAL AND METHODS Adult male wild-type (WT) or UCP3 knockout (UCP3-/-) mice were pre-treated with the UCP inhibitor genipin or saline 1 h before ischemia and underwent 30-min coronary artery ligation followed by 24-h reperfusion. Mice were treated with intravenous HNE (4 mg/kg) or saline 5 min before reperfusion. Echocardiography was conducted to measure left ventricular end-diastolic posterior wall thickness (LVPWd), end-diastolic diameter (LVEDD), and fractional shortening (FS). Infarct size was measured by TTC staining. qRT-PCR and Western blotting were used to assess the expression of UCP3, UCP2, and the apoptosis markers cytochrome C and cleaved caspase-3. RESULTS HNE improved survival at 24 h post-MI in wild-type mice (p
- Published
- 2018
26. p53-dependent CD51 expression contributes to characteristics of cancer stem cells in prostate cancer
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Clifford W. Mason, Bin Zhang, Congya Zhou, Qing Zhu, Yuan Qiu, Yutian Shen, Suxia Han, Chenchen He, Yiping Dong, Li Chen, Hongyu Li, Jianye Cai, Yang Zhao, Ying-Nan Wang, Yinong Huang, Yuanyuan Zhang, Xin Sui, Yanan Zhang, Hao-Xiang Wu, and J. Xiao
- Subjects
Male ,0301 basic medicine ,Cancer Research ,Transcription, Genetic ,Immunology ,Tumor initiation ,Malignancy ,urologic and male genital diseases ,Article ,Metastasis ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Prostate cancer ,Cancer stem cell ,Prostate ,medicine ,Humans ,lcsh:QH573-671 ,Loss function ,Aged ,Regulation of gene expression ,business.industry ,lcsh:Cytology ,Prostatic Neoplasms ,Cell Biology ,Integrin alphaV ,Middle Aged ,medicine.disease ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,Neoplastic Stem Cells ,Cancer research ,Tumor Suppressor Protein p53 ,business - Abstract
Abstract Castration-resistant prostate cancer (CRPC), which is considered to contain cancer stem cells (CSCs), leads to a high relapse rate in patients with prostate cancer (PCa). However, the markers of prostate CSCs are controversial. Here we demonstrate that CD51, in part, correlates with the poor prognosis of PCa patients. Further, we find that CD51 is a functional molecule that is able to promote the malignancy of PCa through enhancing tumor initiation, metastatic potential, and chemoresistance. Moreover, we find that elevated CD51 expression in PCa specimens correlates with p53 loss of function. Mechanistically, we demonstrate that p53 acts via Sp1/3 to repress CD51 transcription, and CD51 is required for PCa stemness and metastasis properties, and is downregulated by p53. Taken together, these results indicate that CD51 is a novel functional marker for PCa, which may provide a therapeutic target for the efficiently restricting PCa progression.
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- 2018
27. Pharmacological Ascorbate Suppresses Growth of Gastric Cancer Cells with GLUT1 Overexpression and Enhances the Efficacy of Oxaliplatin Through Redox Modulation
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Rui-Hua Xu, Le Zong Chen, Yun Wang, Hui Sheng, De Shen Wang, Jia Huan Lu, Ying Nan Wang, Feng Wang, Yun Xin Lu, Yu Hong Li, Chao Ren, Feng Hua Wang, Zi Xian Wang, Zhao Lei Zeng, Qi Nian Wu, Huai-Qiang Ju, Hai Yu Mo, Ya Chen, and Dong Liang Chen
- Subjects
0301 basic medicine ,endocrine system ,pharmacological ascorbate ,Medicine (miscellaneous) ,Ascorbic Acid ,chemotherapy ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,Stomach Neoplasms ,Cell Line, Tumor ,medicine ,Humans ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,reactive oxygen species ,Gene knockdown ,Chemistry ,Cell growth ,gastric cancer ,Cancer ,medicine.disease ,Ascorbic acid ,Oxaliplatin ,carbohydrates (lipids) ,030104 developmental biology ,Apoptosis ,Cell culture ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,Oxidation-Reduction ,GLUT1 ,Oxidative stress ,Research Paper - Abstract
Rationale: The antitumor activity of high-dose ascorbate has been re-evaluated recently, but the mechanism underlying cell-specific sensitivity to ascorbate has not yet been clarified. Methods: The effects of high-dose ascorbate on gastric cancer were assessed using cancer cell lines with high and low expression of GLUT1 via flow cytometry and colony formation assays in vitro and patient-derived xenografts in vivo. Results: In this study, we demonstrated that gastric cancer cells with high GLUT1 expression were more sensitive to ascorbate treatment than cells with low GLUT1 expression. GLUT1 knockdown significantly reversed the therapeutic effects of pharmacological ascorbate, while enforced expression of GLUT1 enhanced the sensitivity to ascorbate treatment. The efficacy of pharmacological ascorbate administration in mice bearing cell line-based and patient-derived xenografts was influenced by GLUT1 protein levels. Mechanistically, ascorbate depleted intracellular glutathione, generated oxidative stress and induced DNA damage. The combination of pharmacological ascorbate with genotoxic agents, including oxaliplatin and irinotecan, synergistically inhibited gastric tumor growth in mouse models. Conclusions: The current study showed that GLUT1 expression was inversely correlated with sensitivity of gastric cancer cells to pharmacological ascorbate and suggested that GLUT1 expression in gastric cancer may serve as a marker for sensitivity to pharmacological ascorbate.
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- 2018
28. Ginsenoside Rh2 and Rg3 inhibit cell proliferation and induce apoptosis by increasing mitochondrial reactive oxygen species in human leukemia Jurkat cells
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Li‑Mei Wu, Ying‑Nan Wang, Chuan‑Xin Zhou, Xiang‑Long Zhang, Jian‑Pei Fang, Yong Liu, Jia‑Hui Yao, Ting Xia, Min Wang, and Qian‑Hong Zeng
- Subjects
0301 basic medicine ,Mitochondrial ROS ,Cancer Research ,Ginsenosides ,Cell Survival ,proliferation ,Cell ,Gene Expression ,acute lymphoblastic leukemia ,Mitochondrion ,Biology ,Biochemistry ,Jurkat cells ,Jurkat Cells ,ginsenoside Rh2 ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,medicine ,Humans ,Viability assay ,Molecular Biology ,Cell Proliferation ,reactive oxygen species ,chemistry.chemical_classification ,Reactive oxygen species ,Cell growth ,apoptosis ,Articles ,Matrix Metalloproteinases ,Mitochondria ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,ginsenoside Rg3 ,Oncology ,chemistry ,Apoptosis ,030220 oncology & carcinogenesis ,Molecular Medicine ,Apoptosis Regulatory Proteins - Abstract
Ginsenoside Rh2 (GRh2) and ginsenoside Rg3 (GRg3) are primary bioactive components in Panax ginseng. The present study aimed to investigate the underlying mechanisms of apoptotic cell-death induced by GRh2 and GRg3 in human leukemia Jurkat cells. The Cell Counting kit-8 assay was used to determine cell proliferation. Apoptosis was detected by nuclear morphologic observation by Hoechst 33342 staining and Annexin V-allophycocyanin and 7-amino-actinomycin D assay. mitoTEMPO, a mitochondrial reactive oxygen species (ROS) scavenger, was used to examine the effects of mitochondrial ROS on cell viability and mitochondrial membrane potential (MMP). Finally, the expression levels of numerous mitochondrial-associated apoptosis proteins were assessed by western blot analysis. These results demonstrated that GRh2 and GRg3 inhibited cell growth and induced apoptosis, and that GRh2 had greater cytotoxicity than GRg3. GRh2 induced generation of more mitochondrial ROS compared with GRg3 in Jurkat cells; however, this effect was ameliorated by subsequent treatment with mitoTEMPO. Furthermore, excess mitochondrial ROS induced by GRh2 was more potent than GRg3 in inhibiting cell proliferation and reducing MMP. In addition, expression levels of apoptosis-associated proteins were significantly increased in Jurkat cells treated with GRh2 than GRg3. In conclusion, these findings suggested that GRh2 and GRg3 induce mitochondrial-associated apoptosis by increasing mitochondrial ROS in human leukemia Jurkat cells. GRh2 may more effectively inhibit cell growth and accelerate apoptosis than GRg3. This study provides a potential novel strategy for the treatment of acute lymphoblastic leukemia.
