27 results on '"Yegneswaran S"'
Search Results
2. Karaikal Port Private Limited
- Author
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Nambissan, S., Ramakrishnan, S., Yegneswaran, S., and ProfessorG. Raghuram
- Published
- 2014
- Full Text
- View/download PDF
3. Targeted inhibition of activated protein C by a non-active-site inhibitory antibody to treat hemophilia
- Author
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Zhao, X.-Y., Wilmen, A., Wang, D., Wang, X., Bauzon, M., Kim, J.-Y., Linden, L., Li, L., Egner, U., Marquardt, T., Moosmayer, D., Tebbe, J., Glück, J.M., Ellinger, P., McLean, K., Yuan, S., Yegneswaran, S., Jiang, X., Evans, V., Gu, J.-M., Schneider, D., Zhu, Y., Xu, Y., Mallari, C., Hesslein, A., Wang, Y., Schmidt, N., Gutberlet, K., Ruehl-Fehlert, C., Freyberger, A., and Publica
- Abstract
Activated protein C (APC) is a plasma serine protease with antithrombotic and cytoprotective functions. Based on the hypothesis that specific inhibition of APC's anticoagulant but not its cytoprotective activity can be beneficial for hemophilia therapy, 2 types of inhibitory monoclonal antibodies (mAbs) are tested: A type I active-site binding mAb and a type II mAb binding to an exosite on APC (required for anticoagulant activity) as shown by X-ray crystallography. Both mAbs increase thrombin generation and promote plasma clotting. Type I blocks all APC activities, whereas type II preserves APC's cytoprotective function. In normal monkeys, type I causes many adverse effects including animal death. In contrast, type II is well-tolerated in normal monkeys and shows both acute and prophylactic dose-dependent efficacy in hemophilic monkeys. Our data show that the type II mAb can specifically inhibit APC's anticoagulant function without compromising its cytoprotective function and offers superior therapeutic opportunities for hemophilia.
- Published
- 2020
4. Manipulation of thrombin exosite I, by ligand‐directed covalent modification
- Author
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YEGNESWARAN, S., TIEFENBRUNN, T.K., FERNÁNDEZ, J.A., and DAWSON, P.E.
- Published
- 2007
- Full Text
- View/download PDF
5. Karaikal Port Private Limited
- Author
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Nambissan, S., primary, Ramakrishnan, S., additional, Yegneswaran, S., additional, and Raghuram, G., additional
- Published
- 2014
- Full Text
- View/download PDF
6. Relocating the active site of activated protein C eliminates the need for its protein S cofactor. A fluorescence resonance energy transfer study.
- Author
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Yegneswaran, S, Smirnov, M D, Safa, O, Esmon, N L, Esmon, C T, and Johnson, A E
- Abstract
The effect of replacing the gamma-carboxyglutamic acid domain of activated protein C (APC) with that of prothrombin on the topography of the membrane-bound enzyme was examined using fluorescence resonance energy transfer. The average distance of closest approach (assuming kappa2 = 2/3) between a fluorescein in the active site of the chimera and octadecylrhodamine at the membrane surface was 89 A, compared with 94 A for wild-type APC. The gamma-carboxyglutamic acid domain substitution therefore lowered and/or reoriented the active site, repositioning it close to the 84 A observed for the APC. protein S complex. Protein S enhances wild-type APC cleavage of factor Va at Arg306, but the inactivation rate of factor Va Leiden by the chimera alone is essentially equal to that by wild-type APC plus protein S. These data suggest that the activities of the chimera and of the APC.protein S complex are equivalent because the active site of the chimeric protein is already positioned near the optimal location above the membrane surface to cleave Arg306. Thus, one mechanism by which protein S regulates APC activity is by relocating its active site to the proper position above the membrane surface to optimize factor Va cleavage.
- Published
- 1999
7. Protein S alters the active site location of activated protein C above the membrane surface. A fluorescence resonance energy transfer study of topography.
- Author
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Yegneswaran, S, Wood, G M, Esmon, C T, and Johnson, A E
- Abstract
The location of the active site of membrane-bound activated protein C (APC) relative to the phospholipid surface was determined both in the presence and absence of its cofactor, protein S, using fluorescence resonance energy transfer (FRET). APC was chemically modified to create the FRET donor species, Fl-FPR-APC, with a fluorescein dye (Fl) covalently attached to the active site via a D-Phe-Pro-Arg (FPR) tether and located in the active site near S4. FRET was observed when Fl-FPR-APC was titrated in the presence of Ca2+ ions with phosphatidylcholine/phosphatidylserine (4:1) vesicles containing the FRET acceptor, octadecylrhodamine (OR). Assuming a random orientation of transition dipoles (kappa2 = 2/3), the average distance of closest approach between the fluorescein in the active site of the membrane-bound APC and the OR at the membrane surface is 94 A. The same calcium-dependent distance was obtained for both small and large unilamellar vesicles and for vesicles that contained phosphatidylethanolamine. The active site of membrane-bound APC is therefore located far above the phospholipid surface. Upon addition of protein S, the efficiency of Fl-FPR-APC to OR energy transfer increased due to a protein S-dependent rotational and/or translational movement of the APC protease domain relative to the surface. If this movement were solely translational, then the average height of the fluorescein in the membrane-bound APC.protein S complex would be 84 A above the surface. The extent of Fl-FPR-APC to OR energy transfer was unaltered by the addition of thrombin-inactivated protein S. The protein S effect was also specific for APC, since the addition of protein S to similarly-labeled derivatives of factor Xa, factor IXa, or factor VIIa did not alter the locations of their active sites. This direct measurement demonstrates that the binding of the protein S cofactor to its cognate enzyme elicits a relocation of the active site of APC relative to the membrane surface and thereby provides a structural explanation for the recently observed protein S-dependent change in the site of factor Va cleavage by APC.
