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INDETERMINATE DOMAIN (IDD) proteins, a family of transcription factors unique to plants, function in multiple developmental processes. Although the IDD gene family has been identified in many plants, little is known about it in moso bamboo. In this present study, we identified 32 PheIDD family genes in moso bamboo and randomly sequenced the full-length open reading frames (ORFs) of ten PheIDDs. All PheIDDs shared a highly conserved IDD domain that contained two canonical C2H2-ZFs, two C2HC-ZFs, and a nuclear localization signal. Collinearity analysis showed that segmental duplication events played an important role in expansion of the PheIDD gene family. Synteny analysis indicated that 30 PheIDD genes were orthologous to those of rice (Oryza sativa). Thirty PheIDDs were expressed at low levels, and most PheIDDs exhibited characteristic organ-specific expression patterns. Despite their diverse expression patterns in response to exogenous plant hormones, 8 and 22 PheIDDs responded rapidly to IAA and 6-BA treatments, respectively. The expression levels of 23 PheIDDs were closely related to the outgrowth of aboveground branches and 20 PheIDDs were closely related to the awakening of underground dormant buds. In addition, we found that the PheIDD21 gene generated two products by alternative splicing. Both isoforms interacted with PheDELLA and PheSCL3. Furthermore, both isoforms could bind to the cis-elements of three genes (PH02Gene17121, PH02Gene35441, PH02Gene11386). Taken together, our work provides valuable information for studying the molecular breeding mechanism of lateral organ development in moso bamboo.

Drought stress is an important limiting factor of plant performance, and how it interacts with increasing nitrogen (N) deposition to affect seedling development requires further investigation. This study addresses the combined effects of N deposition and drought on growth and physiological attributes of Phyllostachys edulis (Carr.) seedlings. Seedling growth attributes and nitrogen metabolism indicators were evaluated after the fast-growing period in the presence of four simulated N deposition rates (control, 0 kg·ha−1·yr−1; low N, 30; medium N, 60; high N, 90) and two watering conditions (normal, 75 ± 5% of field capacity; or drought, 35 ± 5%). Drought stress significantly inhibited P. edulis seedling growth and N metabolism. Under normal watering conditions, greater simulated N deposition was associated with higher seedling component mass, free amino acid and soluble protein content in leaves, and enzyme activity related to N metabolism. Under drought conditions, medium N deposition maximized seedling component mass and enzyme activity related to N metabolism. Overall, low and medium N deposition improved seedling performance under drought conditions, but high N deposition did not. Moderate N deposition can partially offset the negative effects of drought stress on P. edulis seedling development.

Camptotheac acuminata Decne is a unique tree species in China with an important secondary metabolite, camptothecin (CPT), used in the treatment of cancer. Nitrogen (N) is an important element that affects plant growth and the accumulation of CPT. Reports on the effect of N on CPT synthesis from a genetic perspective are scarce. To explore the effects of different N sources and levels on CPT synthesis in C. acuminata, two-year-old seedlings were fertilized with different concentrations of pure ammonium sulphate, source of ammonium N (NH4+–N), and potassium nitrate for nitrate N (NO3−–N). Concentrations of 2.5, 5, 7.5, and 10 g pot−1 NH4+–N and NO3−–N were used. The results showed that 7.5 g NH4+–N and NO3−–N treatments were best for growth and fresh weight of leaves. Compared with the other treatments, the CPT content, tryptophan synthase and tryptophan decarboxylase activities, and expression of the CaTSB and CaTDC1 genes under the 2.5 g NH4+–N and NO3−–N treatments peaked significantly at 30 days. However, the expression of CaTDC2 surpassed that of the other two genes at 60 days. Therefore, compared with NH4+–N source, the NO3−–N source was more beneficial for growth, and NO3−–N was better for CPT yield. Consequently, leaves of C. acuminata treated with 2.5 g NO3−–N could be harvested after 30 days to obtain maximum CPT content. CaTDC1 is more closely linked to CPT synthesis. The results of this study improved the production of CPT in C. acuminata via fertilization.

