82 results on '"Yike Zou"'
Search Results
2. Grazing alters species relative abundance by affecting plant functional traits in a Tibetan subalpine meadow
- Author
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Qifang He, Kai Jiang, Weicheng Hou, Yang Zhao, Xinhang Sun, Lu Wang, Yike Zou, Zhenhao Zhu, and Hui Zhang
- Subjects
aboveground and belowground traits ,grazing ,resource‐based trade‐offs ,restoration ,subalpine meadows ,trait–abundance relationships ,Ecology ,QH540-549.5 - Abstract
Abstract Domestic livestock grazing has caused dramatic changes in plant community composition across the globe. However, the response of plant species abundance in communities subject to grazing has not often been investigated through a functional lens, especially for belowground traits. Grazing directly impacts aboveground plant tissues, but the relationships between above‐ and belowground traits, and their influence on species abundance are also not well known. We collected plant trait and species relative abundance data in the grazed and nongrazed meadow plant communities in a species‐rich subalpine ecosystem of the Qinghai–Tibet Plateau. We measured three aboveground traits (leaf photosynthesis rate, specific leaf area, and maximum height) and five belowground traits (root average diameter, root biomass, specific root length, root tissue density, and specific root area). We tested for shifts in the relationship between species relative abundance and among all measured traits under grazing compared with the nongrazed meadow. We also compared the power of above‐ and belowground traits to predict species relative abundance. We observed a significant shift from a resource conservation strategy to a resource acquisition strategy. Moreover, this resource conservation versus resource acquisition trade‐off can also determine species relative abundance in the grazed and nongrazed plant communities. Specifically, abundant species in the nongrazed meadow had aboveground and belowground traits that are associated with high resource conservation, whereas aboveground and belowground traits that are correlated with high resource acquisition determined species relative abundance in the grazed meadow. However, belowground traits were found to explain more variances in species relative abundance than aboveground traits in the nongrazed meadow, while aboveground and belowground traits had comparable predictive power in the grazed meadow. We show that species relative abundance in both the grazed and the nongrazed meadows can be predicted by both aboveground traits and belowground traits associated with a resource acquisition versus conservation trade‐off. More importantly, we show that belowground traits have higher predictive power of species relative abundance than aboveground traits in the nongrazed meadow, whereas in the grazed meadows, above‐ and belowground traits had comparable high predictive power.
- Published
- 2021
- Full Text
- View/download PDF
3. Recent Recovery of the World’s Rarest Primate Is Not Directly Linked to Increasing Habitat Quality
- Author
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Yike Zou, Samuel T. Turvey, Jie Cui, Hui Zhang, and Wenfeng Gong
- Subjects
habitat quality ,Hainan gibbon ,population dynamics ,primate conservation ,remote sensing ,species recovery ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
Due to habitat loss and hunting, the Hainan gibbon (Nomascus hainanus), the world’s rarest primate, was reduced to only two social groups and seven known individuals in 1978. Following the establishment of Bawangling National Natural Reserve (BNNR), gibbon forest habitat increased within this landscape from 56 km2 in 1980 to 300 km2, and the species had increased to five groups and 35 individuals by 2021. It is important to assess whether the large increase in habitat area was responsible for gibbon population increase, or whether gibbon recovery was associated with other factors. Here we use a 21-year longitudinal dataset of Hainan gibbon population change and habitat change, combined with vegetation survey plot data for 2021, to establish an accurate distribution baseline for natural tropical broadleaf forest across the BNNR landscape from 400 to 1300 m (the elevational range of gibbons at BNNR) and within the home range for each of the five Hainan gibbon social groups. We then utilized Landsat time-series images and analysis to compute non-linear causal relationships between forest dynamics and gibbon population growth from 2000 to 2021, both across BNNR and within each gibbon group home range. Metrics of forest dynamics include change in total forest area and forest fragmentation, and metrics of gibbon population dynamics include variation in total number of individuals for the entire population and within each social group, and variation in total number of groups. Our results demonstrate that overall gibbon population growth shows a positive relationship with improved habitat quality, with a one-year time lag of population response. However, changes in numbers of individuals within social groups do not show a similar relationship with improving habitat quality, suggesting that increasing forest cover and connectivity within the BNNR landscape are not direct determinants of Hainan gibbon recovery and that other environmental and/or anthropogenic factors are likely to be involved.
- Published
- 2022
- Full Text
- View/download PDF
4. Tropical Rainforest Successional Processes can Facilitate Successfully Recovery of Extremely Degraded Tropical Forest Ecosystems Following Intensive Mining Operations
- Author
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Yang Zhao, Yike Zou, Lu Wang, Rui Su, Qifang He, Kai Jiang, Bin Chen, Yuting Xing, Tiedong Liu, Hui Zhang, Jie Cui, and Chen Wang
- Subjects
deforestation ,fast-growing trees ,functional traits ,primary succession ,reforestation ,secondary succession ,Environmental sciences ,GE1-350 - Abstract
Reforestation is an effective way to alleviate deforestation and its negative impacts on ecosystem services. In tropical rainforest ecosystem, however, frequent typhoons and heavy rainfall can result in landslides and uprooting of many seedlings, making reforestation efforts very difficult, especially within extremely degraded sites where soil conditions cannot support any plant life. Here, we described a reforestation protocol which is based on tropical rainforest successional processes to not only prevent landslides and tree uprooting due to frequent typhoon and heavy rain, but also accelerate tropical forest succession. This protocol first used the slope and soil layer of the undisturbed old-growth tropical rainforest as a reference to reconstruct slope and soil layers. Then multiple tropical tree species with high growth and survival rate were separately monocultured in the reconstructed soil layers. In the year of 2015 and 2016, we tested the effectiveness of this protocol to recover a 0.2 km2 extremely degraded tropical rainforest which consists of bare rock and thus does not support any plant life, in Sanya city, China. Our results showed that, both typhoons and heavy rains did not result in landslide or any tree damages in the area this reforestation protocol was used. Moreover, our separately monocultured eight fast-growing tree species have much higher fast-growing related functional traits than those for tree species in the adjacent undisturbed tropical seasonal forest, which in turn resulted in large soil water and nutrient loss within 3 years. This seemed to simulate a quick transition from primary succession (consist of bare rock and cannot support any plant life) to mid-stage of secondary tropical rainforest succession (many fast-growing pioneer tree species induced high soil water and nutrient loss). Thus, mixing the late-successional tropical tree species with each of the separately monocultured eight fast-growing tree species can accelerate recovery to the undisturbed tropical rainforest as soon as possible. Overall, based on tropical rainforest successional processes, our research provides an effective protocol for quickly and effectively restoring an extremely degraded tropical rainforest ecosystem. We expect that this work will be important for the future recovery of other extremely degraded tropical rainforest ecosystems.
- Published
- 2021
- Full Text
- View/download PDF
5. Relative and Absolute Stereochemistry of Diacarperoxides: Antimalarial Norditerpene Endoperoxides from Marine Sponge Diacarnus megaspinorhabdosa
- Author
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Fan Yang, Yike Zou, Ru-Ping Wang, Mark T. Hamann, Hong-Jun Zhang, Wei-Hua Jiao, Bing-Nan Han, Shao-Jiang Song, and Hou-Wen Lin
- Subjects
antimalarial ,marine sponge ,endoperoxide ,Biology (General) ,QH301-705.5 - Abstract
Five new norditerpene endoperoxides, named diacarperoxides H–L (1–5), and a new norditerpene diol, called diacardiol B (6), were isolated from the South China Sea sponge, Diacarnus megaspinorhabdosa. Their structures, including conformations and absolute configurations, were determined by using spectroscopic analyses, computational approaches and chemical degradation. Diacarperoxides H–J (1–3) showed some interesting stereochemical issues, as well as antimalarial activity.
- Published
- 2014
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6. Enzymatic Synthesis of Unprotected α,β-Diamino Acids via Direct Asymmetric Mannich Reactions.