- Published
- 1997
8. Evaluation of amotosalen and UVA pathogen-reduced apheresis platelets after 7-day storage.
- Author
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Cancelas JA, Genthe JR, Stolla M, Rugg N, Bailey SL, Nestheide S, Shaz B, Mack S, Schroeder K, Anani W, Szczepiorkowski ZM, Dumont LJ, Yegneswaran S, Corash L, Mufti N, Benjamin RJ, and Erickson AC
- Subjects
- Blood Platelets, Blood Preservation, Humans, Platelet Transfusion, Plateletpheresis, Thrombin pharmacology, Ultraviolet Rays, Furocoumarins pharmacology, Thrombocytopenia, Transfusion Reaction
- Abstract
Background: Amotosalen/UVA pathogen-reduced platelet components (PRPCs) with storage up to 7 days are standard of care in France, Switzerland, and Austria. PRPCs provide effective hemostasis with reduced risk of transfusion-transmitted infections and transfusion-associated graft versus host disease, reduced wastage and improved availability compared with 5-day-stored PCs. This study evaluated the potency of 7-day PRPCs by in vitro characterization and in vivo pharmacokinetic analysis of autologous PCs., Study Design and Methods: The in vitro characteristics of 7-day-stored apheresis PRPCs suspended in 100% plasma or 65% platelet additive solution (PAS-3)/35% plasma, thrombin generation, and in vivo radiolabeled post-transfusion recovery and survival of 7-day-stored PRPCs suspended in 100% plasma were compared with either 7-day-stored or fresh autologous conventional platelets., Results: PRPCs after 7 days of storage maintained pH, platelet dose, in vitro physiologic characteristics, and thrombin generation when compared to conventional 7-day PCs. In vivo, the mean post-transfusion survival was 151.4 ± 20.1 h for 7-day PRPCs in 100% plasma (Test) versus 209.6 ± 13.9 h for the fresh autologous platelets (Control), (T-ΔC: 72.3 ± 8.8%: 95% confidence interval [CI]: 68.5, 76.1) and mean 24-h post-transfusion recovery 37.6 ± 8.4% for Test versus 56.8 ± 9.2% for Control (T-ΔC: 66.2 ± 11.2%; 95% CI: 61.3, 71.1)., Discussion: PRPCs collected in both 100% plasma as well as 65% PAS-3/35% plasma and stored for 7 days retained in vitro physiologic characteristics. PRPCs stored in 100% plasma for 7 days retained in vivo survival. Lower in vivo post-radiolabeled autologous platelet recovery is consistent with reported reduced count increments for allogenic transfusion., (© 2022 Cerus Corporation. Transfusion published by Wiley Periodicals LLC on behalf of AABB.)
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- 2022
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9. Targeted inhibition of activated protein C by a non-active-site inhibitory antibody to treat hemophilia.
- Author
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Zhao XY, Wilmen A, Wang D, Wang X, Bauzon M, Kim JY, Linden L, Li L, Egner U, Marquardt T, Moosmayer D, Tebbe J, Glück JM, Ellinger P, McLean K, Yuan S, Yegneswaran S, Jiang X, Evans V, Gu JM, Schneider D, Zhu Y, Xu Y, Mallari C, Hesslein A, Wang Y, Schmidt N, Gutberlet K, Ruehl-Fehlert C, Freyberger A, Hermiston T, Patel C, Sim D, Mosnier LO, and Laux V
- Subjects
- Animals, Antibodies, Monoclonal classification, Antibodies, Monoclonal immunology, Bleeding Time, Cell Membrane Permeability drug effects, Cells, Cultured, Crystallography, X-Ray, Hemophilia A blood, Hemorrhage prevention & control, Human Umbilical Vein Endothelial Cells drug effects, Human Umbilical Vein Endothelial Cells metabolism, Human Umbilical Vein Endothelial Cells physiology, Humans, Immunoglobulin Fab Fragments metabolism, Macaca fascicularis, Male, Protein C chemistry, Protein C immunology, Protein C metabolism, Protein C Inhibitor blood, Protein C Inhibitor pharmacokinetics, Antibodies, Monoclonal pharmacology, Hemophilia A prevention & control, Immunoglobulin Fab Fragments immunology, Protein C antagonists & inhibitors, Protein C Inhibitor pharmacology
- Abstract
Activated protein C (APC) is a plasma serine protease with antithrombotic and cytoprotective functions. Based on the hypothesis that specific inhibition of APC's anticoagulant but not its cytoprotective activity can be beneficial for hemophilia therapy, 2 types of inhibitory monoclonal antibodies (mAbs) are tested: A type I active-site binding mAb and a type II mAb binding to an exosite on APC (required for anticoagulant activity) as shown by X-ray crystallography. Both mAbs increase thrombin generation and promote plasma clotting. Type I blocks all APC activities, whereas type II preserves APC's cytoprotective function. In normal monkeys, type I causes many adverse effects including animal death. In contrast, type II is well-tolerated in normal monkeys and shows both acute and prophylactic dose-dependent efficacy in hemophilic monkeys. Our data show that the type II mAb can specifically inhibit APC's anticoagulant function without compromising its cytoprotective function and offers superior therapeutic opportunities for hemophilia.
- Published
- 2020
- Full Text
- View/download PDF
10. Acylcarnitines are anticoagulants that inhibit factor Xa and are reduced in venous thrombosis, based on metabolomics data.