- Published
- 2017
29. White Organic Light-Emitting Diodes Based on Exciton and Electroplex Dual Emissions
- Author
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sup> 南京邮电大学有机电子与信息显示国家重点实验室培育基地和信息材料与纳米技术研究院,先进生物与化学制造协同创新分中心,南京 ,, Wei Huang, Min-Nan Yan, sup> 南京工业大学柔性电子重点实验室和先进材料研究院,先进生物与化学制造协同创新中心,南京 ,, Linghai Xie, Ying-Nan Wang, Yan Qian, Hong-Mei Zhang, and Kang-Ming Tan
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Materials science ,business.industry ,Exciton ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Dual (category theory) ,OLED ,Optoelectronics ,Physical and Theoretical Chemistry ,0210 nano-technology ,business - Published
- 2017
30. Systematic analysis of the transcriptome in small-cell carcinoma of the oesophagus reveals its immune microenvironment
- Author
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Dongxin Lin, Zi-Xian Wang, Jing-Ping Yun, Qi Zhao, Yan‐Fen Feng, Zhixiang Zuo, Jia-jia Hu, Chao Zhang, Qi-Nian Wu, Min Liu, Ying-Nan Wang, Feng Wang, Hui Sheng, Wei Hua Jia, Jingjing Qi, Jianhua Fu, Jin‐Xin Bei, Hong Yang, Yun-Xin Lu, Yan-Xing Chen, Rui-Hua Xu, Jian Zheng, and Zexian Liu
- Subjects
0301 basic medicine ,lcsh:Immunologic diseases. Allergy ,medicine.medical_treatment ,Immunology ,immune microenvironment ,Biology ,Small-cell carcinoma ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,transcriptome analysis ,medicine ,Carcinoma ,Immunology and Allergy ,small‐cell carcinoma of the oesophagus ,General Nursing ,Microsatellite instability ,Immunotherapy ,Cell cycle ,medicine.disease ,Immune checkpoint ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cancer research ,Original Article ,immunotherapy ,lcsh:RC581-607 - Abstract
Objectives Although the genomic landscape of small‐cell carcinoma of the oesophagus (SCCE) has been dissected, its transcriptome‐level aberration and immune microenvironment status are unknown. Methods Using ultra‐deep whole transcriptome sequencing, we analysed the expression profile of nine paired SCCE samples and compared the transcriptome with public transcriptomic data set of normal oesophageal mucosa and other cancer types. Based on the transcriptome data, the immune signatures were investigated. The genomic data of 55 SCCE samples were also applied for immune checkpoint blockade therapy (ICBT) biomarker evaluation including microsatellite instability (MSI) status, tumor mutation burden (TMB) and neoantigen burden (TNB). Also, we evaluated the CD8, CD68 and programmed death‐ligand 1 (PD‐L1) in 62 retrospective SCCE samples with IHC assay. Results Differential expression analysis revealed that the cell cycle, p53, and Wnt pathways are significantly deregulated in SCCE. Immune microenvironment analysis showed that high leucocyte infiltration and adaptive immune resistance did occur in certain individuals, while the majority showed a relatively suppressive immune status. Immune checkpoints such as CD276 and LAG‐3 were upregulated, and higher M2 macrophage infiltration in tumor tissues. Furthermore, normal tissues adjacent to the tumors of SCCE presented a more activated inflammatory status than tumor‐free healthy controls. These observations showed that ICBT might benefit SCCE patients. As the critical biomarker of ICBT, TMB of SCCE was 3.64 with the predictive objective response rate 13.2%, while the PD‐L1‐positive rate was 43%. Conclusions Our study systematically characterized the immune microenvironment in small‐cell carcinoma of the esophagus and provided evidence that several patients with SCCE may benefit from immune checkpoint blockade therapy., In this study, transcriptomic aberrance and immune microenvironment of small‐cell carcinoma of the esophagus (SCCE) was comprehensively characterized with transcriptome and immunohistochemistry analysis. Assessment of immune checkpoint blockade (ICB) treatment biomarkers provides a rationale for use of ICB treatment in patients with SCCE.
- Published
- 2019
31. Alteration in TET1 as potential biomarker for immune checkpoint blockade in multiple cancers
- Author
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Yan Xing Chen, Hao-Xiang Wu, Ying Nan Wang, Qi Zhao, Ming Ming He, Zi Xian Wang, Feng Wang, and Rui-Hua Xu
- Subjects
0301 basic medicine ,Male ,Cancer Research ,Datasets as Topic ,Mixed Function Oxygenases ,0302 clinical medicine ,Antineoplastic Agents, Immunological ,Neoplasms ,Immunology and Allergy ,Aged, 80 and over ,Immunogenicity ,Middle Aged ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Progression-Free Survival ,Oncology ,030220 oncology & carcinogenesis ,DNA methylation ,Cohort ,Molecular Medicine ,Biomarker (medicine) ,Female ,Drug Monitoring ,Research Article ,Adult ,Adolescent ,Immunology ,Pan-cancer ,Biology ,lcsh:RC254-282 ,03 medical and health sciences ,Young Adult ,Immune system ,Lymphocytes, Tumor-Infiltrating ,Costimulatory and Inhibitory T-Cell Receptors ,Antigens, Neoplasm ,Predictive Value of Tests ,Proto-Oncogene Proteins ,medicine ,Biomarkers, Tumor ,Humans ,Gene ,Aged ,Retrospective Studies ,Pharmacology ,Cancer ,Correction ,Biomarker ,DNA Methylation ,medicine.disease ,Immune checkpoint ,TET1 ,030104 developmental biology ,Mutation ,Cancer research ,Immune checkpoint blockade - Abstract
Background Immune checkpoint inhibitors (ICIs) have achieved impressive success in different cancer types, yet responses vary and predictive biomarkers are urgently needed. Growing evidence points to a link between DNA methylation and anti-tumor immunity, while clinical data on the association of genomic alterations in DNA methylation-related genes and ICI response are lacking. Methods Clinical cohorts with annotated response and survival data and matched mutational data from published studies were collected and consolidated. The predictive function of specific mutated genes was first tested in the discovery cohort and later validated in the validation cohort. The association between specific mutated genes and tumor immunogenicity and anti-tumor immunity was further investigated in the Cancer Genome Altas (TCGA) dataset. Results Among twenty-one key genes involving in the regulation of DNA methylation, TET1-mutant (TET1-MUT) was enriched in patients responding to ICI treatment in the discovery cohort (P 0.05 in both two non-ICI-treated cohorts). In TCGA dataset, TET1-MUT was strongly associated with higher tumor mutational burden and neoantigen load, and inflamed pattern of tumor-infiltrating T lymphocytes, immune signatures and immune-related gene expressions. Conclusions TET1-MUT was strongly associated with higher ORR, better DCB, longer PFS, and improved OS in patients receiving ICI treatment, suggesting that TET1-MUT is a novel predictive biomarker for immune checkpoint blockade across multiple cancer types.