- Author
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Shaonan Liu, Jinmin Gao, Yike Zou, and Yang Hai
- Published
- 2024
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7. A cyclase that catalyses competing 2 + 2 and 4 + 2 cycloadditions
- Author
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Hongbo Wang, Yike Zou, Miao Li, Zhijun Tang, Jiabao Wang, Zhenhua Tian, Nina Strassner, Qian Yang, Qingfei Zheng, Yujiao Guo, Wen Liu, Lifeng Pan, and K. N. Houk
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General Chemical Engineering ,General Chemistry - Published
- 2023
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8. Somalactams A–D: Anti‐inflammatory Macrolide Lactams with Unique Ring Systems from an Arctic Actinomycete Strain
- Author
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Fan Yang, Moli Sang, Jing‐Rong Lu, Hui‐Min Zhao, Yike Zou, Wei Wu, Yong Yu, Ya‐Wei Liu, Wencheng Ma, Yun Zhang, Wei Zhang, and Hou‐Wen Lin
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General Chemistry ,General Medicine ,Catalysis - Published
- 2023
- Full Text
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9. Structure and Antimicrobial Activity of Rare Lactone Lipids from the Sooty Mold (Scorias spongiosa)
- Author
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Robert W. Schumacher, Amanda L. Waters, Jiangnan Peng, Richard A. Schumacher, Ailish Bateman, Josie Thiele, Andrew J. Mitchell, Samuel G. Miller, Arthur Goldberg, Siddharth K. Tripathi, Ameeta K. Agarwal, Yike Zou, Yeun-Mun Choo, and Mark T. Hamann
- Subjects
Pharmacology ,Complementary and alternative medicine ,Organic Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Analytical Chemistry - Published
- 2022
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10. Computational Design of a Tetrapericyclic Cycloaddition and the Nature of Potential Energy Surfaces with Multiple Bifurcations
- Author
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Ana Martin-Somer, Xiao-Song Xue, Cooper S. Jamieson, Yike Zou, K.N. Houk, and UAM. Departamento de Química Física Aplicada
- Subjects
Colloid and Surface Chemistry ,Chemical Sciences ,Física ,Química ,General Chemistry ,Biochemistry ,Catalysis - Abstract
An ambimodal transition state (TS) that leads to formation of four different pericyclic reaction products ([4 + 6]-, [2 + 8]-, [8 + 2]-, and [6 + 4]-cycloadducts) without any intervening minima has been designed and explored with DFT computations and quasiclassical molecular dynamics. Direct dynamics simulations propagated from the ambimodal TS show the evolution of trajectories to give the four cycloadducts. The topography of the PES is a key factor in product selectivity. A good correlation is observed between geometrical resemblance of the products to the ambimodal TS (measured by the RMSD) and the ratio of products formed in the dynamics simulations, We are grateful to the National Science Foundation (CHE1764328 to K.N.H.) for financial support of this research and for access to XSEDE and UCLA Hoffman 2 for computer time and for this study. A.M.S. thanks the Madrid Government (Comunidad de Madrid-Spain) under the Multiannual Agreement with Universidad Autónoma de Madrid in the line Support to Young Researchers, in the context of the V PRICIT (SI3-PJI-2021-00463) and “Ministerio de Educación Cultura y Deporte” for funding (CAS18/00458)
- Published
- 2023
11. Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation
- Author
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Eugene Kuatsjah, Michael Zahn, Xiangyang Chen, Ryo Kato, Daniel J. Hinchen, Mikhail O. Konev, Rui Katahira, Christian Orr, Armin Wagner, Yike Zou, Stefan J. Haugen, Kelsey J. Ramirez, Joshua K. Michener, Andrew R. Pickford, Naofumi Kamimura, Eiji Masai, K. N. Houk, John E. McGeehan, and Gregg T. Beckham
- Subjects
Multidisciplinary ,Bacterial Proteins ,Lyases ,lignin ,Stereoisomerism ,Oxidoreductases ,NTF-2 ,Sphingobium sp. SYK-6 ,Novosphingobium aromaticivorans ,aromatic catabolism - Abstract
Lignin valorization is being intensely pursued via tandem catalytic depolymerization and biological funneling to produce single products. In many lignin depolymerization processes, aromatic dimers and oligomers linked by carbon–carbon bonds remain intact, necessitating the development of enzymes capable of cleaving these compounds to monomers. Recently, the catabolism of erythro -1,2-diguaiacylpropane-1,3-diol ( erythro -DGPD), a ring-opened lignin-derived β-1 dimer, was reported in Novosphingobium aromaticivorans . The first enzyme in this pathway, LdpA (formerly LsdE), is a member of the nuclear transport factor 2 (NTF-2)-like structural superfamily that converts erythro -DGPD to lignostilbene through a heretofore unknown mechanism. In this study, we performed biochemical, structural, and mechanistic characterization of the N. aromaticivorans LdpA and another homolog identified in Sphingobium sp. SYK-6, for which activity was confirmed in vivo. For both enzymes, we first demonstrated that formaldehyde is the C 1 reaction product, and we further demonstrated that both enantiomers of erythro -DGPD were transformed simultaneously, suggesting that LdpA, while diastereomerically specific, lacks enantioselectivity. We also show that LdpA is subject to a severe competitive product inhibition by lignostilbene. Three-dimensional structures of LdpA were determined using X-ray crystallography, including substrate-bound complexes, revealing several residues that were shown to be catalytically essential. We used density functional theory to validate a proposed mechanism that proceeds via dehydroxylation and formation of a quinone methide intermediate that serves as an electron sink for the ensuing deformylation. Overall, this study expands the range of chemistry catalyzed by the NTF-2-like protein family to a prevalent lignin dimer through a cofactorless deformylation reaction.
- Published
- 2023
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12. Enzymatic control of endo- and exo-stereoselective Diels–Alder reactions with broad substrate scope
- Author
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Lei Gao, Yike Zou, Xiaojing Liu, Jun Yang, Xiaoxia Du, Jin Wang, Xinshui Yu, Junping Fan, Mingxuan Jiang, Yuli Li, K. N. Houk, and Xiaoguang Lei
- Subjects
Process Chemistry and Technology ,Bioengineering ,Biochemistry ,Catalysis - Published
- 2021
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13. Total Syntheses of (+)-Peniciketals A-B and (−)-Diocollettines A Exploiting a Photoisomerization/Cyclization Union Protocol
- Author
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Chia-Ping H. Yang, Yifan Deng, K. N. Houk, Amos B. Smith, and Yike Zou
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Anions ,Molecular Structure ,Photoisomerization ,Chemistry ,Organic Chemistry ,Enantioselective synthesis ,Article ,Medicinal and Biomolecular Chemistry ,Cyclization ,Computational chemistry ,Density functional theory ,Protocol (object-oriented programming) ,Biological evaluation - Abstract
A late-stage photoisomerization/cyclization union tactic, in conjunction with Type I Anion Relay Chemistry (ARC), permits enantioselective total syntheses and then biological evaluation of (+)-peniciketals A and B. The photochemical protocol was further showcased by an efficient three-step construction of the architecturally complex polycyclic skeleton found in (-)-diocollettines A. The mechanism and diastereoselectivity of the photochemical protocol have also been explored by both experiment and density functional theory calculations.
- Published
- 2021
- Full Text
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14. Nonenzymatic Stereoselective S-Glycosylation of Polypeptides and Proteins
- Author
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Xia Zhang, Kendall N. Houk, Rong Shi, Shiqian Qi, Dawen Niu, Jin-Ge Cao, Li Zhou, Xiaoling Shu, Ga Young Lee, Li-Fan Deng, Shi-Yang Xu, Haiyan Ren, Yike Zou, Lunzhi Dai, Li-Qiang Wan, and Yanqiu Gong
- Subjects
Reaction mechanism ,animal structures ,Glycosylation ,Chemistry ,Stereochemistry ,Radical ,macromolecular substances ,General Chemistry ,Biochemistry ,Catalysis ,carbohydrates (lipids) ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Glycation ,Functional group ,lipids (amino acids, peptides, and proteins) ,Stereoselectivity ,Glycosyl ,Cysteine - Abstract
Here we report a nonenzymatic glycosylation reaction that builds axial S-glycosidic bonds under biorelevant conditions. This strategy is enabled by the design and use of allyl glycosyl sulfones as precursors to glycosyl radicals and exploits the exceptional functional group tolerance of radical processes. Our method introduces a variety of unprotected glycosyl units to the cysteine residues of peptides in a highly selective fashion. Through developing the second-generation protocol, we applied our method in the direct glycosylation of complex polypeptides and proteins. Computational studies were performed to elucidate the reaction mechanism.
- Published
- 2021
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15. Efficient Lewis acid catalysis of an abiological reaction in a de novo protein scaffold
- Author
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Anna Camus, Donald Hilvert, Takahiro Mori, Yike Zou, Roger C. Helgeson, H. Adrian Bunzel, Gonzalo Jiménez-Osés, Sophie Basler, Sabine Studer, Yusuke Ota, and K. N. Houk
- Subjects
Scaffold protein ,chemistry.chemical_classification ,biology ,010405 organic chemistry ,Chemistry ,General Chemical Engineering ,Metal ions in aqueous solution ,fungi ,Active site ,General Chemistry ,010402 general chemistry ,Directed evolution ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,Catalysis ,Lewis acid catalysis ,Enzyme ,biology.protein ,Stereoselectivity - Abstract
New enzyme catalysts are usually engineered by repurposing the active sites of natural proteins. Here we show that design and directed evolution can be used to transform a non-natural, functionally naive zinc-binding protein into a highly active catalyst for an abiological hetero-Diels–Alder reaction. The artificial metalloenzyme achieves >104 turnovers per active site, exerts absolute control over reaction pathway and product stereochemistry, and displays a catalytic proficiency (1/KTS = 2.9 × 1010 M−1) that exceeds all previously characterized Diels–Alderases. These properties capitalize on effective Lewis acid catalysis, a chemical strategy for accelerating Diels–Alder reactions common in the laboratory but so far unknown in nature. Extension of this approach to other metal ions and other de novo scaffolds may propel the design field in exciting new directions. A de novo designed zinc-binding protein has been converted into a highly active, stereoselective catalyst for a hetero-Diels–Alder reaction. Design and directed evolution were used to effectively harness Lewis acid catalysis and create an enzyme more proficient than other reported Diels–Alderases.
