12,657 results on '"Yin,Li"'
Search Results
2. LLM-AutoDiff: Auto-Differentiate Any LLM Workflow
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Yin, Li and Wang, Zhangyang
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Computer Science - Computation and Language - Abstract
Large Language Models (LLMs) have reshaped natural language processing, powering applications from multi-hop retrieval and question answering to autonomous agent workflows. Yet, prompt engineering -- the task of crafting textual inputs to effectively direct LLMs -- remains difficult and labor-intensive, particularly for complex pipelines that combine multiple LLM calls with functional operations like retrieval and data formatting. We introduce LLM-AutoDiff: a novel framework for Automatic Prompt Engineering (APE) that extends textual gradient-based methods (such as Text-Grad) to multi-component, potentially cyclic LLM architectures. Implemented within the AdalFlow library, LLM-AutoDiff treats each textual input as a trainable parameter and uses a frozen backward engine LLM to generate feedback-akin to textual gradients -- that guide iterative prompt updates. Unlike prior single-node approaches, LLM-AutoDiff inherently accommodates functional nodes, preserves time-sequential behavior in repeated calls (e.g., multi-hop loops), and combats the "lost-in-the-middle" problem by isolating distinct sub-prompts (instructions, formats, or few-shot examples). It further boosts training efficiency by focusing on error-prone samples through selective gradient computation. Across diverse tasks, including single-step classification, multi-hop retrieval-based QA, and agent-driven pipelines, LLM-AutoDiff consistently outperforms existing textual gradient baselines in both accuracy and training cost. By unifying prompt optimization through a graph-centric lens, LLM-AutoDiff offers a powerful new paradigm for scaling and automating LLM workflows - mirroring the transformative role that automatic differentiation libraries have long played in neural network research.
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- 2025
3. Anomalous temperature-dependent magnetization in the nearly collinear antiferromagnet Y$_2$Co$_3$
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Shi, Yunshu, Cao, Huibo, Wu, Hung-Cheng, Yin, Li, Harrison, Neil, Parker, David S., Bhowmick, Tushar, McNamee, Tessa, Safari, Fatemeh, Budko, Sergey L., Fettinger, James C., Kauzlarich, Susan M., Klavins, Peter, Popov, Dmitry, Kumar, Ravhi, Hemley, Russell J., Deemyad, Shanti, Sato, Taku J., Canfield, Paul. C., and Taufour, Valentin
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Condensed Matter - Strongly Correlated Electrons - Abstract
Y$_2$Co$_3$ is a newly discovered antiferromagnetic (AFM) compound with distorted kagome layers. Previous investigations via bulk magnetization measurements suggested a complex noncollinear magnetic behavior, with magnetic moments primarily anti-aligned along the $b$ axis and some canting towards the $ac$ plane. In this study, we report the magnetic structure of Y$_2$Co$_3$ to be an A-type AFM structure with ferromagnetic (FM) interactions within the distorted kagome plane and an interplane antiferromagnetic interaction, as determined by single-crystal neutron diffraction. The magnetic moments align along the $b$ axis, with minimal canting towards the $c$ axis, at odds with the previous interpretation of bulk magnetization measurements. The magnetic moments on the two distinct Co sites are [0, -0.68(3), 0] $\mu_B$ and [0, 1.25(4), 0.07(1)] $\mu_B$. We attribute the previously reported "noncollinear" behavior to the considerable temperature dependence of itinerant AFM exchange interactions, induced by thermal contraction along the $b$ axis. Additionally, our examination of lattice constants through pressure studies reveals compensating effects on FM and AFM interactions, resulting in negligible pressure dependence of $T_\textrm{N}$.
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- 2025
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4. Enhanced Multi-Object Tracking Using Pose-based Virtual Markers in 3x3 Basketball
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Yin, Li, Yeung, Calvin, Hu, Qingrui, Ichikawa, Jun, Azechi, Hirotsugu, Takahashi, Susumu, and Fujii, Keisuke
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Multi-object tracking (MOT) is crucial for various multi-agent analyses such as evaluating team sports tactics and player movements and performance. While pedestrian tracking has advanced with Tracking-by-Detection MOT, team sports like basketball pose unique challenges. These challenges include players' unpredictable movements, frequent close interactions, and visual similarities that complicate pose labeling and lead to significant occlusions, frequent ID switches, and high manual annotation costs. To address these challenges, we propose a novel pose-based virtual marker (VM) MOT method for team sports, named Sports-vmTracking. This method builds on the vmTracking approach developed for multi-animal tracking with active learning. First, we constructed a 3x3 basketball pose dataset for VMs and applied active learning to enhance model performance in generating VMs. Then, we overlaid the VMs on video to identify players, extract their poses with unique IDs, and convert these into bounding boxes for comparison with automated MOT methods. Using our 3x3 basketball dataset, we demonstrated that our VM configuration has been highly effective, and reduced the need for manual corrections and labeling during pose model training while maintaining high accuracy. Our approach achieved an average HOTA score of 72.3%, over 10 points higher than other state-of-the-art methods without VM, and resulted in 0 ID switches. Beyond improving performance in handling occlusions and minimizing ID switches, our framework could substantially increase the time and cost efficiency compared to traditional manual annotation.
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- 2024
5. Co-Making the Future: Crafting Tomorrow with Insights and Perspectives from the China-U.S. Young Maker Competition
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Wei Liu, Zhiyong Fu, Yancong Zhu, Yin Li, Yuanbo Sun, Xinhui Hong, Yanru Li, and Min Liu
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This research paper investigates the intersection of the maker movement and educational innovation, using the China-U.S. Young Maker Competition as a foundational example. It examines how maker education, fueled by hands-on learning and a curiosity-driven approach, can evolve and influence. The study explores the roles and impacts of Human-Computer Interaction (HCI), Design-Driven Innovation (DDI), and Cross-Cultural Perspectives (CCP) within maker education. It highlights HCI's connection of technology with learning, DDI's focus on user-centered solutions, and the significance of CCP in enhancing cultural collaboration, vital for fostering an innovative and creative future. This paper offers a detailed perspective on the current state and future potential of maker education. It proposes a roadmap for the coming decade, emphasizing collaborative learning and creative endeavors, all set within the engaging environment of the competition.
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- 2024
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6. A combined Quantum Monte Carlo and DFT study of the strain response and magnetic properties of two-dimensional (2D) 1T-VSe$_2$ with charge density wave
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Wines, Daniel, Ibrahim, Akram, Gudibandla, Nishwanth, Adel, Tehseen, Abel, Frank M., Jois, Sharadh, Saritas, Kayahan, Krogel, Jaron T., Yin, Li, Berlijn, Tom, Hanbicki, Aubrey T., Stephen, Gregory M., Friedman, Adam L., Krylyuk, Sergiy, Davydov, Albert, Donovan, Brian, Jamer, Michelle E., Walker, Angela R. Hight, Choudhary, Kamal, Tavazza, Francesca, and Ataca, Can
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Condensed Matter - Materials Science ,Condensed Matter - Strongly Correlated Electrons - Abstract
Two-dimensional (2D) 1T-VSe$_2$ has prompted significant interest due to the discrepancies regarding alleged ferromagnetism (FM) at room temperature, charge density wave (CDW) states and the interplay between the two. We employed a combined Diffusion Monte Carlo (DMC) and density functional theory (DFT) approach to accurately investigate the magnetic properties and response of strain of monolayer 1T-VSe$_2$. Our calculations show the delicate competition between various phases, revealing critical insights into the relationship between their energetic and structural properties. We went on to perform Classical Monte Carlo simulations informed by our DMC and DFT results, and found the magnetic transition temperature ($T_c$) of the undistorted (non-CDW) FM phase to be 228 K and the distorted (CDW) phase to be 68 K. Additionally, we studied the response of biaxial strain on the energetic stability and magnetic properties of various phases of 2D 1T-VSe$_2$ and found that small amounts of strain can enhance the $T_c$, suggesting a promising route for engineering and enhancing magnetic behavior. Finally, we synthesized 1T-VSe$_2$ and performed Raman spectroscopy measurements, which were in close agreement with our calculated results. Our work emphasizes the role of highly accurate DMC methods in advancing the understanding of monolayer 1T-VSe$_2$ and provides a robust framework for future studies of 2D magnetic materials.
