91 results on '"Yeon‐Jae Choi"'
Search Results
2. Five new species of Bryaxis Kugelann (Coleoptera, Staphylinidae, Pselaphinae) from Korea and a nomenclatural note on Bryaxis mahunkai Löbl
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Yeon-Jae Choi, Sun-Jae Park, Seung-Gyu Lee, and Jong-Seok Park
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Zoology ,QL1-991 - Abstract
The genus Bryaxis Kugelann (Goniaceritae: Bythinini) is the most species-rich genus of the subfamily Pselaphinae and is mainly distributed in the Palearctic region. Although previous studies have documented 14 species in the Korean Peninsula, the true diversity, ecology, and immature stages of the genus are still inadequately known. In this study, five new Korean species are described: B. grandinodus sp. nov., B. uljinensis sp. nov., B. fabaiformis sp. nov., B. girinensis sp. nov., and B. nemorosus sp. nov. Illustrations of the habitus and other morphological details, and a distribution map are provided. In addition, Bryaxis leechanyoungi Nomura & Lee, 1993 is proposed as a new synonym of B. mahunkai Löbl, 1975 based on the original description and illustrations of diagnostic characters.
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- 2023
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3. Effect of Toothbrushing Application for Kids on Dental Plaque Removal and Interest in Toothbrushing of Preschool Children
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Chae-Ha Hwang, Hyeon-Ju Song, Min-Ji Jung, Yeon-Jae Choi, and Young Sun Hwang
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dental caries ,dental plaque ,mobile applications ,oral hygiene ,toothbrushing ,Dentistry ,RK1-715 - Abstract
Background: Dental caries in preschool children can cause early loss of teeth, reduced masticatory function, malocclusion, and speech disorders, making oral care for preschool children essential. However, because children have a poor ability to perform oral hygiene by themselves, educational tools that help establish correct oral health behaviors are required. This study evaluated the effect of toothbrushing application for kids on dental plaque removal and toothbrushing interest in preschool children.Methods: Seven 5-year-old children enrolled in a daycare center participated in the evaluation, and the same children participated in the experiment twice a week. The Pokémon Smile application (App) was used as an auxiliary application for tooth brushing, and the degree of dental plaque removal on the tooth surface was evaluated by quantitative light-induced fluorescence-digital imaging. After the experiment, children’s toothbrushing preferences were investigated through interviews. Results: The levels of AREA R30 and AREA R70 measured after the children’s toothbrushing as usual decreased compared to those before toothbrushing; however, the change was not significant. The levels of AREA R30 and AREA R70 measured after using the Pokémon Smile App were significantly reduced compared to those before toothbrushing. Children’s interest in brushing their teeth increased by 28.59% after using the Pokémon Smile App. Conclusion: The toothbrushing application for kids effectively removes dental plaque by helping preschool children brush their teeth. It also increased preschool children’s interest in tooth brushing. Therefore, an oral health education application would be useful for children who need to develop correct oral care methods and habits.
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- 2023
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4. The Cas9-gRNA ribonucleoprotein complex-mediated editing of pyrG in Ganoderma lucidum and unexpected insertion of contaminated DNA fragments
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Hyerang Eom, Yeon-Jae Choi, Rutuja Nandre, Hui-Gang Han, Sinil Kim, Minseek Kim, Youn-Lee Oh, Takehito Nakazawa, Yoichi Honda, and Hyeon-Su Ro
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Medicine ,Science - Abstract
Abstract Gene editing is a promising alternative to traditional breeding for the generation of new mushroom strains. However, the current approach frequently uses Cas9-plasmid DNA to facilitate mushroom gene editing, which can leave residual foreign DNA in the chromosomal DNA raising concerns regarding genetically modified organisms. In this study, we successfully edited pyrG of Ganoderma lucidum using a preassembled Cas9-gRNA ribonucleoprotein complex, which primarily induced a double-strand break (DSB) at the fourth position prior to the protospacer adjacent motif. Of the 66 edited transformants, 42 had deletions ranging from a single base to large deletions of up to 796 bp, with 30 being a single base deletion. Interestingly, the remaining 24 contained inserted sequences with variable sizes at the DSB site that originated from the fragmented host mitochondrial DNA, E. coli chromosomal DNA, and the Cas9 expression vector DNA. The latter two were thought to be contaminated DNAs that were not removed during the purification process of the Cas9 protein. Despite this unexpected finding, the study demonstrated that editing G. lucidum genes using the Cas9-gRNA complex is achievable with comparable efficiency to the plasmid-mediated editing system.
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- 2023
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5. Oropharyngeal, proximal colonic, and vaginal microbiomes of healthy Korean native black pig gilts
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Andrew Wange Bugenyi, Ma-Ro Lee, Yeon-Jae Choi, Ki-Duk Song, Hak-Kyo Lee, Young-Ok Son, Dong-Sun Lee, Sang-Chul Lee, Young-June Son, and Jaeyoung Heo
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Oropharyngeal ,Vaginal ,Proximal colon ,Microbiome ,Jeju black pigs ,Microbiology ,QR1-502 - Abstract
Abstract Background Exploring the microbiome in multiple body sites of a livestock species informs approaches to promote its health and performance through efficient and sustainable modulation of these microbial ecosystems. Here, we employed 16S rRNA gene sequencing to describe the microbiome in the oropharyngeal cavity, proximal colon, and vaginal tract of Jeju Black pigs (JBP), which are native to the Korean peninsula. Results We sampled nine 7-month-old JBP gilts raised under controlled conditions. The most abundant phyla that we found within the oropharyngeal microbiota were Proteobacteria, Bacteroidetes, Fusobacteria and Firmicutes, collectively providing core features from twenty-five of their genera. We also found a proximal colonic microbial core composed of features from twenty of the genera of the two predominant phyla, Firmicutes, and Bacteroidetes. Remarkably, within the JBP vaginal microbiota, Bacteroidetes dominated at phylum level, contrary to previous reports regarding other pig breeds. Features of the JBP core vaginal microbiota, came from seventeen genera of the major phyla Bacteroidetes, Firmicutes, Proteobacteria, and Fusobacteria. Although these communities were distinct, we found some commonalities amongst them. Features from the genera Streptococcus, Prevotella, Bacillus and an unclassified genus of the family Ruminococcaceae were ubiquitous across the three body sites. Comparing oropharyngeal and proximal colonic communities, we found additional shared features from the genus Anaerorhabdus. Between oropharyngeal and vaginal ecosystems, we found other shared features from the genus Campylobacter, as well as unclassified genera from the families Fusobacteriaceae and Flavobacteriaceae. Proximal colonic and vaginal microbiota also shared features from the genera Clostridium, Lactobacillus, and an unclassified genus of Clostridiales. Conclusions Our results delineate unique and ubiquitous features within and across the oropharyngeal, proximal colonic and vaginal microbial communities in this Korean native breed of pigs. These findings provide a reference for future microbiome-focused studies and suggest a potential for modulating these communities, utilizing ubiquitous features, to enhance health and performance of the JBP.
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- 2023
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6. High-quality metagenome-assembled genomes from proximal colonic microbiomes of synbiotic-treated korean native black pigs reveal changes in functional capacity
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Jaehoon Jung, Andrew W. Bugenyi, Ma-Ro Lee, Yeon-Jae Choi, Ki-Duk Song, Hak-Kyo Lee, Young-Ok Son, Dong-Sun Lee, Sang-Chul Lee, Young-June Son, and Jaeyoung Heo
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Medicine ,Science - Abstract
Abstract Synbiotics are feed supplements with the potential to promote health and productivity in pigs partly, through modulation of the intestinal microbiome. Our study used shotgun sequencing and 16S rRNA gene sequencing techniques to characterize the effect of a synbiotic containing three Lactobacillus species and a fructo-oligosaccharide on the proximal colonic microbiome of 4- to 7-month-old Korean native black gilts. With shotgun sequencing we constructed unique metagenome-assembled genomes of gut microbiota in Native Black Pig for the first time, which we then used for downstream analysis. Results showed that synbiotic treatment did not alter microbial diversity and evenness within the proximal colons, but altered composition of some members of the Lactobacillaceae, Enterococcaceae and Streptococcaceae families. Functional analysis of the shotgun sequence data revealed 8 clusters of orthologous groups (COGs) that were differentially represented in the proximal colonic microbiomes of synbiotic-treated Jeju black pigs relative to controls. In conclusion, our results show that administering this synbiotic causes changes in the functional capacity of the proximal colonic microbiome of the Korean native black pig. This study improves our understanding of the potential impact of synbiotics on the colonic microbiome of Korean native black pigs.
