45 results on '"Yi-Fang Chiu"'
Search Results
2. New Structural and Mechanistic Insights Into Functional Roles of Cytochrome b559 in Photosystem II
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Yi-Fang Chiu and Hsiu-An Chu
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photosynthesis ,photosystem II ,cytochrome b559 ,site-directed mutagenesis ,photoprotection ,photoinhibition ,Plant culture ,SB1-1110 - Abstract
Cytochrome (Cyt) b559 is a key component of the photosystem II (PSII) complex for its assembly and proper function. Previous studies have suggested that Cytb559 has functional roles in early assembly of PSII and in secondary electron transfer pathways that protect PSII against photoinhibition. In addition, the Cytb559 in various PSII preparations exhibited multiple different redox potential forms. However, the precise functional roles of Cytb559 in PSII remain unclear. Recent site-directed mutagenesis studies combined with functional genomics and biochemical analysis, as well as high-resolution x-ray crystallography and cryo-electron microscopy studies on native, inactive, and assembly intermediates of PSII have provided important new structural and mechanistic insights into the functional roles of Cytb559. This mini-review gives an overview of new exciting results and their significance for understanding the structural and functional roles of Cytb559 in PSII.
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- 2022
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3. Comparative Genomic Analysis of a Novel Strain of Taiwan Hot-Spring Cyanobacterium Thermosynechococcus sp. CL-1
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Yen-I Cheng, Lin Chou, Yi-Fang Chiu, Hsin-Ta Hsueh, Chih-Horng Kuo, and Hsiu-An Chu
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cyanobacterium ,Thermosynechococcus ,genome ,comparative genomics ,thermophilic cyanobacterium ,adaption ,Microbiology ,QR1-502 - Abstract
Thermosynechococcus is a genus of thermophilic unicellular cyanobacteria that are dominant in microbial mats at about 50–65°C in alkaline hot springs of eastern Asia. We used PacBio SMRT Sequencing to sequence the complete genome of a novel strain of thermophilic cyanobacterium, Thermosynechococcus sp. CL-1, isolated from the Chin-Lun hot spring (pH 9.3, 62°C) in Taiwan. Genome-scale phylogenetic analysis and average nucleotide identity (ANI) results suggested that CL-1 is a new species in the genus Thermosynechococcus. Comparative genome analysis revealed divergent genome structures of Thermosynechococcus strains. In addition, the distinct genetic differences between CL-1 and the other Thermosynechococcus strains are related to photosynthesis, transporters, signal transduction, the chaperone/usher system, nitric oxide protection, antibiotic resistance, prokaryotic immunity systems, and other physiological processes. This study suggests that Thermosynechococcus strains have actively acquired many putative horizontally transferred genes from other bacteria that enabled them to adapt to different ecological niches and stressful conditions in hot springs.
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- 2020
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4. Separate Clock Network Voltage for Correcting Random Errors in ULV Clocked Storage Cells.
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Shien-Chun Luo, Kuo-Chiang Chang, Ming-Pin Chen, Ching-Ji Huang, Yi-Fang Chiu, Po-Hsun Chen, Liang-Chia Cheng, Chih-Wei Liu, and Yuan-Hua Chu
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- 2014
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5. A Scalable Power Modeling Approach for Embedded Memory Using LIB Format.
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Wen-Tsan Hsieh, Chi-Chia Yu, Chien-Nan Jimmy Liu, and Yi-Fang Chiu
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- 2006
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6. Exploring the Acoustic Perceptual Relationship of Speech in Parkinson's Disease
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Amy T. Neel, Travis M. Loux, and Yi-Fang Chiu
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Speech Acoustics ,Auditory perception ,Linguistics and Language ,medicine.medical_specialty ,Dysarthria ,Speech Intelligibility ,Parkinson Disease ,Acoustics ,Audiology ,Language and Linguistics ,Speech and Hearing ,Formant ,Speech Production Measurement ,medicine ,Humans ,Speech ,Phonation ,medicine.symptom ,Articulation (phonetics) ,Psychology ,Prosody ,Aged - Abstract
Purpose Auditory perceptual judgments are commonly used to diagnose dysarthria and assess treatment progress. The purpose of the study was to examine the acoustic underpinnings of perceptual speech abnormalities in individuals with Parkinson's disease (PD). Method Auditory perceptual judgments were obtained from sentences produced by 13 speakers with PD and five healthy older adults. Twenty young listeners rated overall ease of understanding, articulatory precision, voice quality, and prosodic adequacy on a visual analog scale. Acoustic measures associated with the speech subsystems of articulation, phonation, and prosody were obtained, including second formant transitions, articulation rate, cepstral and spectral measures of voice, and pitch variations. Regression analyses were performed to assess the relationships between perceptual judgments and acoustic variables. Results Perceptual impressions of Parkinsonian speech were related to combinations of several acoustic variables. Approximately 36%–49% of the variance in the perceptual ratings were explained by the acoustic measures indicating a modest acoustic perceptual relationship. Conclusions The relationships between perceptual ratings and acoustic signals in Parkinsonian speech are multifactorial and involve a variety of acoustic features simultaneously. The modest acoustic perceptual relationships, however, suggest that future work is needed to further examine the acoustic bases of perceptual judgments in dysarthria.
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- 2021
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7. A high throughput 2-dimensional DCT/IDCT architecture for real-time image and video system.
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Jen-Shiun Chiang, Yi-Fang Chiu, and Teng-Hung Chang
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- 2001
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8. Assessing e-learning 2.0 system success.
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Hei-Chia Wang and Yi-Fang Chiu
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- 2011
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9. Acoustic characteristics in relation to intelligibility reduction in noise for speakers with Parkinson’s disease
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Amy T. Neel, Yi-Fang Chiu, and Travis M. Loux
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Linguistics and Language ,medicine.medical_specialty ,Parkinson's disease ,Audiology ,Intelligibility (communication) ,behavioral disciplines and activities ,Speech Acoustics ,050105 experimental psychology ,Language and Linguistics ,030507 speech-language pathology & audiology ,03 medical and health sciences ,Speech and Hearing ,Dysarthria ,Speech Production Measurement ,otorhinolaryngologic diseases ,medicine ,Humans ,0501 psychology and cognitive sciences ,Speech Intelligibility ,05 social sciences ,Parkinson Disease ,Acoustics ,medicine.disease ,Decreased speech ,medicine.symptom ,0305 other medical science ,Psychology ,psychological phenomena and processes - Abstract
Decreased speech intelligibility in noisy environments is frequently observed in speakers with Parkinson's disease (PD). This study investigated which acoustic characteristics across the speech subsystems contributed to poor intelligibility in noise for speakers with PD. Speech samples were obtained from 13 speakers with PD and five healthy controls reading 56 sentences. Intelligibility analysis was conducted in quiet and noisy listening conditions. Seventy-two young listeners transcribed the recorded sentences in quiet and another 72 listeners transcribed in noise. The acoustic characteristics of the speakers with PD who experienced large intelligibility reduction from quiet to noise were compared to those with smaller intelligibility reduction in noise and healthy controls. The acoustic measures in the study included second formant transitions, cepstral and spectral measures of voice (cepstral peak prominence and low/high spectral ratio), pitch variation, and articulation rate to represent speech components across speech subsystems of articulation, phonation, and prosody. The results show that speakers with PD who had larger intelligibility reduction in noise exhibited decreased second formant transition, limited cepstral and spectral variations, and faster articulation rate. These findings suggest that the adverse effect of noise on speech intelligibility in PD is related to speech changes in the articulatory and phonatory systems.
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- 2020
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10. Interlimb Arm-Swing Asymmetry During Dual-Task Gait Has Prognostic Value for Cognitive Decline in Parkinson's Disease
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Jemma Kim, John Rider, Michael Gevertzman, Yi-Fang Chiu, Lauren Schwarz, Momina Soudagar-Turkey, Merrill Landers, and Jason Longhurst
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Rehabilitation ,Physical Therapy, Sports Therapy and Rehabilitation - Published
- 2023
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11. An Efficient Approach with Scaling Capability to Improve Existing Memory Power Model.