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- 2024
7. Exploring control of the emergent exciton insulator state in 1T-TiSe$_2$ monolayer by state-of-the-art theory models
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Tang, Hong, Yin, Li, Csonka, Gábor I., and Ruzsinszky, Adrienn
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Physics - Computational Physics - Abstract
The layered transition metal dichalcogenide 1T-TiSe$_2$ is of great research interest, having intriguing properties of charge density waves (CDW) and superconductivity under doping or pressurizing. The monolayer form of 1T-TiSe$_2$ also shows a CDW with a higher transition temperature T_c than the bulk, indicating a stronger CDW interaction. By using the meta-generalized gradient approximation (metaGGA)-based model Bethe-Salpeter Equation (BSE) and many-body perturbation GW+BSE methods, we calculate the exciton binding energies and electron energy loss spectrum (EELS) for the 1T-TiSe$_2$ monolayer under different in-plane biaxial strains. We find that even without strain the 1T-TiSe$_2$ monolayer can have negative exciton energies at the Brillouin zone boundary point M, with a binding energy larger than the gap. The calculated EELS reinforces this picture, indicating EI (exciton insulator) states in 1T-TiSe$_2$ monolayer even without strain. The Wannier-Mott formula calculations of exciton binding energy corroborate results from GW+BSE. Small compressive strains enhance the EI state, and for tensile strains slightly less than 3%, the EI state in this monolayer persists. At large tensile strains, the material makes a transition to a normal semiconductor. Our results provide important information for understanding the quantum nature of this two-dimensional (2D) material. Our results from the standard G0W0@PBE+SOC+U+BSE approach are not qualitatively different from those of a more computationally efficient metaGGA-based SCAN+SOC+U+mBSE+$f_{xc}^{loc}$ approach that employs a model BSE.
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- 2024
8. The effect of heatwave and cold spell on cardiovascular disease mortality in central China, 2018–2022
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Lv, Ling-Shuang, Yin, Li, Liu, Yuan, Zhou, Chun-Liang, Hu, Ji, An, Ning, Xie, Xian, Zhang, Xing-E, Zhang, Min, and Liu, Xiu-Ying
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- 2025
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9. Genetic identification and characterization of two novel loci for grain arsenic concentration in tetraploid wheat at various field environments
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Zeng, Zhaoyong, Ou, Dandan, Yin, Li, Wu, Yueyi, Huo, Yuanfeng, Xu, Yinggang, Tang, Huaping, Yuan, Shu, Gao, Xuesong, Qin, Yusheng, Ma, Jian, and Chen, Guangdeng
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- 2025
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10. Antibacterial Activity and Mechanism of Pinus pumila (Pall.) Pinecone Essential Oil Against Escherichia coli
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Zhou, Caixue, Dai, Shuxia, Yin, Li, Zhuo, Yu, Zhao, Nannan, Li, Dehai, and Sun, Changyan
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- 2025
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11. Retrospective analysis of autologous bone marrow mesenchymal stem cells as adjuvant therapy in recurrent intrauterine adhesions
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Wang, Yu, Yin, Li-Li, Sun, Xiao-Fei, Yang, Qing, Yu, Yan-Qiu, Rong, Yao-Xing, Chen, Zhe, and Wang, Guang-Wei
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- 2025
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12. Sonothrombolysis Using Microfluidically Produced Microbubbles in a Murine Model of Deep Vein Thrombosis: Sonothrombolysis Using Microfluidically-Produced...
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Xie, Yanjun, Huang, Yi, Stevenson, Hugo C. S., Yin, Li, Zhang, Kaijie, Islam, Zain Husain, Marcum, William Aaron, Johnston, Campbell, Hoyt, Nicholas, Kent, Eric William, Wang, Bowen, and Hossack, John A.
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- 2025
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13. Inside the Working Mechanism of Meta-generalized Gradient Density Functional Approximations: The Example of Quantum Spin-Hall Insulator 1T`-WTe2
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Yin, Li, Tang, Hong, and Ruzsinszky, Adrienn
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Condensed Matter - Materials Science ,Condensed Matter - Other Condensed Matter - Abstract
Quantum spin Hall (QSH) insulators have attracted intensive experimental and theoretical studies due to their beneficial applications in spintronic devices. Density functional theory (DFT) meets challenges when describing the electronic structure of QSH materials. Only the Heyd-Scuseria-Ernzerhof (HSE06) with spin-orbit coupling (SOC) is effective in revealing the band opening in the typical QSH 1T`-WTe2, but with increased computational demands. Here, using DFT, Wannier function simulations, the screened hybrid HSE06 functional, and first-principles-based many body perturbation theory GW, we investigate the sensitive electronic structure in monolayer 1T`-WTe2, with advanced meta-generalized gradient (meta-GGA) density functional approximations. The success of the recent SCAN and r2SCAN meta-GGAs left their predecessor meta-GGA made very simple (MVS) ignored by the scientific community. Largely unnoticed were the increased band gaps of MVS compared to any semilocal approximation including SCAN. We find that the non-empirical MVS approximation yields a positive fundamental band gap, without any help from exact exchange, Hubbard U, or SOC correction. We explain the success of the meta-GGA MVS for the band gap in 1T`-WTe2 by presenting two working mechanisms in meta-GGA approximations. Besides, we point out the difficulty of using G0W0 for 1T`-WTe2. Although the single shot GW correction with an MVS reference yields a smaller band gap than GW with PBE, the G0W0@MVS is still not suitable for simulating 1T`-WTe2, due to its negative band gap. These DFT and beyond DFT results highlight the importance of meta-GGAs and novel construction schemes with enhanced kinetic energy density dependence. The MVS approximation re-appears as an appealing alternative for accurately describing 1T`-WTe2, paving an efficient way for exploring other two-dimensional QSH materials in high-throughput calculations., Comment: 15 pages, 5 figures, and Supplementary Materials
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- 2024
14. A Pathway to Efficient Simulations of Charge Density Waves in Transition Metal Dichalcogenides: A Case Study for TiSe2
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Yin, Li, Tang, Hong, Berlijn, Tom, and Ruzsinszky, Adrienn
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Condensed Matter - Materials Science ,Condensed Matter - Other Condensed Matter - Abstract
Charge density waves (CDWs) in transition metal dichalcogenides are the subject of growing scientific interest due to their rich interplay with exotic phases of matter and their potential technological applications. Here, using density functional theory with advanced meta-generalized gradient approximations (meta-GGAs) and linear response time-dependent density functional theory (TDDFT) with state-of-the-art exchange-correlation kernels, we investigate the electronic, vibrational, and optical properties in 1T-TiSe2 with and without CDW. In both bulk and monolayer TiSe2, the electronic bands and phonon dispersions in either normal (semi-metallic) or CDW (semiconducting) phase are described well via meta-GGAs, which separate the valence and conduction bands just as HSE06 does but with significantly more computational feasibility. Instead of the underestimated gap with standard exchange-correlation approximations and the overestimated gap with screened hybrid functional HSE06, the band gap of the monolayer TiSe2 CDW phase calculated by the meta-GGA MVS (151 meV) is consistent with the angle-resolved photoemission spectroscopy (ARPES) gap of 153 meV measured at 10 K. In addition, the gap of bulk TiSe2 CDW phase reaches 67 meV within the TASK approximation, close to the ARPES gap of 82 meV. Regarding excitations of many-body nature, for bulk TiSe2 in normal and CDW phases, the experimentally observed humps of electron energy loss spectroscopy and plasmon peak are successfully reproduced in TDDFT, without an obvious kernel dependence. To unleash the full scientific and technological potential of CDWs in transition metal dichalcogenides, the chemical doping, heterostructure engineering, and pump-probe techniques are needed. Our study opens the door to simulating these complexities in CDW compounds from first principles by revealing meta-GGAs as an accurate low-cost alternative to HSE06., Comment: 22 pages, 4 figures, Supplementary Materials
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- 2024
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15. A diffusion MRI tractography atlas for concurrent white matter mapping across Eastern and Western populations
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Li, Yijie, Zhang, Wei, Wu, Ye, Yin, Li, Zhu, Ce, Chen, Yuqian, Cetin-Karayumak, Suheyla, Cho, Kang Ik K, Zekelman, Leo R., Rushmore, Jarrett, Rathi, Yogesh, Makris, Nikos, O'Donnell, Lauren J., and Zhang, Fan
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Quantitative Biology - Neurons and Cognition - Abstract
The study of brain differences across Eastern and Western populations provides vital insights for understanding potential cultural and genetic influences on cognition and mental health. Diffusion MRI (dMRI) tractography is an important tool in assessing white matter (WM) connectivity and brain tissue microstructure across different populations. However, a comprehensive investigation into WM fiber tracts between Eastern and Western populations is challenged due to the lack of a cross-population WM atlas and the large site-specific variability of dMRI data. This study presents a dMRI tractography atlas, namely the East-West WM Atlas, for concurrent WM mapping between Eastern and Western populations and creates a large, harmonized dMRI dataset (n=306) based on the Human Connectome Project and the Chinese Human Connectome Project. The curated WM atlas, as well as subject-specific data including the harmonized dMRI data, the whole brain tractography data, and parcellated WM fiber tracts and their diffusion measures, are publicly released. This resource is a valuable addition to facilitating the exploration of brain commonalities and differences across diverse cultural backgrounds.