- Published
- 2021
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16. Mechanism of the Stereoselective Catalysis of Diels–Alderase PyrE3 Involved in Pyrroindomycin Biosynthesis
- Author
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Bo Li, Xingyi Guan, Song Yang, Yike Zou, Wen Liu, and K. N. Houk
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Colloid and Surface Chemistry ,Cycloaddition Reaction ,Chemical Sciences ,Molecular Conformation ,General Chemistry ,Molecular Dynamics Simulation ,Biochemistry ,Article ,Catalysis - Abstract
The biosynthesis of pyrroindomycins A and B features a complexity-building [4 + 2] cycloaddition cascade, which generates the spirotetramate core under the catalytic effects of monofunctional Diels-Alderases PyrE3 and PyrI4. We recently showed that the main functions of PyrI4 include acid catalysis and induced-fit/conformational selection. We now present quantum mechanical and molecular dynamics studies implicating a different mode of action by PyrE3, which prearranges an anionic polyene substrate into a high-energy reactive conformation at which an inverse-electron-demand Diels-Alder reaction can occur with a low barrier. Stereoselection is realized by strong binding interactions at the endo stereochemical relationship and a local steric constraint on the endo-1,3-diene unit. These findings, illustrating distinct mechanisms for PyrE3 and PyrI4, highlight how nature has evolved multiple ways to catalyze Diels-Alder reactions.
- Published
- 2022
17. Computational Investigation of the Mechanism of Diels–Alderase PyrI4
- Author
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Kendall N. Houk, Peiyuan Yu, Yike Zou, Wei Li, Zhijun Tang, Jacob N. Sanders, Hongbo Wang, Song Yang, and Wen Liu
- Subjects
Stereochemistry ,Stereoisomerism ,Crystallography, X-Ray ,Biochemistry ,Article ,Catalysis ,Ligases ,Acid catalysis ,Colloid and Surface Chemistry ,Stereospecificity ,Bacterial Proteins ,Moiety ,Density Functional Theory ,Biological Products ,Binding Sites ,Cycloaddition Reaction ,Chemistry ,fungi ,Substrate (chemistry) ,General Chemistry ,Streptomyces ,Molecular Docking Simulation ,Biocatalysis ,Intramolecular force ,Stereoselectivity ,Macrolides - Abstract
We studied the mechanisms of activation and stereoselectivity of a monofunctional Diels-Alderase (PyrI4)-catalyzed intramolecular Diels-Alder reaction that leads to formation of the key spiro-tetramate moiety in the biosynthesis of the pyrroindomycin family of natural products. Key activation effects of PyrI4 include acid catalysis and an induced-fit mechanism that cooperate with the unique "lid" feature of PyrI4 to stabilize the Diels-Alder transition state. PyrI4 enhances the intrinsic Diels-Alder stereoselectivity of the substrate and leads to stereospecific formation of the product.
- Published
- 2020
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18. Computational Exploration of a Redox-Neutral Organocatalytic Mitsunobu Reaction
- Author
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Kendall N. Houk, Jonathan J. Wong, and Yike Zou
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Phosphine oxide ,General Chemistry ,010402 general chemistry ,Diphenylphosphine oxide ,01 natural sciences ,Biochemistry ,Combinatorial chemistry ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Catalytic cycle ,chemistry ,Nucleophilic substitution ,SN2 reaction ,Mitsunobu reaction ,Carboxylate - Abstract
The mechanism of the redox-neutral organocatalytic Mitsunobu reaction, catalyzed by (2-hydroxybenzyl)diphenylphosphine oxide, reported by Denton et al., has been studied computationally with ωB97X-D density functional theory. We discovered that the nucleophilic substitution reaction between carboxylate and alkoxyphosphonium ions, to reform the phosphine oxide catalyst, is the rate-determining step of the overall process and is significantly accelerated compared with a general-acid-catalyzed SN2 reaction. The (2-hydroxybenzyl)diphenylphosphine oxide is regenerated and activated in every catalytic cycle via intramolecular dehydration/cyclization. We also designed several phosphine oxide catalysts that we predict to be more effective catalysts.
- Published
- 2020
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19. Amentotaxins C–V, Structurally Diverse Diterpenoids from the Leaves and Twigs of the Vulnerable Conifer Amentotaxus argotaenia and Their Cytotoxic Effects
- Author
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Juan Xiong, Selbi Nuryyeva, Hao Li, Wen-Xuan Wang, Yu-Ru Liang, Yike Zou, Shao-Xin Chen, K. N. Houk, and Jin-Feng Hu
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Pharmacology ,Circular dichroism ,biology ,010405 organic chemistry ,Stereochemistry ,Chemistry ,Organic Chemistry ,Pharmaceutical Science ,biology.organism_classification ,01 natural sciences ,Norditerpenoids ,0104 chemical sciences ,Analytical Chemistry ,HeLa ,010404 medicinal & biomolecular chemistry ,Complementary and alternative medicine ,Phytochemical ,Drug Discovery ,Ic50 values ,Molecular Medicine ,Cytotoxic T cell ,Human cancer ,Amentotaxus argotaenia - Abstract
A phytochemical investigation of the MeOH extract of the leaves and twigs of Amentotaxus argotaenia, a relict vulnerable coniferous species endemic to China, led to the isolation and characterization of 35 diterpenoids/norditerpenoids. Twenty of these are new, including 11 ent-kaurane-type (amentotaxins C-M, 1-11, respectively), three icetexane-type [= 9(10→20)abeo-abietane-type (amentotaxins N-P, 12-14, respectively)], four ent-labdane-type (amentotaxins Q-T, 15-18, respectively), and two isopimarane-type [amentotaxins U (19) and V (20)] compounds. Their structures were elucidated on the basis of spectroscopic data, single-crystal X-ray diffraction, the modified Mosher's method, and electronic circular dichroism data analyses. Compounds 1-9 are rare 18-nor-ent-kaurane-type diterpenoids featuring a 4β,19-epoxy ring. All the isolates were evaluated for their cytotoxic effects against a small panel of cultured human cancer cell lines (HeLa, A-549, MDA-MB-231, SKOV3, Huh-7, and HCT-116), and some of them exhibited cytotoxicities with IC50 values ranging from 1.5 to 10.0 μM.
- Published
- 2020
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20. Nonenzymatic Stereoselective
- Author
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Li-Qiang, Wan, Xia, Zhang, Yike, Zou, Rong, Shi, Jin-Ge, Cao, Shi-Yang, Xu, Li-Fan, Deng, Li, Zhou, Yanqiu, Gong, Xiaoling, Shu, Ga Young, Lee, Haiyan, Ren, Lunzhi, Dai, Shiqian, Qi, K N, Houk, and Dawen, Niu
- Subjects
Glycosylation ,Molecular Structure ,Proteins ,Stereoisomerism ,Peptides - Abstract
Here we report a nonenzymatic glycosylation reaction that builds axial
- Published
- 2021
21. Halogen-bond-assisted radical activation of glycosyl donors enables mild and stereoconvergent 1,2-cis-glycosylation
- Author
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Chen Zhang, Hao Zuo, Ga Young Lee, Yike Zou, Qiu-Di Dang, K. N. Houk, and Dawen Niu
- Subjects
Glycosylation ,Halogens ,General Chemical Engineering ,Stereoisomerism ,General Chemistry ,Glycosides ,Iodides - Abstract
The chemistry of carbohydrates has a history of over 100 years, but simple, stereoselective and efficient glycosylation methods remain highly needed to facilitate the studies of sugars in various disciplines. Here we report a strategy for 1,2-cis-glycosylation without using metals, strong (Lewis) acids, elaborate catalysts or labile substrates. Our method operates by a unique mechanism: it activates glycosyl donors through a radical cascade rather than the conventional acid-promoted, ionic process. As elucidated by computational and experimental studies, the allyl glycosyl sulfones (as donors) form halogen bond complexes with perfluoroalkyl iodides, which-merely by visible light irradiation-fragment via radical intermediates to give the electrophilic glycosyl iodides. In situ trapping by various nucleophiles affords, in a stereoconvergent manner, the challenging 1,2-cis-glycosides. This metal- and acid-free reaction shows remarkable tolerance to functional groups. The high stereoselectivity holds for a broad array of donors. This study suggests that the simple C2-alkoxy group can serve as an effective directing group for building 1,2-cis-glycosidic bonds.