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- 2022
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7. Complete mitochondrial genome of Aleochara (Aleochara) curtula (Goeze, 1777) (Coleoptera: Staphylinidae)
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Chan-Jun Lee, Ji-Wook Kim, Jeesoo Yi, Yeon‐Jae Choi, Sangil Kim, Mi-Jeong Jeon, Jong-Seok Park, and Sung-Jin Cho
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aleocharinae ,mitogenome ,rove beetle ,Genetics ,QH426-470 - Abstract
The mitochondrial genome (mitogenome) of Aleochara (Aleochara) curtula (Goeze, 1777) (Coleoptera: Staphylinidae) is reported. This mitogenome (GenBank accession no. OL675411) is 16,600 bp in size and consists of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA genes (rRNA). Most PCGs use typical mitochondrial stop codon (TAR) except for cox3, which uses a single T residue. The A, G, T, and C nucleotide base composition of the mitogenome is 40.61%, 7.66%, 40.34%, and 11.39%, respectively. The phylogenetic analyses recovered the monophyly of Aleocharinae.
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- 2023
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8. Construction of a CRISPR/Cas9-Mediated Genome Editing System in Lentinula edodes
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Suyun Moon, Jee Young An, Yeon-Jae Choi, Youn-Lee Oh, Hyeon-Su Ro, and Hojin Ryu
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crispr/cas9 ,lentinula edodes ,hd1 ,gene editing ,Botany ,QK1-989 - Abstract
CRISPR/Cas9 genome editing systems have been established in a broad range of eukaryotic species. Herein, we report the first method for genetic engineering in pyogo (shiitake) mushrooms (Lentinula edodes) using CRISPR/Cas9. For in vivo expression of guide RNAs (gRNAs) targeting the mating-type gene HD1 (LeA1), we identified an endogenous LeU6 promoter in the L. edodes genome. We constructed a plasmid containing the LeU6 and glyceraldehyde-3-phosphate dehydrogenase (LeGPD) promoters to express the Cas9 protein. Among the eight gRNAs we tested, three successfully disrupted the LeA1 locus. Although the CRISPR-Cas9–induced alleles did not affect mating with compatible monokaryotic strains, disruption of the transcription levels of the downstream genes of LeHD1 and LeHD2 was detected. Based on this result, we present the first report of a simple and powerful genetic manipulation tool using the CRISPR/Cas9 toolbox for the scientifically and industrially important edible mushroom, L. edodes.
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- 2021
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9. A new species of the genus Lederina Nikitsky and Belov (Coleoptera: Melandryidae) in Korea
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Yeon-Jae Choi, Sun-Jae Park, A-Young Kim, and Jong-Seok Park
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Korea ,Lederina ,Morphology ,New species ,Taxonomy ,Ecology ,QH540-549.5 - Abstract
A new species, Lederina koreana sp. nov., belonging to the family Melandryidae Leach, 1815 is described in Korea. This species is represented by four specimens that were collected by sifting leaf, soil, or dead wood litter near a stream of northern South Korea. Illustrations of habitus, diagnostic characters, and a distribution map are provided.
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- 2020
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10. Simultaneous Quantification of Chloramphenicol, Thiamphenicol, Florfenicol, and Florfenicol Amine in Animal and Aquaculture Products Using Liquid Chromatography-Tandem Mass Spectrometry
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Hae-Ni Jung, Da-Hee Park, Yeon-Jae Choi, Se-Hyeong Kang, Hee-Jung Cho, Jeong-Min Choi, Jae-Han Shim, Ahmed A. Zaky, A. M. Abd El-Aty, and Ho-Chul Shin
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chloramphenicol ,thiamphenicol ,florfenicol ,florfenicol amine ,residue analysis ,LC-MS/MS ,Nutrition. Foods and food supply ,TX341-641 - Abstract
The accumulation of antimicrobial residues in edible animal products and aquaculture products could pose health concerns to unsuspecting consumers. Hence, this study aimed to develop a validated method for simultaneous quantification of chloramphenicol (CAP), thiamphenicol (TAP), florfenicol (FF), and florfenicol amine (FFA) in beef, pork, chicken, shrimp, eel, and flatfish using a quick, easy, cheap, effective, rugged, and safe (QuEChERS) extraction method coupled with liquid chromatography-tandem mass spectrometry (LC-MS/MS). Primary-secondary amine (PSA) and MgSO4 were used for sample purification. The analytes were separated on a reversed-phase analytical column. The coefficients of determination for the linear matrix-matched calibration curves were ≥0.9941. Recovery rates ranged between 64.26 and 116.51% for the four analytes with relative standard deviations (RSDs) ≤ 18.05%. The calculated limits of detection (LODs) and limits of quantification (LOQs) were 0.005–3.1 and 0.02–10.4 μg/kg, respectively. The developed method was successfully applied for monitoring samples obtained from local markets in Seoul, Republic of Korea. The target residues were not detected in any tested matrix. The designed method was versatile, sensitive, and proved suitable for quantifying residues in animal-derived products.
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- 2022
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11. Structural Analysis of the A Mating Type Locus and Development of the Mating Type Marker of Agaricus bisporus var. bisporus
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Yeon-Jae Choi, Sujin Jung, Hyerang Eom, Thimen Hoang, Hui-Gang Han, Sinil Kim, and Hyeon-Su Ro
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Agaricus bisporus ,A mating type ,transposon ,nuclear marker ,Biology (General) ,QH301-705.5 - Abstract
Karyotyping in Agaricus bisporus is crucial for both the isolation of homokaryotic strains and the confirmation of dikaryon establishment. For the verification of the karyotype, the A mating type loci of two homokaryotic strains, H39 and H97, were analyzed through comparative sequence analysis. The two loci showed major differences in two sequence regions designated as Region 1 and Region 2. H97 had a putative DNA transposon in Region 1 that had target site duplications (TSDs), terminal inverted repeats (TIRs), and a loop sequence, in contrast to H39, which only had the insertional target sequence. Homologous sequences of the transposon were discovered in the two different chromosomes of H97 and in one of H39, all of which have different TSDs but share high sequence homology in TIR. Region 2 shared three consensus sequences between H97 and H39. However, it was only from H97 that a large insertional sequence of unknown origin was discovered between the first and second consensus sequences. The difference in length in Region 1, employed for the verification of the A mating type, resulted in the successful verification of mating types in the heterokaryotic and homokaryotic strains. This length difference enables the discrimination between homo- and heterokaryotic spores by PCR. The present study suggests that the A mating type locus in A. bisporus H97 has evolved through transposon insertion, allowing the discrimination of the mating type, and thus the nuclear type, between A. bisporus H97 and H39.
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- 2023
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12. Characterization and Functional Test of Canine Probiotics
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Hyun-Jun Jang, Seungwoo Son, Jung-Ae Kim, Min Young Jung, Yeon-jae Choi, Dae-Hyuk Kim, Hak Kyo Lee, Donghyun Shin, and Yangseon Kim
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canine ,probiotics ,Lactobacillus ,Bifidobacterium ,feed additives ,Microbiology ,QR1-502 - Abstract
Probiotics can modulate the composition of gut microbiota and benefit the host animal health in multiple ways. Lactic acid bacteria (LAB), mainly Lactobacillus and Bifidobacterium species, are well-known microbes with probiotic potential. In the present study, 88 microbial strains were isolated from canine feces and annotated. Among these, the four strains CACC517, 537, 558, and 566 were tested for probiotic characteristics, and their beneficial effects on hosts were evaluated both in vitro and in vivo; these strains exhibited antibiosis, antibiotic activity, acid and bile tolerance, and relative cell adhesion to the HT-29 monolayer cell line. Byproducts of these strains increased the viability and decreased oxidative stress in mouse and dog cell lines (RAW264.7 and DH82, respectively). Subsequently, when the probiotics were applied to the clinical trial, changes in microbial composition and relative abundance of bacterial strains were clearly observed in the experimental animals. Experimental groups before and after the application were obviously separated from PCA analysis of clinical results. Conclusively, these results could provide comprehensive understanding of the effects of probiotic strains (CACC517, 537, 558, and 566) and their industrial applications.