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- 2024
16. Does green innovation facilitate buyer firms’ attainment of trade credit from suppliers? A signalling theory perspective
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Shao, Jinan, Yin, Li, Dai, Jing, and Shangguan, Wuyue
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- 2025
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17. Tangential Maneuvering Target Detection for Airborne Cognitive Radar.
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Jingyi Xiong, Guolong Cui, Tao Fan, Yin Li, Xianxiang Yu, Lingjiang Kong, and Xiaobo Yang
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- 2025
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18. iTRAQ proteomics analysis of placental tissue with gestational diabetes mellitus
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Yin, Xiaoping, Yang, Fei, Lin, Jin, Hu, Qin, Tang, Xiaoxiao, Yin, Li, Yan, Xi, Zhuang, Hongbin, Ma, Guanwei, Shen, Liming, and Zhao, Danqing
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- 2024
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19. A volume-adaptive mesh-free model for FSI Simulation of cavitation erosion with bubble collapse
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Zhang, Qiang, Liu, Xin, Dong, Xiangwei, Yin, Li, and Cheng, Zhou
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- 2024
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20. Research on the knee region of cosmic ray by using a novel type of electron-neutron detector array
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Li, Bing-Bing, Ma, Xin-Hua, Cui, Shu-Wang, Chen, Hao-Kun, Chen, Tian-Lu, Danzengluobu, Gao, Wei, Hu, Hai-Bing, Kuleshov, Denis, Kurinov, Kirill, Liu, Hu, Liu, Mao-Yuan, Liu, Ye, Peng, Da-Yu, Qi, Yao-Hui, Shchegolev, Oleg, Stenkin, Yuri, Yin, Li-Qiao, Zhang, Heng-Yu, and Zhang, Liang-Wei
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Instrumentation and Detectors - Abstract
By accurately measuring composition and energy spectrum of cosmic ray, the origin problem of so called "keen" region (energy > 1 PeV) can be solved. However, up to the present, the results of the spectrum in the knee region obtained by several previous experiments have shown obvious differences, so they cannot give effective evidence for judging the theoretical models on the origin of the knee. Recently, the Large High Altitude Air Shower Observatory (LHAASO) has reported several major breakthroughs and important results in astro-particle physics field. Relying on its advantages of wide-sky survey, high altitude location and large area detector arrays, the research content of LHAASO experiment mainly includes ultra high-energy gamma-ray astronomy, measurement of cosmic ray spectra in the knee region, searching for dark matter and new phenomena of particle physics at higher energy. The electron and Thermal Neutron detector (EN-Detector) is a new scintillator detector which applies thermal neutron detection technology to measure cosmic ray extensive air shower (EAS). This technology is an extension of LHAASO. The EN-Detector Array (ENDA) can highly efficiently measure thermal neutrons generated by secondary hadrons so called "skeleton" of EAS. In this paper, we perform the optimization of ENDA configuration, and obtain expectations on the ENDA results, including thermal neutron distribution, trigger efficiency and capability of cosmic ray composition separation. The obtained real data results are consistent with those by the Monte Carlo simulation.
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- 2024
21. Hypofractionated radiotherapy combined with a PD-1 inhibitor, granulocyte macrophage-colony stimulating factor, and thymosin-α1 in advanced metastatic solid tumors: a multicenter Phase II clinical trial
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Yu, Jiamin, Yin, Li, Guo, Wenjie, Wang, Qiang, Liu, Juying, Zhang, Lansheng, Ye, Hongxun, Xia, Jianhong, Xia, Youyou, Wu, Jianfeng, Wang, Wanwei, Yang, Yanguang, Zong, Dan, He, Xia, Wang, Lijun, and Jiang, Hong
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- 2025
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22. Ultra-high quality factor and ultra-high accelerating gradient achievements in a 1.3 GHz continuous wave cryomodule: Ultra-high-quality factor and ultra-high...
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Chen, Jin-Fang, Zong, Yue, Pu, Xiao-Yun, Xiang, Sheng-Wang, Xing, Shuai, Li, Zheng, Liu, Xu-Ming, Zhai, Yan-Fei, Wu, Xiao-Wei, He, Yong-Zhou, Gong, Ling-Ling, Zhang, Ji-Dong, Cao, Shan-Shan, Fang, Wen-Ding, Zhang, Bin-Tuan, Xu, Kai, Yu, Yi-Bo, Chen, Guang-Hua, Lu, Li-Jun, Huang, Ya-Wei, Zhao, Shen-Jie, Hou, Hong-Tao, Ma, Zhen-Yu, Zhao, Ye-Liang, Zheng, Xiang, Sun, Jiu-Ce, Sun, Sen, Jiang, Zhi-Qiang, Zhao, Yu-Bin, Zhang, Meng, Yan, Ying-Bing, Liu, Yi-Yong, Gu, Qiang, Liu, Bo, Yin, Li-Xin, Wang, Dong, Deng, Hai-Xiao, and Zhao, Zhen-Tang
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- 2025
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23. Development and validation of the systemic nutrition/inflammation index for improving perioperative management of non-small cell lung cancer
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Peiyu Wang, Shaodong Wang, Qi Huang, Xiankai Chen, Yongkui Yu, Ruixiang Zhang, Mantang Qiu, Yin Li, Xue Pan, Xiao Li, and Xiangnan Li
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Non-small cell lung cancer ,Nutrition ,Inflammation ,Perioperative management ,Medicine - Abstract
Abstract Background Systemic nutrition and inflammation status is recognized for its influence on cancer survival, yet its role in perioperative outcomes remains poorly defined. This study aimed to refine the assessment of systemic nutrition and inflammation status in non-small cell lung cancer (NSCLC) patients and to elucidate its impact on perioperative outcomes. Methods All patients underwent video-assisted thoracoscopic lobectomy, with their nutrition and inflammation status assessed based on preoperative blood tests. The development cohort, comprising 1497 NSCLC patients from two centers, evaluated the predictive value of systemic nutrition/inflammation indicators for perioperative endpoints and formulated the systemic nutrition-inflammation index (SNII). The tertiles of SNII were used to classify the nutrition/inflammation risk as high ( 23.1). An external validation cohort of 505 NSCLC patients was utilized to confirm the effectiveness of SNII in guiding perioperative management. Results In the development cohort, the SNII tool, calculated as the product of total cholesterol and total lymphocytes divided by total monocytes, demonstrated a stronger correlation with perioperative outcomes compared to 11 existing nutrition/inflammation indicators. A low SNII score, indicative of high nutrition/inflammation risk, was independently predictive of increased complication incidence and severity, as well as prolonged chest tube duration and hospital stay. These findings were corroborated in the validation cohort. Upon combining the development and validation cohorts, the superiority of the SNII in predicting perioperative outcomes was further confirmed over the existing nutrition/inflammation indicators. Additionally, comprehensive subgroup analyses revealed the moderately variable efficacy of SNII across different patient populations. Conclusions This study developed and validated the SNII as a tool for identifying systemic nutrition and inflammation risk, which can enhance perioperative managements in NSCLC patients. Patients identified with high risk may benefit from prehabilitation and intensive treatments, highlighting the need for further research.