- Author
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Deguchi H, Banerjee Y, Trauger S, Siuzdak G, Kalisiak E, Fernández JA, Hoang L, Tran M, Yegneswaran S, Elias DJ, and Griffin JH
- Subjects
- Adult, Aged, Aged, 80 and over, Anticoagulants therapeutic use, Carnitine blood, Carnitine chemistry, Carnitine metabolism, Case-Control Studies, Factor Xa chemistry, Factor Xa Inhibitors blood, Factor Xa Inhibitors chemistry, Female, Humans, Male, Metabolomics, Middle Aged, Protein Binding, Protein Structure, Tertiary, Risk Factors, Venous Thrombosis blood, Venous Thrombosis drug therapy, Venous Thrombosis etiology, Warfarin therapeutic use, Carnitine analogs & derivatives, Factor Xa metabolism, Factor Xa Inhibitors metabolism, Venous Thrombosis metabolism
- Abstract
In many patients with deep vein thrombosis and pulmonary embolism (venous thromboembolism, VTE), biomarkers or genetic risk factors have not been identified. To discover novel plasma metabolites associated with VTE risk, we employed liquid chromatography-mass spectrometry-based untargeted metabolomics, which do not target any specific metabolites. Using the Scripps Venous Thrombosis Registry population for a case-control study, we discovered that 10:1 and 16:1 acylcarnitines were low in plasmas of the VTE patient group compared with matched controls, respectively. Data from targeted metabolomics studies showed that several long-chain acylcarnitines (10:1, 12:0, 12:2, 18:1, and 18:2) were lower in the VTE group. Clotting assays were used to evaluate a causal relationship for low acylcarnitines in patients with VTE. Various acylcarnitines inhibited factor Xa-initiated clotting. Inhibition of factor Xa by acylcarnitines was greater for longer acyl chains. Mechanistic studies showed that 16:0 acylcarnitine had anticoagulant activity in the absence of factor Va or phospholipids. Surface plasmon resonance investigations revealed that 16:0 acylcarnitine was bound to factor Xa and that binding did not require the γ-carboxy glutamic acid domain. In summary, our study identified low plasma levels of acylcarnitines in patients with VTE and showed that acylcarnitines have anticoagulant activity related to an ability to bind and inhibit factor Xa., (© 2015 by The American Society of Hematology.)
- Published
- 2015
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11. Lyso-Sulfatide Binds Factor Xa and Inhibits Thrombin Generation by the Prothrombinase Complex.
- Author
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Yegneswaran S, Banerjee Y, Fernández JA, Deguchi H, and Griffin JH
- Subjects
- Blood Coagulation drug effects, Factor Va metabolism, Factor Xa chemistry, Factor Xa pharmacology, Humans, Multiprotein Complexes metabolism, Phospholipids metabolism, Protein Binding, Protein Interaction Domains and Motifs, Prothrombin antagonists & inhibitors, Psychosine chemistry, Psychosine metabolism, Psychosine pharmacology, Thrombin antagonists & inhibitors, Factor V metabolism, Factor Xa metabolism, Psychosine analogs & derivatives, Thrombin biosynthesis
- Abstract
Blood coagulation reactions are strongly influenced by phospholipids, but little is known about the influence of sphingolipids on coagulation mechanisms. Lysosulfatide (lyso-SF) (sulfogalactosyl sphingosine) prolonged factor Xa (fXa) 1-stage plasma clotting assays, showing it had robust anticoagulant activity. In studies using purified clotting factors, lyso-SF inhibited >90% of prothrombin (II) activation for reaction mixtures containing fXa/factor Va (fVa)/II, and also inhibited II activation generation by fXa/ phospholipids and by Gla-domainless-fXa/fVa/phospholipids. When lyso-SF analogs were tested, results showed that N-acetyl-sulfatide was not anticoagulant, implying that the free amine group was essential for the anticoagulant effects of lyso-SF. Lyso-SF did not inhibit fXa enzymatic hydrolysis of small peptide substrates, showing it did not directly inhibit the fXa activity. In surface plasmon resonance studies, lyso-SF bound to immobilized inactivated fXa as well as inactivated Gla-domainless-fXa. Confirming this lyso-SF:fXa interaction, fluorescence studies showed that fluorescently-labeled-fXa in solution bound to lyso-SF. Thus, lyso-SF is an anticoagulant lipid that inhibits fXa when this enzyme is bound to either phospholipids or to fVa. Mechanisms for inhibition of procoagulant activity are likely to involve lyso-SF binding to fXa domain(s) that are distinct from the fXa Gla domain. This suggests that certain sphingolipids, including lyso-SF and some of its analogs, may down-regulate fXa activity without inhibiting the enzyme's active site or binding to the fXa Gla domain.
- Published
- 2015
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12. Infrared fluorescence for vascular barrier breach in vivo--a novel method for quantitation of albumin efflux.