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Wen-Tsan Hsieh, Chi-Chia Yu, Chien-Nan Jimmy Liu, and Yi-Fang Chiu
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- 2007
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12. Spoken word recognition in listeners with mild dementia symptoms
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Katrina Sue McClannahan, Amelia Mainardi, Austin Luor, Yi-Fang Chiu, Mitchell S. Sommers, and Jonathan E. Peelle
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Psychiatry and Mental health ,Clinical Psychology ,General Neuroscience ,Speech Perception ,otorhinolaryngologic diseases ,Humans ,Dementia ,General Medicine ,Geriatrics and Gerontology ,Noise ,Article ,psychological phenomena and processes ,Aged - Abstract
BackgroundDifficulty understanding speech is a common complaint of older adults. In quiet, speech perception is often assumed to be relatively automatic. In background noise, however, higher-level cognitive processes play a more substantial role in successful communication. Cognitive resources are often limited in adults with dementia, which may therefore hamper word recognition. ObjectiveThe goal of this study was to determine the impact of mild dementia on spoken word recognition in quiet and noise.MethodsParticipants were adults aged 53–86 years with (n=16) or without (n=32) dementia symptoms as classified by a clinical dementia rating scale. Participants performed a word identification task with two levels of neighborhood density in quiet and in speech shaped noise at two signal-to-noise ratios (SNRs), +6 dB and +3 dB. Our hypothesis was that listeners with mild dementia would have more difficulty with speech perception in noise under conditions that tax cognitive resources. ResultsListeners with mild dementia had poorer speech perception accuracy in both quiet and noise, which held after accounting for differences in age and hearing level. Notably, even in quiet, adults with dementia symptoms correctly identified words only about 80% of the time. However, phonological neighborhood density was not a factor in the identification task performance for either group.ConclusionThese results affirm the difficulty that listeners with mild dementia have with spoken word recognition, both in quiet and in background noise, consistent with a key role of cognitive resources in spoken word identification. However, the impact of neighborhood density in these listeners is less clear.
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- 2021
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13. Relationship Between F2 Slope and Intelligibility in Parkinson's Disease: Lexical Effects and Listening Environment
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Karen Forrest, Travis M. Loux, and Yi-Fang Chiu
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Male ,Auditory perception ,Linguistics and Language ,medicine.medical_specialty ,Speech production ,Parkinson's disease ,Signal-To-Noise Ratio ,Audiology ,Intelligibility (communication) ,Speech Acoustics ,030507 speech-language pathology & audiology ,03 medical and health sciences ,Speech and Hearing ,0302 clinical medicine ,Developmental and Educational Psychology ,medicine ,Humans ,Active listening ,030223 otorhinolaryngology ,Aged ,Dysarthria ,Speech Intelligibility ,Parkinson Disease ,Middle Aged ,medicine.disease ,Otorhinolaryngology ,Case-Control Studies ,Auditory Perception ,Female ,0305 other medical science ,Psychology - Abstract
Purpose There is a complex relationship between speech production and intelligibility of speech. The current study sought to evaluate the interaction of the factors of lexical characteristics, listening environment, and the 2nd formant transition (F2 slope) on intelligibility of speakers with Parkinson's disease (PD). Method Twelve speakers with PD and 12 healthy controls read sentences that included words with the diphthongs /aɪ/, /ɔɪ/, and /aʊ/. The F2 slope of the diphthong transition was measured and averaged across the 3 diphthongs for each speaker. Young adult listeners transcribed the sentences to assess intelligibility of words with high and low word frequency and high and low neighborhood density in quiet and noisy listening conditions. The average F2 slope and intelligibility scores were entered into regression models to examine their relationship. Results F2 slope was positively related to intelligibility in speakers with PD in both listening conditions with a stronger relationship in noise than in quiet. There was no significant relationship between F2 slope and intelligibility of healthy speakers. In the quiet condition, F2 slope was only correlated with intelligibility in less-frequent words produced by the PD group. In the noise condition, F2 slope was related to intelligibility in high- and low-frequency words and high-density words in PD. Conclusions The relationship between F2 slope and intelligibility in PD was affected by lexical factors and listening conditions. F2 slope was more strongly related to intelligibility in noise than in quiet for speakers with PD. This relationship was absent in highly frequent words presented in quiet and those with fewer lexical neighbors.
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- 2019
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14. Tandem gene amplification restores photosystem II accumulation in cytochrome b
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Yi-Fang, Chiu, Han-Yi, Fu, Petra, Skotnicová, Keng-Min, Lin, Josef, Komenda, and Hsiu-An, Chu
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Gene Amplification ,Synechocystis ,Photosystem II Protein Complex ,Cytochromes b ,Cytochrome b Group - Abstract
Cytochrome (Cyt) b
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- 2021
15. Screening strategy of TMPRSS2 inhibitors by FRET-based enzymatic activity for TMPRSS2-based cancer and COVID-19 treatment
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Yeh, Chen, Wei-Chien, Huang, Chia-Shin, Yang, Fang-Ju, Cheng, Yi-Fang, Chiu, Hsiao-Fan, Chen, Thanh Kieu, Huynh, Chih-Feng, Huang, Chia-Hung, Chen, Hsueh-Chun, Wang, and Mien-Chie, Hung
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Original Article ,urologic and male genital diseases - Abstract
Transmembrane serine protease (TMPRSS2) plays an oncogenic role in prostate cancer as the fusion gene with ERG, and has also been demonstrated to be essential for the cellular entry of severe acute respiratory syndrome coronaviruses (SARS-CoV). Thus, targeting TMPRSS2 is a promising strategy for therapies against both prostate cancer and coronavirus infection. Although Nafamostat and Camostat have been identified as TMPRSS2 inhibitors, severe side effects such as cerebral hemorrhage, anaphylactoid reaction, and cardiac arrest shock greatly hamper their clinical use. Therefore, more potent and safer drugs against this serine protease should be further developed. In this study, we developed a fluorescence resonance energy transfer (FRET)-based platform for effectively screening of inhibitors against TMPRSS2 protease activity. The disruption of FRET between green and red fluorescent proteins conjugated with the substrate peptide, which corresponds to the cleavage site of SARS-CoV-2 Spike protein, was measured to determine the enzymatic activity of TMPRSS2. Through an initiate pilot screening with around 100 compounds, Flupirtine, a selective neuronal potassium channel opener, was identified as a potential TMPRSS2 inhibitor from an FDA-approved drug library by using this screening platform, and showed inhibitory effect on the TMPRSS-dependent infection of SARS-CoV-2 Spike-pseudotyped lentiviral particles. This study describes a platform proven effective for rapidly screening of TMPRSS2 inhibitors, and suggests that Flupirtine may be worthy of further consideration of repurposing to treat COVID-19 patients.
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- 2020
16. Predicting Intelligibility Deficits in Parkinson's Disease With Perceptual Speech Ratings
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Yi-Fang Chiu and Amy T. Neel
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Male ,Linguistics and Language ,medicine.medical_specialty ,Visual analogue scale ,Voice Quality ,media_common.quotation_subject ,Intelligibility (communication) ,Audiology ,Pronunciation ,Language and Linguistics ,Speech and Hearing ,Speech Production Measurement ,Perception ,medicine ,Humans ,Speech ,Active listening ,Prosody ,media_common ,Aged ,Speech Intelligibility ,Parkinson Disease ,Comprehension ,QUIET ,Case-Control Studies ,Speech Perception ,Female ,Psychology ,Noise - Abstract
Purpose This study investigated whether perceptual ratings of speech parameters were predictive of transcription intelligibility in quiet and in noise for speakers with Parkinson's disease (PD). Method Ten speakers with PD and five healthy controls read 56 sentences. One group of 60 listeners orthographically transcribed the sentences in quiet, and another group of 60 listeners transcribed in noise. An additional 23 listeners judged a variety of speech parameters, including articulation, prosody, resonance, voice quality, and ease of understanding on a visual analog scale. Scores of the visual analog scale ratings were regressed against transcription intelligibility in quiet and in noise. Results Perceptual ratings of all the speech parameters were lower for speakers with PD. Global speech understanding, indexed by ease of understanding ratings, was associated with transcription intelligibility in quiet and in noise with a stronger effect in noise. Among the rated speech parameters, ease of understanding and voice quality ratings were significant predictors of speech intelligibility in noise. Conclusions Speech in individuals with PD was more difficult for listeners to understand and was characterized by deficits in articulation, prosody, resonance, and voice quality compared to normal speech produced by healthy older adults. Ease of understanding ratings, even when performed in quiet, predicted intelligibility in noise. Poor voice quality ratings in PD, a sign of phonatory deficit, had a negative impact on intelligibility in noise for speakers with PD.