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- 2025
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24. SPAGRM: effectively controlling for sample relatedness in large-scale genome-wide association studies of longitudinal traits
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He Xu, Yuzhuo Ma, Lin-lin Xu, Yin Li, Yufei Liu, Ying Li, Xu-jie Zhou, Wei Zhou, Seunggeun Lee, Peipei Zhang, Weihua Yue, and Wenjian Bi
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Science - Abstract
Abstract Sample relatedness is a major confounder in genome-wide association studies (GWAS), potentially leading to inflated type I error rates if not appropriately controlled. A common strategy is to incorporate a random effect related to genetic relatedness matrix (GRM) into regression models. However, this approach is challenging for large-scale GWAS of complex traits, such as longitudinal traits. Here we propose a scalable and accurate analysis framework, SPAGRM, which controls for sample relatedness via a precise approximation of the joint distribution of genotypes. SPAGRM can utilize GRM-free models and thus is applicable to various trait types and statistical methods, including linear mixed models and generalized estimation equations for longitudinal traits. A hybrid strategy incorporating saddlepoint approximation greatly increases the accuracy to analyze low-frequency and rare genetic variants, especially in unbalanced phenotypic distributions. We also introduce SPAGRM(CCT) to aggregate the results following different models via Cauchy combination test. Extensive simulations and real data analyses demonstrated that SPAGRM maintains well-controlled type I error rates and SPAGRM(CCT) can serve as a broadly effective method. Applying SPAGRM to 79 longitudinal traits extracted from UK Biobank primary care data, we identified 7,463 genetic loci, making a pioneering attempt to conduct GWAS for these traits as longitudinal traits.
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- 2025
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25. Single-cell RNA sequencing and spatial transcriptomics of esophageal squamous cell carcinoma with lymph node metastases
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Wei Guo, Bolun Zhou, Lizhou Dou, Lei Guo, Yong Li, Jianjun Qin, Zhen Wang, Qilin Huai, Xuemin Xue, Yin Li, Jianming Ying, Qi Xue, Shugeng Gao, and Jie He
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Medicine ,Biochemistry ,QD415-436 - Abstract
Abstract Esophageal squamous cell carcinoma (ESCC) patients often face a grim prognosis due to lymph node metastasis. However, a comprehensive understanding of the cellular and molecular characteristics of metastatic lymph nodes in ESCC remains elusive. In this study involving 12 metastatic ESCC patients, we employed single-cell sequencing, spatial transcriptomics (ST), and multiplex immunohistochemistry (mIHC) to explore the spatial and molecular attributes of primary tumor samples, adjacent tissues, metastatic and non-metastatic lymph nodes. The analysis of 161,333 cells revealed specific subclusters of epithelial cells that were significantly enriched in metastatic lymph nodes, suggesting pro-metastatic characteristics. Furthermore, stromal cells in the tumor microenvironment, including MMP3+IL24+ fibroblasts, APLN+ endothelial cells, and CXCL12+ pericytes, were implicated in ESCC metastasis through angiogenesis, collagen production, and inflammatory responses. Exhausted CD8+ T cells in a cycling status were notably prevalent in metastatic lymph nodes, indicating their potential role in facilitating metastasis. We identified distinct cell-cell communication networks and specific ligand-receptor pathways. Our findings were validated through a spatial transcriptome map and mIHC. This study enhances our comprehension of the cellular and molecular aspects of metastatic lymph nodes in ESCC patients, offering potential insights into novel therapeutic strategies for these individuals.
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- 2025
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26. Multimodality imaging features of systemic amyloidosis: a case report
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Yi Yu, Zhi-Chao Li, Guang-Yin Li, Ting Wang, and Yi-Gang Li
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Multimodality imaging ,Myocardial amyloidosis ,Systemic ,Light chain ,Case report ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Systemic light chain amyloidosis is a rare and debilitating disease, especially for which initially presented with digestive tract involvement. Myocardial amyloidosis is highly aggressive with generally poor prognosis and often resulted in missed diagnosis or misdiagnosis with routine examination tools. Multimodality imaging play an important role in diagnosing the amyloidosis effect on multiple organs. Chemoradiotherapy is the mainstay of treatment. Case presentation This article presents a rare case of systemic light chain amyloidosis, initially with gastrointestinal symptoms, in a 68-year-old male. He was hospitalized with diarrhea for one year and a half, dysphagia for 4 months, but he had no dyspnea. The transthoracic echocardiogram revealed myocardial hypertrophy of the left ventricle, the hypertrophic heart muscle echoed like "ground glass". The left ventricular ejection fraction (LVEF) detected by Simpson method was 51% and global longitudinal strain (GLS) was -9.00%. But cardiac magnetic resonance showed the patient without gadolinium delayed enhancement. The urinary protein series quantification and the serum free light chain levels were all increased. While the ratio of free κ and free λ was decreased. Hence, the abdominal fat biopsy of the patient was amyloidosis by electronic and immunoelectron microscopy. Organs involved include heart, kidneys, gastrointestinal tract and nervous system, stage III of mayo 2012 model. The patient was treated with Dara-BCD chemotherapy. This case underscores the diagnostic complexity, emphasizing the need for early identification given the grim prognosis associated with systemic AL amyloidosis requiring clinical data, detailed imaging, and histopathological insights. After discharge, the patient became better and followed up in the outpatient. Conclusions Systemic light chain amyloidosis can easily be missed diagnosis or misdiagnosis in its early stages, losing the opportunity for initiating earlier treatments to improve potential patient outcomes. Despite advancements in diagnostic biomarkers, this case highlights the potential for missed diagnosis with standard CMR imaging when gadolinium enhancement is negative. The utility of echocardiographic features such as reduced GLS and abnormal ECG findings emerges as critical in early identification of myocardial amyloidosis. The correct diagnosis of this case relied on the comprehensive utilization of multimodal imaging techniques including biopsy.