- Published
- 2021
22. Tropical Rainforest Successional Processes can Facilitate Successfully Recovery of Extremely Degraded Tropical Forest Ecosystems Following Intensive Mining Operations
- Author
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Rui Su, Yang Zhao, Hui Zhang, Yuting Xing, Chen Wang, Kai Jiang, Jie Cui, Qifang He, Lu Wang, Bin Chen, Yike Zou, and Tiedong Liu
- Subjects
0106 biological sciences ,Secondary succession ,primary succession ,Agroforestry ,Reforestation ,Ecological succession ,secondary succession ,010603 evolutionary biology ,01 natural sciences ,Ecosystem services ,Environmental sciences ,fast-growing trees ,Deforestation ,deforestation ,Environmental science ,GE1-350 ,Ecosystem ,functional traits ,reforestation ,Primary succession ,010606 plant biology & botany ,General Environmental Science ,Tropical rainforest - Abstract
Reforestation is an effective way to alleviate deforestation and its negative impacts on ecosystem services. In tropical rainforest ecosystem, however, frequent typhoons and heavy rainfall can result in landslides and uprooting of many seedlings, making reforestation efforts very difficult, especially within extremely degraded sites where soil conditions cannot support any plant life. Here, we described a reforestation protocol which is based on tropical rainforest successional processes to not only prevent landslides and tree uprooting due to frequent typhoon and heavy rain, but also accelerate tropical forest succession. This protocol first used the slope and soil layer of the undisturbed old-growth tropical rainforest as a reference to reconstruct slope and soil layers. Then multiple tropical tree species with high growth and survival rate were separately monocultured in the reconstructed soil layers. In the year of 2015 and 2016, we tested the effectiveness of this protocol to recover a 0.2 km2 extremely degraded tropical rainforest which consists of bare rock and thus does not support any plant life, in Sanya city, China. Our results showed that, both typhoons and heavy rains did not result in landslide or any tree damages in the area this reforestation protocol was used. Moreover, our separately monocultured eight fast-growing tree species have much higher fast-growing related functional traits than those for tree species in the adjacent undisturbed tropical seasonal forest, which in turn resulted in large soil water and nutrient loss within 3 years. This seemed to simulate a quick transition from primary succession (consist of bare rock and cannot support any plant life) to mid-stage of secondary tropical rainforest succession (many fast-growing pioneer tree species induced high soil water and nutrient loss). Thus, mixing the late-successional tropical tree species with each of the separately monocultured eight fast-growing tree species can accelerate recovery to the undisturbed tropical rainforest as soon as possible. Overall, based on tropical rainforest successional processes, our research provides an effective protocol for quickly and effectively restoring an extremely degraded tropical rainforest ecosystem. We expect that this work will be important for the future recovery of other extremely degraded tropical rainforest ecosystems.
- Published
- 2021
- Full Text
- View/download PDF
23. LC-MS guided isolation and dereplication of Lycopodium alkaloids from Lycopodium cernuum var. sikkimense of different geographical origins
- Author
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Yike Zou, Na Li, Junmin Li, Jin-Feng Hu, Ezzat E.A. Osman, Zexin Jin, Yu Tang, Juan Xiong, Guang-Lei Ma, and Yanran Ai
- Subjects
Models, Molecular ,0106 biological sciences ,Lycopodium ,Molecular Conformation ,Single plant ,Plant Science ,Horticulture ,01 natural sciences ,Biochemistry ,Alkaloids ,Tandem Mass Spectrometry ,Liquid chromatography–mass spectrometry ,Botany ,Molecular Biology ,Geography ,biology ,010405 organic chemistry ,Lycopodiaceae ,Chemistry ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,Plant species ,Chromatography, Liquid ,010606 plant biology & botany - Abstract
Lycopodium alkaloids (LAs) are the characteristic metabolites of club mosses. Chemical differences often exist in different specimens of a single plant species collected from different geographic origins. In this study, a preliminary LC-MS detection and dereplication analyses of alkaloidal constituents of Lycopodium cernuum var. sikkimense (Mull. Hal.) C.B. Clarke (LCVS2) collected from Fujian province led to the isolation and characterization of three undescribed LAs, lycocernuskines A-C, and six known cernuane-type LAs. The known compounds were previously isolated from the same plant species (LCVS1) collected from Chongqing, and so their dereplication in LCVS2 was accomplished based on their retention times (tR) and the quasi-molecular ion peaks in the LC-MS fingerprint. Chemical structures were identified by spectroscopic methods, single-crystal X-ray diffraction analysis, and electronic circular dichroism calculations. Lycocernuskines A and B are the first two examples of C-12 hydroxylated phlegmarane-type LAs bearing a nitrone residue at the quinoline ring. The isolates were evaluated for their anti-AChE and neuroprotective effects.
- Published
- 2019
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24. Computationally Assisted Discovery and Assignment of a Highly Strained and PANC-1 Selective Alkaloid from Alaska’s Deep Ocean
- Author
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Mark T. Hamann, Pankaj Pandey, Clemens Anklin, Yike Zou, Robert J. Doerksen, Bin Wang, Daneel Ferreira, Mitchell A. Avery, James Sims, Frederick A. Valeriote, Michelle Kelly, Colin L Welsh, Robert P. Stone, and Xiaojuan Wang
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Stereochemistry ,Antineoplastic Agents ,Stereoisomerism ,Latrunculia ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Indole Alkaloids ,Mice ,Colloid and Surface Chemistry ,Latrunculiidae ,Cell Line, Tumor ,Drug Discovery ,Animals ,Humans ,Solid tumor ,Molecular Structure ,biology ,Drug discovery ,Chemistry ,Alkaloid ,General Chemistry ,biology.organism_classification ,Porifera ,0104 chemical sciences ,Models, Chemical ,Pancreatic cancer cell ,Poecilosclerida ,Alaska - Abstract
We report here the orchestration of molecular ion networking and a set of computationally assisted structural elucidation approaches in the discovery of a new class of pyrroloiminoquinone alkaloids that possess selective bioactivity against pancreatic cancer cell lines. Aleutianamine represents the first in a new class of pyrroloiminoquinone alkaloids possessing a highly strained multibridged ring system, discovered from Latrunculia ( Latrunculia) austini Samaai, Kelly & Gibbons, 2006 (class Demospongiae, order Poecilosclerida, family Latrunculiidae) recovered during a NOAA deep-water exploration of the Aleutian Islands. The molecule was identified with the guidance of mass spectrometry, nuclear magnetic resonance, and molecular ion networking (MoIN) analysis. The structure of aleutianamine was determined using extensive spectroscopic analysis in conjunction with computationally assisted quantifiable structure elucidation tools. Aleutianamine exhibited potent and selective cytotoxicity toward solid tumor cell lines including pancreatic cancer (PANC-1) with an IC50 of 25 nM and colon cancer (HCT-116) with an IC50 of 1 μM, and represents a potent and selective candidate for advanced preclinical studies.
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- 2019
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25. Total Synthesis of (-)-Strictosidine and Interception of Aryne Natural Product Derivatives 'Strictosidyne' and 'Strictosamidyne'
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Megan Lim, Sarah M. Anthony, Veronica Tona, Yike Zou, Neil K. Garg, Kendall N. Houk, Lucas A. Morrill, Yi Tang, and John M. Billingsley
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Stereochemistry ,Monoterpene ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Aryne ,Catalysis ,Article ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Vinca Alkaloids ,Indole test ,chemistry.chemical_classification ,Biological Products ,Natural product ,Molecular Structure ,Alkene ,Total synthesis ,Stereoisomerism ,General Chemistry ,0104 chemical sciences ,chemistry ,Strictosidine ,Alkynes ,Chemical Sciences ,Stereoselectivity - Abstract
Monoterpene indole alkaloids are a large class of natural products derived from a single biosynthetic precursor, strictosidine. We describe a synthetic approach to strictosidine that relies on a key facially selective Diels-Alder reaction between a glucosyl-modified alkene and an enal to set the C15-C20-C21 stereotriad. DFT calculations were used to examine the origin of stereoselectivity in this key step, wherein two of 16 possible isomers are predominantly formed. These calculations suggest the presence of a glucosyl unit, also inherent in the strictosidine structure, guides diastereoselectivity, with the reactive conformation of the vinyl glycoside dienophile being controlled by an exo-anomeric effect. (-)-Strictosidine was subsequently accessed using late-stage synthetic manipulations and an enzymatic Pictet-Spengler reaction. Several new natural product analogs were also accessed, including precursors to two unusual aryne natural product derivatives termed "strictosidyne" and "strictosamidyne". These studies provide a strategy for accessing glycosylic natural products and a new platform to access monoterpene indole alkaloids and their derivatives.