- Published
- 2019
32. IDDF2019-ABS-0288 Fatty acid catabolism impacts the sensitivity of gastrointestinal cancers to platinum-based chemotherapy
- Author
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Ying-Nan Wang
- Subjects
Catabolism ,Colorectal cancer ,business.industry ,Cancer ,medicine.disease ,digestive system diseases ,Oxaliplatin ,chemistry.chemical_compound ,FOLFOX ,chemistry ,Perhexiline ,medicine ,Cardiolipin ,Cancer research ,Carnitine ,business ,neoplasms ,medicine.drug - Abstract
Background Carnitine palmitoyltransferases (CPTs) are capable of transporting fatty acids (FAs) into mitochondria to synthesize cardiolipin and initiate β-oxidation. The aim of this study was to identify the inhibition of CPT-mediated FA catabolism on oxaliplatin sensitivity and its therapeutic potential in gastrointestinal cancers. Methods We investigated oxaliplatin-induced metabolic alterations, disease control rates (DCRs) using gastric cancer (GC) and colorectal cancer (CRC) cells as well as CRC tissues from patients treated with FOLFOX or XELOX regimens (n = 82). The effects of CPT inhibitor perhexiline on the growth of GC and CRC were tested in vitro and in vivo. Results CPT1B and CPT2 were significantly upregulated when GC and CRC cells were treated with oxaliplatin, and increased CPT1B and CPT2 expression correlated with a worse DCR in patients receiving FOLFOX or XELOX. Suppression of CPT2 or delivering perhexiline inhibited the progression of GC and CRC cells by inducing apoptosis, which was due to the loss of cardiolipin, suppression of β-oxidation, destruction of mitochondrial membrane integrity and reduction in ATP production. This process enhanced the antitumor effect of oxaliplatin in vitro and in vivo. Especially, perhexiline treatment significantly suppressed the progression of GC and CRC in patient-derived xenograft (PDX) models, which was closely associated with CPT2 expression. Conclusions Activated expression of FA catabolism is related to the chemoresistance of patients with GC and CRC. Inhibition of CPT cooperates with oxaliplatin to suppress their growth, as CPT1B and CPT2 are potential biomarkers for platinum-based chemotherapy in GC and CRC.
- Published
- 2019
33. IDDF2019-ABS-0268 Linc00920 contributes to the maintenance of mRNA stabilizer IGF2BP2 in colorectal cancer
- Author
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Jia-huan Lu, Huai-Qiang Ju, Ying-Nan Wang, and Yun Wang
- Subjects
Messenger RNA ,Downregulation and upregulation ,Colorectal cancer ,Growth factor ,medicine.medical_treatment ,Autophagy ,Cancer cell ,medicine ,Cancer research ,RNA ,Epigenetics ,Biology ,medicine.disease - Abstract
Background Long non-coding RNAs (lncRNAs) play an unneglectable role in epigenetic regulation of cancer cells, including binding to proteins and regulating cellular metabolism. The aim of this study was to identify a certain lncRNA promoting the progress of advanced colorectal cancer (CRC) with a therapeutic perspective. Methods We screened out highly expressed lncRNAs using samples from patients with stage IV CRC compared with matched adjacent normal tissues. The proteins interacted with linc00920 was confirmed with RNA pull-down and RNA immunoprecipitation (RIP) assay. The proliferation and metabolic alteration of CRC under linc00920 inhibition were tested in vitro and in vivo. Results Linc00920 was upregulated in CRC with poor overall survival and inhibition of linc00920 resulted in impaired growth of CRC cell lines. Moreover, knocking down of linc00920 was consistent with a lower level of insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2), which is known as a m6A ‘reader’ and mRNA stabilizer. Linc00920 bound to the ubiquitination sites of IGF2BP2 and prevented its autophagic degradation, maintaining the MYC-mediated glycolysis in CRC. Moreover, inhibition of linc00920 suppressed the proliferation of tumors from patient-derived xenograft (PDX) models. Conclusions Linc00920-IGF2BP2-MYC axis promotes the progress of CRC as a promising therapeutic target.
- Published
- 2019
34. The lncRNA XIST/miR-125b-2-3p Axis Modulates Cell Proliferation and Chemotherapeutic Sensitivity via Targeting Wee1 in Colorectal Cancer
- Author
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Dong-dong Yang, Hai-Yu Mo, Huai-Qiang Ju, Hui Sheng, Yun Wang, Zhan-Hong Chen, Zhao-Lei Zeng, Jia-jia Hu, Ying-Nan Wang, Jia-huan Lu, Kai Yu, Yan-Xing Chen, Qi-Nian Wu, Rui-Hua Xu, Zexian Liu, and Pei-Shan Hu
- Subjects
Wee1 ,biology ,Colorectal cancer ,Cell growth ,Competing endogenous RNA ,microRNA ,medicine ,Cancer research ,biology.protein ,Institutional Animal Care and Use Committee ,XIST ,medicine.disease ,Metastasis - Abstract
Background: Accumulating evidence has demonstrated that microRNAs regulate diverse tumorigenic processes and play important roles in tumor metastasis and growth. Recently, miR-125b-2-3p was identified as a meaningful prognostic factor for predicting chemotherapeutic sensitivity in advanced colorectal cancer (CRC). However, the biological functions and molecular mechanisms of miR-125b-2-3p in the chemotherapy of advanced CRC have yet to be elucidated. Methods: MiR-125b-2-3p expression was detected by real-time PCR in CRC tissues. Gain-of-function experiments were performed to assess the effect of miR-125b-2-3p on CRC growth, metastasis, invasion and drug sensitivity in vitro and in vivo. Based on multiple databases, the competitive endogenous RNAs (ceRNAs) and target genes for miR-125b-2-3p were predicted and have been confirmed by bioinformatic analysis, luciferase reporter assays, rescue experiments and western blot assays. Findings: MiR-125b-2-3p expression was significantly downregulated in CRC tissues and cell lines. MiR-125b-2-3p overexpression was correlated with lower proliferation rates, fewer metastases and better chemotherapeutic sensitivity in vitro and in vivo. Mechanistically, miR-125b-2-3p was regulated by lncRNA XIST and influenced the expression of the WEE1 G2 checkpoint kinase (WEE1). Interpretation: These findings suggested that the lncRNA XIST-miR-125b-2-3p-WEE1 axis not only regulated CRC growth and metastasis but also contributed to chemotherapeutic resistance, thus identifying a potential therapeutic target for CRC. Funding: National Natural Science Foundation of China (81572392), Guangdong special support program (2016TQ03R614), National Key RD Natural Science Foundation of Guangdong Province (2014A030312015); Science and Technology Program of Guangdong (2019B020227002); Science and Technology Program of Guangzhou (201904020046, 201803040019, 201704020228). Declaration of Interest: The authors declare no conflicts of interest. Ethical Approval: This study was approved by the institutional ethics review board of SYSUCC (Guangzhou, China). Our animal study was approved by the Institutional Animal Care and Use Committee of Sun Yat-sen University.