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- 2020
17. Synergistic antimetastatic effect of cotreatment with licochalcone A and sorafenib on human hepatocellular carcinoma cells through the inactivation of MKK4/JNK and uPA expression
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Wen-Jun Wu, Yi-Fang Chiu, Chung-Jung Liu, Ching-Yi Lin, Pei-Lien Wu, Yi-Hsien Hsieh, Chia-Liang Lin, and Min-Hua Wu
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0301 basic medicine ,Glycyrrhiza inflata ,Sorafenib ,Carcinoma, Hepatocellular ,Licochalcone A ,MAP Kinase Kinase 4 ,MAP Kinase Signaling System ,Health, Toxicology and Mutagenesis ,Lung metastasis ,Down-Regulation ,Mice, Nude ,Management, Monitoring, Policy and Law ,Toxicology ,Metastasis ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Chalcones ,0302 clinical medicine ,Cell Line, Tumor ,Tumor regression ,medicine ,Animals ,Humans ,Cytotoxic T cell ,biology ,Liver Neoplasms ,Drug Synergism ,General Medicine ,medicine.disease ,biology.organism_classification ,Urokinase-Type Plasminogen Activator ,Xenograft Model Antitumor Assays ,digestive system diseases ,Mice, Inbred C57BL ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Cancer research ,Drug Therapy, Combination ,medicine.drug - Abstract
To improve the clinical outcome of tumor chemotherapy, more effective combination treatments against tumor metastasis and recurrence are required. Licochalcone A (LicA) is the root of Glycyrrhiza inflata and has been reported to possess anti-inflammatory, antimicrobial, and antitumor effects. Sorafenib (Sor), a multikinase inhibitor, is used to treat patients with solid tumors such as advanced hepatocellular carcinoma (HCC). However, the synergistic effects of LicA and Sor on the metastasis of human HCC cells have not been reported. We found that LicA and Sor did not have cytotoxic effects or arrest growth in human SK-Hep-1 and Huh-7 cells. In addition, treatment with LicA or Sor alone inhibited migration and invasion in human SK-Hep-1 and Huh-7 HCC cells. Furthermore, cotreatment with LicA and Sor synergistically inhibited the migration and invasion of HCC cells and significantly inhibited uPA protein expression. Notably, cotreatment of LicA and Sor synergistically and significantly downregulated MKK4-JNK expression. Through tail vein injection in nude mice, the aforementioned cotreatment synergistically suppressed SK-Hep-1 cell-mediated lung metastasis. These findings first revealed the synergistic effects of LicA and Sor cotreatment against human HCC cells, further suggesting that beneficial effects on tumor regression could be confirmed through prospective clinical trials.
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- 2018
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18. The Impact of Lexical Characteristics and Noise on Intelligibility of Parkinsonian Speech
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Karen Forrest and Yi-Fang Chiu
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Male ,Auditory perception ,Linguistics and Language ,medicine.medical_specialty ,Audiology ,Intelligibility (communication) ,Severity of Illness Index ,Speech Disorders ,050105 experimental psychology ,Language and Linguistics ,Random Allocation ,Young Adult ,030507 speech-language pathology & audiology ,03 medical and health sciences ,Speech and Hearing ,Dysarthria ,Parkinsonian Disorders ,medicine ,Humans ,0501 psychology and cognitive sciences ,Active listening ,Speech communication ,Aged ,Speech Intelligibility ,05 social sciences ,Linguistics ,Middle Aged ,Word lists by frequency ,QUIET ,Female ,medicine.symptom ,Noise ,0305 other medical science ,Psychology - Abstract
PurposeThis study investigated the impact of lexical characteristics on the intelligibility of speakers with Parkinson's disease (PD). Intelligibility was compared for listening in a quiet versus a noisy environment.MethodA total of 192 young listeners participated in the study, with 96 listeners listening in quiet and 96 listening in noise in which the spoken sentences were mixed with 10-talker babble. The listeners transcribed spoken sentences with target words controlled for word frequency and neighborhood density. The sentences were produced by 12 speakers with PD and 12 healthy control (HC) speakers. Transcription accuracy was compared across lexical categories between PD and HC and between the two listening conditions.ResultsTranscription accuracy was higher for high-frequency words than low-frequency words for both speaker groups in quiet and in noise. The neighborhood density effect was evident only in the noise condition with better intelligibility for words from sparse neighborhoods than from dense neighborhoods. Regardless of listening condition, the PD group was less intelligible with a significant decrease in intelligibility in noise relative to quiet.ConclusionsThe lexical properties of the words affected listeners' understanding of Parkinsonian speech. Frequent words in sparse neighborhood enhanced intelligibility, especially under adverse listening conditions. Babble noise had a detrimental impact on the intelligibility of Parkinsonian speech. The extent of the lexical effect on intelligibility increased in noise.
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- 2018
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19. Regulating photoprotection improves photosynthetic growth and biomass production in QC-site mutant cells of the cyanobacterium Synechocystis sp. PCC 6803
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K.-M. Lin, Hsiu-An Chu, Jine-Yung Huang, N.-T. Hung, and Yi-Fang Chiu
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0106 biological sciences ,0301 basic medicine ,Photosystem II ,Physiology ,Chemistry ,Mutant ,Cytochrome b559 ,Photobioreactor ,Plant physiology ,Plant Science ,Photosynthetic efficiency ,Photosynthesis ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Photoprotection ,Biophysics ,010606 plant biology & botany - Abstract
We characterized the photosynthetic growth of wild-type (WT) and QC-site mutant cells of the cyanobacterium Synechocystis sp. PCC 6803 grown in a photobioreactor under medium-intensity [~70 μmol(photon) m–2 s–1] and high-intensity [~200 μmol(photon) m–2 s–1] light conditions. Photosynthetic growth rate (the exponential phase) increased about 1.1–1.2 fold for the A16FJ, S28Aβ, and V32Fβ mutant compared with WT cells under medium-intensity light and about 1.2–1.3 fold under high-intensity light. Biomass production increased about 17–20% for A16FJ and S28Aβ mutant cells as compared with WT cells under medium-intensity light and about 14–17% for A16FJ and V32Fβ mutant cells under high-intensity light. The greater photosynthetic growth rate and biomass production of these QC-site mutant cells could be attributed to the increased photosynthesis efficiency and decreased dissipation of wasteful energy from phycobilisomes in mutants vs. WT cells. Our results support that manipulation of photoprotection may improve photosynthesis and biomass production of photosynthetic organisms.
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- 2018
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20. The effect of mild dementia on speech perception in quiet and noise
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Amelia Mainardi, Mitchell S. Sommers, Kate McClannahan, Austin Luor, Yi-Fang Chiu, and Jonathan E. Peelle
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Noise ,medicine.medical_specialty ,Speech perception ,Acoustics and Ultrasonics ,Arts and Humanities (miscellaneous) ,QUIET ,Mild dementia ,medicine ,Audiology ,Psychology - Published
- 2021
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21. Comparative Genomic Analysis of a Novel Strain of Taiwan Hot-Spring Cyanobacterium
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Yen-I, Cheng, Lin, Chou, Yi-Fang, Chiu, Hsin-Ta, Hsueh, Chih-Horng, Kuo, and Hsiu-An, Chu
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cyanobacterium ,Thermosynechococcus ,adaption ,comparative genomics ,thermophilic cyanobacterium ,Microbiology ,genome ,Original Research - Abstract
Thermosynechococcus is a genus of thermophilic unicellular cyanobacteria that are dominant in microbial mats at about 50–65°C in alkaline hot springs of eastern Asia. We used PacBio SMRT Sequencing to sequence the complete genome of a novel strain of thermophilic cyanobacterium, Thermosynechococcus sp. CL-1, isolated from the Chin-Lun hot spring (pH 9.3, 62°C) in Taiwan. Genome-scale phylogenetic analysis and average nucleotide identity (ANI) results suggested that CL-1 is a new species in the genus Thermosynechococcus. Comparative genome analysis revealed divergent genome structures of Thermosynechococcus strains. In addition, the distinct genetic differences between CL-1 and the other Thermosynechococcus strains are related to photosynthesis, transporters, signal transduction, the chaperone/usher system, nitric oxide protection, antibiotic resistance, prokaryotic immunity systems, and other physiological processes. This study suggests that Thermosynechococcus strains have actively acquired many putative horizontally transferred genes from other bacteria that enabled them to adapt to different ecological niches and stressful conditions in hot springs.