Phosphorus-solubilizing microorganisms (PSMicros) play vital roles in helping plants to resist phosphorus (P) deficiency in soils, while their activities may vary with site conditions. The present study investigated the microbial diversity and subsequently screened PSMicro strains from rhizosphere soils at five bamboo forests in subtropical China, among which four were developed in a same stand. The activities of the screened PSMicros were also assessed. The results showed great variation in microbial diversity among different forests. Concomitantly, a total of 52 PSMicro strains were isolated and identified to 10 bacterial genera and 4 fungal genera, with different forest rhizosphere soils containing different PSMicros and/or showing different abundances for a certain PSMicro genus, despite some PSMicros would not grow readily on plates. Different, and even the same microbial genera isolated across the five forests, varied significantly in the amount of P that they solubilized from the medium, which ranged from 18.5 to 581.33 mg L-1 . Among the isolated PSMicros, species of Bacillus, Kluyvera, Buttiauxella, Meyerozyma and Penicillium were preponderant to liberate P from organic and inorganic P pools. This will have implications for biotechnological exploitation of microbes to alleviate P limitation in agricultural and natural systems with a sustainable green ecological approach.

Maturation-related changes in cell wall composition and the molecular mechanisms underlying cell wall changes were investigated from the apical, middle and basal segments in moso bamboo shoot (MBS). With maturation extent from apical to basal regions in MBS, lignin and cellulose content increased, whereas heteroxylan exhibited a decreasing trend. Activities of phenylalanine amonnialyase (PAL), cinnamyl alcohol dehydrogenase (CAD) and cinnamate-4-hydroxylase (C4H), which are involved in lignin biosynthesis, increased rapidly from the apex to the base sections. The comparative transcriptomic analysis was carried out to identify some key genes involved in secondary cell walls (SCW) formation underlying the cell wall compositions changes including 63, 8, 18, and 31 functional unigenes encoding biosynthesis of lignin, cellulose, xylan and NAC-MYB-based transcription factors, respectively. Genes related to secondary cell wall formation and lignin biosynthesis had higher expression levels in the middle and basal segments compared to those in the apical segments. Furthermore, the expression profile of PePAL gene showed positive relationships with cellulose-related gene PeCESA4, xylan-related genes PeIRX9 and PeIRX10. Our results indicated that lignification occurred in the more mature middle and basal segments in MBS at harvest while lignification of MBS were correlated with higher expression levels of PeCESA4, PeIRX9 and PeIRX10 genes.

The effects of nitrogen (N) deposition and management practices on leaf litterfall and N and P return in Moso bamboo forest are not yet known. In this study, we investigated the effects of four levels of simulated N deposition, including low-N (N30, 30 kg ha−1 year−1), medium-N (N60, 60 kg ha−1 year−1), and high-N (N90, 90 kg ha−1 year−1), and a control with no N (N-free addition). The experiment was performed in a Moso bamboo forest under conventional management (CM) and intensive management (IM). The results showed that leaf litterfall and N and P return occurred mainly from March to June and accounted for 78.2–82.2, 78.5–82.1, and 85.6–94.6% of annual leaf litterfall, N return, and P return, respectively. Unlike CM, IM significantly increased leaf litterfall and N and P return. The positive effects were further amplified by low- and medium-N deposition, but not high-N deposition. The combination of low- and medium-N deposition and IM significantly increased N and P return, but not litterfall. Our results indicated that the interaction of anthropogenic management practices and N deposition need to be considered when estimating the effects of N deposition on the biogeochemical cycle of a forest ecosystem.