- Author
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von Drygalski A, Furlan-Freguia C, Mosnier LO, Yegneswaran S, Ruf W, and Griffin JH
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- Animals, Coloring Agents administration & dosage, Coloring Agents metabolism, Disease Models, Animal, Evans Blue administration & dosage, Female, Hemoglobins metabolism, Inflammation blood, Inflammation etiology, Infrared Rays, Lipopolysaccharides toxicity, Male, Mice, Mice, Inbred C57BL, Mice, Knockout, Optical Imaging, Organ Specificity, Capillary Permeability physiology, Evans Blue metabolism, Serum Albumin metabolism
- Abstract
Vascular hyperpermeability contributes to morbidity in inflammation. Current methodologies for in vivo assessment of permeability based on extravasation of Evans Blue (EB)-bound albumin are cumbersome and often lack sensitivity. We developed a novel infrared fluorescence (IRF) methodology for measurement of EB-albumin extravasation to quantify vascular permeability in murine models. Vascular permeability induced by endotoxaemia was examined for all solid organs, brain, skin and peritoneum by IRF and the traditional absorbance-based measurement of EB in tissue extracts. Organ IRF increased linearly with increasing concentrations of intravenous EB (2.5-25 mg/kg). Tissue IRF was more sensitive for EB accumulation compared to the absorbance-based method. Accordingly, differences in vascular permeability and organ EB accumulation between lipopolysaccharide-treated and saline-treated mice were often significant when analysed by IRF-based detection but not by absorbance-based detection. EB was detected in all 353 organs analysed with IRF but only in 67% (239/353) of organs analysed by absorbance-based methodology, demonstrating improved sensitivity of EB detection in organs with IRF. In contrast, EB in plasma after EB administration was readily measured by both methods with high correlation between the two methods (n=116, r2=0.86). Quantitation of organ-specific EB-IRF differences due to endotoxin was optimal when IRF was compared between mice matched for weight, gender, and age, and with appropriate corrections for organ weight and EB plasma concentrations. Notably, EB-IRF methodology leaves organs intact for subsequent histopathology. In summary, EB-IRF is a novel, highly sensitive, rapid, and convenient method for the relative quantification of EB in intact organs of treatment versus control mice.
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- 2012
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13. Bisaryl hydrazones as exchangeable biocompatible linkers.
- Author
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Dirksen A, Yegneswaran S, and Dawson PE
- Subjects
- Biocompatible Materials chemistry, Biocompatible Materials metabolism, Biotin chemistry, Biotin metabolism, Immobilized Proteins chemistry, Immobilized Proteins isolation & purification, Serum Albumin chemistry, Serum Albumin isolation & purification, Streptavidin chemistry, Streptavidin metabolism, Hydrazones chemistry
- Published
- 2010
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14. Prothrombin amino terminal region helps protect coagulation factor Va from proteolytic inactivation by activated protein C.
- Author
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Yegneswaran S, Nguyen PM, Gale AJ, and Griffin JH
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- Animals, Binding, Competitive, Enzyme Precursors metabolism, Factor VIIIa metabolism, Factor Va genetics, Factor Xa metabolism, Humans, Kringles, Mutation, Peptide Fragments metabolism, Phospholipids metabolism, Protein Binding, Protein Structure, Tertiary, Recombinant Proteins metabolism, Thrombin metabolism, Time Factors, Blood Coagulation, Factor Va metabolism, Protein C metabolism, Prothrombin metabolism
- Abstract
The hypothesis that prothrombin (FII) protects coagulation factor Va (FVa) from proteolytic inactivation by activated protein C (APC) was tested using purified proteins. FII dose-dependently protected FVa from APC proteolysis under conditions where competition of proteins for binding to negatively-charged phospholipid surface was not relevant (i.e. either at high phospholipid vesicle concentrations or using soluble dicaproylphosphatidylserine at levels below its critical micellar concentration). Cleavages in FVa at both Arg(506) and Arg(306) by APC were inhibited by FII. FII did not alter the amidolytic activity of APC towards chromogenic oligopeptide substrates or inhibit FVIIIa inactivation by APC, implying that the FII-mediated protection of FVa from APC proteolysis was due to the ability of FII to inhibit protein-protein interactions between FVa and APC. FII also protected FVa from inactivation by Gla-domainless APC, ruling out a role for the APC Gla domain for these observations. To identify domains of FII responsible for the observed phenomenon, various forms or fragments of FII were employed. Biotin-Phe-ProArg-CMK-inhibited meizothrombin and fII-fragment 1*2 protected FVa from proteolysis by APC. In contrast, no significant protection of FVa from APC cleavage was observed for Gladomainless-FII, prethrombin-1, prethrombin-2, FII fragment 1 or active site inhibited-thrombin (DEGR-thrombin). Overall, these data demonstrate that the Gla domain of FII linked to kringle 1 and 2 is necessary for the ability of FII to protect FVa from APC cleavage and support the general concept that assembly of the FII activation complex (FXa*FVa*FII*lipid surface) protects FVa from APC inactivation so that the procoagulant, thrombin generating pathway can act unhindered by APC. Only following FII activation and dissociation of the FII Gla domain fragments from the FII-ase complex, can APC inactivate FVa and down-regulate thrombin generation.
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- 2009
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15. The thrombin-sensitive region of protein S mediates phospholipid-dependent interaction with factor Xa.