- Published
- 2021
26. Visible spectra of W8+ in an electron-beam ion trap
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C. L. Yan, Q. Lu, Jiang Xiao, G. Q. Xu, Yike Zou, Yue-Mei Yang, Jiuyuan Li, Ji-Guang Wang, J. Meng, and Chong Yang Chen
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Physics ,0103 physical sciences ,Atomic physics ,010306 general physics ,01 natural sciences ,Spectral line ,010305 fluids & plasmas ,Ion ,Electron beam ion trap - Abstract
To provide spectroscopic data for lowly charged tungsten ions relevant to fusion research, this work focuses on the ${\mathrm{W}}^{8+}$ ion. Six visible spectra lines from ${\mathrm{W}}^{8+}$ in the range of 420--660 nm are observed with a compact electron-beam ion trap in Shanghai. Furthermore, transition energies are calculated for the 30 lowest levels of the $4{f}^{14}5{s}^{2}5{p}^{4}, 4{f}^{13}5{s}^{2}5{p}^{5}$, and $4{f}^{12}5{s}^{2}5{p}^{6}$ configurations of ${\mathrm{W}}^{8+}$ by using the flexible atomic code (fac) and grasp package. Reasonably good agreement is found between our two independent atomic-structure calculations. The resulting atomic parameters are adopted to simulate the spectra based on the collisional-radiative model implemented in the fac code. This assists us with identification of six strong magnetic-dipole transitions in the $4{f}^{13}5{s}^{2}5{p}^{5}$ and $4{f}^{12}5{s}^{2}5{p}^{6}$ configurations from our experiments.
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- 2021
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27. Aromatic Ring Substituted Aaptamine Analogues as Potential Cytotoxic Agents against Extranodal Natural Killer/T-Cell Lymphoma
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Jing He, Hongze Liao, Fan Yang, Hua Han, Yung-Ting Chang, K. N. Houk, Jing-Rong Lu, Wei-Zhuo Tang, Yike Zou, Yuan Gao, and Hou-Wen Lin
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Aaptos aaptos ,Stereochemistry ,Pharmaceutical Science ,Antineoplastic Agents ,Lymphoma, T-Cell ,Analytical Chemistry ,chemistry.chemical_compound ,Suzuki reaction ,Drug Discovery ,medicine ,Humans ,Naphthyridines ,Cytotoxicity ,IC50 ,Pharmacology ,Natural product ,biology ,Organic Chemistry ,Natural killer T cell ,biology.organism_classification ,medicine.disease ,Lymphoma ,Killer Cells, Natural ,Complementary and alternative medicine ,chemistry ,Cell culture ,Molecular Medicine ,Drug Screening Assays, Antitumor - Abstract
A chemical modification study was conducted on the marine natural product aaptamine (1), isolated from the marine sponge Aaptos aaptos. Thirty new derivatives substituted by various aromatic rings at the 3- and 7-positions of aaptamine were prepared by bromination, followed by the Suzuki coupling reaction. Sixteen compounds displayed cytotoxicities to four cancer cell lines (IC50 < 10 μM). In particular, compound 5i demonstrated a significant antiproliferative effect on the extranodal natural killer/T-cell lymphoma (ENKT) cell line SNK-6 with an IC50 value of 0.6 μM. Additionally, compound 5i showed cytotoxicities to multiple lymphoma cell lines, including Ramos, Raji, WSU-DLCL2, and SU-DHL-4 cells.
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- 2020
28. Enzyme-free synthesis of natural phospholipids in water
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Susan Q. Lang, Ahanjit Bhattacharya, Luping Liu, Yike Zou, Neal K. Devaraj, Kendall N. Houk, and Dongyang Zhang
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General Chemical Engineering ,Acylation ,Cell ,Lysophospholipids ,Electrochemistry ,010402 general chemistry ,01 natural sciences ,Hydrothermal circulation ,Article ,03 medical and health sciences ,Transacylation ,medicine ,Phospholipids ,030304 developmental biology ,0303 health sciences ,Aqueous solution ,Artificial cell ,010405 organic chemistry ,Chemistry ,Vesicle ,Cell Membrane ,Organic Chemistry ,Cationic polymerization ,Water ,Lipid metabolism ,General Chemistry ,0104 chemical sciences ,Membrane ,medicine.anatomical_structure ,Protein Biosynthesis ,Chemical Sciences ,Biophysics ,lipids (amino acids, peptides, and proteins) ,Artificial Cells ,Generic health relevance - Abstract
All living organisms synthesize phospholipids as the primary constituent of their cell membranes. Enzymatic synthesis of diacylphospholipids requires preexisting membrane-embedded enzymes. This limitation has led to models of early life in which the first cells used simpler types of membrane building blocks and has hampered integration of phospholipid synthesis into artificial cells. Here we demonstrate an enzyme-free synthesis of natural diacylphospholipids by transacylation in water, which is enabled by a combination of ion pairing and self-assembly between lysophospholipids and acyl donors. A variety of membrane-forming cellular phospholipids have been obtained in high yields. Membrane formation takes place in water from natural alkaline sources such as soda lakes and hydrothermal oceanic vents. When formed vesicles are transferred to more acidic solutions, electrochemical proton gradients are spontaneously established and maintained. This high-yielding non-enzymatic synthesis of natural phospholipids in water opens up new routes for lipid synthesis in artificial cells and sheds light on the origin and evolution of cellular membranes.
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- 2020
29. Amentotaxins C-V, Structurally Diverse Diterpenoids from the Leaves and Twigs of the Vulnerable Conifer
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Hao, Li, Yu-Ru, Liang, Shao-Xin, Chen, Wen-Xuan, Wang, Yike, Zou, Selbi, Nuryyeva, K N, Houk, Juan, Xiong, and Jin-Feng, Hu
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Plant Leaves ,Molecular Structure ,Cell Line, Tumor ,Spectrum Analysis ,Humans ,Diterpenes ,Drug Screening Assays, Antitumor ,Antineoplastic Agents, Phytogenic ,Taxaceae - Abstract
A phytochemical investigation of the MeOH extract of the leaves and twigs of
- Published
- 2020
30. Sungeidines from a Non-canonical Enediyne Biosynthetic Pathway
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Guang-Lei Ma, Selbi Nuryyeva, Zhao-Xun Liang, Hoa Thi Tran, Jin-Feng Hu, Juan Xiong, Zhen Jie Low, Yike Zou, Limei Pang, Hong Ye, K. N. Houk, and School of Biological Sciences
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chemistry.chemical_classification ,Sulfotransferase ,Antibiotics, Antineoplastic ,General Chemistry ,Computational biology ,Biosynthesis ,Biochemistry ,Catalysis ,Biosynthetic Pathways ,Evolvability ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Enzyme ,Biological sciences::Microbiology [Science] ,chemistry ,Non canonical ,Biological sciences::Biochemistry [Science] ,Multigene Family ,Gene cluster ,Natural Product ,Enediyne ,Enediynes ,Gene - Abstract
We report the genome-guided discovery of sungeidines, a class of microbial secondary metabolites with unique structural features. Despite evolutionary relationships with dynemicin-type enediynes, the sungeidines are produced by a biosynthetic gene cluster (BGC) that exhibits distinct differences from known enediyne BGCs. Our studies suggest that the sungeidines are assembled from two octaketide chains that are processed differently than those of the dynemicin-type enediynes. The biosynthesis also involves a unique activating sulfotransferase that promotes a dehydration reaction. The loss of genes, including a putative epoxidase gene, is likely to be the main cause of the divergence of the sungeidine pathway from other canonical enediyne pathways. The findings disclose the surprising evolvability of enediyne pathways and set the stage for characterizing the intriguing enzymatic steps in sungeidine biosynthesis. Submitted/Accepted version
- Published
- 2020
31. Total Synthesis of (−)-Nodulisporic Acids D, C, and B: Evolution of a Unified Synthetic Strategy
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Jason Melvin, Amos B. Smith, Yike Zou, Simon Berritt, Xiangqin Li, Matthew Spafford, Yun Yang, and Stephen S. Gonzales
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inorganic chemicals ,Indole test ,Allylic rearrangement ,Indoles ,Alkylation ,010405 organic chemistry ,Stereochemistry ,Chemistry ,Extramural ,Total synthesis ,Stereoisomerism ,Oxidation reduction ,General Chemistry ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Biochemistry ,Article ,Catalysis ,0104 chemical sciences ,Colloid and Surface Chemistry ,Cyclization ,Oxidation-Reduction - Abstract
A unified synthetic strategy leading to the total synthesis of (−)-nodulisporic acids D, C, and B is described. Key synthetic transformations include a nickel-chromium mediated cyclization, an aromatic ring functionalization employing a novel copper-promoted alkylation, a palladium-catalyzed cross coupling cascade/indole ring construction, and a palladium-mediated regio- and diastereoselective allylic substitution/cyclization reaction, the latter to construct ring-D.