Acid invertases (INVs) play a pivotal role in both vegetative and reproductive growth of plants. However, their possible functions in fast-growing plants such as bamboo are largely unknown. Here, we report the molecular characterization of acid INVs in Phyllostachys heterocycla cv. pubescens, a fast-growing bamboo species commercially grown worldwide. Nine acid INVs (PhINVs), including seven cell wall INVs (PhCWINV1, PhCWINV2, PhCWINV3, PhCWINV4, PhCWINV5, PhCWINV6 and PhCWINV7) and two vacuolar INVs (PhVINV11 and PhVINV12) were isolated. Bioinformatic analyses demonstrated that they all share high amino acid identity with other INVs from different plant species and contain the motifs typically conserved in acid INV. Enzyme activity assays revealed a significantly higher INV activity in the fast-growing tissues, such as the elongating internodes of stems. Detailed quantitative reverse-transcription PCR analyses showed various expression patterns of PhINVs at different developmental stages of the elongating stems. With the exception of PhCWINV6, all PhINVs were ubiquitously expressed in a developmental-specific manner. Further studies in Arabidopsis exhibited that constitutive expression of PhCWINV1, PhCWINV4 or PhCWINV7 increased the biomass production of transgenic plants, as indicated by augmented plant heights and shoot dry weights than the wild-type plants. All these results suggest that acid INVs play a crucial role in the internode elongation of P. heterocycla cv. pubescens and would provide valuable information for the dissection of their exact biological functions in the fast growth of bamboo.

Light quality is an important environmental factor for plant growth and development. In this study, the effects of light quality (white, blue, yellow, and red light) on plant growth, photosynthesis, and radical oxygen species production and scavenging were investigated, in Camptotheca acuminata (C. acuminata) seedlings, by means of measuring growth parameters, photosynthetic pigments, gas exchange, and chlorophyll fluorescence, as well as stomatal structure and density, chloroplast ultrastructure, and ROS contents and antioxidant activities. Compared with white light, red light significantly increased seedling height, shoot, and total plant biomass, and promoted the highest photosynthetic capacity, electron transport, and photochemical efficiency. Red light also helped facilitate leaf development, indicated by higher total and specific leaf area, as well as decreased malondialdehyde content and relative electrolyte conductivity and contents of superoxide anion production rate and peroxide. In contrast, blue and yellow light significantly reduced plant growth, and increased activities of superoxidase dismutase, peroxidase, and catalase. Furthermore, red light promoted chloroplast development, which enhanced photosynthetic efficiency. These results suggest that red light could improve plant growth in C. acuminata seedlings through activating photosynthetic processes, reducing ROS accumulation, and maintaining chloroplast structure.

A bamboo shoot is the immature stem of the woody grass and a nutritious and popular vegetable in East Asia. However, it undergoes a rapid xylogenesis process right after harvest, even being stored in a cold chamber. To investigate the molecular regulation mechanisms of xylogenesis in Moso bamboo (Phyllostachys edulis) shoots (MBSes) during cold storage, the measurement of cell wall polymers (cellulose, hemicellulose, and lignin) and related enzyme activities (phenylalanine ammonia lyase (PAL), cinnamyl alcohol dehydrogenase (CAD), peroxidase (POD), and xylan xylosyltransferase (XylT)) and transcriptomic analysis were performed during cold storage. It was noticed that cellulose and lignin contents increased, while hemicellulose content exhibited a downward trend. PAL, CAD, and POD activity presented an upward trend generally in MBS when stored at 4 &deg, C for 16 days. XylT activity showed a descending trend during the stages of storage, but slightly increased during the 8th to 12th days after harvest at 4 &deg, C. Transcriptomic analysis identified 72, 28, 44, and 31 functional unigenes encoding lignin, cellulose, xylan biosynthesis enzymes, and transcription factors (TFs), respectively. Many of these secondary cell wall (SCW)-related genes showed higher expression levels in the later period of cold storage. Quantitative RT-PCR analysis of the selected genes conformed to the expression pattern. Our study provides a comprehensive analysis of MBS secondary wall biosynthesis at the molecular level during the cold storage process. The results give insight into the xylogenesis process of this economically important vegetable and shed light on solving this problem of the post-harvest industry.