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- 2021
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13. Use of Lysozyme as a Feed Additive on Rumen Fermentation and Methane Emission
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Ashraf A. Biswas, Sung Sill Lee, Lovelia L. Mamuad, Seon-Ho Kim, Yeon-Jae Choi, Gui-Seck Bae, Kichoon Lee, Ha-Guyn Sung, and Sang-Suk Lee
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Lysozyme ,Methane ,Ruminant ,Volatile Fatty Acid ,Animal culture ,SF1-1100 ,Animal biochemistry ,QP501-801 - Abstract
This study was conducted to determine the effect of lysozyme addition on in vitro rumen fermentation and to identify the lysozyme inclusion rate for abating methane (CH4) production. An in vitro ruminal fermentation technique was done using a commercial concentrate to rice straw ratio of 8:2 as substrate. The following treatments were applied wherein lysozyme was added into 1 mg dry matter substrate at different levels of inclusion: Without lysozyme, 2,000, 4,000, and 8,000 U lysozyme. Results revealed that, lysozyme addition had a significant effect on pH after 24 h of incubation, with the highest pH (p
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- 2016
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14. Beneficial roles of probiotics on the modulation of gut microbiota and immune response in pigs.
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Donghyun Shin, Sung Yong Chang, Paul Bogere, KyeongHye Won, Jae-Young Choi, Yeon-Jae Choi, Hak Kyo Lee, Jin Hur, Byung-Yong Park, Younghoon Kim, and Jaeyoung Heo
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Medicine ,Science - Abstract
The importance of probiotics in swine production is widely acknowledged as crucial. However, gaps still remain in the exact roles played by probiotics in modulation of gut microbiota and immune response. This study determined the roles of probiotic Lactobacillus plantarum strain JDFM LP11in gut microbiota modulation and immune response in weaned piglets. L. plantarum JDFM LP11 increased the population of lactic acid bacteria in feces and enhanced the development of villi in the small intestine. Metagenome analysis showed that microbial diversity and richness (Simpson, Shannon, ACE, Chao1) and the relative abundance of the Firmicutes were higher in weaned piglets fed probiotics. Five bacterial families were different in the relative abundance, especially; Prevotellaceae occupied the largest part of microbial community showed the most difference between two groups. Transcriptome analysis identified 25 differentially expressed genes using RNA-sequencing data of the ileum. Further gene ontology and immune DB analysis determined 8 genes associated with innate defense response and cytokine production. BPI, RSAD2, SLPI, LUM, OLFM4, DMBT1 and C6 genes were down-regulated by probiotic supplementation except PLA2G2A. PICRUSt analysis predicting functional profiling of microbial communities indicated branched amino acid biosynthesis and butyrate metabolism promoting gut development and health were increased by probiotics. Altogether, our data suggest that L. plantarum JDFM LP11 increases the diversity and richness in the microbial community, and attenuates the ileal immune gene expression towards gut inflammation, promoting intestinal development in weaned piglets.
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- 2019
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15. Evaluation of Different Feeds for Their Potential to Generate Methane and Change Methanogen Diversity
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Seon-Ho Kim, Lovelia L. Mamuad, Chang-Dae Jeong, Yeon-Jae Choi, Sung Sill Lee, Jong-Youl Ko, and Sang-Suk Lee
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Feeds Evaluation ,Methanogen Diversity ,Methane Production ,Ruminal Fermentation ,Animal culture ,SF1-1100 ,Animal biochemistry ,QP501-801 - Abstract
Optimization of the dietary formulation is the most effective way to reduce methane. Nineteen feed ingredients (brans, vegetable proteins, and grains) were evaluated for their potential to generate methane and change methanogen diversity using an in vitro ruminal fermentation technique. Feed formulations categorized into high, medium and low production based on methane production of each ingredient were then subjected to in vitro fermentation to determine the real methane production and their effects on digestibility. Methanogen diversity among low, medium and high-methane producing groups was analyzed by PCR-DGGE. The highest methane production was observed in Korean wheat bran, soybean and perilla meals, and wheat and maize of brans, vegetable protein and cereal groups, respectively. On the other hand, corn bran, cotton seed meal and barley led to the lowest production in the same groups. Nine bacteria and 18 methanogen 16s rDNA PCR-DGGE dominant bands were identified with 83% to 99% and 92% to 100% similarity, respectively. Overall, the results of this study showed that methane emissions from ruminants can be mitigated through proper selection of feed ingredients to be used in the formulation of diets.
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- 2013
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16. Complete mitochondrial genome of the Chinese Callipogon (Eoxenus) relictus (Cerambycidae: Prioninae) with phylogenetic analyses
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Yeon-Jae Choi, Taeyoung Jang, A-Young Kim, Jong-Seok Park, and Sung-Jin Cho
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Genetics ,Molecular Biology ,Biochemistry - Published
- 2023
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17. The Power of the Weak in the WTO How David Overcome Goliath
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Mamoun Benmamoun, Hadi Alhorr, Yeon Jae Choi, and Alex Brinkmeier
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Geography, Planning and Development - Published
- 2023
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18. Double-gene targeting with preassembled Cas9 ribonucleoprotein for safe genome editing in the edible mushroomPleurotus ostreatus
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Tatpong Boontawon, Takehito Nakazawa, Yeon-Jae Choi, Hyeon-Su Ro, Minji Oh, Moriyuki Kawauchi, Masahiro Sakamoto, and Yoichi Honda
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Genetics ,Molecular Biology ,Microbiology - Abstract
CRISPR/Cas9 has potential for efficient molecular breeding. Recently, a foreign-DNA-free gene-targeting technology was established by introducing a preassembled Cas9 ribonucleoprotein (RNP) complex into the oyster mushroom Pleurotus ostreatus. However, the target gene was restricted to such a gene like pyrG, since screening of a genome-edited strain was indispensable and could be performed via examination of 5-fluoroorotic acid (5-FOA) resistance caused by the disruption of the target gene. In this study, we simultaneously introduced the Cas9 RNP complex targeting fcy1, a mutation that conferred P. ostreatus resistance to 5-fluorocytosine (5-FC), together with that targeting pyrG. A total of 76 5-FOA resistant strains were isolated during the first screening. Subsequently, a 5-FC resistance examination was conducted, and three strains exhibited resistance. Genomic PCR experiments followed by DNA sequencing revealed that mutations were successfully introduced into fcy1 and pyrG in the three strains. The results indicated that double gene-edited mutants could be obtained in one experiment employing 5-FOA resistance screening for strains with Cas9 RNP incorporation. This work may pave the way for safe CRISPR/Cas9 technology to isolate mutant strains in any gene of interest without an ectopic marker gene.
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- 2023
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19. Comparative structural analysis on the mitochondrial DNAs from various strains of Lentinula edodes
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Sinil Kim, Hyerang Eom, Rutuja Nandre, Yeon Jae Choi, Hwayong Lee, Hojin Ryu, and Hyeon-Su Ro
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Microbiology (medical) ,Microbiology - Abstract
The evolution of mitochondria through variations in mitochondrial DNA (mtDNA) is one of the intriguing questions in eukaryotic cells. In order to assess the causes of the variations in mitochondria, the mtDNAs of the 21 strains of Lentinula edodes were assembled for this study, and analyzed together with four published mtDNA sequences. The mtDNAs were within the sizes of 117 kb ~ 122 kb. The gene number was observed consistent except for two mtDNAs, which carry a duplicated trnG1-trnG2 unit or a putative gene deletion. The size variation was largely attributed to the number of introns, repeated sequences, transposable elements (TEs), and plasmid-related sequences. Intron loss and gain were found from cox1, rnl, and rns of three mtDNAs. Loss of two introns in cox1 of KY217797.1 reduced its size by 2.7 kb, making it the smallest cox1 gene (8.4 kb) among the cox1s of the 25 mtDNAs, whereas gain of a Group II intron (2.65 kb) and loss of a Group I intron (1.7 kb) in cox1 of MF774813.1 resulted in the longest cox1 (12 kb). In rnl of L. edodes, we discovered four intron insertion consensus sequences which were unique to basidiomycetes but not ascomycetes. Differential incorporation of introns was the primary cause of the rnl size polymorphism. Homing endonucleases (HEGs) were suggestively involved in the mobilization of the introns because all of the introns have HEG genes of the LAGRIDADG or GIY-YIG families with the conserved HEG cleavage sites. TEs contributed to 11.04% of the mtDNA size in average, of which 7.08% was LTR-retrotransposon and 3.96% was DNA transposon, whereas the repeated sequences covered 4.6% of the mtDNA. The repeat numbers were variable in a strain-dependent manner. Both the TEs and repeated sequences were mostly found in the intronic and intergenic regions. Lastly, two major deletions were found in the plasmid-related sequence regions (pol2-pol3 and pol1-atp8) in the five mtDNAs. Particularly, the 6.8 kb-long deletion at pol2-pol3 region made MF774813.1 the shortest mtDNA of all. Our results demonstrate that mtDNA is a dynamic molecule that persistently evolves over a short period of time by insertion/deletion and repetition of DNA segments at the strain level.