- Published
- 2019
22. Test-Retest Reliability of Audiometric Assessment in Individuals With Mild Dementia
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Yi Fang Chiu, Mitchell S. Sommers, Katrina S. McClannahan, and Jonathan E. Peelle
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Male ,medicine.medical_specialty ,Hearing loss ,Otoacoustic Emissions, Spontaneous ,Audiology ,01 natural sciences ,Disability Evaluation ,03 medical and health sciences ,0302 clinical medicine ,Bone conduction ,Audiometry ,0103 physical sciences ,otorhinolaryngologic diseases ,medicine ,Humans ,Online First ,Dementia ,Hearing Loss ,030223 otorhinolaryngology ,Acoustic reflex ,010301 acoustics ,Aged ,Original Investigation ,Aged, 80 and over ,medicine.diagnostic_test ,business.industry ,Research ,Reproducibility of Results ,Auditory Threshold ,Cognition ,Middle Aged ,Tympanometry ,medicine.disease ,Cross-Sectional Studies ,Acoustic Impedance Tests ,Otorhinolaryngology ,Speech Perception ,Female ,Surgery ,Alzheimer's disease ,medicine.symptom ,business ,Comments - Abstract
Key Points Question Are the measures used in standard hearing assessments reliable in individuals with mild dementia? Findings This cross-sectional study that included 15 adults with mild dementia and 32 adults with normal cognitive function found high test-retest reliability for hearing thresholds, hearing handicap assessment, and several physiological measures typically included in a standard audiology test battery. Meaning This study suggests that hearing assessments completed under ideal conditions are reliable in adults with mild dementia., Importance Accurate assessment of hearing is critically important regardless of a person’s cognitive ability. The degree to which hearing can be reliably measured in adults with mild dementia has not been determined. Objective To obtain quantitative measures of reliability to evaluate the degree to which audiologic testing can be accurately conducted in older adults with mild dementia. Design, Setting, and Participants This repeated-measures cross-sectional study consisted of a comprehensive audiologic assessment on 2 occasions separated by 1 to 2 weeks performed in the department of otolaryngology at the Washington University School of Medicine from December 3, 2018, to March 4, 2020. Participants were 15 older adults with a verified diagnosis of mild dementia and 32 older adults without a verified diagnosis of mild dementia who were recruited from the Knight Alzheimer Disease Research Center at Washington University in St Louis. Main Outcomes and Measures Test-retest reliability was assessed for tympanometry, acoustic reflex thresholds, otoacoustic emissions, hearing sensitivity, speech reception threshold, speech perception in noise, and hearing handicap, using standard clinical audiology measures. Results A total of 47 older adults (26 women; mean [SD] age, 74.8 [6.0] years [range, 53-87 years]), including 32 with normal cognitive function and 15 with very mild or mild dementia, completed the study protocol. For participants with mild dementia, high test-retest reliability (Spearman ρ > 0.80) was found for most measures typically included in a comprehensive audiometric evaluation. For acoustic reflex thresholds, agreement was moderate to high, averaging approximately 83% across frequencies for both groups. Scores for the screening Hearing Handicap Inventory for the Elderly at time 1 and time 2 were highly correlated for the group with normal cognitive function (r = 0.84 [95% CI, 0.70-0.93]) and for the group with mild dementia (r = 0.96 [95% CI, 0.88-0.99]). For hearing thresholds, all rank-order correlations were above 0.80 with 95% CIs at or below 15% in width, with the exception of a moderate correlation of bone conduction thresholds at 500 Hz for the group with normal cognitive function (r = 0.69 [95% CI, 0.50-0.84]) and slightly wider 95% CIs for low-frequency bone conduction thresholds for both groups. For speech reception thresholds, correlations were high for groups with normal cognitive function (r = 0.91 [95% CI, 0.84-0.95]) and mild dementia (r = 0.83 [95% CI, 0.63-0.94]). Conclusions and Relevance Test-retest reliability for hearing measures obtained from participants with mild dementia was comparable to that obtained from cognitively normal participants. These findings suggest that mild cognitive impairment does not preclude accurate audiologic assessment., This cross-sectional study obtains quantitative measures of reliability to evaluate the degree to which audiologic testing can be accurately conducted for older adults with mild dementia.
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- 2021
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23. Exploring the Acoustic Perceptual Relationship of Speech in Parkinson's Disease.
- Author
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Yi-Fang Chiu, Neel, Amy, and Loux, Travis
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PARKINSON'S disease , *SPEECH disorders , *RELATIVE medical risk , *DYSARTHRIA , *AUDITORY perception , *PSYCHOLOGICAL tests , *INTER-observer reliability , *SOUND - Abstract
Purpose: Auditory perceptual judgments are commonly used to diagnose dysarthria and assess treatment progress. The purpose of the study was to examine the acoustic underpinnings of perceptual speech abnormalities in individuals with Parkinson's disease (PD). Method: Auditory perceptual judgments were obtained from sentences produced by 13 speakers with PD and five healthy older adults. Twenty young listeners rated overall ease of understanding, articulatory precision, voice quality, and prosodic adequacy on a visual analog scale. Acoustic measures associated with the speech subsystems of articulation, phonation, and prosody were obtained, including second formant transitions, articulation rate, cepstral and spectral measures of voice, and pitch variations. Regression analyses were performed to assess the relationships between perceptual judgments and acoustic variables. Results: Perceptual impressions of Parkinsonian speech were related to combinations of several acoustic variables. Approximately 36%-49% of the variance in the perceptual ratings were explained by the acoustic measures indicating a modest acoustic perceptual relationship. Conclusions: The relationships between perceptual ratings and acoustic signals in Parkinsonian speech are multifactorial and involve a variety of acoustic features simultaneously. The modest acoustic perceptual relationships, however, suggest that future work is needed to further examine the acoustic bases of perceptual judgments in dysarthria. [ABSTRACT FROM AUTHOR]
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- 2021
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24. Separate Clock Network Voltage for Correcting Random Errors in ULV Clocked Storage Cells
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Kuo-Chiang Chang, Yuan-Hua Chu, Liang-Chia Cheng, Shien-Chun Luo, Ming-Pin Chen, Po-Hsun Chen, Ching-Ji Huang, Chih-Wei Liu, and Yi-Fang Chiu
- Subjects
Process variation ,Standard cell ,Microcontroller ,Computer science ,law ,Electronic engineering ,Overhead (computing) ,Energy consumption ,Electrical and Electronic Engineering ,Flip-flop ,law.invention ,Voltage ,Clock network - Abstract
This brief presents an implementation of ultralow-power microcontrollers that use a separate clock network voltage (SCNV) to correct unexpected errors produced by on-chip variations (OCVs). Separating the clock network voltage requires amendments in the standard cell library and physical designs. Here, the experiments used a 65-nm technology that exhibited considerable OCVs, which caused write and retention errors in clocked storage cells and limited the voltage scaling of microcontrollers. Using the SCNV provides an extraordinary operability to correct errors in the low-voltage clocked storage cells. In addition, the area overhead of the proposed implementation is negligible. Applying the SCNV, the measurement results indicate that the microcontrollers can be operated below 0.3 V, over 0.15-V extension in voltage scaling, and achieve the optimal energy consumption at 0.34 V. Separating the clock network voltage has tradeoff issues in system timing and energy consumption based on the measurement results, and this brief discusses proper applications.
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- 2014
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25. Association Between the Hemodialysis Eating Index and Risk Factors of Cardiovascular Disease in Hemodialysis Patients
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Tso Hsiao Chen, Pei Yu Wu, Yi Chun Chen, Hsi Hsien Chen, Hsin Hung Chen, Yi Fang Chiu, Shwu-Huey Yang, and Chun Kuang Shih
- Subjects
medicine.medical_specialty ,White meat ,medicine.medical_treatment ,Taiwan ,Serum albumin ,Nutritional Status ,Medicine (miscellaneous) ,Disease ,Body Mass Index ,Nutrition Policy ,Eating ,Hemoglobins ,Renal Dialysis ,Risk Factors ,Internal medicine ,Humans ,Nuts ,Medicine ,Prospective cohort study ,Serum Albumin ,Aged ,Nutrition and Dietetics ,biology ,business.industry ,Nutritional status ,Middle Aged ,Diet ,Cholesterol ,Cardiovascular Diseases ,Nephrology ,Fruit ,Hypertension ,biology.protein ,Physical therapy ,Phosphorus, Dietary ,Dietary Proteins ,Hemodialysis ,Edible Grain ,Energy Intake ,business ,Multivitamin ,Body mass index - Abstract
Objective In this study, a Hemodialysis Eating Index (HDEI) suitable for hemodialysis (HD) patients in Taiwan was developed based on the dietary recommendations of the U.S. National Kidney Foundation for HD patients and the Taiwanese 2011 Daily Food Guide. The HDEI was used to explore HD-associated cardiovascular disease (CVD) risk factors. Methods In this prospective study, 108 HD patients from 2 HD centers in Taiwan were recruited as participants in 2010. All participants were older than 20 years. Patient CVD risk factor and 3-day dietary data were collected, and their HDEI scores were calculated. The HDEI scores comprise 12 food-related factors: the consumption of vegetables, fruits, total grains, whole grains, high-protein foods, high biological values, red and white meat, fish, oils, saturated fatty acids or trans fatty acids, nuts, and the duration of multivitamin use. The scores ranged from 5 to 100, and SAS software version 9.3 was used to perform statistical analyses. A P value less than .05 was considered statistically significant. Results The HDEI scores and serum albumin (Alb) levels were significantly and positively correlated. The participants were divided into 2 groups on the basis of the median HDEI score of 72.2. Two months after HDEI evaluation, the high-HDEI scoring group exhibited significantly decreased levels of serum total cholesterol and increased hemoglobin (Hb) levels. Conclusion The HDEI can be used to reflect selected nutritional status markers, such as Alb and Hb levels and CVD risk factors, for HD patients. The HDEI can also serve as an eating index for HD patients in Taiwan to facilitate CVD prevention.