- Author
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Yegneswaran S, Hackeng TM, Dawson PE, and Griffin JH
- Subjects
- Factor Xa metabolism, Fluorescent Dyes, Humans, Phosphatidylcholines metabolism, Phosphatidylserines metabolism, Protein Binding physiology, Protein S metabolism, Protein Structure, Tertiary physiology, Thrombin metabolism, Factor Xa chemistry, Membranes, Artificial, Phosphatidylcholines chemistry, Phosphatidylserines chemistry, Protein S chemistry, Thrombin chemistry
- Abstract
To test the hypothesis that factor Xa (fXa) interacts with protein S, fXa was labeled active-site specifically with a dansyl (D) dye via a Glu-Gly-Arg (EGR) tether to yield DEGR-fXa(i). When protein S was added to phosphatidylcholine/phosphatidylserine (PC/PS, 4:1) vesicle-bound DEGR-fXa(i), the anisotropy of the dansyl moiety was altered from 0.219 +/- 0.002 to 0.245 +/- 0.003. This change in dansyl anisotropy was not observed when DEGR-Xa(i) was titrated with protein S in the absence of PC/PS vesicles, or in the presence of 100% PC vesicles, or when PC/PS vesicle-bound DEGR-fXa(i) was titrated with thrombin-cleaved protein S. The protein S-dependent dansyl fluorescence change was specific for fXa because it was not observed for two homologous and similarly labeled DEGR-fIXa(i) and DEGR-fVIIa(i). Furthermore, protein S specifically and saturably altered the fluorescence anisotropy of PC/PS-bound active site-labeled LWB-FPR-fXa(i) (Kd = 33 nm) and was photocross-linked to PC/PS-bound LWB-FPR-fXa(i) analog, independently confirming the above results. Chemically synthesized microprotein S, comprising residues 1-116 of protein S and including the gamma-carboxyglutamic-rich domain, the thrombin-sensitive region (TSR), and the first epidermal growth factor-like domain (EGF1) of protein S, altered the anisotropy of PC/PS-bound DEGR-fXa(i) from 0.219 to 0.242, similar to the effect of the protein S titration (Kd = 303 nm), suggesting that microprotein S binds to DEGR-fXa(i). To identify individual protein S domain(s) that binds DEGR-fXa(i), the EGF1 and TSR domains were chemically synthesized and studied. The TSR altered the anisotropy of DEGR-fXa(i) by approximately 16% (Kd = 3.9 microm), but the EGF1 domain had no effect on the signal. In controls, the TSR domain did not alter the anisotropy of DEGR-fIXa(i) and DEGR-fVIIa(i), respectively. These data demonstrate that membrane-bound fXa binding to protein S involves the TSR of protein S.
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- 2008
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16. FRET studies with factor X mutants provide insight into the topography of the membrane-bound factor X/Xa.
- Author
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Qureshi SH, Yang L, Yegneswaran S, and Rezaie AR
- Subjects
- Amino Acid Sequence, Base Sequence, Binding Sites genetics, Cell Line, Cell Membrane genetics, Enzyme Activation genetics, Factor Xa chemistry, Factor Xa isolation & purification, Humans, Membrane Proteins chemistry, Membrane Proteins isolation & purification, Protein Binding genetics, Protein Structure, Tertiary genetics, Cell Membrane chemistry, Cell Membrane metabolism, Factor Xa genetics, Factor Xa metabolism, Fluorescence Resonance Energy Transfer, Membrane Proteins genetics, Membrane Proteins metabolism, Sequence Deletion genetics
- Abstract
FRET (fluorescence resonance energy transfer) studies have shown that the vitamin K-dependent coagulation proteases bind to membrane surfaces perpendicularly, positioning their active sites above the membrane surfaces. To investigate whether EGF (epidermal growth factor) domains of these proteases play a spacer function in this model of the membrane interaction, we used FRET to measure the distance between the donor fluorescein dye in the active sites of Fl-FPR (fluorescein-D-Phe-Pro-Arg-chloromethane)-inhibited fXa (activated Factor Xa) and its N-terminal EGF deletion mutant (fXa-desEGF1), and the acceptor OR (octadecylrhodamine) dye incorporated into phospholipid vesicles composed of 80% phosphatidylcholine and 20% phosphatidylserine. The average distance of closest approach (L) between fluorescein in the active site and OR at the vesicle surface was determined to be 56+/-1 A (1 A=0.1 nm) and 63+/-1 A for fXa-desEGF1 compared with 72+/-2 A and 75+/-1 A for fXa, in the absence and presence of fVa (activated Factor V) respectively, assuming kappa2=2/3. In comparison, an L value of 95+/-6 A was obtained for a S195C mutant of fXa in the absence of fVa in which fluorescein was attached directly to Cys(195) of fXa. These results suggest that (i) EGF1 plays a spacer function in holding the active site of fXa above the membrane surface, (ii) the average distance between fluorescein attached to Fl-FPR in the active site of fXa and OR at the vesicle surface may not reflect the actual distance of the active-site residue relative to the membrane surface, and (iii) fVa alters the orientation and/or the height of residue 195 above the membrane surface.
- Published
- 2007
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17. Factor Va residues 311-325 represent an activated protein C binding region.
- Author
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Yegneswaran S, Kojima Y, Nguyen PM, Gale AJ, Heeb MJ, and Griffin JH
- Subjects
- Amino Acid Substitution, Binding Sites genetics, Enzyme Activation, Factor Va genetics, Factor Xa genetics, Humans, Mutation, Missense, Peptides genetics, Protein C genetics, Prothrombin chemistry, Prothrombin genetics, Recombinant Proteins chemistry, Recombinant Proteins genetics, Factor Va chemistry, Factor Xa chemistry, Peptides chemistry, Protein C chemistry
- Abstract
Activated protein C (APC) inactivates factor Va (fVa) by proteolytically cleaving fVa heavy chain at Arg(506), Arg(306), and Arg(679). Factor Xa (fXa) protects fVa from inactivation by APC. To test the hypothesis that fXa and APC share overlapping fVa binding sites, 15 amino acid-overlapping peptides representing the heavy chain (residues 1-709) of fVa were screened for inhibition of fVa inactivation by APC. As reported, VP311-325, a peptide comprising residues 311-325 in fVa, dose-dependently and potently inhibited fVa-dependent prothrombin activation by fXa in the absence of APC. This peptide also inhibited the inactivation of fVa by APC, suggesting that this region of fVa interacts with APC. The peptide inhibited the APC-dependent cleavage of both Arg(506) and Arg(306) because inhibition was observed with plasma-derived fVa and recombinant R506Q and RR306/679QQ fVa. VP311-325 altered the fluorescence emission of dansyl-active site-labeled APC(i) but not a dansyl-active site-labeled thrombin control, showing that the peptide binds to APC(i). This peptide also inhibited the resonance energy transfer between membrane-bound fluorescein-labeled fVa (donor) and rhodamine-active site-labeled S360C-APC (acceptor). These data suggest that peptide VP311-325 represents both an APC and fXa binding region in fVa.