The responses of plant growth and secondary metabolites to light quality are useful measurements to determine suitable habitat conditions for the cultivation of medicinal plants. The effect of light quality (white, blue, yellow, and red light) on leaf growth, camptothecin yield, the enzymatic activity, and the expression of camptothecin biosynthesis-related genes were investigated in Camptotheca acuminata seedlings. This was accomplished via measuring total leaf biomass, camptothecin content, activities of TSB and TDC, and the relative expression of TSB, TDC1, and TDC2 genes. Compared with white light, the red light treatment displayed the highest leaf biomass, while yellow light and blue light inhibited the growth of the plants. The lowest leaf biomass was found in plants under the blue light treatment. On day 45, the highest values of CPT content were observed under blue light conditions, followed by yellow light, red light, and white light. Among the four light environments, camptothecin yield was the highest in plants grown under red light. Furthermore, activities of TSB and TDC as well as the relative expression of genes of TSB, TDC1, and TDC2 were significantly increased on day 45 under blue light as compared with the white light. This suggests that blue light up-regulated the expression of camptothecin biosynthesis-related genes and induced camptothecin biosynthesis. The results indicate that red light was effective for inducing the production of camptothecin in C. acuminata seedling leaves. Manipulating light quality can be an effective means to achieve the highest camptothecin yield in medicinal plantation, but this conclusion needs to be further verified by more well-designed large-scale trials.

Bamboo shoots may become lignified after harvest and even deteriorate rapidly under low-temperature storage. Melatonin reportedly delays plant senescence. This study was designed to investigate the effect of melatonin on texture quality index, lignin formation, scavenging-enzyme activity, and transcription-factor expression in Moso bamboo ( Phyllostachys edulis ) shoots stored at 4 °C for 12 d. Application of melatonin effectively retarded shoot lignification, as indicated by a reduction in the rate of hardening and yellowing, as well as reduced lignin and cellulose contents. Furthermore, melatonin treatment inhibited phenylalanine ammonia-lyase and peroxidase activities significantly, while enhancing superoxide dismutase, catalase, and ascorbate peroxidase activities at different storage stages. Additionally, transcription factors of SND2 , KNAT7 , MYB20 and MYB85 from the NAC and MYB families were upregulated during postharvest storage of bamboo shoots, and melatonin treatment significantly inhibited their expression. These results suggest that the delaying effect of postharvest bamboo shoot lignification by melatonin treatment was mainly attributed to decreased activity of lignin biosynthesis-related enzymes and induced activation of antioxidant enzyme activity. Moreover, exogenous melatonin may be involved in the transcriptional regulation of the lignification process of bamboo shoots.