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- 2022
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20. 자기노출 성향이 UGC 마케팅 커뮤니케 이션에 미치는 영향
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Sanghak Lee and Yeon Jae Choi
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- 2021
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21. Heterokaryosis, the main obstacle in the generation of PPO1-edited Agaricus bisporus by CRISPR/Cas9 system
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Yeon Jae Choi, Hyerang Eom, Seong-Hyeok Yang, Rutuja Nandre, Sinil Kim, Minseek Kim, Youn-Lee Oh, Takehito Nakazawa, Yoichi Honda, and Hyeon-Su Ro
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Horticulture - Published
- 2023
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22. Improved device efficiency and lifetime of green thermally activated delayed fluorescence materials with multiple donors and cyano substitution
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Jeong-Yeol Yoo, Yeon Jae Choi, Kyuong Wan Kim, Tae Hoon Ha, and Chil Won Lee
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Process Chemistry and Technology ,General Chemical Engineering - Published
- 2023
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23. Lifetime evaluation of thermally activated delayed fluorescence materials according to the positions of CN substituents
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Tae Hoon Ha, Kyuong Wan Kim, Yeon Jae Choi, Seung Wan Kang, Jeong Yeol Yoo, and Chil Won Lee
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Biophysics ,General Chemistry ,Condensed Matter Physics ,Biochemistry ,Atomic and Molecular Physics, and Optics - Published
- 2023
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24. Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure
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Yeon‐Jae Choi, Jeesoo Yi, Chan-Jun Lee, Ji-Wook Kim, Mi-Jeong Jeon, Jong-Seok Park, and Sung-Jin Cho
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Coleoptera ,Republic of Korea ,Genetics ,Animals ,Genetic Variation ,Molecular Biology ,Biochemistry ,Microsatellite Repeats - Abstract
Background The family Staphylinidae is the most speciose beetle group in the world. The outbreaks of two staphylinid species, Paederus fuscipes and Aleochara (Aleochara) curtula, were recently reported in South Korea. None of research about molecular markers and genetic diversity have been conducted in these two species. Objective To develop microsatellite markers and analyze the genetic diversity and population structures of two rove beetle species. Methods NGS was used to sequence whole genomes of two species, Paederus fuscipes and Aleochara (Aleochara) curtula. Microsatellite loci were selected with flanking primer sequences. Specimens of P. fuscipes and A. curtula were collected from three localities, respectively. Genetic diversity and population structure were analyzed using the newly developed microsatellite markers. Results The number of alleles ranged 5.727–6.636 (average 6.242) and 2.182–5.364 (average 4.091), expected heterozygosity ranged 0.560–0.582 (average 0.570) and 0.368–0.564 (average 0.498), observed heterozygosity ranged 0.458–0.497 (average 0.472) and 0.418–0.644 (average 0.537) in P. fuscipes and A. curtula, respectively. Population structure indicates that individuals of A. curtula are clustered to groups where they were collected, but those of P. fuscipes are not. Conclusion Population structures of P. fuscipes were shallow. In A. curtula, however, it was apparent that the genetic compositions of the populations are different significantly depending on collection localities.
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- 2022
25. Slippery Colloidal Crystal Monolayers for Sustainable Enhancement of Commercial Solar Cell Performance
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Yeon Jae Choi, Eun Chul Cho, and Seung Beom Pyun
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Materials science ,Photovoltaic system ,Energy Engineering and Power Technology ,Colloidal crystal ,law.invention ,Adsorption ,Chemical engineering ,law ,Monolayer ,Solar cell ,Materials Chemistry ,Electrochemistry ,Chemical Engineering (miscellaneous) ,Electrical and Electronic Engineering - Abstract
The performance of photovoltaic devices can be improved and sustained when their surfaces are designed to increase light absorption of photoactive layers and minimize contaminant adsorption. Pyrami...
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- 2020
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26. An Exploratory Analysis of Domestic ICT Workers’ Dissatisfaction with their Jobs and Differences between Former and Incumbent Employees: Application of Topical Modeling
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Yeon Jae Choi, Ji-Yeon Kang, and Jae Yoon Chang
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Topic model ,business.industry ,Information and Communications Technology ,Big data ,Job satisfaction ,Business ,Exploratory analysis ,Marketing - Published
- 2020
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27. Oropharyngeal, proximal colonic, and vaginal microbiomes of healthy Korean native black pig gilts
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Andrew Wange Bugenyi, Ma-Ro Lee, Yeon-Jae Choi, Ki-Duk Song, Hak-Kyo Lee, Young-Ok Son, Dong-Sun Lee, Sang-Chul Lee, Young-June Son, and Jaeyoung Heo
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Microbiology (medical) ,Microbiology - Abstract
Background Exploring the microbiome in multiple body sites of a livestock species informs approaches to promote its health and performance through efficient and sustainable modulation of these microbial ecosystems. Here, we employed 16S rRNA gene sequencing to describe the microbiome in the oropharyngeal cavity, proximal colon, and vaginal tract of Jeju Black pigs (JBP), which are native to the Korean peninsula. Results We sampled nine 7-month-old JBP gilts raised under controlled conditions. The most abundant phyla that we found within the oropharyngeal microbiota were Proteobacteria, Bacteroidetes, Fusobacteria and Firmicutes, collectively providing core features from twenty-five of their genera. We also found a proximal colonic microbial core composed of features from twenty of the genera of the two predominant phyla, Firmicutes, and Bacteroidetes. Remarkably, within the JBP vaginal microbiota, Bacteroidetes dominated at phylum level, contrary to previous reports regarding other pig breeds. Features of the JBP core vaginal microbiota, came from seventeen genera of the major phyla Bacteroidetes, Firmicutes, Proteobacteria, and Fusobacteria. Although these communities were distinct, we found some commonalities amongst them. Features from the genera Streptococcus, Prevotella, Bacillus and an unclassified genus of the family Ruminococcaceae were ubiquitous across the three body sites. Comparing oropharyngeal and proximal colonic communities, we found additional shared features from the genus Anaerorhabdus. Between oropharyngeal and vaginal ecosystems, we found other shared features from the genus Campylobacter, as well as unclassified genera from the families Fusobacteriaceae and Flavobacteriaceae. Proximal colonic and vaginal microbiota also shared features from the genera Clostridium, Lactobacillus, and an unclassified genus of Clostridiales. Conclusions Our results delineate unique and ubiquitous features within and across the oropharyngeal, proximal colonic and vaginal microbial communities in this Korean native breed of pigs. These findings provide a reference for future microbiome-focused studies and suggest a potential for modulating these communities, utilizing ubiquitous features, to enhance health and performance of the JBP.
- Published
- 2022
28. WHAT IS YOUR QUEST? TO SEEK THE HOLY GRAIL! A NETNOGRAPHY OF GRAIL PRODUCT SEARCH IN BRAND COMMUNITIES.
- Author
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Yeon Jae Choi, Thompson, Scott, and Loveland, James
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BRAND communities ,CUSTOMER relations ,GRAIL ,QUALITATIVE research ,VIRTUAL communities - Published
- 2023
29. IS THERE LIFE AFTER DEATH: EXPLORING THE AFTERLIFE OF DEAD BRAND COMMUNITIES.
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Brinkmeier, Alex, Yeon Jae Choi, Thompson, Scott, and Loveland, James
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BRAND communities ,PRODUCT management ,BRAND loyalty ,CONSUMER behavior ,PRODUCT life cycle - Published
- 2023
30. Discovery and Functional Study of a Novel Genomic Locus Homologous to
- Author
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Yun Jin, Lee, Eunbi, Kim, Hyerang, Eom, Seong-Hyeok, Yang, Yeon Jae, Choi, and Hyeon-Su, Ro
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receptor ,behavior and behavior mechanisms ,activation ,Mating pheromone ,Lentinula edodes ,reproductive and urinary physiology ,Research Articles ,Research Article - Abstract
The interaction of mating pheromone and pheromone receptor from the B mating-type locus is the first step in the activation of the mushroom mating signal transduction pathway. The B mating-type locus of Lentinula edodes is composed of Bα and Bβ subloci, each of which contains genes for mating pheromone and pheromone receptor. Allelic variations in both subloci generate multiple B mating-types through which L. edodes maintains genetic diversity. In addition to the B mating-type locus, our genomic sequence analysis revealed the presence of a novel chromosomal locus 43.3 kb away from the B mating-type locus, containing genes for a pair of mating pheromones (PHBN1 and PHBN2) and a pheromone receptor (RCBN). The new locus (Bα-N) was homologous to the Bα sublocus, but unlike the multiallelic Bα sublocus, it was highly conserved across the wild and cultivated strains. The interactions of RcbN with various mating pheromones from the B and Bα-N mating-type loci were investigated using yeast model that replaced endogenous yeast mating pheromone receptor STE2 with RCBN. The yeast mating signal transduction pathway was only activated in the presence of PHBN1 or PHBN2 in the RcbN producing yeast, indicating that RcbN interacts with self-pheromones (PHBN1 and PHBN2), not with pheromones from the B mating-type locus. The biological function of the Bα-N locus was suggested to control the expression of A mating-type genes, as evidenced by the increased expression of two A-genes HD1 and HD2 upon the treatment of synthetic PHBN1 and PHBN2 peptides to the monokaryotic strain of L. edodes.