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- 2025
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27. A global analysis of dairy consumption and incident cardiovascular disease
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Pan Zhuang, Xiaohui Liu, Yin Li, Yang Ao, Yuqi Wu, Hao Ye, Xuzhi Wan, Lange Zhang, Denghui Meng, Yimei Tian, Xiaomei Yu, Fan Zhang, Anli Wang, Yu Zhang, and Jingjing Jiao
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Science - Abstract
Abstract The role of dairy products in cardiovascular disease (CVD) prevention remains controversial. This study investigates the association between dairy consumption and CVD incidence using data from the China Kadoorie Biobank and the UK Biobank, complemented by an updated meta-analysis. Among Chinese participants, regular dairy consumption (primarily whole milk) is associated with a 9% increased risk of coronary heart disease (CHD) and a 6% reduced risk of stroke compared to non-consumers. Among British participants, total dairy consumption is linked to lower risks of CVD, CHD, and ischemic stroke, with cheese and semi-skimmed/skimmed milk contributing to reduced CVD risk. Meta-analysis reveals that total dairy consumption is associated with a 3.7% reduced risk of CVD and a 6% reduced risk of stroke. Notably, inverse associations with CVD incidence are observed for cheese and low-fat dairy products. Current evidence suggests that dairy consumption, particularly cheese, may have protective effects against CVD and stroke.
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- 2025
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28. The Laboratory Skills Contest: An Activity to Improve and Evaluate Students' Laboratory Practice through the Determination of Water Hardness
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Jixin Wang, Wenshui Zhou, Yin Li, Mei Yu, and Zheng Zhu
- Abstract
By hosting a college students' laboratory skills contest, we provide an interesting activity for students to cultivate good laboratory practices and thereby improve their laboratory skills. The substance of this contest is the detection of the hardness of water, which involves numerous laboratory skills such as solution preparation, weight by difference mass measurements, glassware calibration, pipetting, quantitative transfer, titration, data processing, and cleaning up the laboratory. Initially, due to limited class time, students are unable to master and practice effectively the skills taught in class. Many students wanted to practice these skills at a time after class, and these skills were subsequently redesigned and organized as an extracurricular activity to involve more students. Skills are assigned to students depending on their year: freshmen act as lab assistants to prepare solutions, such as EDTA-2Na, hydrochloric acid, ammonia, and indicators. This is a simple skill that aims to build confidence in mastering chemical experiments, as such experiments are rarely conducted in high school. Sophomores conducted experiments as contestants. Through the contest, students' laboratory skills are improved and evaluated. The task for senior students is to provide guidance to freshmen and sophomores, identify their mistakes, and demonstrate the correct operations. All of the students collaborated to complete this activity.
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- 2024
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29. HyperMix: Out-of-Distribution Detection and Classification in Few-Shot Settings
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Mehta, Nikhil, Liang, Kevin J, Huang, Jing, Chu, Fu-Jen, Yin, Li, and Hassner, Tal
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Computer Science - Machine Learning ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Out-of-distribution (OOD) detection is an important topic for real-world machine learning systems, but settings with limited in-distribution samples have been underexplored. Such few-shot OOD settings are challenging, as models have scarce opportunities to learn the data distribution before being tasked with identifying OOD samples. Indeed, we demonstrate that recent state-of-the-art OOD methods fail to outperform simple baselines in the few-shot setting. We thus propose a hypernetwork framework called HyperMix, using Mixup on the generated classifier parameters, as well as a natural out-of-episode outlier exposure technique that does not require an additional outlier dataset. We conduct experiments on CIFAR-FS and MiniImageNet, significantly outperforming other OOD methods in the few-shot regime.
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- 2023
30. Synthesis of Temporally-Robust Policies for Signal Temporal Logic Tasks using Reinforcement Learning
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Wang, Siqi, Li, Shaoyuan, Yin, Li, and Yin, Xiang
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Electrical Engineering and Systems Science - Systems and Control - Abstract
This paper investigates the problem of designing control policies that satisfy high-level specifications described by signal temporal logic (STL) in unknown, stochastic environments. While many existing works concentrate on optimizing the spatial robustness of a system, our work takes a step further by also considering temporal robustness as a critical metric to quantify the tolerance of time uncertainty in STL. To this end, we formulate two relevant control objectives to enhance the temporal robustness of the synthesized policies. The first objective is to maximize the probability of being temporally robust for a given threshold. The second objective is to maximize the worst-case spatial robustness value within a bounded time shift. We use reinforcement learning to solve both control synthesis problems for unknown systems. Specifically, we approximate both control objectives in a way that enables us to apply the standard Q-learning algorithm. Theoretical bounds in terms of the approximations are also derived. We present case studies to demonstrate the feasibility of our approach., Comment: Accepted to ICRA 2024
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- 2023
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31. Optoelectronic properties of bent two-dimensional materials from first-principles methods combined with machine learning
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Ruzsinszky, Adrienn, Tang, Hong, Neupane, Santosh, Yin, Li, Yan, Qimin, Breslin, Jason, Nepal, Niraj, Kaplan, Aaron, Neupane, Bimal, Adhikari, Santosh, and Ruan, Shiqi
- Published
- 2024
32. Dramatic improvements in outcome following pancreatoduodenectomy for pancreatic and periampullary cancers
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Xu, Hui, Bretthauer, Michael, Fang, Fang, Ye, Weimin, Yin, Li, and Adami, Hans-Olov
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- 2024
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33. Effect of Annealing Temperature on the Microstructure and Corrosion Resistance of Atmospheric Plasma-Sprayed FeCoCrNiMo0.2 Coatings
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Zhang, Shitao, Wang, Haoran, Jiang, Chunxia, Zhao, Yuantao, Li, Wenge, Liu, Yanbo, Yin, Li, Zhang, Jing, Pan, Zhengyang, and Sun, Boyang
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- 2024
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34. Selenium Deficiency Can Promote the Expression of VEGF and Inflammatory Factors in Cartilage Differentiation and Mediates Cartilage Injury
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Meng, Xiang, Meng, Xiumei, He, Zeju, Yuan, Ye, Fan, Yong, Yin, Li, Tong, Yu, Hong, Zheping, Zhu, Senbo, Zhang, Qiong, and Bi, Qing
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- 2024
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35. Disrupted small-world white matter networks in patients with major depression and recent suicide plans or attempts
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Li, Huiru, Zhang, Huawei, Qin, Kun, Yin, Li, Chen, Ziqi, Zhang, Feifei, Wu, Baolin, Chen, Taolin, Sweeney, John A., Gong, Qiyong, and Jia, Zhiyun
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- 2024
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36. Ginsenoside Rd Induces Differentiation of Myeloid Leukemia Cells via Regulating ERK/GSK-3β Signaling Pathway
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Jiang, Yu-xia, Zhao, Yan-na, Yu, Xiao-ling, and Yin, Li-ming
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- 2024
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37. Integrated analysis of metabolome, lipidome, and gut microbiome reveals the immunomodulation of Astragali radix in healthy human subjects
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Wan-Yu Gui, Jun-Gang Yin, Jian-Cheng Liao, Hui-Zhi Luo, Qing You, Jia-Hui Gong, Jie Xiang, Jian-Dong Zou, and Chang-Yin Li
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Astragali radix ,Immunomodulation ,Lipidomics ,Metabolomics ,Gut microbiota ,Other systems of medicine ,RZ201-999 - Abstract