- Published
- 2014
- Full Text
- View/download PDF
26. Mutations of Cytochrome b559 and PsbJ on and near the QC Site in Photosystem II Influence the Regulation of Short-Term Light Response and Photosynthetic Growth of the Cyanobacterium Synechocystis sp. PCC 6803
- Author
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Tien-Sheng Tseng, Hsing-Ting Wang, Mercedes Roncel, Yi-Fang Chiu, Hsiu-An Chu, José M. Ortega, Shyue-Chu Ke, Jine-Yung Huang, and Universidad de Sevilla. Departamento de Bioquímica Vegetal y Biología Molecular
- Subjects
0106 biological sciences ,0301 basic medicine ,Models, Molecular ,Photoinhibition ,Photosystem II ,Light ,Mutant ,Cytochrome b559 ,macromolecular substances ,Biology ,Photosynthesis ,Photochemistry ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,Bacterial Proteins ,Quenching (fluorescence) ,Binding Sites ,Organisms, Genetically Modified ,Synechocystis ,Photosystem II Protein Complex ,biology.organism_classification ,Cytochrome b Group ,Fluorescence ,030104 developmental biology ,Mutation ,Biophysics ,010606 plant biology & botany - Abstract
he characteristic features of two types of short-term light adaptations of the photosynthetic apparatus of the cyanobacterium Synechocystis sp. PCC 6803, state transition and blue-green light-induced fluorescence quenching, were compared in wild-type and cytochrome b559 and PsbJ mutant cells with mutations on and near the QC site in photosystem II (PSII). All mutant cells grew photoautotrophically and assembled stable PSII. Thermoluminescence emission experiments showed a decrease in the stability of the S3QB–/S2QB– charge pairs in the A16FJ, S28Aβ, and V32Fβ mutant cells. When dark-adapted wild-type and mutant cells were illuminated by medium-intensity blue light, the increase in the PSII fluorescence yield (indicating a transition to state 1) was more prominent in mutant than wild-type cells. Strong blue-light conditions induced a quenching of fluorescence corresponding to nonphotochemical fluorescence quenching (NPQ). The extension of NPQ decreased significantly in the mutants, and the kinetics appeared to be affected. When similar measures were repeated on an orange carotenoid protein (OCP)-deficient background, little or no quenching was observed, which confirms that the decrease in fluorescence under strong blue light corresponded to the OCP-dependent NPQ. Immunoblot results showed that the attenuated effect of blue light-induced NPQ in mutant cells was not due to a lack of OCP. Photosynthetic growth and biomass production were greater for A16FJ, S28Aβ, and V32Fβ mutant cells than for wild-type cells under normal growth conditions. Our results suggest that mutations of cytochrome b559 and PsbJ on and near the QC site of PSII may modulate the short-term light response in cyanobacteria.
- Published
- 2016
27. The Roles of Cytochrome b559 in Assembly and Photoprotection of Photosystem II Revealed by Site-Directed Mutagenesis Studies
- Author
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Hsiu-An Chu and Yi-Fang Chiu
- Subjects
0106 biological sciences ,0301 basic medicine ,Photosynthetic reaction centre ,Photoinhibition ,Photosystem II ,Mini Review ,Cytochrome b559 ,macromolecular substances ,Plant Science ,Biology ,lcsh:Plant culture ,Photosynthesis ,01 natural sciences ,environment and public health ,03 medical and health sciences ,Botany ,lcsh:SB1-1110 ,cytochrome b559 ,Site-directed mutagenesis ,photosynthesis ,030102 biochemistry & molecular biology ,photoinhibition ,Mutagenesis ,food and beverages ,photosystem II ,enzymes and coenzymes (carbohydrates) ,photoprotection ,Photoprotection ,Biophysics ,cardiovascular system ,site-directed mutagenesis ,010606 plant biology & botany - Abstract
Cytochrome b 559 (Cyt b 559) is one of the essential components of the Photosystem II reaction center (PSII). Despite recent accomplishments in understanding the structure and function of PSII, the exact physiological function of Cyt b 559 remains unclear. Cyt b 559 is not involved in the primary electron transfer pathway in PSII but may participate in secondary electron transfer pathways that protect PSII against photoinhibition. Site-directed mutagenesis studies combined with spectroscopic and functional analysis have been used to characterize Cyt b 559 mutant strains and their mutant PSII complex in higher plants, green algae, and cyanobacteria. These integrated studies have provided important in vivo evidence for possible physiological roles of Cyt b 559 in the assembly and stability of PSII, protecting PSII against photoinhibition, and modulating photosynthetic light harvesting. This mini-review presents an overview of recent important progress in site-directed mutagenesis studies of Cyt b 559 and implications for revealing the physiological functions of Cyt b 559 in PSII.
- Published
- 2016
28. Assessing e-learning 2.0 system success
- Author
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Yi Fang Chiu and Hei Chia Wang
- Subjects
Class (computer programming) ,Service quality ,Knowledge management ,General Computer Science ,Computer science ,business.industry ,Instructional design ,media_common.quotation_subject ,Educational technology ,Information quality ,Computer user satisfaction ,Education ,Loyalty ,Computer-mediated communication ,business ,media_common - Abstract
Traditional e-learning systems support ''one-way'' communication. Teachers provide knowledge for learners, but they are unable to use a student's learning experiences to benefit the class as a whole. To address these problems, this study explores e-learning success factors via the design and evaluation of an e-learning 2.0 system. This study develops a theoretical model to assess user satisfaction and loyalty intentions to an e-learning system using communication quality, information quality, system quality, and service quality. The empirical results show that communication quality, information quality, and service quality significantly and positively affect user satisfaction and loyalty intentions to use the e-learning system for sharing experience, communicating with others, and getting feedback.
- Published
- 2011
- Full Text
- View/download PDF
29. Spectroscopic and Functional Characterizations of Cyanobacterium Synechocystis PCC 6803 Mutants on and near the Heme Axial Ligand of Cytochrome b559 in Photosystem II
- Author
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Shyue-Chu Ke, Hong Jin Hwang, Robert L. Burnap, Hsiu-An Chu, Chung-Hsien Hung, Yung-Han Chen, and Yi-Fang Chiu
- Subjects
Chlorophyll ,Photoinhibition ,Photosystem II ,Cytochrome ,Mutant ,Mutation, Missense ,Cytochrome b559 ,Heme ,macromolecular substances ,Bioenergetics ,environment and public health ,Biochemistry ,chemistry.chemical_compound ,Bacterial Proteins ,Catalytic Domain ,Photosynthesis ,Molecular Biology ,biology ,Chlorophyll A ,Synechocystis ,Wild type ,Photosystem II Protein Complex ,Cell Biology ,Cytochrome b Group ,biology.organism_classification ,enzymes and coenzymes (carbohydrates) ,Spectrometry, Fluorescence ,Amino Acid Substitution ,chemistry ,embryonic structures ,cardiovascular system ,biology.protein ,Biophysics ,Hydrophobic and Hydrophilic Interactions - Abstract
The functional role of cytochrome (cyt) b(559) in photosystem II (PSII) was investigated in H22K alpha and Y18S alpha cyt b(559) mutants of the cyanobacterium Synechocystis sp. PCC6803. H22K alpha and Y18S alpha cyt b(559) mutant carries one amino acid substitution on and near one of heme axial ligands of cyt b(559) in PSII, respectively. Both mutants grew photoautotrophically, assembled stable PSII, and exhibited the normal period-four oscillation in oxygen yield. However, both mutants showed several distinct chlorophyll a fluorescence properties and were more susceptible to photoinhibition than wild type. EPR results indicated the displacement of one of the two axial ligands to the heme of cyt b(559) in H22K alpha mutant reaction centers, at least in isolated reaction centers. The maximum absorption of cyt b(559) in Y18S alpha mutant PSII core complexes was shifted to 561 nm. Y18S alpha and H22K alpha mutant PSII core complexes contained predominately the low potential form of cyt b(559). The findings lend support to the concept that the redox properties of cyt b(559) are strongly influenced by the hydrophobicity and ligation environment of the heme. When the cyt b(559) mutations placed in a D1-D170A genetic background that prevents assembly of the manganese cluster, accumulation of PSII is almost completely abolished. Overall, our data support a functional role of cyt b(559) in protection of PSII under photoinhibition conditions in vivo.