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- 2018
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32. A Computational Investigation of the Ligand-Controlled Cu-Catalyzed Site-Selective Propargylation and Allenylation of Carbonyl Compounds
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Nitinchandra D. Patel, Marisa C. Kozlowski, Osvaldo Gutierrez, Chris H. Senanayake, Carl A. Busacca, Keith R. Fandrick, C. Avery Sader, Daniel R. Fandrick, and Yike Zou
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Letter ,Molecular Structure ,010405 organic chemistry ,Ligand ,Chemistry ,Site selectivity ,Organic Chemistry ,Ketones ,Ligands ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Combinatorial chemistry ,Catalysis ,0104 chemical sciences ,Alkadienes ,Site selective ,Organic chemistry ,Physical and Theoretical Chemistry ,Copper - Abstract
A copper-catalyzed site-selective propargylation/allenylation reaction toward carbonyl compounds has been mechanistically investigated using a computational approach. Different reaction pathways and catalytic cycles were investigated. Control of the site selectivity arises from a destabilizing interaction introduced by the phenyl-substituted ligand.
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- 2017
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33. Total synthesis of architecturally complex indole terpenoids: strategic and tactical evolution
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Amos B. Smith and Yike Zou
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Pharmacology ,Indole test ,Indoles ,Terpenes ,010405 organic chemistry ,Chemistry ,Stereochemistry ,Total synthesis ,Chemistry Techniques, Synthetic ,010402 general chemistry ,01 natural sciences ,Article ,Terpenoid ,0104 chemical sciences ,Terpene ,Anti-Infective Agents ,Drug Discovery ,Animals ,Humans ,Organic chemistry ,Cattle ,Diterpenes - Abstract
Indole terpenes have attracted the interests of synthetic chemists due to their complex architectures and potent biological activities. Examples of total syntheses of several indole terpenes were reviewed in this article to honor Professor K.C. Nicolaou.
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- 2017
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34. Sesquiterpenoids from the Chinese endangered plant Manglietia aromatica
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Wen-Xuan Wang, Juan Xiong, Qi-Bing Mei, Yike Zou, Li-Jun Wang, and Jin-Feng Hu
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biology ,Traditional medicine ,Botany ,Manglietia aromatica ,Endangered species ,Plant Science ,biology.organism_classification ,Agronomy and Crop Science ,Biochemistry ,Inhibitory effect ,Biotechnology ,Magnoliaceae - Abstract
One new bourbonane-type ( 1 ) and one new cadinane-type ( 2 ) sesquiterpenoids, along with one known aromodendrane-type ( 3 ) and five known megastigmane-type ( 4 – 8 ) compounds, were isolated from the leaves and twigs of Manglietia aromatica , a Chinese endangered plant that has not been previously phytochemically investigated. The structures and absolute configurations of the new isolates, (1 R ,4 S ,5 S ,6 S ,7 S, 10 S )-4-hydroxy-bourbon-8-one ( 1 ) and (1 R ,6 S ,7 S )-1-hydroxy- cadin-4,9-dien-8-one ( 2 ), were established by means of spectroscopic methods and a combination of experimental and calculated electronic circular dichroism (ECD). Among the isolates, compound 2 was found to show a moderate inhibitory effect against the human protein tyrosine phosphatase 1 B (PTP1B) enzyme, a target for the treatment of type-II diabetes and obesity, with an IC 50 value of 83.5 μM.
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- 2016
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35. Formation of H3+ from hydrocarbon dications induced by collisions with charged particles
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Bin Wang, Wandong Yu, Bing Yan, Baoren Wei, Chuan-Lu Yang, Yi Zhang, Long Wei, Yike Zou, and Li Chen
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Physics ,Electron ,Activation energy ,Kinetic energy ,01 natural sciences ,Quantum chemistry ,Charged particle ,Dissociation (chemistry) ,010305 fluids & plasmas ,Ion ,0103 physical sciences ,Atomic physics ,010306 general physics ,Spectroscopy - Abstract
Formation mechanism of ${\mathrm{H}}_{3}^{+}$ ions from doubly charged hydrocarbons ($\mathrm{C}{\mathrm{H}}_{4}$ and ${\mathrm{C}}_{2}{\mathrm{H}}_{4}$) is investigated by combining charged particle (300 eV electrons and 3 keV/u ${\mathrm{Ar}}^{8+}$ ions) collision experiments and quantum chemistry calculations. The kinetic energy release (KER) distribution for each ${\mathrm{H}}_{3}^{+}$ loss process was measured with the cold target recoil ion momentum spectroscopy. The good agreement between the mean KER and corresponding theoretical reverse activation energy, related to a transition state and the asymptote of the dissociation products, provides information on the ${\mathrm{H}}_{3}^{+}$ formation dynamics. A ${\mathrm{H}}_{2}$ roaming mechanism is proposed for the formation of ${\mathrm{H}}_{3}^{+}$. Since the hydrocarbons in the interaction with charged particles have direct interests in astronomical environments, the finding of this work would be helpful in the understanding of the energetics and dynamics of ${\mathrm{H}}_{3}^{+}$ formation in space.
- Published
- 2019
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36. Three-fragment dissociation of C2H22+ and C2H23+ produced by slow- Ar8+ -ion impact
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Yike Zou, Baoren Wei, Bin Wang, Wandong Yu, Yi Zhang, Long Wei, Shaowen Chen, Li Chen, and T. Jiang
- Subjects
Physics ,Crystallography ,Electron capture ,0103 physical sciences ,Dalitz plot ,010306 general physics ,Kinetic energy ,01 natural sciences ,Dissociation (chemistry) ,010305 fluids & plasmas ,Ion - Abstract
Three-fragment dissociation dynamics of ${\mathrm{C}}_{2}{\mathrm{H}}_{2}{}^{2+}$ dications and ${\mathrm{C}}_{2}{\mathrm{H}}_{2}{}^{3+}$ trications induced by electron capture of slow (3-keV/u) ${\mathrm{Ar}}^{8+}$ ions are investigated. Using cold target recoil ion momentum spectroscopy, the complete kinematic information and thus kinetic energy releases are determined for the three-fragment channels, ${\mathrm{C}}_{2}{\mathrm{H}}_{2}{}^{2+}\ensuremath{\rightarrow}{\mathrm{H}}^{+}+{\mathrm{C}}_{2}{}^{+}+\mathrm{H}$ and ${\mathrm{C}}_{2}{\mathrm{H}}_{2}{}^{3+}\ensuremath{\rightarrow}{\mathrm{H}}^{+}+{\mathrm{C}}_{2}{}^{+}+{\mathrm{H}}^{+}$. Then by analyzing the complete kinematics with a Dalitz plot and Newton diagram, different fragmentations, i.e., concerted or sequential pathway, are identified. For dications, the sequential fragmentation ${\mathrm{C}}_{2}{\mathrm{H}}_{2}{}^{2+}\ensuremath{\rightarrow}{\mathrm{H}}^{+}+{\mathrm{C}}_{2}{\mathrm{H}}^{+}\ensuremath{\rightarrow}{\mathrm{H}}^{+}+{\mathrm{C}}_{2}{}^{+}+\mathrm{H}$ is dominant. However, the trications mainly dissociate via the synchronous concerted fragmentation. The sequential pathway ${\mathrm{C}}_{2}{\mathrm{H}}_{2}{}^{3+}\ensuremath{\rightarrow}{\mathrm{H}}^{+}+{\mathrm{C}}_{2}{\mathrm{H}}^{2+}\ensuremath{\rightarrow}{\mathrm{H}}^{+}+{\mathrm{C}}_{2}{}^{+}+{\mathrm{H}}^{+}$, which was found to be significant at higher collision velocities, is not observed here. This distinction reveals the important role of projectile velocity on the fragmentation dynamics for some specific channels.
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- 2019
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37. Factors Controlling Reactivity in the Hydrogen Atom Transfer and Radical Addition Steps of a Radical Relay Cascade
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Yifan Deng, K. N. Houk, Yike Zou, Xiao-Song Xue, and Amos B. Smith
- Subjects
Radical ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Biochemistry ,Article ,law.invention ,Relay ,law ,Transfer (computing) ,Reactivity (chemistry) ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,010405 organic chemistry ,Alkene ,Organic Chemistry ,Atom (order theory) ,Hydrogen Bonding ,Hydrogen atom ,0104 chemical sciences ,Kinetics ,chemistry ,Cascade ,Chemical Sciences ,Hydrogen - Abstract
DFT exploration of 1,5- and 1,6-hydrogen atom transfers (HAT), radical addition, and relay to alkene is reported. The reactivity of 1,5- and 1,6-HAT are similar. We also explored reactions involving a multiple radical transferring process. Initially generated radicals undergo a multiple HAT process to form multiple bonds in a “relay” fashion, provided by exquisitely balanced rates.