- Published
- 2007
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18. Characterization of a factor Xa binding site on factor Va near the Arg-506 activated protein C cleavage site.
- Author
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Gale AJ, Yegneswaran S, Xu X, Pellequer JL, and Griffin JH
- Subjects
- Amino Acid Substitution, Animals, Arginine, Binding Sites, Cattle, Crystallography, X-Ray, Factor Va chemistry, Factor Va genetics, Factor Xa chemistry, Humans, Mutagenesis, Site-Directed, Peptide Fragments metabolism, Prothrombin metabolism, Recombinant Proteins chemistry, Recombinant Proteins metabolism, Sequence Deletion, Thromboplastin metabolism, Factor Va metabolism, Factor Xa metabolism, Protein C metabolism
- Abstract
Prothrombin is proteolytically activated by the prothrombinase complex comprising the serine protease Factor (F) Xa complexed with its cofactor, FVa. Based on inhibition of the prothrombinase complex by synthetic peptides, FVa residues 493-506 were proposed as a FXa binding site. FVa is homologous to FVIIIa, the cofactor for the FIXa protease, in the FX-activating complex, and FVIIIa residues 555-561 (homologous to FVa residues 499-506) are recognized as a FIXa binding sequence. To test the hypothesis that FVa residues 499-505 contribute to FXa binding, we created the FVa loop swap mutant (designated 499-505(VIII) FV) with residues 499-505 replaced by residues 555-561 of FVIIIa, which differ at five of seven positions. Based on kinetic measurements and spectroscopic titrations, this FVa loop swap mutant had significantly reduced affinity for FXa. The fully formed prothrombinase complex containing this FVa mutant had fairly normal kinetic parameters (k(cat) and K(m)) for cleavage of prothrombin at Arg-320. However, small changes in both Arg-320 and Arg-271 cleavage rates result together in a moderate change in the pathway of prothrombin activation. Although residues 499-505 directly precede the Arg-506 cleavage site for activated protein C (APC), the 499-505(VIII) FVa mutant was inactivated entirely normally by APC. These results suggest that this A2 domain sequence of the FVa and FVIIIa cofactors evolved to have different specificity for binding FXa and FIXa while retaining compatibility as substrate for APC. In an updated three-dimensional model for the FVa structure, residues 499-505, along with Arg-506, Arg-306, and other previously suggested FXa binding sequences, delineate a continuous surface on the A2 domain that is strongly implicated as an extended FXa binding surface in the prothrombinase complex.
- Published
- 2007
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19. Raising the active site of factor VIIa above the membrane surface reduces its procoagulant activity but not factor VII autoactivation.
- Author
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Waters EK, Yegneswaran S, and Morrissey JH
- Subjects
- Animals, Binding Sites, Cell Membrane chemistry, Cell Membrane metabolism, Factor VIIa genetics, Factor X metabolism, Fluorescence Resonance Energy Transfer, Fluorescent Dyes chemistry, Fluorescent Dyes metabolism, Humans, P-Selectin chemistry, P-Selectin genetics, P-Selectin metabolism, Protein Binding, Protein Conformation, Recombinant Fusion Proteins genetics, Blood Coagulation physiology, Factor VII metabolism, Factor VIIa chemistry, Factor VIIa metabolism, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Thromboplastin chemistry, Thromboplastin genetics, Thromboplastin metabolism
- Abstract
Tissue factor, the physiologic trigger of blood clotting, is the membrane-anchored protein cofactor for the plasma serine protease, factor VIIa. Tissue factor is hypothesized to position and align the active site of factor VIIa relative to the membrane surface for optimum proteolytic attack on the scissile bonds of membrane-bound protein substrates such as factor X. We tested this hypothesis by raising the factor VIIa binding site above the membrane surface by creating chimeras containing the tissue factor ectodomain linked to varying portions of the membrane-anchored protein, P-selectin. The tissue factor/P-selectin chimeras bound factor VIIa with high affinity and supported full allosteric activation of factor VIIa toward tripeptidyl-amide substrates. That the active site of factor VIIa was raised above the membrane surface when bound to tissue factor/P-selectin chimeras was confirmed using resonance energy transfer techniques in which appropriate fluorescent dyes were placed in the active site of factor VIIa and at the membrane surface. The chimeras were deficient in supporting factor X activation by factor VIIa due to decreased k(cat). The chimeras were also markedly deficient in clotting plasma, although incubating factor VII or VIIa with the chimeras prior to the addition of plasma restored much of their procoagulant activity. Interestingly, all chimeras fully supported tissue factor-dependent factor VII autoactivation. These studies indicate that proper positioning of the factor VII/VIIa binding site on tissue factor above the membrane surface is important for efficient rates of activation of factor X by this membrane-bound enzyme/cofactor complex.