- Published
- 2022
31. The Influence of Self-Disclosure on User-Generated Content (UGC) Communication Effects: An Abstract
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Yeon Jae Choi and Sanghak Lee
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- 2022
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32. Revision of the genus Simkinion Park and Pearce (Coleoptera: Staphylinidae: Pselaphinae: Goniaceritae) from New Zealand
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Richard A. B. Leschen, Jia-Wei Shen, and Yeon-Jae Choi
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010601 ecology ,0106 biological sciences ,Geography ,biology ,Insect Science ,010607 zoology ,Zoology ,Taxonomy (biology) ,Bryophyte ,Pselaphinae ,biology.organism_classification ,01 natural sciences - Abstract
The New Zealand endemic genus Simkinion Park and Pearce, 1962 is redescribed and diagnosed to include six species, four of which are new: S. convexum sp. n., S. corniculum sp. n., S. schomannae sp....
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- 2020
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33. Survey and Microbiological Quality Control of Commercial Probiotics for Livestock in South Korea
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Yeon-Jae Choi and Sang-Suk Lee
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Antibiotic resistance ,business.industry ,Livestock ,Business ,Microbiological quality ,Biotechnology - Published
- 2019
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34. Effects of Lactic Acid Bacteria Inoculant on Fermentation Quality and in vitro Rumen Fermentation of Total Mixed Ration
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Yeon Jae Choi and Sang-Suk Lee
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biology ,Aerobic bacteria ,food and beverages ,Total mixed ration ,biology.organism_classification ,Lactic acid ,Rumen ,chemistry.chemical_compound ,chemistry ,Fermentation ,Food science ,Microbial inoculant ,Lactobacillus plantarum ,Lactic acid fermentation - Abstract
Fermented total mixed ration (TMR) is a novel feed for ruminants in South Korea. The purpose of this study was to evaluate the effects of lactic acid bacteria (LAB) on the quality of TMR and in vitro ruminal fermentation. Strains of three LAB spp. (Lactobacillus plantarum, L. brevis, L. mucosae) were used in fermentation of TMR. Inoculations with the three LAB spp. lowered pH and increased concentrations of lactic acid, acetic acid, and total organic acid compared to non-LAB inoculated control (only addition of an equivalent amount of water) (p
- Published
- 2019
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35. Enhancing Butyrate Production, Ruminal Fermentation and Microbial Population through Supplementation with Clostridium saccharobutylicum
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Eun Tae Kim, Sang Bum Kim, Chang Dae Jeong, Sung Sill Lee, Kwang Keun Cho, A-Rang Son, Lovelia L. Mamuad, Michelle A. Miguel, Sang-Suk Lee, and Yeon Jae Choi
- Subjects
0106 biological sciences ,chemistry.chemical_classification ,education.field_of_study ,Fibrobacter succinogenes ,biology ,Chemistry ,Population ,food and beverages ,General Medicine ,Butyrate ,biology.organism_classification ,01 natural sciences ,Applied Microbiology and Biotechnology ,Butyric acid ,Rumen ,chemistry.chemical_compound ,010608 biotechnology ,Propionate ,Fermentation ,Food science ,education ,Bacteria ,Biotechnology - Abstract
Butyrate is known to play a significant role in energy metabolism and regulating genomic activities that influence rumen nutrition utilization and function. Thus, this study investigated the effects of an isolated butyrate-producing bacteria, Clostridium saccharobutylicum, in rumen butyrate production, fermentation parameters and microbial population in Holstein-Friesian cow. An isolated butyrate-producing bacterium from the ruminal fluid of a Holstein-Friesian cow was identified and characterized as Clostridium saccharobutylicum RNAL841125 using 16S rRNA gene sequencing and phylogenetic analyses. The bacterium was evaluated on its effects as supplement on in vitro rumen fermentation and microbial population. Supplementation with 106 CFU/ml Clostridium saccharobutylicum increased (p < 0.05) microbial crude protein, butyrate and total volatile fatty acids concentration but had no significant effect on NH3-N at 24 h incubation. Butyrate and total VFA concentrations were higher (p < 0.05) in supplementation with 106 CFU/ml Clostridium saccharobutylicum compared with control, with no differences observed for total gas production, NH3-N and propionate concentration. However, as the inclusion rate (CFU/ml) of C. saccharobutylicum was increased, reduction of rumen fermentation values was observed. Furthermore, butyrate-producing bacteria and Fibrobacter succinogenes population in the rumen increased in response with supplementation of C. saccharobutylicum, while no differences in the population in total bacteria, protozoa and fungi were observed among treatments. Overall, our study suggests that supplementation with 106 CFU/ml C. saccharobutylicum has the potential to improve ruminal fermentation through increased concentrations of butyrate and total volatile fatty acid, and enhanced population of butyrate-producing bacteria and cellulolytic bacteria F. succinogenes.
- Published
- 2019
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36. Discovery and Functional Study of a Novel Genomic Locus Homologous to B��-Mating-Type Sublocus of Lentinula edodes
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Yun Jin Lee, Eunbi Kim, Hyerang Eom, Seong-Hyeok Yang, Yeon Jae Choi, and Hyeon-Su Ro
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lentinula edodes ,Infectious Diseases ,receptor ,QK1-989 ,Botany ,behavior and behavior mechanisms ,activation ,Microbiology ,reproductive and urinary physiology ,mating pheromone - Abstract
The interaction of mating pheromone and pheromone receptor from the B mating-type locus is the first step in the activation of the mushroom mating signal transduction pathway. The B mating-type locus of Lentinula edodes is composed of B�� and B�� subloci, each of which contains genes for mating pheromone and pheromone receptor. Allelic variations in both subloci generate multiple B mating-types through which L. edodes maintains genetic diversity. In addition to the B mating-type locus, our genomic sequence analysis revealed the presence of a novel chromosomal locus 43.3 kb away from the B mating-type locus, containing genes for a pair of mating pheromones (PHBN1 and PHBN2) and a pheromone receptor (RCBN). The new locus (B��-N) was homologous to the B�� sublocus, but unlike the multiallelic B�� sublocus, it was highly conserved across the wild and cultivated strains. The interactions of RcbN with various mating pheromones from the B and B��-N mating-type loci were investigated using yeast model that replaced endogenous yeast mating pheromone receptor STE2 with RCBN. The yeast mating signal transduction pathway was only activated in the presence of PHBN1 or PHBN2 in the RcbN producing yeast, indicating that RcbN interacts with self-pheromones (PHBN1 and PHBN2), not with pheromones from the B mating-type locus. The biological function of the B��-N locus was suggested to control the expression of A mating-type genes, as evidenced by the increased expression of two A-genes HD1 and HD2 upon the treatment of synthetic PHBN1 and PHBN2 peptides to the monokaryotic strain of L. edodes.