- Published
- 2019
35. Inhibition of autophagy potentiates anticancer property of 20(S)-ginsenoside Rh2 by promoting mitochondria-dependent apoptosis in human acute lymphoblastic leukaemia cells
- Author
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Jian-Pei Fang, Ziqi Yu, Jia Song, Ting Xia, Qidan Chen, Yuanyuan Wang, Jiancheng Wang, Jianye Cai, Ying-Nan Wang, Wei Huang, and Min Wang
- Subjects
0301 basic medicine ,Mitochondrial ROS ,autophagy ,Programmed cell death ,acute lymphoblastic leukaemia ,Ginsenosides ,Cell Survival ,Mitochondrion ,Jurkat cells ,Autophagy-Related Protein 5 ,ginsenoside Rh2 ,Jurkat Cells ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,Humans ,Cytotoxic T cell ,Medicine ,Cells, Cultured ,Cell Proliferation ,business.industry ,Cell growth ,Adenine ,Autophagy ,apoptosis ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,Antineoplastic Agents, Phytogenic ,Mitochondria ,030104 developmental biology ,Oncology ,Apoptosis ,030220 oncology & carcinogenesis ,Immunology ,Cancer research ,RNA Interference ,Reactive Oxygen Species ,business ,Research Paper - Abstract
Acute lymphoblastic leukaemia (ALL) is the most prevalent childhood malignancy. Although most children with ALL are cured, there is still a group of patients for which therapy fails owing to severe toxicities and drug resistance. Ginsenoside Rh2 (GRh2), a major bioactive component isolated from Panax ginseng, has been shown to have a therapeutic effect on some tumors. However, the molecular mechanisms of cell death induced by 20(S)-GRh2 in ALL cells remains unclear. In this study, we showed that 20(S)-GRh2 inhibited the cell growth and induced mitochondria-dependent apoptosis and autophagy. But it has no cytotoxic effect on human normal blood cells. Furthermore, autophagy plays a protective role in 20(S)-GRh2-induced apoptosis in ALL cell lines and human primary ALL cells. We demonstrated that either genetic or pharmacologic inhibition of autophagy could be more effective in reducing viability and enhancing 20(S)-GRh2-induced toxicity than 20(S)-GRh2 treatment alone. In addition, inhibition of autophagy could aggravate mitochondrial ROS generation and mitochondrial damage, and then accelerate mitochondria-dependent apoptosis. Taken together, these results suggest that inhibition of autophagy can sensitize ALL cells towards 20(S)-GRh2. The appropriate inhibition of autophagy could provide a powerful strategy to increase the potency of 20(S)-GRh2 as a novel anticancer agent for ALL therapy.
- Published
- 2016
36. Association of long non-coding RNA biomarkers with clinically immune subtype and prediction of immunotherapy in patients with cancer
- Author
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Yunfang Yu, Qiyun Ou, Anlin Li, Herui Yao, Wenhong Zhang, Yuling Zhang, Erwei Song, Y. Chen, R. Liu, Ying-Nan Wang, and Zifan He
- Subjects
Oncology ,medicine.medical_specialty ,Bladder cancer ,business.industry ,medicine.medical_treatment ,Melanoma ,Hematology ,Immunotherapy ,medicine.disease ,Long non-coding RNA ,Breast cancer ,Immune system ,Cancer immunotherapy ,Internal medicine ,medicine ,Lung cancer ,business - Abstract
Background Long non-coding RNAs (lncRNAs) are involved in innate and adaptive immunities in cancers by mediating the functional states of immunologic cells, pathways, and genes. However, whether lncRNAs could serve as effective biomarkers for molecular classification and prediction of cancer immunotherapy efficacy are largely unknown. Methods This study analyzed lncRNA and genomic data of 348 atezolizumab-treated bladder cancer patients from phase II IMvigor 210 trial and 3,021 patients in lung cancer, breast cancer, bladder cancer, and melanoma cohorts from The Cancer Genome Atlas. We investigated lncRNA-based immune subtypes associated with cancer immunotherapy efficacy. We built a novel lncRNA score using computational algorithms and integrated it with programmed-death ligand 1 (PD-L1) expression and tumor mutation burden (TMB) to achieve accurate immunotherapeutic prediction. Results The results from IMvigor 210 trial showed that four distinct microenvironment-based subtypes characterized by lncRNA expression and tumor specific cytotoxic T lymphocytes (CTLs) infiltration had significant difference in overall survival (OS) (hazard ratio [HR] 0.77, 95%CI 0.67–0.88; P = 0.0002), with the greatest benefits in Immune-Active Class, followed by Immune-Exclusion Class, Immune-Dysfunctional Class, and Immune-Desert Class. High NKILA lncRNA expression was identified as a negative predictor of immunotherapeutic OS benefits and a critical regulator of dysfunctional immune response. Patients with low- versus high- lncRNA scores were associated with significantly longer OS in IMvigor 210 trial (HR 0.32, 95% CI 0.24–0.42; P Conclusion We suggested immunotherapy for patients in Immune-Functional Class, especially for those in high CTL Immune-Active Class. Multiomics comprising lncRNA score, PD-L1 expression and TMB could accurately predict immunotherapy efficacy. Legal entity responsible for the study Herui Yao. Funding Grants from the National Natural Science Foundation of China (81372819, 81572596, U1601223), the Natural Science Foundation of Guangdong Province (2017A030313828), the Guangzhou Science and Technology Program (201704020131), the Sun Yat-Sen University Clinical Research 5010 Program (2018007). Disclosure All authors have declared no conflicts of interest.
