1. Fine mapping of a major QTL on chromosome A05 conferring pod size in peanut
- Author
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Kunkun Zhao, Xufa Du, Jingjing Zhang, Yi Fan, Qian Ma, Yaoyao Li, Zenghui Cao, Di Cao, Sasa Hu, Ding Qiu, Kai Zhao, Fangping Gong, Zhongfeng Li, Rui Ren, Lin Zhang, Xingli Ma, Xingguo Zhang, and Dongmei Yin
- Subjects
Peanut ,Pod size ,BSA-seq ,Zinc finger protein ,Agriculture ,Agriculture (General) ,S1-972 - Abstract
Pod size is a key agronomic trait that influences peanut yield greatly. However, our understanding of the mechanisms underlying pod size is limited. In this study, we employed a segregating population derived from a cross between the small-pod line ND_S and the large-pod line ND_L to map quantitative trait loci (QTL) associated with pod size. Initial mapping performed using bulk segregant analysis revealed a candidate interval on chromosome A05 referred to as qPSW05. We refined this interval to a 256.9 kb genomic region using newly developed molecular markers. Through sequence and expression analyses, we identified the candidate gene AhXE45GC, which encodes an AN1 zinc finger protein. We discovered a 33-bp insertion in the intron of AhXE45GC in ND_S. Accessions that lack this insertion, such as ND_L, had significantly larger pods than those with the insertion, including ND_S. To facilitate marker-assisted selection for peanut pod size, we developed a molecular marker associated with this polymorphism. This marker could provide a valuable genetic resource for breeding high-yielding peanut varieties.
- Published
- 2024
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