Abstract Background As a typical medicinal food homology species, Chinese herbal medicine Astragali radix (AR) has been widely used to regulate the human immune system worldwide. However, the human immunomodulation of AR and its corresponding mechanisms remain unclear. Methods First, following a fortnight successive AR administration, the changes in immune cytokines and immune cells from 20 healthy human subjects were used as immune indicators to characterize the immunomodulatory effects of AR. Subsequently, ultra-high-performance liquid chromatography coupled with quadrupole-time-of-flight mass spectrometry (UHPLC-Q-TOF/MS) based lipidomics and metabolomics analysis was performed on human serum, urine, and feces samples to investigate the changes in metabolic profiles. Then, 16S rRNA gene sequencing of feces samples was adopted for the changes of human gut microbiota. Finally, correlation analysis was conducted on the gut microbiome, metabolome/lipidome data, and immune indicators. Results AR displayed good safety in clinical use and posed a minor impact on gut microbiota major genera, global metabolic profiles, and immune cells. Meanwhile, AR could significantly up-regulate anti-inflammatory cytokines, down-regulate serum creatinine and pro-inflammatory cytokines, promote the anabolism of arginine, glycerolipid, sphingolipid, and purine, and the catabolism of phenylalanine and glycerophospholipid. Moreover, these AR-induced changes were closely correlated with significantly decreased Granulicatella, slightly higher Bifidobacterium, Ruminococcus, and Subdoligranulum, and slightly lower Blautia. Conclusion The study clearly demonstrated that AR could modulate the human immune, by modifying the metabolism of amino acids, lipids, and purines in a microbiota-related way. Trial registration ChiCTR, ChiCTR2100054765. Registered 26 December 2021-Prospectively registered, https://www.chictr.org.cn/historyversionpub.html?regno=ChiCTR2100054765
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- 2024
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38. Design and implementation of a novel wideband dual‐polarised transmitarray antenna based on tightly coupled cross dipole cells
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Yong Heng Zhao, Yin Li, Li Jun Jiang, and Ping Li
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antenna arrays ,aperture antennas ,transmitting antennas ,Telecommunication ,TK5101-6720 ,Electricity and magnetism ,QC501-766 - Abstract
Abstract A novel broadband dual‐polarised transmitarray antenna (TA) utilising tightly coupled cross dipole cells is proposed in this work. The transmitarray cell using the tightly coupling wideband principle comprises two radiation patches designed as two orthogonal planar dipoles with four interdigital capacitors, two meandered parallel plate transmission lines, and a ground. Each cell has a square shape and a dimension of approximately 0.28 λc where λc is the wavelength at central frequency 5.5 GHz. The transmitarray cell can achieve 475° phase shift at central frequency and transmission magnitude better than −2.5 dB within the working band. To verify the feasibility of this design, a tightly coupled dual‐polarised transmitarray antenna (TCDPTA) is modelled and manufactured. The transmitarray aperture size is approximately 4.1 λc × 4.1 λc. The simulation and measurement illustrate that the TCDPTA has stable and distortion‐free main beams whose side lobe levels are generally below −10 dB in the band of 3.0–8.0 GHz. The measured gain at central frequency is 16.2 dBi and peak gain is 19 dBi at 7.5 GHz. The working bandwidth is 90.9% and 3 dB gain bandwidth is 66.7%. The measured cross‐polarisation levels are below −15 dB at axial direction. This TA has potential applications for high‐date‐rate communication and high‐revolution radar imaging systems at C‐band.
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- 2024
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39. Altered neurovascular coupling and structure-function coupling in Moyamoya disease affect postoperative collateral formation
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Lingji Jin, Junwen Hu, Yin Li, Yuhan Zhu, Xuchao He, Ruiliang Bai, and Lin Wang
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Cerebral blood flow ,Functional connectivity ,Structural connectivity ,Graph theory ,Moyamoya disease ,Collateral formation ,Medicine ,Science - Abstract
Abstract Chronic ischemia in moyamoya disease (MMD) impaired white matter microstructure and neural functional network. However, the coupling between cerebral blood flow (CBF) and functional connectivity and the association between structural and functional network are largely unknown. 38 MMD patients and 20 sex/age-matched healthy controls (HC) were included for T1-weighted imaging, arterial spin labeling imaging, resting-state functional MRI and diffusion tensor imaging. All patients had preoperative and postoperative digital subtraction angiography. Upon constructing the structural connectivity (SC) and functional connectivity (FC) networks, the SC-FC coupling was calculated. After obtaining the graph theoretical parameters, neurovascular coupling represented the spatial correlation between node degree centrality (DC) of functional networks and CBF. The CBF-DC coupling and SC-FC coupling were compared between MMD and HC groups. We further analyzed the correlation between coupling indexes and cognitive scores, as well as postoperative collateral formation. Compared with HC, CBF-DC coupling was decreased in MMD (p = 0.021), especially in the parietal lobe (p = 0.047). SC-FC coupling in MMD decreased in frontal, occipital, and subcortical regions. Cognitive scores were correlated with the CBF-DC coupling in frontal lobes (r = 0.394, p = 0.029) and SC-FC coupling (r = 0.397, p = 0.027). The CBF-DC coupling of patients with good postoperative collateral formation was higher (p = 0.041). Overall, neurovascular decoupling and structure-functional decoupling at the cortical level may be the underlying neuropathological mechanisms of MMD.
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- 2024
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40. Single-cell transcriptome analysis of stem cells from human exfoliated deciduous teeth investigating functional heterogeneity in immunomodulation
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Yin Li, Guangyuan Song, Yu Jiang, Haitao Zhao, Yizhun Zhu, Shanshan Song, Lulu Wang, and Xueying Wu
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Stem cells from human exfoliated deciduous teeth ,Immunomodulatory functions ,Heterogeneity ,Single‐cell RNA sequencing ,Medicine ,Science - Abstract
Abstract Mesenchymal stem cells (MSCs) have been widely used in the treatment of various inflammatory diseases. The inadequate understanding of MSCs and their heterogeneity can impact the immune environment, which may be the cause of the good outcomes of MSCs-based therapy that cannot always be achieved. Recently, stem cells from human exfoliated deciduous teeth (SHED) showed great potential in inflammatory and autoimmune diseases due to their immature properties compared with MSCs. In our study, single-cell RNA sequencing (scRNA-seq) revealed that SHED in a low differentiation state (S7) exhibited the powerful ability to recruit multiple immune cells. In contrast, SHED in a relatively high differentiation state (S1) may hold a solid ability to secret many factors with paracrine signaling capacity. The analysis result shows that SHED has more robust immunomodulatory properties than human bone marrow-derived mesenchymal stem cells (hBMSCs) or human umbilical cord-derived mesenchymal stem cells (hUCMSCs). When co-cultured with PBMCs, SHED can enhance the proliferation of Treg and down-regulate TNF-α in vitro. SHED may have some advantages in the treatment of inflammatory and autoimmune diseases.
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- 2024
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41. PATL2 mutations affect human oocyte maternal mRNA homeostasis and protein interactions in cell cycle regulation
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Yin-Li Zhang, Zhanhong Hu, Huifang Jiang, Jiamin Jin, Yan Zhou, Mengru Lai, Peipei Ren, Siya Liu, Ying-Yi Zhang, Yan Rong, Wei Zheng, Shen Zhang, Xiaomei Tong, and Songying Zhang
- Subjects
PATL2 mutation ,TUT7 ,CDC23 ,mRNA storage ,mRNA decay ,Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 ,Biochemistry ,QD415-436 - Abstract
Abstract Background Oocyte maturation defect (OMD) and early embryonic arrest result in female infertility. Previous studies have linked biallelic mutations in the PATL2 gene to OMD, yet the underlying mechanism remains largely unknown. Results This study uncovers three novel mutations (c.1201G > T, c.1284delA and c.1613 + 2_1613 + 3insGT) and three reported mutations (c.1204 C > T, c.1271T > C, c.223 − 14_223-2delCCCTCCTGTTCCA) in the PATL2 gene across five unrelated individuals exhibiting OMD, oocyte death, and early embryonic arrest. RNA sequencing revealed that PATL2 mutations decreased mRNA storage in human germinal vesicle (GV) oocytes and impeded mRNA decay during maturation and in early embryos. We demonstrate that PATL2 interacts with CPEB1 and TUT7 in human oocytes to maintain mRNA homeostasis. Additionally, we observed a reduction in CCNB1 and CCNE1 mRNA levels in PATL2-mutant GV oocytes, which may be linked to GV arrest. Employing both wild-type and mutated PATL2V401F/R402W variants, we characterized the protein interactome of PATL2, identifying disruptions of PATL2V401F/R402W variants predominantly affecting cell cycle-related proteins, including CDC23, APC1 and MAD2L1. PATL2’s interaction with and stabilization of CDC23 in oocytes may elucidate the mechanisms behind the mutation-induced MI arrest. PALT2 is required for the efficient mRNA translation and it maintains the protein level of CDC23, APC1 and MAD2L1 in mouse GV oocyte. Conclusion PATL2 plays a critical role in regulating mRNA accumulation and decay in human oocytes, potentially through interactions with CPEB1 and TUT7, respectively. Mutations in PATL2 lead to oocyte meiosis defects by affecting the mRNA accumulation, mRNA translation, and direct binding to and stabilizing proteins related to cell cycle regulation, such as CCNB1 and CDC23. This study expands the mutational spectrum of PATL2 and provides new insights into the molecular mechanisms underlying PATL2 mutation-associated oocyte maturation disorders.