- Published
- 2010
- Full Text
- View/download PDF
30. An Efficient Approach with Scaling Capability to Improve Existing Memory Power Model
- Author
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Yi-Fang Chiu, Wen-Tsan Hsieh, Chien-Nan Jimmy Liu, and Chi-Chia Yu
- Subjects
SIMPLE (military communications protocol) ,business.industry ,Computer science ,Applied Mathematics ,Work (physics) ,Real-time computing ,Modular design ,computer.software_genre ,Computer Graphics and Computer-Aided Design ,Power (physics) ,Computer engineering ,Signal Processing ,Computing with Memory ,Electronic design automation ,Compiler ,Electrical and Electronic Engineering ,business ,Scaling ,computer - Abstract
Embedded memories have been used extensively in modern SoC designs. In order to estimate the power consumption of an entire design correctly, an accurate memory power models are needed. However, the memory power model that is commonly used in commercial EDA tools is too simple to estimate the power consumption accurately. In this work, we develop two methods to improve the accuracy of memory power estimation. Our enhanced memory power model can consider not only the operation mode of memory access, but also the address switching effects with scaling capability. The proposed approach is very useful to be combined with the memory compiler to generate accurate power model for any specified memory size without extra characterization costs. Then the proposed dummy modular approach can link our enhanced memory power model into the existing power estimation flow smoothly. The experimental results have shown that the average error of our memory power model is only less than 5%.
- Published
- 2007
- Full Text
- View/download PDF
31. The Interaction of Lexical Characteristics and Speech Production in Parkinson's Disease
- Author
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Karen Forrest and Yi-Fang Chiu
- Subjects
Adult ,Male ,Linguistics and Language ,Speech production ,Aging ,Parkinson's disease ,Speech output ,Motor Activity ,050105 experimental psychology ,Language and Linguistics ,03 medical and health sciences ,Speech and Hearing ,0302 clinical medicine ,Speech Production Measurement ,medicine ,Humans ,Speech ,0501 psychology and cognitive sciences ,Aged ,Motor theory of speech perception ,05 social sciences ,Linguistics ,Parkinson Disease ,Middle Aged ,medicine.disease ,Manner of articulation ,Word lists by frequency ,Linear Models ,Female ,Affect (linguistics) ,Psychology ,030217 neurology & neurosurgery ,Cognitive psychology - Abstract
PurposeThis study sought to investigate the interaction of speech movement execution with higher order lexical parameters. The authors examined how lexical characteristics affect speech output in individuals with Parkinson's disease (PD) and healthy control (HC) speakers.MethodTwenty speakers with PD and 12 healthy speakers read sentences with target words that varied in word frequency and neighborhood density. The formant transitions (F2 slopes) of the diphthongs in the target words were compared across lexical categories between PD and HC groups.ResultsBoth groups of speakers produced steeper F2 slopes for the diphthongs in less frequent words and words from sparse neighborhoods. The magnitude of the increase in F2 slopes was significantly less in the PD than HC group. The lexical effect on the F2 slope differed among the diphthongs and between the 2 groups.ConclusionsPD and healthy speakers varied their acoustic output on the basis of word frequency and neighborhood density. F2 slope variations can be traced to higher level lexical differences. This lexical effect on articulation, however, appears to be constrained by PD.
- Published
- 2015
32. Relationship Between F2 Slope and Intelligibility in Parkinson's Disease: Lexical Effects and Listening Environment.
- Author
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Yi-Fang Chiu, Forrest, Karen, and Loux, Travis
- Subjects
- *
AUDIOMETRY , *ECOLOGY , *NOISE , *PARKINSON'S disease , *SPEECH evaluation , *INTELLIGIBILITY of speech , *MULTIPLE regression analysis , *DESCRIPTIVE statistics , *DISEASE complications ,PHYSIOLOGICAL aspects of speech - Abstract
Purpose: There is a complex relationship between speech production and intelligibility of speech. The current study sought to evaluate the interaction of the factors of lexical characteristics, listening environment, and the 2nd formant transition (F2 slope) on intelligibility of speakers with Parkinson's disease (PD). Method: Twelve speakers with PD and 12 healthy controls read sentences that included words with the diphthongs /aI/, /cI/, and /aU/. The F2 slope of the diphthong transition was measured and averaged across the 3 diphthongs for each speaker. Young adult listeners transcribed the sentences to assess intelligibility of words with high and low word frequency and high and low neighborhood density in quiet and noisy listening conditions. The average F2 slope and intelligibility scores were entered into regression models to examine their relationship. Results: F2 slope was positively related to intelligibility in speakers with PD in both listening conditions with a stronger relationship in noise than in quiet. There was no significant relationship between F2 slope and intelligibility of healthy speakers. In the quiet condition, F2 slope was only correlated with intelligibility in less-frequent words produced by the PD group. In the noise condition, F2 slope was related to intelligibility in high- and low-frequency words and high-density words in PD. Conclusions: The relationship between F2 slope and intelligibility in PD was affected by lexical factors and listening conditions. F2 slope was more strongly related to intelligibility in noise than in quiet for speakers with PD. This relationship was absent in highly frequent words presented in quiet and those with fewer lexical neighbors. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
33. The Impact of Lexical Characteristics and Noise on Intelligibility of Parkinsonian Speech.
- Author
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Yi-Fang Chiu and Forrest, Karen
- Subjects
- *
PARKINSON'S disease , *INTELLIGIBILITY of speech , *TONE (Phonetics) , *CITY noise , *NEIGHBORHOODS - Abstract
Purpose: This study investigated the impact of lexical characteristics on the intelligibility of speakers with Parkinson's disease (PD). Intelligibility was compared for listening in a quiet versus a noisy environment. Method: A total of 192 young listeners participated in the study, with 96 listeners listening in quiet and 96 listening in noise in which the spoken sentences were mixed with 10-talker babble. The listeners transcribed spoken sentences with target words controlled for word frequency and neighborhood density. The sentences were produced by 12 speakers with PD and 12 healthy control (HC) speakers. Transcription accuracy was compared across lexical categories between PD and HC and between the two listening conditions. Results: Transcription accuracy was higher for high-frequency words than low-frequency words for both speaker groups in quiet and in noise. The neighborhood density effect was evident only in the noise condition with better intelligibility for words from sparse neighborhoods than from dense neighborhoods. Regardless of listening condition, the PD group was less intelligible with a significant decrease in intelligibility in noise relative to quiet. Conclusions: The lexical properties of the words affected listeners' understanding of Parkinsonian speech. Frequent words in sparse neighborhood enhanced intelligibility, especially under adverse listening conditions. Babble noise had a detrimental impact on the intelligibility of Parkinsonian speech. The extent of the lexical effect on intelligibility increased in noise. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
34. Spectroscopic and functional characterization of cyanobacterium Synechocystis PCC 6803 mutants on the cytoplasmic-side of cytochrome b559 in photosystem II
- Author
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Shyue-Chu Ke, Yi-Fang Chiu, Mercedes Roncel, Hsiu-An Chu, Yung-Han Chen, José M. Ortega, Robert L. Burnap, Preston L. Dilbeck, and Jine-Yung Huang
- Subjects
Chlorophyll ,Photoinhibition ,Cytochrome ,Photosystem II ,Thermoluminescence ,Light ,Mutant ,Biophysics ,Cytochrome b559 ,Biochemistry ,Fluorescence ,chemistry.chemical_compound ,Cytosol ,Chlorophyll a fluorescence ,Heme ,biology ,Chemistry ,Chlorophyll A ,Synechocystis ,Wild type ,Electron Spin Resonance Spectroscopy ,Photosystem II Protein Complex ,Cell Biology ,biology.organism_classification ,Cytochrome b Group ,Oxygen ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Mutation ,biology.protein ,Electron paramagnetic resonance ,Chromatography, Liquid - Abstract
We performed spectroscopic and functional characterization on cyanobacterium Synechocystis PCC6803 with mutations of charged residues of the cytoplasmic side of cytochrome (Cyt) b 559 in photosystem II (PSII). All of the mutant cells grew photoautotrophically and assembled stable PSII. However, R7Eα, R17Eα and R17Lβ mutant cells grew significantly slower and were more susceptible to photoinhibition than wild-type cells. The adverse effects of the arginine mutations on the activity and the stability of PSII were in the following order (R17Lβ > R7Eα > R17Eα and R17Aα). All these arginine mutants exhibited normal period-four oscillation in oxygen yield. Thermoluminescence characteristics indicated a slight decrease in the stability of the S 3 Q B − /S 2 Q B − charge pairs in the R7Eα and R17Lβ mutant cells. R7Eα and R17Lβ PSII core complexes contained predominantly the low potential form of Cyt b 559 . EPR results indicated the displacement of one of the two axial ligands to the heme of Cyt b 559 in R7Eα and R17Lβ mutant reaction centers. Our results demonstrate that the electrostatic interactions between these arginine residues and the heme propionates of Cyt b 559 are important to the structure and redox properties of Cyt b 559 . In addition, the blue light-induced nonphotochemical quenching was significantly attenuated and its recovery was accelerated in the R7Lα and R17Lβ mutant cells. Furthermore, ultra performance liquid chromatography–mass spectrometry results showed that the PQ pool was more reduced in the R7Eα and R17Lβ mutant cells than wild-type cells in the dark. Our data support a functional role of Cyt b 559 in protection of PSII under photoinhibition conditions in vivo.