- Published
- 2019
37. IDDF2018-ABS-0184 LNCRNA AGPG regulates anabolism remodelling through affecting PFKFB3 stability in escc
- Author
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Yun Wang, Jia Liu, Hong-En Yu, Jia-huan Lu, Huai-Qiang Ju, Yun-Xin Lu, Qi-Nian Wu, Ying-Nan Wang, Zexian Liu, Chau-Wei Wong, and Rui-Hua Xu
- Subjects
Cyclin-dependent kinase 1 ,medicine.anatomical_structure ,Cell growth ,RNA interference ,Cell ,medicine ,Cancer research ,Gene silencing ,Transfection ,Cell cycle ,Biology ,Carcinogenesis ,medicine.disease_cause - Abstract
Background Tumour cells often exhibit altered energy metabolism for tumour progression, but whether long noncoding RNAs (lncRNAs) are involved in this process remains elusive. We aimed to identify novel lncRNAs significantly affecting the development of Esophageal Squamous Cell Carcinoma (ESCC) and investigate the metabolism-related mechanisms. Methods A siRNA library was established using top 100 lncRNAs highly expressed in ESCC screened from TCGA database and transfected into ESCC cells to identify lncRNAs that significantly affected cell glucose metabolism and proliferation. RNAscope in situ hybridization, qRT-PCR and RNAi assays were performed to investigate the functional role of lncRNA AGPG (Actin Gamma 1 Pseudogene) and clinical relevance. In vivo, cell-based and patient-derived xenograft (PDX) models were used to further explore roles of AGPG in ESCC tumorigenesis. RNA pull-down, mass spectrometry analyses, western blot and RNA-binding protein immunoprecipitation (RIP) were performed to identify interaction proteins and related mechanisms. Results We identified that lncRNA AGPG was markedly increased in ESCC and correlated with poor prognosis. AGPG depletion significantly repressed ESCC cell proliferation and glycolytic activity including decreased glucose uptake and increased lactate production. In vivo experiments further showed that silencing AGPG decreased tumours growth in cell-based xenografts and PDX models. Mechanistically, AGPG could interact with 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 3 (PFKFB3) in the nucleus, thus enhancing PFKFB3 stability via preventing its ubiquitination and proteosomal degradation. Subsequently, AGPG-PFKFB3 promoted glycolysis and dysregulated cell cycle by suppressing p27 and over-activating cyclin-dependent kinase 1(CDK1), thereby leading to G1/S cell cycle progression. Additionally, TP53 could bind to the promoter of AGPG to negatively regulate its expression. Conclusions We first identified that AGPG, which is regulated by TP53, is playing a pivotal role in glucose metabolism remodelling and cell proliferation through enhancing PFKFB3 stability, thus facilitating the development of ESCC. Collectively, our study suggests that TP53-AGPG-PFKFB3 axis might serve as potential biomarkers and therapeutic targets in ESCC.
- Published
- 2018
38. The genomic landscape of small cell carcinoma of the esophagus
- Author
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Hong Su, Feng Wang, Yan Hui Liu, Yan Ru Qin, Rui-Hua Xu, Gang Chen, Zexian Liu, Jin Xin Bei, Ying Nan Wang, Yi Fu He, You En Lin, Qing Feng Zou, Qi Zhao, Xin Ming Liu, and Dong Bing Liu
- Subjects
0301 basic medicine ,Male ,Mutation rate ,Lung Neoplasms ,Esophageal Neoplasms ,Genome-wide association study ,Nerve Tissue Proteins ,Biology ,Small-cell carcinoma ,Polymorphism, Single Nucleotide ,Genetic profile ,03 medical and health sciences ,Text mining ,Mutation Rate ,medicine ,Carcinoma ,Humans ,Esophagus ,Carcinoma, Small Cell ,Molecular Biology ,Letter to the Editor ,Genetics ,business.industry ,Receptor-Like Protein Tyrosine Phosphatases, Class 2 ,Cell Biology ,Genetic Profile ,medicine.disease ,Cyclic Nucleotide Phosphodiesterases, Type 3 ,030104 developmental biology ,medicine.anatomical_structure ,Receptor-Like Protein Tyrosine Phosphatases ,Intercellular Signaling Peptides and Proteins ,Female ,Esophageal Squamous Cell Carcinoma ,business ,Genome-Wide Association Study - Published
- 2018
39. Bone marrow-derived mesenchymal stem cell-secreted IL-8 promotes the angiogenesis and growth of colorectal cancer
- Author
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Yong Cao, Bin Zhang, Xin Sui, Shaochuan Wang, Xiaoyong Chen, Hongyu Li, Muyun Liu, Jiangqiang Shi, Wu Song, Adham Sameer A. Bardeesi, Maosheng Wang, Jiancheng Wang, Ying-Nan Wang, Jianye Cai, Zijie Cai, Weijun Huang, and Andy Peng Xiang
- Subjects
Angiogenesis ,Mice, Nude ,Bone Marrow Cells ,Enzyme-Linked Immunosorbent Assay ,colorectal cancer ,Transfection ,Small hairpin RNA ,Mice ,angiogenesis ,Paracrine signalling ,Human Umbilical Vein Endothelial Cells ,medicine ,Animals ,Humans ,RNA, Small Interfering ,Cells, Cultured ,Cell Proliferation ,mesenchymal stem cells ,Neovascularization, Pathologic ,Traditional medicine ,Reverse Transcriptase Polymerase Chain Reaction ,Cell growth ,business.industry ,Interleukin-8 ,Mesenchymal stem cell ,Immunohistochemistry ,Coculture Techniques ,medicine.anatomical_structure ,Oncology ,Tumor progression ,Culture Media, Conditioned ,Cancer research ,Heterografts ,Human umbilical vein endothelial cell ,Bone marrow ,Colorectal Neoplasms ,business ,Research Paper - Abstract
Mesenchymal stem cells (MSCs) have recently been shown to home to tumors and contribute to the formation of the tumor-associated stroma. In addition, MSCs can secrete paracrine factors to facilitate tumor progression. However, the involvement of MSC-derived cytokines in colorectal cancer (CRC) angiogenesis and growth has not been clearly addressed. In this study, we report that interleukin-8 (IL-8) was the most highly upregulated pro-angiogenic factor in MSCs co-cultured with CRC cells and was expressed at substantially higher levels in MSCs than CRC cells. To evaluate the effect of MSC-derived IL-8 on CRC angiogenesis and growth, we used MSCs that expressed small hairpin (interfering) RNAs (shRNA) targeting IL-8 (shIL-8-MSCs). We found that MSC-secreted IL-8 promoted human umbilical vein endothelial cell (HUVEC) proliferation and migration, tube-formation ability and CRC cell proliferation. Additionally, in vivo studies showed that MSCs promoted tumor angiogenesis partially through IL-8. Taken together, these findings suggest that IL-8 secreted by MSCs promotes CRC angiogenesis and growth and can therefore serve as a potential novel therapeutic target.