- Published
- 2021
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37. Optimization of Fecal Calprotectin Assay for Pig Samples
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Jaeyoung Heo, Yeon Jae Choi, and Paul Bogere
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Gut inflammation ,040301 veterinary sciences ,Chemistry ,04 agricultural and veterinary sciences ,General Medicine ,0403 veterinary science ,03 medical and health sciences ,fluids and secretions ,0302 clinical medicine ,Dilution ratio ,Double check ,030212 general & internal medicine ,Food science ,Calprotectin ,Feces ,Homogenization (biology) - Abstract
Fecal calprotectin is a noninvasive marker of gut inflammation and has been widely utilized in human gastrointestinal diagnostics. This marker, however, has not been extensively utilized in porcine samples. The aim of this study was to optimize a protocol for the extraction of porcine fecal calprotectin, and to the best of our knowledge this is the first study to be conducted in this regard. Freshly collected swine fecal samples were used in this study. We determined the variability of three commercial ELISA assays in the recovery of porcine fecal calprotectin. We further studied the effect of dilution factor and roller shaker homogenization on the yield of calprotectin from swine fecal samples. Calprotectin recovery was significantly different(p
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- 2019
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38. Flow Behaviors of Polymer Colloids and Curing Resins Affect Pore Diameters and Heights of Periodic Porous Polymer Films to Direct Their Surface and Optical Characteristics
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Ji Eun Song, Jong Seong Park, Min Gyu Kim, Ju A La, Seung Beom Pyun, Eun Chul Cho, Yeon Jae Choi, Beu Lee, and Ji Hoon Park
- Subjects
chemistry.chemical_classification ,Colloid ,Materials science ,chemistry ,Electrochemistry ,General Materials Science ,Surfaces and Interfaces ,Polymer ,Composite material ,Condensed Matter Physics ,Porosity ,Spectroscopy ,Curing (chemistry) - Abstract
Manipulation of both pore diameters and heights of two-dimensional periodic porous polymer films is important to extensively control their characteristics. However, except for using different sized colloid templates in replication methods, an effective method that tunes these factors has rarely been reported. We found that both parameters are controllable by adjusting the flow behaviors of polystyrene colloids and curing resin precursors during the preparation of phenolic resin and poly(dimethylsiloxane) periodic porous films by embedding their precursors into colloidal crystal monolayers. We adjust the flow behaviors by either varying film preparation temperatures (≥glass transition temperature of polystyrene) or using the precursors mixed with different amounts of solvents that renders the colloids viscous. Consequently, the pore diameters and film heights change by 36-56 and 56-84%, respectively. Such modulation results in the change in height to diameter ratios and the areal fractions of resins at air-film interfaces, thereby significantly changing the water contact angles on these surfaces and their photonic characteristics. This straightforward method does not require additional steps, differently sized colloids, or different amounts of precursors for these parameter controls.
- Published
- 2019
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39. Technology development strategies for electric vertical take-off and landing: focusing on the case of South Korea
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Yeon Jae Choi, Ye Yun Kwun, Sanghak Lee, and Hyun Jin Cho
- Subjects
Mechanical Engineering ,Automotive Engineering - Published
- 2022
- Full Text
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40. Enhancing Butyrate Production, Ruminal Fermentation and Microbial Population through Supplementation with
- Author
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Michelle, Miguel, Sung Sill, Lee, Lovelia, Mamuad, Yeon Jae, Choi, Chang Dae, Jeong, Arang, Son, Kwang Keun, Cho, Eun Tae, Kim, Sang Bum, Kim, and Sang Suk, Lee
- Subjects
Clostridium ,Butyrates ,Rumen ,Bacteria ,RNA, Ribosomal, 16S ,Dietary Supplements ,Fermentation ,Animals ,Cattle ,Fatty Acids, Volatile ,Animal Feed ,Phylogeny ,Gastrointestinal Microbiome - Abstract
Butyrate is known to play a significant role in energy metabolism and regulating genomic activities that influence rumen nutrition utilization and function. Thus, this study investigated the effects of an isolated butyrate-producing bacteria
- Published
- 2019
41. Solution Lithography for Colloidal Crystal Patterning: Revisiting Flory–Huggins Interaction Parameters and Co‐Nonsolvent Systems
- Author
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Yeon Jae Choi, Seung Beom Pyun, Ji Eun Song, Eun Chul Cho, and Jung Yeon Kim
- Subjects
Materials science ,Polymer science ,General Materials Science ,General Chemistry ,Colloidal crystal ,Flory–Huggins solution theory ,Condensed Matter Physics ,Lithography - Published
- 2021
- Full Text
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42. Beneficial roles of probiotics on the modulation of gut microbiota and immune response in pigs
- Author
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Hak Kyo Lee, Sung Yong Chang, Donghyun Shin, Byung-Yong Park, Jin Hur, Jae-Young Choi, Yeon-jae Choi, Kyeong-Hye Won, Jaeyoung Heo, Younghoon Kim, and Paul Bogere
- Subjects
0301 basic medicine ,Swine ,Gene Expression ,Gut flora ,Prevotellaceae ,law.invention ,Probiotic ,law ,Medicine and Health Sciences ,Immune Response ,Mammals ,education.field_of_study ,Multidisciplinary ,biology ,Eukaryota ,Genomics ,Medical Microbiology ,Vertebrates ,Small Intestine ,Medicine ,Female ,Anatomy ,Research Article ,Firmicutes ,Science ,Immunology ,030106 microbiology ,Population ,Microbial Genomics ,Microbiology ,03 medical and health sciences ,Immune system ,Genetics ,Animals ,Microbiome ,education ,Bacteria ,Probiotics ,Gut Bacteria ,Organisms ,Immunity ,Biology and Life Sciences ,biology.organism_classification ,Animal Feed ,Gastrointestinal Microbiome ,Gastrointestinal Tract ,030104 developmental biology ,Amniotes ,Digestive System ,Lactobacillus plantarum - Abstract
The importance of probiotics in swine production is widely acknowledged as crucial. However, gaps still remain in the exact roles played by probiotics in modulation of gut microbiota and immune response. This study determined the roles of probiotic Lactobacillus plantarum strain JDFM LP11in gut microbiota modulation and immune response in weaned piglets. L. plantarum JDFM LP11 increased the population of lactic acid bacteria in feces and enhanced the development of villi in the small intestine. Metagenome analysis showed that microbial diversity and richness (Simpson, Shannon, ACE, Chao1) and the relative abundance of the Firmicutes were higher in weaned piglets fed probiotics. Five bacterial families were different in the relative abundance, especially; Prevotellaceae occupied the largest part of microbial community showed the most difference between two groups. Transcriptome analysis identified 25 differentially expressed genes using RNA-sequencing data of the ileum. Further gene ontology and immune DB analysis determined 8 genes associated with innate defense response and cytokine production. BPI, RSAD2, SLPI, LUM, OLFM4, DMBT1 and C6 genes were down-regulated by probiotic supplementation except PLA2G2A. PICRUSt analysis predicting functional profiling of microbial communities indicated branched amino acid biosynthesis and butyrate metabolism promoting gut development and health were increased by probiotics. Altogether, our data suggest that L. plantarum JDFM LP11 increases the diversity and richness in the microbial community, and attenuates the ileal immune gene expression towards gut inflammation, promoting intestinal development in weaned piglets.
- Published
- 2019
43. Effects of reductive acetogenic bacteria and lauric acid on in vivo ruminal fermentation, microbial populations, and methane mitigation in Hanwoo steers in South Korea
- Author
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Kwang-Keun Cho, Lovelia L. Mamuad, Seon-Ho Kim, Haguyn G Sung, Sang-Suk Lee, and Yeon-Jae Choi
- Subjects
Male ,0301 basic medicine ,Rumen ,030106 microbiology ,Population ,Acetates ,03 medical and health sciences ,chemistry.chemical_compound ,Animal science ,Republic of Korea ,Ruminococcus ,Genetics ,Animals ,education ,chemistry.chemical_classification ,education.field_of_study ,Bacteria ,biology ,Chemistry ,Probiotics ,Fungi ,Lauric Acids ,General Medicine ,Acetogen ,Fatty Acids, Volatile ,biology.organism_classification ,Animal Feed ,Corrigenda ,Methanogen ,Lauric acid ,Diet ,030104 developmental biology ,Fermentation ,Hanwoo ,Propionate ,Cattle ,Animal Science and Zoology ,Methane ,Ruminant Nutrition ,Food Science - Abstract
Animal science nutrition studies are increasingly focusing on finding solutions to reduce methane (CH(4)) emissions. In the present study, we evaluated the effect of reductive acetogenic bacteria [acetogen probiotics (AP)] and lauric acid (LA) on in vivo rumen fermentation and microbial populations in Hanwoo steers. Four cannulated Hanwoo steers (392 ± 14 kg) were analyzed in a 4 × 4 Latin square design and were placed in hood-type chambers. They were fed similar amounts of concentrate and rice straw within and experimental design as follows: control (Con; 40 g DM basal feed, nonaddition of AP or LA), T1 = LA (40 g DM basal feed mixed with 40 g LA), T2 = AP (40 g DM basal feed, fermented with AP), and T3 = LA + AP (40 g DM basal feed, fermented with AP and mixed with 40 g LA). The animals were acclimatized to the diet for 15 d, followed by 6 d of the experimental period. Rumen fluid samples for metabolite and molecular analyses were collected 6 h after the morning feeding, with 2-h collection intervals. The enteric CH(4) production was monitored on the last 2 d of the experimental period. Concentrations of total volatile fatty acids increased with the increase in time after feeding. Acetate, propionate, and butyrate concentrations were observed to be higher in the treatments than in Con. The addition of LA and AP reduced CH(4) emission compared with that of Con (P < 0.01). Nuclear magnetic resonance spectroscopy results revealed no correlation between the LA and Con groups, but AP showed a correlation with LA and Con. Reduction in the number of protozoa which was accompanied by a decrease, because methanogens live symbiotically with protozoa. Supplementation of AP or LA alone and in combination decreased (P < 0.05) the methanogen population, whereas supplementation of LA alone significantly increased (P < 0.05) Ruminococcus flavefaciens and slightly increased total fungi. Thus, dietary supplementation of LA and AP has inhibitory effects on CH(4) production in Hanwoo cattle. If the effects of this method can be maintained, reductive acetogens could become an important part of strategies to lower ruminant CH(4) emissions.