- Published
- 2006
- Full Text
- View/download PDF
20. Prothrombin residues 473-487 contribute to factor Va binding in the prothrombinase complex.
- Author
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Yegneswaran S, Mesters RM, Fernández JA, and Griffin JH
- Subjects
- Animals, Anisotropy, Arginine chemistry, Binding Sites, Blood Coagulation, Blotting, Western, Chymotrypsin chemistry, Dose-Response Relationship, Drug, Electrophoresis, Polyacrylamide Gel, Endopeptidases metabolism, Enzyme Precursors chemistry, Enzyme-Linked Immunosorbent Assay, Factor Xa chemistry, Fibrinogen chemistry, Fluorescein pharmacology, Humans, Kinetics, Models, Molecular, Partial Thromboplastin Time, Peptides chemistry, Protein Binding, Spectrometry, Fluorescence, Spectrophotometry, Thrombin chemistry, Viper Venoms pharmacology, Factor Va chemistry, Prothrombin chemistry, Prothrombin genetics, Thromboplastin metabolism
- Abstract
To identify sequences in prothrombin (fII) involved in prothrombinase complex (fXa.fVa.fII.phospholipids) assembly, synthetic peptides based on fII sequences were prepared and screened for their ability to inhibit factor Xa (fXa)-induced clotting of normal plasma. The fII peptide (PT473-487, homologous to chymotrypsin residues 149D-163) potently inhibited plasma clotting assays and prothrombinase activity, with 50% inhibition of 12 and 10 microm peptide, respectively. Prothrombinase inhibition by PT473-487 was factor Va (fVa)-dependent and sequence-specific, because the peptide did not inhibit fII activation in the absence of fVa, and a scrambled sequence peptide, PT473-487SCR, was not inhibitory. Peptide PT473-487 did not inhibit the amidolytic activities of fXa and thrombin, suggesting that the peptide did not alter the integrity of their active sites. To determine whether PT473-487 interacted directly with fVa, fluorescein-labeled fVa (Fl-fVa) was prepared. When PT473-487 was titrated into samples containing phospholipid-bound Fl-fVa, the peptide increased fluorescein anisotropy (EC(50) at 3 microm peptide), whereas the control peptide PT473-487SCR did not alter the anisotropy, suggesting a direct binding interaction between PT473-487 and Fl-fVa. These functional and spectroscopic data suggest that fII residues 473-487 provide fVa-binding sites and mediate interactions between fVa and fII in the prothrombinase complex.
- Published
- 2004
- Full Text
- View/download PDF
21. Activated protein C variants with normal cytoprotective but reduced anticoagulant activity.
- Author
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Mosnier LO, Gale AJ, Yegneswaran S, and Griffin JH
- Subjects
- Apoptosis, Cell Survival, Endothelial Cells cytology, Endothelial Cells metabolism, Endothelins metabolism, Humans, Mutation genetics, Receptor, PAR-1 metabolism, Recombinant Proteins genetics, Recombinant Proteins metabolism, Anticoagulants metabolism, Blood Coagulation, Cytoprotection, Genetic Variation genetics, Protein C genetics, Protein C metabolism
- Abstract
Recombinant activated protein C (APC), a well-defined anticoagulant enzyme, reduced mortality in severe sepsis patients in a phase 3 trial. However, 2 potent anticoagulants, antithrombin III and recombinant tissue factor pathway inhibitor, failed to do so, implying the physiologic relevance of APC's less well-defined anti-inflammatory and antiapoptotic activities. Recombinant APC therapy conveys an increased risk of serious bleeding complications due to APC anticoagulant activity. To generate recombinant APC variants with reduced risk of bleeding due to reduced anticoagulant activity, we dissected APC's anticoagulant activity from its cytoprotective activity by site-directed mutagenesis. Using staurosporine-induced endothelial cell apoptosis assays, we show here that Ala mutations (RR229/230AA and KKK191_ 193AAA) in 2 APC surface loops that severely reduce anticoagulant activity result in 2 APC variants that retain normal antiapoptotic activity that requires protease activated receptor-1 and endothelial cell protein C receptor. Thus, it is possible to reduce anticoagulant activity while preserving antiapoptotic activity of recombinant APC variants. We suggest that therapeutic use of such APC variants may reduce serious bleeding risks while providing the beneficial effects of APC acting directly on cells.
- Published
- 2004
- Full Text
- View/download PDF
22. Sphingolipids as bioactive regulators of thrombin generation.
- Author
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Deguchi H, Yegneswaran S, and Griffin JH
- Subjects
- Anticoagulants pharmacology, Binding Sites, Blood Platelets metabolism, Carbon chemistry, Dose-Response Relationship, Drug, Down-Regulation, Factor Va chemistry, Factor Xa chemistry, Humans, Inhibitory Concentration 50, Lipid Metabolism, Lipids pharmacology, Micelles, Phosphorylcholine metabolism, Protein Binding, Protein Structure, Tertiary, Prothrombin metabolism, Psychosine analogs & derivatives, Sphingosine metabolism, Sphingosine pharmacology, Thrombin metabolism, Gene Expression Regulation, Phosphorylcholine analogs & derivatives, Sphingolipids metabolism, Sphingosine analogs & derivatives, Thrombin biosynthesis
- Abstract
Sphingolipids contribute to modulation of two opposing cell processes, cell growth and apoptotic cell death; ceramide and sphingosine promote the latter and sphingosine-1-phosphate triggers the former. Thrombin, a pro-inflammatory protease that is regulated by the blood coagulation cascade, exerts similar effects depending on cell type. Here we report a new mechanism for cross-talk between sphingolipid metabolism and thrombin generation. Sphingosine and sphinganine, but not ceramide or sphingosine-1-phosphate, down-regulated thrombin generation on platelet surfaces (IC(50) = 2.4 and 1.4 microm for sphingosine and sphinganine, respectively) as well as in whole plasma clotting assays. Thrombin generation was also inhibited by glucosylsphingosine, lysosphingomyelin, phytosphingosine, and primary alkylamines with >10 carbons. Acylation of the amino group ablated anticoagulant activities. Factor Va was required for the anticoagulant property of sphingosine because prothrombin activation was inhibited by sphingosine, sphinganine, and stearylamine in the presence but not in the absence of factor Va. Sphingosine did not inhibit thrombin generation when Gla-domainless factor Xa was used in prothrombinase assays, whereas sphingosine inhibited activation of Gla-domainless prothrombin by factor Xa/factor Va in the absence of phospholipids (IC(50) = 0.49 microm). Fluorescence spectroscopy studies showed that sphingosine binds to fluorescein-labeled factor Xa and that this interaction required the Gla domain. These results imply that sphingosine disrupts interactions between factor Va and the Gla domain of factor Xa in the prothrombinase complex. Thus, certain sphingolipids may be bioactive lipid mediators of thrombin generation such that certain sphingolipid metabolites may modulate proteases that affect cell growth and death, blood coagulation, and inflammation.