- Published
- 2015
40. A Study on Outdoor SVG Overheat Capacity Reduction Control Strategy
- Author
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Zhe Ren, Ying Nan Wang, Cong Yu Bai, and Shu Han Wang
- Subjects
Engineering ,Temperature monitoring ,business.industry ,Internal space ,Control (management) ,Scalable Vector Graphics ,General Medicine ,computer.file_format ,Automotive engineering ,law.invention ,Reduction (complexity) ,Bluetooth ,InformationSystems_GENERAL ,law ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Wireless ,business ,computer ,Simulation - Abstract
Outdoor SVG is the SVG that is derived from conventional SVG, and can be used on sites of limited space. After repeated technical upgrading, this kind of SVG is functioning more and more stably, and is well received by clients. However, since the internal space of outdoor SVG is greatly compressed, and overheat trip still occurs in “extreme environment”. Because the “extreme environment” is just occasional, increase in number or power of fans will greatly increase equipment cost and failure points, most SVG manufacturers are not willing to adopt this strategy. In this paper, the outdoor SVG “overheat capacity reduction” control strategy based on wireless bluetooth humidity and temperature monitoring system is proposed, which ensures that the equipment can run safely in “extreme environment”, saving labor and materials remarkably.
- Published
- 2014
41. CPT1A-mediated fatty acid oxidation promotes colorectal cancer cell metastasis by inhibiting anoikis
- Author
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Tie Bang Kang, Dan Xie, Bo Li, Kai Yu, Jia-huan Lu, Zexian Liu, Rui-Hua Xu, Heng Ying Pu, Peng Huang, Ying Nan Wang, Ting Li, Huai-Qiang Ju, Yun Xin Lu, Yun Wang, Zhao Lei Zeng, Zi Xian Wang, Ming shi, Feng Wang, Wei Hua Jia, Qi Nian Wu, Qi Zhao, and Ming Ming He
- Subjects
0301 basic medicine ,Male ,Cancer Research ,Colorectal cancer ,Cell ,Mice, Nude ,Biology ,Metastasis ,03 medical and health sciences ,HT29 Cells ,Mice ,Downregulation and upregulation ,Cell Line, Tumor ,Genetics ,medicine ,Animals ,Humans ,Anoikis ,Neoplasm Metastasis ,neoplasms ,Molecular Biology ,Mice, Inbred BALB C ,Carnitine O-Palmitoyltransferase ,Fatty Acids ,medicine.disease ,HCT116 Cells ,Lipid Metabolism ,digestive system diseases ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,Caco-2 ,Cell culture ,Cancer research ,Caco-2 Cells ,Colorectal Neoplasms ,Reactive Oxygen Species ,Oxidation-Reduction - Abstract
Anoikis is a critical obstacle to cancer metastasis. Colorectal cancer (CRC) exhibits a high rate of metastasis, leading to death, and the mechanisms involved in anoikis resistance are still unclear. We identified that the fatty acid oxidation (FAO) pathway was activated in detached CRC cells. Multiple genes in the FAO pathway, specifically the rate-limiting enzyme CPT1A, were upregulated in CRC cells grown in suspension. Reactive oxygen species elimination mediated by CPT1A in CRC cells was vital to anoikis resistance. In vivo experiments showed that CPT1A-suppressed CRC cells colonized the lung at a much lower rate than normal CRC cells, suggesting that CPT1A-mediated FAO activation increased metastatic capacity. In clinical tissue specimens from CRC patients, elevated expression of CPT1A was observed in metastatic sites compared with primary sites. Our results demonstrate that CPT1A-mediated FAO activation induces CRC cells to resist anoikis, suggesting that CPT1A is an attractive target for treating metastatic CRC.
- Published
- 2017
42. A Novel RBF-PID Control Strategy for Main Steam Temperature Based on QPSO Algorithm
- Author
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Juan-Juan Ren, Yue-Chao Wang, Zhi-Qiang Pang, Feng-Ping Pan, Ling-Ling Shi, and Ying-Nan Wang
- Subjects
Control theory ,Computer science ,Steam temperature ,PID controller - Published
- 2017
43. Research on Optimal Application of SVG in Substation Regulated Voltage
- Author
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Feng Li Han, Peng Jin, Hai Sheng Li, Shu Han Wang, Si Cong Wu, Zhe Ren, and Ying Nan Wang
- Subjects
Engineering ,business.industry ,Electrical engineering ,Scalable Vector Graphics ,General Medicine ,computer.file_format ,Line (electrical engineering) ,law.invention ,Capacitor ,Terminal (electronics) ,law ,Electronic engineering ,Voltage regulation ,business ,Low voltage ,computer ,Voltage drop ,Voltage - Abstract
In order to solve the problem of low voltage at a terminal rural power grid 66kV substation, a 5000-kilovar SVG is arranged in the substation to elevate and stabilize the 10kV bus voltage. Since put into operation, SVG runs well, solving the problem of low voltage while lowering the loss of the entire line. However, in some cases, people find that while stabilizing the bus voltage, SVG causes voltage drop in adjacent substation, and act of the intelligent capacitor unit in the adjacent substation, thus leading to opposite reactive response of SVG, affecting voltage stabilization of the two substations and adding up to equipment loss. This paper analyzes this phenomenon and has proposed an approach of correction.
- Published
- 2014
44. The Experiments of Dual Kalman Filter in Lithium Battery SOC Estimation
- Author
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Jian Long Huang, Li Ligang, Zhongfeng Wang, Ying Nan Wang, and Feng Li Han
- Subjects
Battery (electricity) ,Engineering ,business.industry ,General Medicine ,Kalman filter ,Battery pack ,Invariant extended Kalman filter ,Extended Kalman filter ,State of charge ,Control theory ,ComputerSystemsOrganization_SPECIAL-PURPOSEANDAPPLICATION-BASEDSYSTEMS ,Fast Kalman filter ,business ,Alpha beta filter - Abstract
We use Thevenin battery model and Kalman filter algorithm to online estimate lithium-ion battery pack state of charge (SOC) in this paper. In order to improve the accuracy of the model we use least square method and Dual Kalman filter (DEKF) algorithms to identify the parameters of model. The battery model can reflect the true state of internal battery well. The principle of Kalman filter algorithm is introduced. The relevant battery testing laboratory is designed. The algorithm has better accuracy when online estimate SOC and adapt to the environment well from experimental results. Finally, the convergence and robustness of DEKF algorithm are verified. It solves the problems that initial estimates are not accuracy and cumulative error.