- Published
- 2018
44. Effect of Heterofermentative Lactic Acid Bacteria on the Quality of Italian Ryegrass and Whole-crop Barley Silage
- Author
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Eun Joong Kim, Young Kyoon Oh, Yeon Jae Choi, Sang-Suk Lee, Lovelia L. Mamuad, Keun Kyu Park, and Ho-Il Lee
- Subjects
biology ,Silage ,food and beverages ,Forage ,biology.organism_classification ,Microbiology ,Lactic acid ,Crop ,Butyric acid ,chemistry.chemical_compound ,Acetic acid ,chemistry ,bacteria ,Fermentation ,Food science ,Bacteria - Abstract
KunKook University, Seoul 143-701, Republic of KoreaABSTRACTThis study was conducted to determine the quality of italian ryegrass(IRG) and whole- crop barley(WCB) silage combined with heterofermentative lactic acid bacteria(LAB) during fermentation. Six strains of LAB(L. plantarum IMAU 70164, L. acidophilus KACC 12419, L. casei KACC 12413, L. reuteri KCTC 3594, L. buchneri KACC 12416 and L. diolivorans KACC 12385) were used in this study. L. casei and L. reuteri had the highest propionic acid production and were therefore used for fermenting the forages. The forages were fermented using monoculture and co-culture of L. casei and L. reuteri for 30, 45 and 60 days of ensiling. Addition of LAB lowered the pH of the IRG silage(p
- Published
- 2014
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45. Effect of on Rumen Fermentation Characteristics of Dried Brewers Grain, Methane Production and Bacterial Diversity
- Author
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Alvin P. Soriano, Lovelia L. Mamuad, Seon-Ho Kim, Yeon Jae Choi, Chang Dae Jeong, Gui Seck Bae, Moon Baek Chang, and S. Suk Lee
- Subjects
Rumen Fermentation ,lcsh:Animal biochemistry ,Culture Supernatant ,lcsh:Animal culture ,Brewers Grain ,lcsh:QP501-801 ,lcsh:SF1-1100 - Abstract
The effects of Lactobacillus mucosae (L. mucosae), a potential direct fed microbial previously isolated from the rumen of Korean native goat, on the rumen fermentation profile of brewers grain were evaluated. Fermentation was conducted in serum bottles each containing 1% dry matter (DM) of the test substrate and either no L. mucosae (control), 1% 24 h broth culture of L. mucosae (T1), or 1% inoculation with the cell-free culture supernatant (T2). Each serum bottle was filled anaerobically with 100 mL of buffered rumen fluid and sealed prior to incubation for 0, 6, 12, 24, and 48 h from which fermentation parameters were monitored and the microbial diversity was evaluated. The results revealed that T1 had higher total gas production (65.00 mL) than the control (61.33 mL) and T2 (62.00 mL) (p
- Published
- 2014
46. Effect of Lactobacillus mucosae on In vitro Rumen Fermentation Characteristics of Dried Brewers Grain, Methane Production and Bacterial Diversity
- Author
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Gui Seck Bae, Sang Suk Lee, Yeon Jae Choi, Lovelia L. Mamuad, Alvin P. Soriano, Seon-Ho Kim, Chang Dae Jeong, and Moon Baek Chang
- Subjects
chemistry.chemical_classification ,Lactobacillus mucosae ,Biology ,biology.organism_classification ,Microbiology ,Rumen ,Korean Native ,chemistry ,Propionate ,Animal Science and Zoology ,Fermentation ,Dry matter ,Food science ,Incubation ,Temperature gradient gel electrophoresis ,Food Science - Abstract
The effects of Lactobacillus mucosae (L. mucosae), a potential direct fed microbial previously isolated from the rumen of Korean native goat, on the rumen fermentation profile of brewers grain were evaluated. Fermentation was conducted in serum bottles each containing 1% dry matter (DM) of the test substrate and either no L. mucosae (control), 1% 24 h broth culture of L. mucosae (T1), or 1% inoculation with the cell-free culture supernatant (T2). Each serum bottle was filled anaerobically with 100 mL of buffered rumen fluid and sealed prior to incubation for 0, 6, 12, 24, and 48 h from which fermentation parameters were monitored and the microbial diversity was evaluated. The results revealed that T1 had higher total gas production (65.00 mL) than the control (61.33 mL) and T2 (62.00 mL) (p
- Published
- 2014
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- View/download PDF
47. Investigating the probiotic characteristics of four microbial strains with potential application in feed industry
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Jung-Ae Kim, Joel Bayo, Dae-Hyuk Kim, Yeon Jae Choi, Yangseon Kim, Juncheol Cha, and Min Young Jung
- Subjects
0301 basic medicine ,Physiology ,Yeast and Fungal Models ,Bacillus ,Bacillus subtilis ,Pathology and Laboratory Medicine ,law.invention ,Probiotic ,Antibiotics ,law ,Lactobacillus ,Medicine and Health Sciences ,Bile ,Food science ,Multidisciplinary ,biology ,Antimicrobials ,Chemistry ,Eukaryota ,Drugs ,Lacticaseibacillus paracasei ,Anti-Bacterial Agents ,Bacterial Pathogens ,Body Fluids ,Bacillus Subtilis ,Experimental Organism Systems ,Medical Microbiology ,Saccharomyces Cerevisiae ,Prokaryotic Models ,Medicine ,Pathogens ,Anatomy ,HT29 Cells ,Research Article ,Staphylococcus aureus ,Lactobacillus paracasei ,Science ,030106 microbiology ,Saccharomyces cerevisiae ,Research and Analysis Methods ,Microbiology ,Bile Acids and Salts ,Saccharomyces ,03 medical and health sciences ,Model Organisms ,Cell Line, Tumor ,Microbial Control ,Antibiosis ,Cell Adhesion ,Humans ,Microbial Pathogens ,Pharmacology ,Bacteria ,Probiotics ,Gut Bacteria ,Organisms ,Fungi ,Biology and Life Sciences ,biology.organism_classification ,Animal Feed ,Yeast ,Gastrointestinal Tract ,030104 developmental biology ,Food Microbiology ,Animal Studies ,Digestive System ,Lactobacillus plantarum - Abstract
The present study aimed to evaluate the probiotic characteristics of certain microbial strains for potential use as feed additives. Three bacterial strains and a yeast previously isolated from different environments were investigated. The strains were subjected to molecular identification and established as Lactobacillus paracasei CP133, Lactobacillus plantarum CP134, Bacillus subtilis CP350 and Saccharomyces cerevisiae CP605. Lactobacillus sp. CP133 and CP134 exhibited antibiosis, antibiotic activity, and relative odor reduction ability. Bacillus subtilis CP350 was thermotolerant, reduced hydrogen sulfide gas and showed significant proteolytic activity, whereas Saccharomyces cerevisiae CP605 exhibited high acid and bile salt tolerance. In general, the isolates in this study demonstrated improved functional characteristics, particularly acid and bile tolerance and relative cell adhesion to HT-29 monolayer cell line. Results in this work provides multifunctional probiotic characteristics of the strains for potential development of probiotics and cleaning of the environment.