- Published
- 2012
35. A Scalable Power Modeling Approach for Embedded Memory Using LIB Format
- Author
-
Yi-Fang Chiu, Chien-Nan Jimmy Liu, Chi-Chia Yu, and Wen-Tsan Hsieh
- Subjects
Memory management ,Flat memory model ,Physical address ,Computer engineering ,business.industry ,Computer science ,Embedded system ,Interleaved memory ,Uniform memory access ,Registered memory ,Memory refresh ,business ,Extended memory - Abstract
In this work, we develop two methods to improve the accuracy of memory power estimation. Our enhanced memory power model can consider not only the operation mode of memory access, but also the address switching effect and the scaling factors that use the information of physical architecture. The proposed approach is very useful to be combined with memory compiler to generate accurate power model for any specified memory size without extra characterization costs. Then the proposed dummy modular approach can link our enhanced memory power model into commercial power estimation flow smoothly. The experimental results have shown that the average error of our memory power model is only less than 5%.
- Published
- 2006
- Full Text
- View/download PDF
36. An efficient power modeling approach for embedded memory using LIB format
- Author
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Yao-Feng Wang, Chien-Nan Jimmy Liu, Yi-Fang Chiu, and Wen-Tsan Hsieh
- Subjects
Engineering ,Hardware_MEMORYSTRUCTURES ,Flat memory model ,business.industry ,Work (physics) ,Memory architecture ,Electronic engineering ,System on a chip ,Electronic design automation ,Computing with Memory ,Modular design ,business ,Power (physics) - Abstract
Embedded memories have been used extensively in modern SoC designs. In order to estimate the power consumption of entire design correctly, the more accurate memory power model is needed. However, the memory power model which is commonly used in commercial EDA tools is too simple to estimate the power consumption accurately. In this work, we propose two methods to improve the accuracy of memory power estimation. Our enhanced memory power model can consider the switching activity for both control and non-control signals thus can raise the accuracy of traditional memory power models. The proposed dummy modular approach links our enhanced memory power model to commercial power estimation flows. The experimental results have shown that our memory power model is more accurate than the traditional memory power model.
- Published
- 2005
- Full Text
- View/download PDF
37. The Interaction of Lexical Characteristics and Speech Production in Parkinson's Disease.
- Author
-
Yi-Fang Chiu and Forrest, Karen
- Subjects
- *
LEXICAL phonology , *PARKINSON'S disease patients , *FORMANTS (Speech) , *DIPHTHONGS , *SPEECH disorders , *SENTENCES (Grammar) , *PHONETICS , *COGNITIVE ability , *ANALYSIS of variance , *AUDIOMETRY , *COMPARATIVE studies , *PARKINSON'S disease , *PROBABILITY theory , *QUESTIONNAIRES , *SPEECH evaluation , *SPEECH perception , *INTELLIGIBILITY of speech , *REPEATED measures design , *SEVERITY of illness index , *MEDICAL coding , *STATISTICAL models , *DESCRIPTIVE statistics ,PHYSIOLOGICAL aspects of speech - Abstract
Purpose: This study sought to investigate the interaction of speech movement execution with higher order lexical parameters. The authors examined how lexical characteristics affect speech output in individuals with Parkinson's disease (PD) and healthy control (HC) speakers. Method: Twenty speakers with PD and 12 healthy speakers read sentences with target words that varied in word frequency and neighborhood density. The formant transitions (F2 slopes) of the diphthongs in the target words were compared across lexical categories between PD and HC groups. Results: Both groups of speakers produced steeper F2 slopes for the diphthongs in less frequent words and words from sparse neighborhoods. The magnitude of the increase in F2 slopes was significantly less in the PD than HC group. The lexical effect on the F2 slope differed among the diphthongs and between the 2 groups. Conclusions: PD and healthy speakers varied their acoustic output on the basis of word frequency and neighborhood density. F2 slope variations can be traced to higher level lexical differences. This lexical effect on articulation, however, appears to be constrained by PD. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
38. A high throughput 2-dimensional DCT/IDCT architecture for real-time image and video system
- Author
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Jen-Shiun Chiang, Teng-Hung Chang, and Yi-Fang Chiu
- Subjects
Very-large-scale integration ,Adder ,business.industry ,Computer science ,Clock rate ,Lookup table ,Discrete cosine transform ,Signal compression ,Chip ,business ,Computer hardware ,Data compression - Abstract
The discrete cosine transform (DCT) has been widely used as the core of digital image and video signal compression. In this paper, we present a high throughput 8/spl times/8 2D DCT/IDCT architecture which is well suited for the application in real time image or video system. Instead of the transport RAM in the traditional architecture, an overlapped row-column operation is used that can reduce the total latency of the pipelined structure. The multiplication is accomplished by using look-up tables and a partial sum adder to reduce the area and cycle time. It possesses no matrix transposition and is suitable for VLSI implementation. We have designed a DCT/IDCT chip using this architecture via the Compass standard cell library under the TSMC 0.35 /spl mu/m 1P4M process. The chip occupies 4278.4 /spl mu/m/spl times/4278.4 /spl mu/m and consists of 119,181 transistors. The simulation results show that a clock rate of up to 100 MHz can be achieved.
- Published
- 2002
- Full Text
- View/download PDF
39. Mutations of Cytochrome b559 and PsbJ on and near the QC Site in Photosystem II Influence the Regulation of Short-Term Light Response and Photosynthetic Growth of the Cyanobacterium Synechocystis sp. PCC 6803.
- Author
-
Jine-Yung Huang, Yi-Fang Chiu, Ortega, José M., Hsing-Ting Wang, Tien-Sheng Tseng, Shyue-Chu Ke, Roncel, Mercedes, and Hsiu-An Chu
- Subjects
- *
GENETIC mutation , *CYTOCHROME b , *PHOTOSYSTEMS , *SYNECHOCYSTIS , *EFFECT of light on bacteria , *FLUORESCENCE quenching - Abstract
The characteristic features of two types of short-term light adaptations of the photosynthetic apparatus of the cyanobacterium Synechocystis sp. PCC 6803, state transition and blue-green light-induced fluorescence quenching, were compared in wild-type and cytochrome b559 and PsbJ mutant cells with mutations on and near the QC site in photosystem II (PSII). All mutant cells grew photoautotrophically and assembled stable PSII. Thermoluminescence emission experiments showed a decrease in the stability of the S3QB-/S2QB- charge pairs in the A16FJ, S28Aβ, and V32Fβ mutant cells. When dark-adapted wild-type and mutant cells were illuminated by medium-intensity blue light, the increase in the PSII fluorescence yield (indicating a transition to state 1) was more prominent in mutant than wild-type cells. Strong blue-light conditions induced a quenching of fluorescence corresponding to nonphotochemical fluorescence quenching (NPQ). The extension of NPQ decreased significantly in the mutants, and the kinetics appeared to be affected. When similar measures were repeated on an orange carotenoid protein (OCP)-deficient background, little or no quenching was observed, which confirms that the decrease in fluorescence under strong blue light corresponded to the OCP-dependent NPQ. Immunoblot results showed that the attenuated effect of blue light-induced NPQ in mutant cells was not due to a lack of OCP. Photosynthetic growth and biomass production were greater for A16FJ, S28Aβ, and V32Fβ mutant cells than for wild-type cells under normal growth conditions. Our results suggest that mutations of cytochrome b559 and PsbJ on and near the QC site of PSII may modulate the short-term light response in cyanobacteria. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
40. The Roles of Cytochrome b559 in Assembly and Photoprotection of Photosystem II Revealed by Site-Directed Mutagenesis Studies.
- Author
-
Hsiu-An Chu and Yi-Fang Chiu
- Subjects
PHOTOSYSTEMS ,CYTOCHROME P-450 ,CHARGE exchange - Abstract
Cytochrome b
559 (Cyt b559 ) is one of the essential components of the Photosystem II reaction center (PSII). Despite recent accomplishments in understanding the structure and function of PSII, the exact physiological function of Cyt b559 remains unclear. Cyt b559 is not involved in the primary electron transfer pathway in PSII but may participate in secondary electron transfer pathways that protect PSII against photoinhibition. Sitedirected mutagenesis studies combined with spectroscopic and functional analysis have been used to characterize Cyt b559 mutant strains and their mutant PSII complex in higher plants, green algae, and cyanobacteria. These integrated studies have provided important in vivo evidence for possible physiological roles of Cyt b559 in the assembly and stability of PSII, protecting PSII against photoinhibition, and modulating photosynthetic light harvesting. This mini-review presents an overview of recent important progress in site-directed mutagenesis studies of Cyt b559 and implications for revealing the physiological functions of Cyt b559 in PSII. [ABSTRACT FROM AUTHOR]- Published