The elite indica rice variety Hua-jing-xian 74 and its 12 single segment substitution lines (SSSLs), all of which have been shown to have quantitative trait loci (QTL) for panicle number (PN), were used as crossing parents to construct a half-diallel crossing population with the aim of analyzing the expression of these QTL under different cropping densities. A total of 91 half-diallel crossing combinations were grown in two planting seasons at three cropping densities. PN was measured at the mature stage. The additive, dominant and epistatic effects of the 12 QTL as well as their interaction effects with the seasons and with the densities were estimated based on genetic effect components. Our analysis revealed that PN generally decreased with increasing cropping density. In the six single environments, eight additive QTL, nine dominant QTL and 49 pairs of epistatic QTL were detected, which were mostly associated with estimated positive, positive and negative effects, respectively. Expression of these QTL differed across planting seasons and cropping densities, implying an existing of QTL-by-environment interaction. Further analysis of the QTL effect components revealed that seven, eight and 28 pairs of QTL were present with significant additive, dominance, epistasis and/or interaction effects with densities. QTL additive and dominant effects were mostly positive, while epistatic effects were all negative. No significant QTL-by-season effects were detected. QTL Pn3-1, without any significant additive-by-density interaction effect, showed stable additive expression across densities. QTL Pn3-1, Pn3-2 and Pn6-1 showed stable dominance expression, and QTL pairs Pn2-1/Pn9, Pn2-2/Pn3-1, Pn2-2/Pn6-2, Pn3-1/Pn6-1, Pn3-1/Pn7 and Pn6-1/Pn6-3 had stable epistasis expression. The remaining significant QTL had different effects across densities. We determined that a density of 10 × 16.7 cm2 had little influence on QTL expression, that a density of 16.7 × 16.7 cm2 mostly increased QTL additive and dominant effects and decreased QTL epistatic effects and that a density of 23.3 × 16.7 cm2 had the opposite impact on QTL effects compared with 16.7 × 16.7 cm2. Additionally, the influence of density on QTL epistatic effect was generally larger than that on QTL additive or dominant effect. These results provide the information on cropping density and how it influences PN QTL expression, which may be useful information to improve rice PN via heterosis and/or QTL pyramiding.

Chronic exposure to arsenic (As) in rice has raised many health and environmental problems. As reported, great variation exists among different rice genotypes in As uptake, translocation, and accumulation. Under hydroponic culture, we find that the Chinese wild rice (Oryza rufipogon; acc. 104624) takes up the most arsenic among tested genotypes. Of the cultivated rice, the indica cv. 93-11 has the lowest arsenic translocation factor value but accumulates the maximum concentration of arsenic followed by Nipponbare, Minghui 86, and Zhonghua 11. Higher level of arsenite concentration (50 μM) can induce extensive photosynthesis and root growth inhibition, and cause severe oxidative stress. Interestingly, external silicate (Si) supplementation has significantly increased the net photosynthetic rate, and promoted root elongation, as well as strongly ameliorated the oxidative stress by increasing the activities of antioxidant enzymes superoxide dismutase, ascorbate peroxidase, and peroxidase in roots and/or leaves of 93-11 seedlings. Notably, 1.873 mM concentration of Si considerably decreases the total As uptake and As content in roots, but significantly increases the As translocation from roots to shoots. In contrast, Si supplementation with 1.0 mM concentration significantly increases the total As uptake and As concentrations in roots and shoots of 93-11 seedlings after 50 μM arsenite treatment for 6 days.

Water stress is one of the main environmental stresses that affect plant growth and development. Salicylic acid (SA) induces water stress tolerance in plants. In this study, the effect of exogenous SA on physiological and biochemical process in Red bayberry (Myric rubra) seedlings, of three different genotypes, that were grown under water stress (soil ranging from 20 to 50 % of field capacity) was evaluated. Results showed that water stress severely affected the relative water content (RWC), photosynthesis, stomatal conductance and enzymes activities. Genotypes differed in RWC, Chlorophyll content, gas exchange parameter, antioxidant enzymes activities and proline, and the genotype Biqi had the RWC, photosynthesis, stomatal conductance and enzymes activities greater than the other two genotypes Wangdao and Shenhong. SA treated plants showed, in general, a higher RWC, chlorophyll content, photosynthetic rate, stomatal conductance, superoxide dismutase activity and proline content, and a lower relative electrolyte conductivity, methane dicarboxylic aldehyde content and catalase activity compared to those of untreated seedlings. These results signified the role of SA in diminishing the negative effects of drought on Red bayberry plants and suggest that SA could be used as a potential growth regulator, for improving plant growth under water stress.