- Published
- 2014
45. Temperature prediction of nano-iron powder decomposing furnace based on SAPSO-ELM
- Author
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Ying-Nan Wang, Sheng-Hui Wang, and Jin-You Wang
- Subjects
0209 industrial biotechnology ,Artificial neural network ,Computer science ,Threshold limit value ,Generalization ,Computer Science::Neural and Evolutionary Computation ,Particle swarm optimization ,02 engineering and technology ,Iron powder ,Set (abstract data type) ,Matrix (mathematics) ,020901 industrial engineering & automation ,Physics::Plasma Physics ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Algorithm ,Simulation ,Extreme learning machine - Abstract
A temperature prediction model based on Self-adaption Particle Swarm Optimization (SAPSO) and Extreme Learning Machine (ELM) is proposed in this paper. The nano-iron powder decomposing furnace temperature prediction model is established based on ELM. ELM, a neural network, is developed rapidly in recent years, but it requires a lot of hidden layer neurons to achieve ideal prediction accuracy. In order to solve this problem, SAPSO is used to optimize ELM input weight matrix and the hidden layer threshold value in this paper, which simplifies the ELM. The accuracy of this method is verified by choosing the related factors, using field data and simulation. Different numbers of neurons are set to compare with ordinary ELM. And the test shows that SAPSO-ELM temperature prediction model has better generalization.
- Published
- 2016
46. Tumor mutational and indel burden: a systematic pan-cancer evaluation as prognostic biomarkers
- Author
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Zhi Qiang Wang, Hao-Xiang Wu, Ying-Nan Wang, Zi-Xian Wang, Lu-Ping Yang, Chao Ren, Qi Zhao, Ying Jin, Dong Liang Chen, Feng Wang, Huiyan Luo, and Ming-Ming He
- Subjects
0301 basic medicine ,Oncology ,medicine.medical_specialty ,Pan cancer ,Proportional hazards model ,business.industry ,General Medicine ,Frameshift mutation ,Inverse probability of treatment weighting ,03 medical and health sciences ,Editorial ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,Biomarker (medicine) ,Original Article ,In patient ,business ,Indel ,Survival analysis - Abstract
Background: Tumor mutational burden (TMB) has been widely studied as a predictive biomarker of response to immune checkpoint inhibitors (ICIs). Besides, evidence suggests frameshift indels are a highly immunogenic mutational class and thus a potentially superior biomarker. However, the general prognostic impact of TMB and indel burden in patients with solid tumors has not been systematically investigated. Methods: We analyzed 20 primary solid cancer types from The Cancer Genome Atlas (TCGA) database. Clinicopathologic factors, TMB and indel burden were collected or calculated. For each cancer type, the impact of TMB or indel burden on overall survival (OS) was evaluated using the Kaplan-Meier method and Cox regression with the method of inverse probability of treatment weighting. Results: Twenty cancer types from 6,035 patients were analyzed. Survival analysis showed that TMB had a significant impact on OS in 14 out of these 20 cancer types. According to the general survival impact of TMB, they could be classified into three groups, namely the TMB-Worse (eight cancer types), TMB-Better (six cancer types) and TMB-Similar (six cancer types) group, in which higher TMB was associated with inferior, superior, or similar OS, respectively. The survival impacts of TMB in the TMB-Worse and TMB-Better groups were generally consistent when limited to genes from two FDA-approved panels. Notably, in two out of the six cancer types in the TMB-Similar group, the indel burden significantly affected OS. Conclusions: TMB, as well as indel burden, has divergent prognostic impact in different cancer types, thus could be incorporated in prognostication and risk stratification. More importantly, the general prognostic impact should be taken into account when establishing the predictive function of TMB to ICI treatment.
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- 2019
47. Evaluation of POLE and POLD1 Mutations as Biomarkers for Immunotherapy Outcomes Across Multiple Cancer Types
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Qi Zhao, Ming Ming He, Ying Jin, Feng Wang, Rui-Hua Xu, Zexian Liu, and Ying Nan Wang
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Oncology ,Cancer Research ,medicine.medical_specialty ,Mutation ,POLD1 ,business.industry ,medicine.medical_treatment ,Medical record ,MEDLINE ,Cancer ,Immunotherapy ,medicine.disease ,medicine.disease_cause ,Cancer immunotherapy ,Internal medicine ,medicine ,business ,Cohort study - Abstract
This cohort study analyzes the medical records of 47 721 patients with various cancer types with POLE/POLD1 mutations to evaluate whether the mutations were associated with immunotherapy outcomes.
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- 2019
48. Abstract 4242: Systematic transcriptome analysis of small cell carcinoma of esophagus suggests a possibility for immunotherapy
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Qi Zhao, Yan-xing Chen, Ying-nan Wang, Qi-nian Wu, Hui Sheng, JIa-jia Hu, Yun-xin Lu, Ze-xian Liu, Zhi-xiang Zuo, Feng Wang, and Rui-hua Xu
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Cancer Research ,Oncology - Abstract
Background/Aims: Small cell carcinoma of the esophagus (SCCE) is a rare and highly deadly malignancy with rapid disease progress and extensive metastasis, whereas present therapy for the cancer is limited, making the identification of a new treatment strategy an area of intense research. We previous reported the genomic characteristics and alterations of the SCCE, but the transcriptome abnormality of the cancer has not been investigated yet. Method: we performed an RNA Sequencing on nine paired samples from patients with SCCE and conducted a series of comprehensive analysis on the data. DESeq2 and GSEA were applied on transcriptome of SCCE tumor tissue and their para-normal to identify differential expressive genes and associated pathways. Besides, with MCP-counter and a list of immunity related genes, we also compared immune signal of the expression data in pair. By applying a rigorous batch removing strategy, including preprocessing raw data in identical method and RUVSeq, transcriptome data of healthy esophageal mucosa from GTEx was involved as control samples in comparison. In addition, we applied CIBERSORT to calculate the fraction of different tumor infiltrated leukocytes (TILs) of SCCE and compare the number with those of other cancers that have been proven to be potentially responsive to immunotherapy. Results: We identified 1486 and 1782 genes were significantly up-regulated and down-regulated in SCCE tumor tissue against their para-normal, respectively. Pathway analysis revealed the E2F Target and G2M checkpoint are significantly enriched in tumor tissue. Immune signal analysis across the samples in pair showed that in 3 out of 9 paired sample, immunity reaction upregulates in tumor tissue. T-SNE cluster across transcriptome data of SCCE tumor tissue, their para-normal and healthy esophageal mucosa showed the para-normal tissue, namely the normal tissue adjacent to tumor, is more similar to tumor tissue than the healthy. CIBERSORT analysis showed the difference in TILs fraction between SCCE and the compared cancers. For example, the relative fraction of plasma cell of SCCE is higher than those of ESCC(P=0.040), CIN type of STAD(P=0.040), while lower than those of SCLC(P=0.020). M2 macrophages is higher in SCCE than ESCC(P=0.002), EAC(P Conclusion: In summary, our analysis provides transcriptome evidence that immunotherapy might be an efficient treatment strategy for small cell esophagus cancer. Citation Format: Qi Zhao, Yan-xing Chen, Ying-nan Wang, Qi-nian Wu, Hui Sheng, JIa-jia Hu, Yun-xin Lu, Ze-xian Liu, Zhi-xiang Zuo, Feng Wang, Rui-hua Xu. Systematic transcriptome analysis of small cell carcinoma of esophagus suggests a possibility for immunotherapy [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 4242.