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- 2024
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42. In vivo gene editing of T-cells in lymph nodes for enhanced cancer immunotherapy
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Jin Qu, Yuan Wang, Chuxiao Xiong, Mingxue Wang, Xingdao He, Weibin Jia, Cheuk Yin Li, Tianlong Zhang, Zixun Wang, Wei Li, Becki Yi Kuang, and Peng Shi
- Subjects
Science - Abstract
Abstract Immune checkpoint blockade (ICB) therapy, while promising for cancer treatment, faces challenges like unexpected side effects and limited objective responses. Here, we develop an in vivo gene-editing strategy for improving ICB cancer therapy in a lastingly effective manner. The approach uses a conductive hydrogel-based electroporation system to enable nucleofection of programmed cell death protein 1 (PD1) targeted CRISPR-Cas9 DNAs into T-cells directly within the lymph nodes, and subsequently produces PD1-deficient T-cells to combat tumor growth, metastasis and recurrence in different melanoma models in mice. Following in vivo gene editing, animals show enhanced cellular and humoral immune responses along with multi-fold increases of effector T-cells infiltration to the solid tumors, preventing tumor recurrence and prolonging their survival. These findings provide a proof-of-concept for direct in vivo T-cell engineering via localized gene-editing for enhanced cancer immunotherapy, and also unlock the possibilities of using this method to treat more complex human diseases.
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- 2024
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43. Spatio-Temporal Evolution Characteristics and Driving Mechanism of Regional Main Functional Area in the Pearl River Basin
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Wei Wei, Duan Yunsheng, Yin Li, Bo Liming, and Xia Junnan
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national main functional area planning ,territorial and spatial planning ,"three types of space ,evolution characteristics ,driving mechanisms ,pearl river basin ,Geography (General) ,G1-922 - Abstract
Urban, agricultural, and ecological spaces, collectively referred to as the "three types of space," are central elements in China's Territorial and Spatial Planning reforms. These spaces are crucial in bridging the National Main Functional Area Planning and regional coordinated development strategies at a higher level and in guiding land-use control at a lower level. The Pearl River Basin is one of China's most important economic development regions. This basin serves as a crucial region for the case study of evolution of the "three types of space." Understanding this evolution is critical for aligning regional land use with national strategic objectives and optimizing the coordinated development of these spatial elements. Using the National Main Functional Area Planning strategy as a starting point, this study applied a cross-conversion matrix and a multiscale geographically weighted regression model to analyze the evolution characteristics and driving mechanisms of the "three types of spaces" in the Pearl River Basin from 1990 to 2020. Three main results were obtained. First, over the past 30 years, urban space in the Pearl River Basin has expanded considerably, ecological space has slightly increased, but agricultural space has significantly decreased, with marked spatial differences in the evolution of the "three types of spaces" across the upper, middle, and lower reaches of the basin. Agricultural space has fully decreased across all reaches, converting to urban space in the lower reaches and reverting to ecological space in the upper and middle reaches. Second, within different national functional zones, urban space growth is most pronounced in urbanized areas, ecological space recovery is significant in ecological functional zones, and agricultural space has remarkably decreased in major agricultural production areas. Third, the driving factors for the different evolution directions of the "three types of spaces" in the Pearl River Basin vary. Industrial development has significantly driven the expansion of urban spaces, whereas ecological protection policies have effectively promoted the restoration of ecological spaces in key ecological areas. These findings effectively reveal the land-use evolution process in China's socioeconomic development regions over the past 40 years, highlight the risks and influencing factors of rapid urban space development and ecological space threats, and provide an important reference for optimizing land-use patterns in similar key regions of China.
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- 2024
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44. Typical morphological characteristics of the immunohistochemical subtypes of pituitary microadenomas: a dual center study
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Li Zhang, Shuai Yan, Shen-ke Xie, Yi-tong Wei, Hua-peng Liu, Yin Li, Hai-bo Wu, Hai-liang Wang, and Peng-fei Xu
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diagnosis ,immunohistochemistry ,mri ,pituitary gland ,pituitary microadenoma ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Purpose: This study aimed to investigate the relationship between magnetic resonance image (MRI) features and the immunohistochemical subtypes of pituitary microadenomas (PMAs) characterized by location and growth pattern. Materials and methods: A double-center, retrospective review of MRI characteristics was conducted in 57 PMA cases recorded from February 2014 to September 2023, identified based on the 2017 World Health Organization classification of pituitary gland tumors. The geometric center of the tumor was defined, and the possibility of PMA vertical or lateral growth patterns was evaluated according to the ratio of maximum diameter between the X and Y axes. Results: Among the PMAs, somatotroph adenomas (STAs) significantly frequented the lateral-anteroinferior portion of the pituitary gland (P = 0.036). Lactotroph adenomas (LTAs) showed a significant locational preference for the lateral-posteroinferior portion (P = 0.037), and gonadotroph adenomas (GTAs) were predominantly located in the central-anteroinferior portion (P = 0.022). Furthermore, PMAs in the suprasellar portion exhibited vertical extension with statistical significance (P = 0.0). Conclusion: In our cohort, micro-STAs were predominantly located in the lateral-anteroinferior portion of the pituitary gland, micro-LTAs in the lateral-posteroinferior portion, and micro-GTAs in the central-anteroinferior portion. The growth pattern of PMAs was highly correlated with their vertical position instead of their immunohistochemical subtypes. Therefore, MRI shows potential in differentiating partial PMA subgroups, especially cases within the silent groups.
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- 2024
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45. Molecular mechanism of hypoxia and alpha-ketoglutaric acid on collagen expression in scleral fibroblasts
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Yun Sun, Zhuo-Zheng Li, Jing Yang, Ya-Ru Sha, Xin-Yu Hou, Hong Fu, Jia-Yin Li, Shu-Chang Bai, Yong-Fang Xie, and Guo-Hui Wang
- Subjects
sclera ,scleral collagen expression ,hypoxia ,alpha-ketoglutaric acid ,myopia ,Ophthalmology ,RE1-994 - Abstract
AIM: To investigate the molecular mechanisms underlying the influence of hypoxia and alpha-ketoglutaric acid (α-KG) on scleral collagen expression. METHODS: Meta-analysis and clinical statistics were used to prove the changes in choroidal thickness (ChT) during myopia. The establishment of a hypoxic myopia model (HYP) for rabbit scleral fibroblasts through hypoxic culture and the effects of hypoxia and α-KG on collagen expression were demonstrated by Sirius red staining. Transcriptome analysis was used to verify the genes and pathways that hypoxia and α-KG affect collagen expression. Finally, real-time quantitative reverse transcription polymerase chain reaction (RT-qPCR) was used for reverse verification. RESULTS: Meta-analysis results aligned with clinical statistics, revealing a thinning of ChT, leading to scleral hypoxia. Sirius red staining indicated lower collagen expression in the HYP group and higher collagen expression in the HYP+α-KG group, showed that hypoxia reduced collagen expression in scleral fibroblasts, while α-KG can elevated collagen expression under HYP conditions. Transcriptome analysis unveiled the related genes and signaling pathways of hypoxia and α-KG affect scleral collagen expression and the results were verified by RT-qPCR. CONCLUSION: The potential molecular mechanisms through which hypoxia and α-KG influencing myopia is unraveled and three novel genes TLCD4, TBC1D4, and EPHX3 are identified. These findings provide a new perspective on the prevention and treatment of myopia via regulating collagen expression.