- Published
- 2019
38. Origins of Selective Formation of 5-Vinyl-2-methylene Furans from Oxyallyl/Diene (3+2) Cycloadditions with Pd(0) Catalysis
- Author
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Yike Zou, Kendall N. Houk, and Shuming Chen
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Diene ,Chemistry ,Migratory insertion ,General Chemistry ,Conjugated system ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Medicinal chemistry ,Catalysis ,Reductive elimination ,0104 chemical sciences ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Electrophile ,Reactivity (chemistry) ,Methylene ,HOMO/LUMO - Abstract
The (3+2) cycloadditions between electron-deficient Pd-oxyallyls and conjugated dienes have been investigated with density functional theory calculations. A stepwise mechanism with C-C bond formation occurring first is supported by computations. The key electron-withdrawing ester substituent on the Pd-oxyallyl species decreases the migratory insertion barrier by both lowering the LUMO energy and enabling a less-strained six-membered coordination mode. The lack of (3+2) reactivity with monoenes is attributed to higher migratory insertion barriers due to a lower-energy HOMO, as well as high C-O reductive elimination barriers, which become rate-determining. Conjugated dienes enable the formation of a highly electrophilic η3 Pd-allyl species and greatly facilitates C-O formation.
- Published
- 2019
39. Observation of indirect ionization of W7+ in an electron-beam ion-trap plasma
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Jiang Xiao, Chong Yang Chen, Meichun Li, Jing He, Yue-Mei Yang, B. Tu, Q. Lu, J. G. Li, Yike Zou, Ke Yao, and H. Tian
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Physics ,Configuration interaction ,01 natural sciences ,Spectral line ,010305 fluids & plasmas ,Ion ,Metastability ,Ionization ,0103 physical sciences ,Physics::Atomic Physics ,Ionization energy ,Atomic physics ,010306 general physics ,Energy (signal processing) ,Electron beam ion trap - Abstract
In this work, visible and extreme ultraviolet spectra of ${\mathrm{W}}^{7+}$ are measured using the high-temperature superconducting electron-beam ion trap (EBIT) at the Shanghai EBIT Laboratory under extremely low-energy conditions (lower than the nominal electron-beam energy of 130 eV). The relevant atomic structure is calculated using the flexible atomic code package based on the relativistic configuration interaction method. The grasp2k code, in the framework of the multiconfiguration Dirac-Hartree-Fock method, is employed as well for calculating the wavelength of the M1 transition in the ground configuration of ${\mathrm{W}}^{7+}$. A line from the ${\mathrm{W}}^{7+}$ ions is observed at a little higher electron-beam energy than the ionization potential for ${\mathrm{W}}^{4+}$, making this line appear to be from ${\mathrm{W}}^{5+}$. A hypothesis for the charge-state evolution of ${\mathrm{W}}^{7+}$ is proposed based on our experimental and theoretical results; that is, the occurrence of ${\mathrm{W}}^{7+}$ ions results from indirect ionization caused by stepwise excitation between some metastable states of lower-charge-state W ions, at the nominal electron-beam energy of 59 eV.
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- 2019
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40. Generation of Dithianyl and Dioxolanyl Radicals Using Photoredox Catalysis: Application in the Total Synthesis of the Danshenspiroketallactones via Radical Relay Chemistry
- Author
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Amos B. Smith, Yifan Deng, K. N. Houk, Yike Zou, and Minh D. Nguyen
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Light ,Polymers ,Radical ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Article ,Catalysis ,law.invention ,Turn (biochemistry) ,Polyol ,Relay ,law ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Photoredox catalysis ,Total synthesis ,Hydrogen atom ,Photochemical Processes ,Combinatorial chemistry ,0104 chemical sciences ,Chemical Sciences ,Surface modification ,Hydrogen - Abstract
Visible-light-induced generation of dithianyl and dioxolanyl radicals via selective hydrogen atom transfer (HAT) has been achieved. This radical relay tactic enables remote C(sp(3))—H functionalization to permit rapid access to polyol and spiroketal segments, and in turn has been exploited as a key synthetic construct in the total synthesis of the danshenspiroketallactones. The conformational stability of the danshenspiroketallactones has also been defined via experiments and DFT calculations.
- Published
- 2019
41. Lycofargesiines A-F, further Lycopodium alkaloids from the club moss Huperzia fargesii
- Author
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Hai-Yan Zhang, Juan Xiong, Jin-Feng Hu, Qi-Lian Yang, Yike Zou, Ezzat E.A. Osman, Xin-Yi Wang, Wen-Xuan Wang, and Wei-Jia Meng
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0106 biological sciences ,Models, Molecular ,Lycopodium ,Circular dichroism ,Double bond ,Stereochemistry ,Molecular Conformation ,Plant Science ,Horticulture ,Ring (chemistry) ,01 natural sciences ,Biochemistry ,Nitrone ,Alkaloids ,medicine ,Molecular Biology ,Huperzine A ,chemistry.chemical_classification ,biology ,010405 organic chemistry ,Lycopodiaceae ,Chemistry ,General Medicine ,biology.organism_classification ,Huperzia ,0104 chemical sciences ,Cholinesterase Inhibitors ,010606 plant biology & botany ,medicine.drug - Abstract
Six undescribed Lycopodium alkaloids (LAs) comprising four lycodine-type (lycofargesiines A–D), one lycopodine-type (lycofargesiine E), and a phlegmarine-type (lycofargesiine F), together with 16 known ones were isolated from the club moss Huperzia fargesii. Their structures and absolute configurations were determined by extensive spectroscopic methods, electronic circular dichroism (ECD) analysis, and density functional theory (DFT) calculations. (7S,8R,12R,13R)-Lycofargesiine A is a rare naturally occurring LA possessing an exocyclic double bond between C-15 and C-16, with ring A being a rare 2,3-dihyropyridone motif. Lycofargesiine D is an uncommon lycodine-type alkaloid featuring a unique N-acetylated tetrahydropyridinyl segment (ring A), whereas lycofargesiine F is the first phlegmarane-type LA bearing two nitrone moieties. In addition to the isolated huperzine A in this study, another two isolates (lycofargesiine C and 16-hydroxyhuperzine A) were also found to show inhibitory activities against acetylcholinesterase (AChE), with IC50 values of 8.63 and 5.18 μM, respectively.
- Published
- 2019
42. Measurement of Absolute Single and Double Electron Capture Cross Sections for O6+ Ion Collisions with CO2, CH4, H2, and N2
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J. Xiao, Baoren Wei, Yike Zou, Long Wei, Li Chen, Baihui Ren, Wandong Yu, Yong Zhang, Bin Wang, and Jie Han
- Subjects
Physics ,Space and Planetary Science ,Electron capture ,Astronomy and Astrophysics ,Atomic physics ,Ion - Abstract
The absolute electron capture cross sections for single and double charge exchanges (CEs) between the highly charged ion O6+ and CO2, CH4, H2, and N2, the dominant collision processes in the solar wind, have been measured in the energies from 7 keV · q (2.63 keV u−1) to 52 keV · q (19.5 keV u−1). These measurements were carried out in the new experimental instrument setup at Fudan University, and the errors of the cross sections for single and double CEs at the 1σ confidence level were about 11% and 16%, respectively. Limited agreement is achieved with single electron capture results calculated by the classical overbarrier model. These cross section data are useful for the simulation of ion–neutral processes in astrophysical environments and to improve the present theoretical model of fundamental atomic processes.
- Published
- 2021
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43. Palhicerines A–F, Lycopodium alkaloids from the club moss Palhinhaea cernua
- Author
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Jin-Feng Hu, Juan Xiong, Yike Zou, Yu Tang, and Hai-Yan Zhang
- Subjects
Circular dichroism ,Lycopodium ,Stereochemistry ,Molecular Conformation ,Plant Science ,Horticulture ,Crystallography, X-Ray ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Molecular conformation ,chemistry.chemical_compound ,Alkaloids ,Genus ,Lycopodiaceae ,Nuclear Magnetic Resonance, Biomolecular ,Molecular Biology ,Molecular Structure ,biology ,010405 organic chemistry ,General Medicine ,biology.organism_classification ,Moss ,0104 chemical sciences ,chemistry ,Chemotaxonomy ,Quinolizines ,Methyl group - Abstract
Four fawcettimine-type (palhicerines A-D, resp.) and two lycopodine-type (palhicerines E and F) Lycopodium alkaloids together with twenty known ones were isolated from the whole plant of Palhinhaea cernua. The structures and absolute configurations of the palhicerines A-F were determined by extensive spectroscopic methods, single-crystal X-ray diffraction analyses, chemical transformation, and electronic circular dichroism (ECD) calculations or induced electronic circular dichroism (IECD) spectra. Among the isolates, the new C/D-ring of the palhicerines A-C (trans-fused fawcettimine-type alkaloids) are rare, and each possesses a β-oriented C-16 methyl group and a distinctive tertiary methoxy group at C-13. Chemotaxonomy for differentiating species in the genus Palhinhaea is briefly discussed.