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- 2019
49. Abstract 4161: Germline mutational profileof Chinese patients with colorectal cancer and diagnosed lower than 70 years
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Zhizhong Pan, Qi Zhao, Feng Wang, Jian Yong Shao, Fu-rong Liu, Teng-Jia Jiang, Pei-Rong Ding, Jia-jia Hu, Ying-Nan Wang, and Rui-Hua Xu
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Colorectal cancer ,Cancer ,MLH1 ,medicine.disease ,digestive system diseases ,MSH6 ,Germline mutation ,MUTYH ,MSH2 ,Internal medicine ,PMS2 ,Medicine ,business - Abstract
Background/Aims: Colorectal cancer (CRC) is a common cancer worldwide with increasing morbidity in China. Approximately 5% CRC are caused by well-defined hereditary CRC syndromes, whose inherited susceptibility account for nearly one-third of CRC predisposition. Most of hereditary CRC syndromes were diagnosed at the age of lower than 70, whereas little is known about the mutational profiles Chinese patients and their correlations with clinical features. Method: In our present research, we retrospectively collected 731 patients who were diagnosed as CRC from Sun Yat-sen University Cancer Center, with ages lower than 70. All of them received genetic mutation detection consisting of a set of 14 specific inherited genes, which used target area capture and the second-generation high throughput sequencing technology. The characteristics of he patients with or without mutations were compared. We applied several comparison analysis to investigate the germline mutations distribution of genes that associated with the defined hereditary CRC syndromes in Chinese cohort. Results: 397 patients (54.3%) harbored functionally variants of the 14 genes in CRC patients that diagnosis lower than 70. Intriguingly, we observed no statistical difference for clinical factors such as age, sex, smoke, drink, family history, pathology grade, clinic stage and overall survival between groups. In Mut group, the mutation frequency of each genes are MLH1(21.4%), MSH2(17.6%), MSH6(15.1%), PMS2(9.3%), EPCAM(8.3%), MLH3(8.1%), AXIN2(7.1%), PMS1(4.0%), MUTYH(12.8%), APC(12.3%), STK11(3.5%), BMPR1A(1.8%), SMAD4(0.3%), PTEN(1.0%). Genome mutual exclusivity analysis has identified a set of genes such as MLH1, MSH2, MUTYH, MSH6, APC and PMS2, for which most pairwise combinations are found rarely cooccurred. In correlation analysis between mutational genes and clinical features, pathology grade correlates strongly with PMS1 and SMAD4(P Conclusion: The clinic features of two groups have no statistic difference, which suggested other genes undiscovered may play a partial role in pathogenesis of patients of non-MUT group. In summary, we conducted a retrospective study to lead a comprehensive comparison of mutational profiles between MUT and non-MUT hereditary CRC patients, which supplemented the limited data of hereditary CRC in China. Citation Format: Feng Wang, Qi Zhao, Teng-jia Jiang, Ying-nan Wang, Fu-rong Liu, Jia-jia Hu, Pei-rong Ding, Zhi-zhong Pan, Jian-yong Shao, Rui-hua Xu. Germline mutational profileof Chinese patients with colorectal cancer and diagnosed lower than 70 years [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 4161.
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- 2019
50. Correlation of Milestone Restricted Mean Survival Time Ratio With Overall Survival Hazard Ratio in Randomized Clinical Trials of Immune Checkpoint Inhibitors
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Zi Xian Wang, Ying Nan Wang, Li Xie, Hui Yan Luo, Lu Ping Yang, Gong Chen, Feng Wang, Rui-Hua Xu, Hao-Xiang Wu, Pei-Rong Ding, Ming Ming He, Dan Xie, and Yu Hong Li
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Oncology ,medicine.medical_specialty ,Disease-Free Survival ,law.invention ,Antineoplastic Agents, Immunological ,Randomized controlled trial ,law ,Neoplasms ,Internal medicine ,medicine ,Milestone (project management) ,Humans ,Survival analysis ,Proportional Hazards Models ,Randomized Controlled Trials as Topic ,Original Investigation ,business.industry ,Proportional hazards model ,Surrogate endpoint ,Research ,Hazard ratio ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,Genes, cdc ,Online Only ,Meta-analysis ,RMST ,business - Abstract
This systematic review and meta-analysis examines randomized clinical trials (RCTs) of immune checkpoint inhibitors to evaluate the use of milestone rate and milestone restricted mean survival time as intermediate end points in immune checkpoint inhibitor trials., Key Points Question What intermediate end points could be useful in randomized clinical trials studying immune checkpoint inhibitors? Findings In this systematic review and meta-analysis of 26 trials studying immune checkpoint inhibitors in 12 892 participants, the ratio of milestone restricted mean survival time for overall survival was more strongly correlated with the overall survival hazard ratio than the ratio of overall survival milestone rates. Meaning Milestone restricted mean survival time could be studied as a potential intermediate end point for overall survival in future trials of immune checkpoint inhibitors., Importance Immune checkpoint inhibitors (ICIs) have unique patterns of response and survival that differ from conventional chemotherapies. Novel intermediate end points are urgently required to detect the early signals of ICI activity. Objective To evaluate milestone rate (Kaplan-Meier estimates of survival probabilities at given time points) and milestone restricted mean survival time (RMST, the area under survival curves up to given time points) as potential intermediate end points for ICI trials. Data Sources Electronic databases (pre-MEDLINE, MEDLINE, Embase, and the Cochrane Central Register of Controlled Trials) were searched for randomized clinical trials published between January 1, 2000, and December 31, 2017. Study Selection Phase 2 and phase 3 randomized clinical trials evaluating ICIs in advanced solid tumors. Data Extraction and Synthesis Two investigators extracted the data and reconstructed individual patient data to estimate the milestone rate or milestone RMST from the published Kaplan-Meier curves. Main Outcomes and Measures Trial-level milestone rates or milestone RMSTs were estimated for 6-month and 9-month progression-free survival (PFS) and 9-month and 12-month overall survival (OS). A weighted linear regression model evaluated the correlations of ratios of milestone rates or milestone RMSTs with OS hazard ratios (HRs). Results Twenty-six trials examining 8 different tumor types were identified, including 12 892 patients. Overall survival HR was correlated with the ratio of 9-month OS milestone rate (R2 = 0.45; 95% CI, 0.27-0.74), and with the ratio of 12-month OS milestone rate (R2 = 0.40; 95% CI, 0.22-0.70). The ratio of 9-month OS milestone RMST (R2 = 0.60; 95% CI, 0.28-0.74) and ratio of 12-month OS milestone RMST were correlated with OS HR (R2 = 0.64; 95% CI, 0.42-0.78). No correlations were observed between OS HR and the ratio of 6-month or 9-month PFS milestone rates or milestone RMSTs. Conclusions and Relevance Ratios of OS milestone RMSTs had a stronger correlation with OS HRs than ratios of OS milestone rates, whereas ratios of PFS milestone rates and ratios of PFS milestone RMSTs were not correlated with OS HRs. The OS milestone RMST could be further studied as an intermediate end point in future ICI trials.
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- 2019
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