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- 2024
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46. Unhealthy plant-based diet is associated with a higher cardiovascular disease risk in patients with prediabetes and diabetes: a large-scale population-based study
- Author
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Pan Zhuang, Fenglei Wang, Jianxin Yao, Xiaohui Liu, Yin Li, Yang Ao, Hao Ye, Xuzhi Wan, Yu Zhang, and Jingjing Jiao
- Subjects
Plant-based diet ,Cardiovascular disease ,Prediabetes ,Diabetes ,Mediation analysis ,Medicine - Abstract
Abstract Background The role of plant-based dietary patterns in preventing cardiovascular disease (CVD) among individuals with prediabetes and diabetes remains unclear. We aimed to evaluate the associations of plant-based diet index (PDI), healthful PDI (hPDI), and unhealthful PDI (uPDI) with cardiovascular disease (CVD) risk and explore potential contributing factors among people with prediabetes and diabetes. Methods A total of 17,926 participants with prediabetes and 7798 with diabetes were enrolled from the UK Biobank between 2006 and 2010 and followed until the end of 2020. We calculated the PDI, hPDI, and uPDI based on 18 major food groups including plant-based foods and animal-based foods and applied Cox proportional hazard models to calculate hazard ratios (HRs) and 95% confidence intervals (CIs) for CVD risk related to PDI, hPDI, and uPDI. Decomposition analysis was performed to assess the role of dietary components, and mediation analysis was performed to assess the potential mediating role of serum biomarkers underlying these associations. Results A total of 2324 CVD events were documented among individuals with prediabetes, while 1461 events occurred among patients with diabetes. An inverse association was found between hPDI and CVD risk among individuals with prediabetes (HR T3 vs. T1 = 0.88, 95% CI = 0.79–0.98, P trend = 0.025) but not those with diabetes. A positive association was found between uPDI and CVD risk among individuals with prediabetes (HR T3 vs. T1 = 1.17, 95% CI = 1.05–1.30, P trend = 0.005) and those with diabetes (HR T3 vs. T1 = 1.14, 95% CI = 1.00–1.29, P trend = 0.043). High-sugar-sweetened beverages (SSB) intake accounted for 35% of the hPDI-CVD association and 15% of the uPDI-CVD association among individuals with prediabetes, whereas low intake of whole grain accounted for 36% of the association among patients with diabetes. Elevated cystatin C levels explained the largest proportion of the association between uPDI and CVD risk among individuals with prediabetes (15%, 95% CI = 7–30%) and diabetes (44%, 95% CI = 9–86%). Conclusions Adherence to an unhealthy plant-based diet is associated with a higher CVD risk in people with prediabetes or diabetes, which may be partially attributed to low consumption of whole grains, high intake of SSB, and high blood cystatin C levels.
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- 2024
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47. The complete chloroplast genome of Calyptothecium philippinense Broth. (Pterobryaceae, Hypnales)
- Author
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Haifeng Luo, Yu Miao, Wang Lu, Nanqiang Li, Ningning Yu, Yin Li, and Wei Han
- Subjects
Calyptothecium philippinense ,Pterobryaceae ,chloroplast genome ,phylogenetic analysis ,Genetics ,QH426-470 - Abstract
The genus Calyptothecium, currently comprising ca. 30 species worldwide, is the largest genus within the family Pterobryaceae. However, a comprehensive taxonomic revision of this genus is lacking. Calyptothecium philippinense Broth. 1899, a moss species widely found in the tropical regions of Asia, is characterized by the unique rugose leaves and large auriculate leaf bases. In this study, we sequenced the complete chloroplast genome (CPG) of C. philippinense using the Illumina NovaSeq 6000 platform. The length of the CPG of C. philippinense was determined to be 124,513 bp, with an AT content of 74%. The CPG of C. philippinense exhibited a standard quadripartite structure, consisting of one small single-copy (SSC) region (18,541 bp), one large single-copy region (LSC) (87,222 bp), and two inverted repeat (IR) regions (9375 bp each). A total of 126 genes from the CPG of C. philippinense were annotated, including 82 protein-coding genes, eight ribosomal RNA genes, and 36 transfer RNA genes. Phylogenetic analysis based on the CPGs of 25 bryophyte taxa revealed that the three Pterobryaceae species C. philippinense, Calyptothecium hookeri (Mitt.) Broth. and Pterobryopsis orientalis (Müll. Hal.) M. Fleisch. formed a robust clade. The findings could facilitate more accurate classification and help elucidate evolutionary relationships within Calyptothecium.
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- 2024
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48. Effect of multimodal opioid-sparing anesthesia on intestinal function and prognosis of elderly patients with hypertension after colorectal cancer surgery
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Yan-kai Ma, Li Qu, Nan Chen, Zhe Chen, Yin Li, A Li Mu Jiang, Alimujiang Ismayi, Xiao-liang Zhao, and Gui-ping Xu
- Subjects
Opioid-sparing ,Multimodal anesthesia ,Hypertension ,Open surgery for colorectal cancer ,Intestinal function ,Surgery ,RD1-811 - Abstract
Abstract Purpose Colorectal cancer (CRC) surgery in elderly patients with hypertension poses challenges due to potential complications and prolonged recovery. This study aimed to assess the impact of multimodal opioid-sparing anesthesia on intestinal function and prognosis of elderly hypertension patients undergoing CRC surgery. Methods A total of 80 elderly hypertension patients who underwent open surgery for CRC in the People’s Hospital of Xinjiang Uygur Autonomous Region from October 2020 to October 2022 were selected and randomly divided into two group (A and B, n = 40) through the random number table method. Group A received multimodal opioid-sparing anesthesia, defined as low-dose opioid general anesthesia combined with a transversus abdominis plane block, incision infiltration with local anesthetics, and postoperative analgesia via a patient-controlled analgesia (PCA) pump, with the remifentanil dose set at one-third (± 10%) of the conventional group’s dose. Group B received conventional opioid anesthesia, involving standard general anesthesia maintained with remifentanil at 0.4–0.5 µg/(kg·min), incision infiltration with local anesthetics, and postoperative PCA. Primary outcomes included mean arterial pressure (MAP) and heart rate (HR), changes in albumin, C-reactive protein (CRP) and white blood cell (WBC), indicators of intestinal function recovery (the recovery time of bowel sounds, the first exhaust time, the first defecation time and the feeding recovery time), and visual analogue scale (VAS) pain scores. Second outcomes included postoperative complications and total hospital stays. Results After excluding 8 patients, 72 were included in the final analysis. Compared with patients in the B group, patients in the A group exhibited shorter recovery time of bowel sounds, first exhaust time and feeding recovery time (P
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- 2024
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49. MSF: Efficient Diffusion Model Via Multi-Scale Latent Factorize.
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Haohang Xu, Longyu Chen, Shuangrui Ding, Yilin Gao, Dongsheng Jiang, Yin Li, Shugong Xu, Junqing Yu, and Wei Yang
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- 2025
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50. Characteristics of the femoral tunnel of anatomical and isometric single bundle anterior cruciate ligament reconstruction: a modeling analysis based on quadrant method and anatomical landmarks
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Yin, Li, Liao, Dongfa, Xie, Qingyun, Liu, Jinbiao, and Deng, Bing
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- 2024
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