- Published
- 2019
- Full Text
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48. Glucuronidation of a Sarpogrelate Active Metabolite Is Mediated by UDP-Glucuronosyltransferases 1A4, 1A9, and 2B4
- Author
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Jae-Gook Shin, Hyo-Ji Kim, Jong Lyul Ghim, Dong-Ryul Sohn, Eun Sook Jeong, Kyung-Ah Seo, Yeon Jae Choi, Kye Jung Shin, Su-Jun Lee, and Dong-Hyun Kim
- Subjects
Pharmacology ,UGT1A4 ,UGT2B4 ,Stereochemistry ,Metabolite ,Glucuronidation ,Pharmaceutical Science ,Succinates ,Sarpogrelate ,Rats ,chemistry.chemical_compound ,Glucuronides ,chemistry ,UDP-Glucuronosyltransferase 1A9 ,Microsomes, Liver ,Microsome ,Animals ,Humans ,Serotonin Antagonists ,Glucuronosyltransferase ,Glucuronide ,Active metabolite - Abstract
Sarpogrelate is a selective serotonin 5-HT2A-receptor antagonist used to treat patients with peripheral arterial disease. This drug is rapidly hydrolyzed to its main metabolite (R,S)-1-[2-[2-(3-methoxyphenyl)ethyl]phenoxy]-3-(dimethylamino)-2-propanol (M-1), which is mainly excreted as a glucuronide conjugate. Sarpogrelate was also directly glucuronidated to an O-acyl glucuronide and a N-glucuronide by UDP-glucuronosyltransferases (UGTs) in human liver microsomes (HLMs). Since M-1 is pharmacologically more active than sarpogrelate, we examined glucuronidation of this metabolite in HLMs and characterized the UGTs responsible for M-1 glucuronidation. Diastereomers of O-glucuronide (SMG1 and SMG3) and a N-glucuronide (SMG2) were identified by incubation of M-1 with HLMs in the presence of uridine 5'-diphosphoglucuronic acid (UDPGA), and their structures were confirmed by nuclear magnetic resonance and mass spectrometry analyses. Two O-glucuronides were identified as chiral isomers: SMG1 as R-isomer and SMG3 as S-isomer. Using recombinant UGT enzymes, we determined that SMG1 and SMG3 were predominantly catalyzed by UGT1A9 and UGT2B4, respectively, whereas SMG2 was generated by UGT1A4. In addition, significant correlations were noted between the SMG1 formation rate and propofol glucuronidation (a marker reaction of UGT1A9; r = 0.6269, P < 0.0031), and between the SMG2 formation rate and trifluoperazine glucuronidation (a marker reaction of UGT1A4; r = 0.6623, P < 0.0015) in a panel of HLMs. Inhibition of SMG1, SMG2, and SMG3 formation by niflumic acid, hecogenin, and fluconazole further substantiated the involvement of UGT1A9, UGT1A4, and UGT2B4, respectively. These findings collectively indicate that UGT1A4, UGT1A9, and UGT2B4 are the major UGT isoforms responsible for glucuronidation of M-1, an active metabolite of sarpogrelate.
- Published
- 2013
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49. Effects of illite supplementation on in vitro and in vivo rumen fermentation, microbial population and methane emission of Hanwoo steers fed high concentrate diets
- Author
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Chanhee Lee, Gui-Seck Bae, Lovelia L. Mamuad, Sang-Suk Lee, Yeon-Jae Choi, Ashraf A. Biswas, Kichoon Lee, Sung Sill Lee, and Seonho Kim
- Subjects
0301 basic medicine ,Male ,animal structures ,Rumen ,Population ,engineering.material ,Beef cattle ,In Vitro Techniques ,Real-Time Polymerase Chain Reaction ,03 medical and health sciences ,Animal science ,Ruminococcus ,Animals ,Dry matter ,education ,Incubation ,education.field_of_study ,Minerals ,Dose-Response Relationship, Drug ,Chemistry ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,General Medicine ,Fatty Acids, Volatile ,040201 dairy & animal science ,Animal Feed ,Diet ,030104 developmental biology ,Agronomy ,Illite ,Hanwoo ,Dietary Supplements ,Fermentation ,engineering ,Animal Nutritional Physiological Phenomena ,Cattle ,Gases ,General Agricultural and Biological Sciences ,Methane - Abstract
This study was conducted to evaluate the effects of feeding supplemental illite to Hanwoo steers on methane (CH4 ) emission and rumen fermentation parameters. An in vitro ruminal fermentation technique was conducted using a commercial concentrate as substrate and illite was added at different concentrations as treatments: 0%, 0.5%, 1.0%, and 2.0% illite. Total volatile fatty acids (VFA) were different (P < 0.05) at 24 h of incubation where the highest total VFA was observed at 1.0% of illite. Conversely, lowest CH4 production (P < 0.01) was found at 1.0% of illite. In the in vivo experiment, two diets were provided, without illite and with addition of 1% illite. An automated head chamber (GreenFeed) system was used to measure enteric CH4 production. Cattle received illite supplemented feed increased (P < 0.05) total VFA concentrations in the rumen compared with those fed control. Feeding illite numerically decreased CH4 production (g/day) and yield (g/kg dry matter intake). Rumen microbial population analysis indicated that the population of total bacteria, protozoa and methanogens were lower (P < 0.05) for illite compared with the control. Accordingly, overall results suggested that feeding a diet supplemented with 1% illite can have positive effects on feed fermentation in the rumen and enteric CH4 mitigation in beef cattle.
- Published
- 2016
50. Quantitative Real-time PCR using Lactobacilli as Livestock Probiotics
- Author
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Yeon-Jae Choi, Gui-Seok Bae, Che Ok Jeon, Sun Ho Kim, Sang-Bum Cho, Su-Ki Kim, Dong-Un Kim, Sang Seok Lee, Han-Na Choe, and Min-Jeong Gu
- Subjects
Quantitative Real Time PCR ,Real-time polymerase chain reaction ,Biology ,Molecular cloning ,Molecular biology - Abstract
본 연구는 가축생균제용 유산균을 Real-time PCR정량분석법을 이용하여 분석하였다. SYBR Green1 방법과 Probe 방법을 이용하여 표준곡선을 제작한 결과, SYBR Green1 방법에서는 Slope 값이 -3.346이었고, Y절편은 33.18, $R^2$ 값은 0.993으로 나타났으며, Probe 방법에서는 Slope값이 -3.321이었고, Y절편은 39.10, $R^2$ 값은 0.995로 나타나, 이를 이용한 표준곡선 제작이 가능함을 알 수 있었다. SYBR Green1 방법을 이용한 생균제의 Lactobacilli 정성 정량 분석결과 Real-time PCR값은 4.46~6.56 log copies로 나타났고, 생균수 측정 결과 값은 5.63~7.59 log CFU/g로 나타났으며, Probe 방법을 이용한 생균제의 Lactobacilli 정성 정량 분석결과에서는 Real-time PCR 값은 5.51~7.00 log copies로 나타났으며, 생균수 측정 결과 값은 5.63~7.59 log CFU/g로 나타났다. 본 연구에서 실시한 RT PCR법은 3~4일이 소요되는 기존의 배지법과 비교하여 24시간 이내에 신속하게 검출이 가능하다고 여겨지며, 또한 RT PCR을 이용한 분석방법에서도 dye 사용과 primer 사용에 따라 결과값이 차이가 나타났음을 확인할 수 있었으며, Probe 방법을 이용하여 실험 한 결과가 민감한 결과를 나타내었음을 확인 할 수 있었다. 【This study was conducted using quantitative real-time PCR using Lactobacilli as probiotics. Quantitative real-time PCR (RT PCR) was conducted via a method involving SYBR Green 1 and a probe. Plasmid DNA was cloned using the 16S-23S rRNA intergenic species region. Gene clones were diluted from $10^2$ to $10^{10}$ . Standard curves were constructed via Ct values obtained from the results of Real-time PCR via the aforementioned SYBR Green 1 and probe method. Plasmid DNA was also cloned using the 16S-23S rRNA intergenic species region and the gene clones were diluted from $10^2$ to $10^{10}$ copy numbers via the probe method. Using RT PCR, a standard curve of plasmid DNA copy numbers was also determined. The slope value for the Y-axis intercept and $R^2$ value were measured as -3.346, 33.18, and 0.993, respectively, via the first method. For the second method, the slope value for the Y-axis intercept and $R^2$ were -3.321, 31.10 and 0.995, respectively. The PCR inhibitor could not express the detection curve at a copy number over $10^{10}$ via either method, owing to high DNA density. The DNA extract from probiotics was diluted without pre-culturing, and 16 products were amplified via both methods. The Ct value was 11.06~18.12 in the first method and 16.74~22.11 in the second method. Measured probiotics and log copy values were largely similar among the methods used. It was concluded that both methods are effective for analysis, but further research will be required to verify the optimal method.】
- Published
- 2010
- Full Text
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