- 2016
- Full Text
- View/download PDF
41. A Scalable Power Modeling Approach for Embedded Memory Using LIB Format.
- Author
-
Vounckx, Johan, Azemard, Nadine, Maurine, Philippe, Wen-Tsan Hsieh, Chi-Chia Yu, Chien-Nan Jimmy Liu, and Yi-Fang Chiu
- Abstract
In this work, we develop two methods to improve the accuracy of memory power estimation. Our enhanced memory power model can consider not only the operation mode of memory access, but also the address switching effect and the scaling factors that use the information of physical architecture. The proposed approach is very useful to be combined with memory compiler to generate accurate power model for any specified memory size without extra characterization costs. Then the proposed dummy modular approach can link our enhanced memory power model into commercial power estimation flow smoothly. The experimental results have shown that the average error of our memory power model is only less than 5%. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
42. An efficient power modeling approach for embedded memory using LIB format.
- Author
-
Wen-Tsan Hsieh, Chien-Nan Jimmy Liu, Yao-Feng Wang, and Yi-Fang Chiu
- Published
- 2005
- Full Text
- View/download PDF
43. Site-directed mutagenesis on the heme axial-ligands of cytochrome b559 in photosystem II by using cyanobacteria Synechocystis PCC 6803
- Author
-
Yi-Fang Chiu, Hsiu-An Chu, Chung-Hsien Hung, and Jing-Yueh Huang
- Subjects
Chlorophyll ,Photoinhibition ,Photosystem II ,Cytochrome ,Mutant ,Biophysics ,Cytochrome b559 ,Heme ,macromolecular substances ,Cyanobacteria ,Ligands ,Biochemistry ,environment and public health ,Chlorophyll a fluorescence ,Site-directed mutagenesis ,biology ,Chlorophyll A ,Synechocystis ,Photosystem II Protein Complex ,food and beverages ,Cell Biology ,Cytochrome b Group ,biology.organism_classification ,enzymes and coenzymes (carbohydrates) ,Amino Acid Substitution ,Thylakoid ,Mutagenesis, Site-Directed ,biology.protein ,cardiovascular system ,Phycobilisome - Abstract
Cytochrome (cyt) b559 has been proposed to play an important role in the cyclic electron flow processes that protect photosystem II (PSII) from light-induced damage during photoinhibitory conditions. However, the exact role(s) of cyt b559 in the cyclic electron transfer pathway(s) in PSII remains unclear. To study the exact role(s) of cyt b559, we have constructed a series of site-directed mutants, each carrying a single amino acid substitution of one of the heme axial-ligands, in the cyanobacterium Synechocystis sp. PCC6803. In these mutants, His-22 of the alpha or the beta subunit of cyt b559 was replaced with either Met, Glu, Tyr, Lys, Arg, Cys or Gln. On the basis of oxygen-evolution and chlorophyll a fluorescence measurements, we found that, among all mutants that were constructed, only the H22Kalpha mutant grew photoautotrophically, and accumulated stable PSII reaction centers ( approximately 81% compared to wild-type cells). In addition, we isolated one pseudorevertant of the H22Ybeta mutant that regained the ability to grow photoautotrophically and to assemble stable PSII reaction centers ( approximately 79% compared to wild-type cells). On the basis of 77 K fluorescence emission measurements, we found that energy transfer from the phycobilisomes to PSII reaction centers was uncoupled in those cyt b559 mutants that assembled little or no stable PSII. Furthermore, on the basis of immunoblot analyses, we found that in thylakoid membranes of cyt b559 mutants that assembled little or no PSII, the amounts of the D1, D2, cyt b559alpha and beta polypeptides were very low or undetectable but their CP47 and PsaC polypeptides were accumulated to the wild-type level. We also found that the amounts of cyt b559beta polypeptide were significantly increased (larger than two folds) in thylakoid membranes of cyt b559 H22YbetaPS+ mutant cells. We suspected that the increase in the amounts of cyt b559 H22YbetaPS+ mutant polypeptides in thylakoid membranes might facilitate the assembly of functional PSII in cyt b559 H22YbetaPS+ mutant cells. Moreover, we found that isolated His-tagged PSII particles from H22Kalpha mutant cells gave rise to redox-induced optical absorption difference spectra of cyt b559. Therefore, our results concluded that significant fractions of H22Kalpha mutant PSII particles retained the heme of cyt b559. Finally, this work is the first report of cyt b559 mutants having substitutions of an axial heme-ligands that retain the ability to grow photoautotrophically and to assemble stable PSII reaction centers. These two cyt b559 mutants (H22Kalpha and H22YbetaPS+) and their PSII reaction centers will be very suitable for further biophysical and biochemical studies of the functional role(s) of cyt b559 in PSII.
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44. Identification and characterization of a cytochrome b559 Synechocystis 6803 mutant spontaneously generated from DCMU-inhibited photoheterotrophical growth conditions
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Hsiu-An Chu, Yung-Han Chen, Chung-Hsien Hung, Shyue-Chu Ke, Wen-Ching Lin, Chia-Ming Wu, and Yi-Fang Chiu
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Photosynthetic reaction centre ,Chlorophyll ,Photoinhibition ,Time Factors ,Cytochrome ,Ultraviolet Rays ,Mutant ,Biophysics ,Cytochrome b559 ,Electrons ,Heme ,Biochemistry ,Absorption ,Photosystem II ,chemistry.chemical_compound ,Chlorophyll a fluorescence ,Site-directed mutagenesis ,biology ,Chlorophyll A ,Synechocystis ,Wild type ,Electron Spin Resonance Spectroscopy ,Temperature ,Photosystem II Protein Complex ,DCMU ,Heterotrophic Processes ,Cell Biology ,biology.organism_classification ,Cytochrome b Group ,Oxygen ,Kinetics ,Spectrometry, Fluorescence ,chemistry ,Diuron ,Mutation ,biology.protein ,EPR ,Oxidation-Reduction - Abstract
We identified a spontaneously generated mutant from Synechocystis sp. PCC6803 wild-type cells grown in BG-11 agar plates containing 5 mM Glu and 10 μM DCMU. This mutant carries an R7L mutation on the α-subunit of cyt b559 in photosystem II (PSII). In the recent 2.9 A PSII crystal structural model, the side chain of this arginine residue is in close contact with the heme propionates of cyt b559 . We called this mutant WR7Lα cyt b559 . This mutant grew at about the same rate as wild-type cells under photoautotrophical conditions but grew faster than wild-type cells under photoheterotrophical conditions. In addition, 77 K fluorescence and 295 K chlorophyll a fluorescence spectral results indicated that the energy delivery from phycobilisomes to PSII reaction centers was partially inhibited or uncoupled in this mutant. Moreover, WR7Lα cyt b559 mutant cells were more susceptible to photoinhibition than wild-type cells under high light conditions. Furthermore, our EPR results indicated that in a significant fraction of mutant reaction centers, the R7Lα cyt b559 mutation induced the displacement of one of the axial histidine ligands to the heme of cyt b559 . On the basis of these results, we propose that the Arg7Leu mutation on the α-subunit of cyt b559 alters the interaction between the APC core complex and PSII reaction centers, which reduces energy delivery from the antenna to the reaction center and thus protects mutant cells from DCMU-induced photo-oxidative stress.
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45. Spectroscopic and Functional Characterizations of Cyanobacterium Synechocystis PCC 6803 Mutants on and near the Heme Axial Ligand of Cytochrome b559 in Photosystem II.
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Chung-Hsien Hung, Hong Jin Hwang, Yung-Han Chen, Yi-Fang Chiu, Shyue-Chu Ke, Burnap, Robert L., and Hsiu-An Chu
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CYTOCHROME b , *AMINO acids , *CYTOCHROMES , *AMINO compounds , *LIGANDS (Biochemistry) - Abstract
The functional role of cytochrome (cyt) b559 in photosiystem II (PSII) was investigated in H22Kα and Y18Sα cyt b559 mutants of the cyanobacterium Synechocystis sp. PCC6803. H22Kα and Y18Sα cyt b559 mutant carries one amino acid substitution on and near one of heme axial ligands of cyt b559 in PSII, respectively. Both mutants grew photoautotrophically, assembled stable PSII, and exhibited the normal period-four oscillation in oxygen yield. However, both mutants showed several distinct chlorophyll a fluorescence properties and were more susceptible to photoinhibition than wild type. EPR results indicated the displacement of one of the two axial ligands to the heme of cyt b559 in H22Kα mutant reaction centers, at least in isolated reaction centers. The maximum absorption of cyt b559 in Y18Sα mutant PSII core complexes was shifted to 561 nm. Y18Sα and H22Kα mutant PSII core complexes contained predominately the loss potential form of cyt b559. The findings lend support to the concept that the redox properties of cyt b559 are strongly influenced by the hydrophobicity and ligation environment of the heme. When the cyt b559 mutations placed in a D1-D170A genetic background that prevents assembly of the manganese cluster, accumulation of PSII is almost completely abolished. Overall, our data support a functional role of cyt b559 in protection of PSII under photoinhibition conditions in vivo. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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