- Published
- 2016
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44. Palcernuine, the first [5/6/6/6]-cernuane-type alkaloid from Palhinhaea cernua f. sikkimensis
- Author
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Bastien Nay, Jin-Feng Hu, Yu Tang, Yike Zou, Li-Jun Wang, and Juan Xiong
- Subjects
Circular dichroism ,biology ,010405 organic chemistry ,Lycopodiaceae ,Chemistry ,Stereochemistry ,Alkaloid ,Absolute configuration ,General Chemistry ,010402 general chemistry ,biology.organism_classification ,Ring (chemistry) ,01 natural sciences ,0104 chemical sciences - Abstract
One novel (named palcernuine, 1) and five known cernuane-type (2–6) alkaloids were isolated from the whole plant of Palhinhaea cernua f. sikkimensis. The structure of 1, possessing an unprecedented [5/6/6/6]-tetracyclic ring system containing two nitrogen atoms, was established on the basis of spectroscopic methods, and its absolute configuration was determined by comparison of the experimental and calculated electronic circular dichroism (ECD) spectra. A plausible biosynthetic pathway to 1 is proposed.
- Published
- 2016
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45. Diterpenoids from the shed trunk barks of the endangered plant Pinus dabeshanensis and their PTP1B inhibitory effects
- Author
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Huaqiang Zeng, Juan Xiong, Li-Xin Gao, Yike Zou, Chang-Ling Hu, Jia Li, and Jin-Feng Hu
- Subjects
chemistry.chemical_classification ,Bicyclic molecule ,010405 organic chemistry ,Chemistry ,Stereochemistry ,General Chemical Engineering ,Endangered species ,General Chemistry ,Inhibitory postsynaptic potential ,01 natural sciences ,Protein Tyrosine Phosphatase 1B ,0104 chemical sciences ,%22">Pinus ,010404 medicinal & biomolecular chemistry ,Enzyme ,visual_art ,Ic50 values ,visual_art.visual_art_medium ,Bark - Abstract
Rare and endangered plants have proven to be better sources for drug discovery than other botanic sources. Pinus dabeshanensis is an endangered plant listed in the China Plant Red Data Book, and has never been phytochemically investigated. In the present study, 11 new (dabeshanensins A–K, 1–11, resp.) and 28 related known naturally occurring diterpenoids were isolated from the shed trunk bark of this plant. The new structures were established by extensive spectroscopic methods and molecular modeling. Among them, dabeshanensin C (3) has an unprecedented bicyclo[3.3.1]nonane ring system (rings B and C) by oxidative cleavage of the C-6/C-7 bond followed by the formation of a new C–C bond between C-6 and C-12. The plausible biosynthetic pathway to 3 is briefly discussed. Dabeshanensins A (1) and J (10), 12-hydroxydehydroabietic acid (33), abieta-8,11,13,15-tetraen-18-oic acid (35), and 15-hydroxy-7-oxo-8,11,13-abietatrien-18-oic acid (37) showed significant inhibitory effects against the human protein tyrosine phosphatase 1B (PTP1B) enzyme, a key target for the treatment of type-II diabetes and obesity, with IC50 values ranging from 5.4 to 50.9 μM.
- Published
- 2016
- Full Text
- View/download PDF
46. Total Synthesis of (−)-Enigmazole A
- Author
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Amos B. Smith, Yanran Ai, Anton S. Khartulyari, Yike Zou, and Mariya V. Kozytska
- Subjects
Molecular Structure ,Chemistry ,Stereochemistry ,Communication ,Metabolite ,Total synthesis ,General Chemistry ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Organophosphorus Compounds ,Colloid and Surface Chemistry ,Stereoselectivity ,Macrolides ,Oxazoles - Abstract
A highly convergent, stereocontrolled total synthesis of the architecturally complex marine sponge metabolite (-)-enigmazole A has been achieved. Highlights include an unprecedented late-stage large-fragment Petasis-Ferrier union/rearrangement, a multicomponent Type I Anion Relay Chemistry (ARC) tactic, and a dithiane-epoxide union in conjunction with an oxazole-directed stereoselective reduction.
- Published
- 2015
- Full Text
- View/download PDF
47. Nonenzymatic Stereoselective S-Glycosylation of Polypeptides and Proteins.
- Author
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Li-Qiang Wan, Xia Zhang, Yike Zou, Rong Shi, Jin-Ge Cao, Shi-Yang Xu, Li-Fan Deng, Li Zhou, Yanqiu Gong, Xiaoling Shu, Ga Young Lee, Haiyan Ren, Lunzhi Dai, Shiqian Qi, Houk, K. N., and Dawen Niu
- Published
- 2021
- Full Text
- View/download PDF
48. Total Synthesis of the Marine Phosphomacrolide, (-)-Enigmazole A, Exploiting Multicomponent Type I Anion Relay Chemistry (ARC) in Conjunction with a Late-Stage Petasis-Ferrier Union/Rearrangement
- Author
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Amos B. Smith, Anton S. Khartulyari, William A. Maio, Yanran Ai, Mariya V. Kozytska, and Yike Zou
- Subjects
010402 general chemistry ,01 natural sciences ,Article ,Ion ,law.invention ,Arc (geometry) ,Organophosphorus Compounds ,Relay ,law ,Oxazoles ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Extramural ,Organic Chemistry ,Late stage ,Temperature ,Total synthesis ,Oxidation reduction ,Stereoisomerism ,Hydrogen-Ion Concentration ,Combinatorial chemistry ,0104 chemical sciences ,Cyclization ,Macrolides ,Oxidation-Reduction - Abstract
An effective late-stage large-fragment union/rearrangement exploiting the Petasis–Ferrier protocol, in conjunction with multicomponent Type I Anion Relay Chemistry (ARC) to access advanced intermediates, permits completion of a convergent, stereocontrolled total synthesis of the architecturally complex phosphomacrolide (−)-enigmazole A (1).
- Published
- 2018
49. Penthorin A and B, two unusual 2,4′-epoxy-8,5′-neolignans from Penthorum chinese
- Author
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Ya-Cong He, Cheng-Jun He, Xiao-Fang Xie, Jian-Lin Liu, Li Guo, Yike Zou, Cheng Peng, and Liang Xiong
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Pharmacology ,Circular dichroism ,Molecular Structure ,biology ,Stereochemistry ,Saxifragaceae ,Absolute configuration ,Ethyl acetate ,Decoction ,General Medicine ,Epoxy ,biology.organism_classification ,Lignans ,Cell Line ,Penthorum ,chemistry.chemical_compound ,chemistry ,visual_art ,Drug Discovery ,Hepatocytes ,visual_art.visual_art_medium ,Humans ,Acetaminophen - Abstract
Two new 2,4'-epoxy-8,5'-neolignans (1 and 2), together with five known 7,9';7',9-diepoxylignans (3-7), were isolated from an ethyl acetate soluble portion of a hepatoprotective water decoction of Penthorum chinese. Their structures and absolute configurations were elucidated by extensive spectroscopic analyses and electronic circular dichroism (ECD) calculations. This is the second report of 2,4'-epoxy-8,5'-neolignans from plants. Compounds 2, 6, and 7 showed in vitro protective activities against acetaminophen-induced hepatocyte injury at 5 μM.
- Published
- 2015
- Full Text
- View/download PDF
50. Annotinolide F and lycoannotines A-I, further Lycopodium alkaloids from Lycopodium annotinum
- Author
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Yu Tang, Jin-Feng Hu, Juan Xiong, Yike Zou, Chao Huang, Wei Wang, and Hai-Yan Zhang
- Subjects
Lycopodium ,Chemical transformation ,Circular dichroism ,Stereochemistry ,Plant Science ,Horticulture ,010402 general chemistry ,Crystallography, X-Ray ,01 natural sciences ,Biochemistry ,Alkaloids ,Lycopodium annotinum ,Molecular Biology ,Bond cleavage ,biology ,Molecular Structure ,010405 organic chemistry ,Lycopodiaceae ,Chemistry ,Alkaloid ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,Cholinesterase Inhibitors ,Quinolizines - Abstract
Seven lycopodine-type (annotinolide F and lycoannotines A–F), two lycodine-type (lycoannotines G and H), and one fawcettimine-type (lycoannotine I) previously undescribed naturally occurring Lycopodium alkaloids together with thirteen known ones were isolated from the whole plant of Lycopodium annotinum. Their structures and absolute configurations were determined by extensive spectroscopic methods, single-crystal X-ray diffraction, chemical transformation, and electronic circular dichroism (ECD) calculations. Among the isolates, annotinolide F, lycoannotines A and B are unusual 7,8-seco-lycopodane derivatives, and annotinolide F even further possesses a rare 8,5-lactone framework through a lactonization after the C-7/C-8 bond cleavage. Lycoannotine C is an uncommon 8,15-seco lycopodine-type alkaloid, whereas lycoannotine I represents the first example of a naturally occurring C-9/N bond cleavage product of fawcettimine-type alkaloid. Among them, only lycoannotine I was found to show considerable anti-butyrylcholinesterase (anti-BuChE) activity.
- Published
- 2017
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