Camptotheca acuminata (C. acuminata) is utilized in preparation of drugs and as constituent in functional foods of China due to high camptothecin (CPT) content in different plant parts. Light intensity is one of the most critical factors which affect plant growth and secondary metabolites. Pot experiment was conducted to study the effect of light intensity (i.e., 100 % irradiance (control), 75 % irradiance, 50 % irradiance and 25 % irradiance) on contents of CPT, activity of enzymes and genes expression related to CPT biosynthesis of C. acuminata seedlings. The study examined total leaf biomass, CPT content, activities of tryptophan synthase (TSB) and tryptophan decarboxylase (TDC), and relative expression of TSB, TDC1, and TDC2 genes. Plants grown in 75 % irradiance possessed the greatest leaf biomass compared with 100 % light irradiance. Highest values of CPT contents were found after 60 days in plants grown in 50 % irradiance, followed by 25, 75 % and full sunlight. Furthermore, activities of TSB, TDC and relative expression of genes of TSB, TDC1, and TDC2, were significantly increased after 60 days of 50 % irradiance compared with full sunlight. Irradiance of 50 % up-regulated the expression of CPT biosynthesis-related genes and induced CPT biosynthesis. In addition to that lower or higher irradiance inhibited the expression of CPT biosynthesis-related genes and CPT biosynthesis. It is concluded that manipulating light intensity can be an effective means to achieve highest CPT yield in medicinal plants.

KEY MESSAGE : We develop a set of universal genetic markers based on single-copy orthologous (COSII) genes in Poaceae. Being evolutionary conserved, single-copy orthologous (COSII) genes are particularly useful in comparative mapping and phylogenetic investigation among species. In this study, we identified 2,684 COSII genes based on five sequenced Poaceae genomes including rice, maize, sorghum, foxtail millet, and brachypodium, and then developed 1,072 COSII markers whose transferability and polymorphism among five bamboo species were further evaluated with 46 pairs of randomly selected primers. 91.3 % of the 46 primers obtained clear amplification in at least one bamboo species, and 65.2 % of them produced polymorphism in more than one species. We also used 42 of them to construct the phylogeny for the five bamboo species, and it might reflect more precise evolutionary relationship than the one based on the vegetative morphology. The results indicated a promising prospect of applying these markers to the investigation of genetic diversity and the classification of Poaceae. To ease and facilitate access of the information of common interest to readers, a web-based database of the COSII markers is provided ( http://www.sicau.edu.cn/web/yms/PCOSWeb/PCOS.html ).

Light intensity critically affects plant growth. Camptotheca acuminata is a light-demanding species, but its optimum light intensity is not known. To investigate the response of C. acuminata seedlings to different light intensities, specifically 100% irradiance (PAR, 1500 ± 30 μmol m(-2) s(-1)), 75% irradiance, 50% irradiance, and 25% irradiance, a pot experiment was conducted to analyze growth parameters, photosynthetic pigments, gas exchange, chlorophyll fluorescence, stomatal structure and density, chloroplast ultrastructure, ROS concentrations, and antioxidant activities. Plants grown under 75% irradiance had significantly higher total biomass, seedling height, ground diameter, photosynthetic capacity, photochemical efficiency, and photochemical quenching than those grown under 100%, 25%, and 50% irradiance. Malondialdehyde (MDA) content, relative electrolyte conductivity (REC), superoxide anion (O(.-) 2) production, and peroxide (H2O2) content were lower under 75% irradiance. The less pronounced plant growth under 100% and 25% irradiance was associated with a decline in photosynthetic capacity and photochemical efficiency, with increases in the activity of specific antioxidants (i.e., superoxidase dismutase, peroxidase, and catalase), and with increases in MDA content and REC. Lower levels of irradiance were associated with significantly higher concentrations of chlorophyll (Chl) a and b and lower Chla/b ratios. Stomatal development was most pronounced under 75% irradiance. Modification of chloroplast development was found to be an important mechanism of responding to different light intensities in C. acuminata. The results indicated that 75% irradiance is optimal for the growth of C. acuminata seedlings. The improvement in C. acuminata growth under 75% irradiance was attributable to increased photosynthesis, less accumulation of ROS, and the maintenance of the stomatal and chloroplast structure.