- Published
- 2004
- Full Text
- View/download PDF
23. Identification of distinct sequences in human blood coagulation factor Xa and prothrombin essential for substrate and cofactor recognition in the prothrombinase complex.
- Author
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Yegneswaran S, Mesters RM, and Griffin JH
- Subjects
- Amino Acid Sequence, Chymotrypsin chemistry, Dose-Response Relationship, Drug, Factor Va chemistry, Fibrinogen chemistry, Humans, Kinetics, Models, Molecular, Molecular Sequence Data, Peptides chemistry, Protein Binding, Protein C chemistry, Protein Structure, Tertiary, Prothrombin chemistry, Spectrophotometry, Factor Xa chemistry, Thromboplastin chemistry
- Abstract
To identify amino acid sequences in factor Xa (fXa) and prothrombin (fII) that may be involved in prothrombinase complex (fXa.factor Va.fII.phospholipids) assembly, synthetic peptides based on fXa and fII sequences were prepared and screened for their ability to inhibit fXa-induced clotting of normal plasma. One fII peptide (PT557-571 homologous to chymotrypsin (CHT) residues 225-239) and two fXa peptides (X404-418, CHT231-244, and X415-429, CHT241-252C) potently inhibited plasma clotting and prothrombinase activity with 50% inhibition between 41 and 115 microM peptide. Inhibition of prothrombinase by PT557-571 and X415-429 was fVa-independent, whereas the inhibition by X404-418 was fVa-dependent. X404-418 inhibited the binding of fVa to fluorescein-labeled, inhibited fXai in the presence of phosphatidylcholine/phosphatidylserine vesicles, whereas X415-429 inhibited binding of fII to phospholipid-bound fluorescein-labeled, inhibited fXai. PT557-571 altered the fluorescence emission of fluorescein-labeled fXai, showing that PT557-571 binds to fXai. These data suggest that residues 404-418 in fXa provide fVa binding sites, whereas residues 557-571 in fII and 415-429 in fXa mediate interactions between fXa and fII in the prothrombinase complex.
- Published
- 2003
- Full Text
- View/download PDF
24. Glucosylceramide, a neutral glycosphingolipid anticoagulant cofactor, enhances the interaction of human- and bovine-activated protein C with negatively charged phospholipid vesicles.
- Author
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Yegneswaran S, Deguchi H, and Griffin JH
- Subjects
- Animals, Anticoagulants pharmacology, Binding Sites, Cattle, Fluorescence Resonance Energy Transfer, Humans, Liposomes chemistry, Liposomes metabolism, Phospholipids chemistry, Phospholipids metabolism, Protein Binding drug effects, Prothrombin Time, Glucosylceramides pharmacology, Phosphatidylserines metabolism, Protein C metabolism
- Abstract
The effect of glucosylceramide (GlcCer) on activated protein C (APC)-phospholipid interactions was examined using fluorescence resonance energy transfer. Human APC, labeled with either fluorescein (Fl-APC) or dansyl (DEGR-APC) donor, bound to phosphatidylcholine/phosphatidylserine (PC/PS, 9:1 w/w) vesicles containing octadecylrhodamine (OR) acceptor with a K(d) (app) = 16 micro g/ml, whereas Fl-APC (or DEGR-APC) bound to PC/PS/GlcCer(OR) (8:1:1) vesicles with a K(d) (app) = 3 micro g/ml. This 5-fold increase in apparent affinity was not species-specific since bovine DEGR-APC also showed a similar GlcCer-dependent enhancement of binding of APC to PC/PS vesicles. From the efficiency of fluorescence resonance energy transfer, distances of closest approach of approximately 63 and approximately 64 A were estimated between the dansyl on DEGR-APC and rhodamine in PC/PS/GlcCer(OR) and PC/PS(OR), respectively, assuming kappa(2) = 2/3. DEGR-APC bound to short chain C8-GlcCer with an apparent K(d) of 460 nm. The presence of C8-GlcCer selectively enhanced the binding of C16,6-NBD-phosphatidylserine but not C16,6-7-nitrobenz-2-oxa-1,3-diazole (NBD)-phosphatidylcholine to coumarin-labeled APC. These data suggest that APC binds to GlcCer, that PC/PS/GlcCer vesicles like PC/PS vesicles bind to the N-terminal gamma-carboxyglutamic acid domain of APC, and that one mechanism by which GlcCer enhances the activity of APC is by increasing its affinity for membrane surfaces containing negatively charged phospholipids.
- Published
- 2003
- Full Text
- View/download PDF
25. Factor Va increases the affinity of factor Xa for prothrombin: a binding study using a novel photoactivable thiol-specific fluorescent probe.
- Author
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Yegneswaran S, Fernández JA, Griffin JH, and Dawson PE
- Subjects
- Cross-Linking Reagents radiation effects, Fluorescence Polarization, Fluorescent Dyes radiation effects, Humans, Methods, Photoaffinity Labels radiation effects, Protein Binding drug effects, Sulfhydryl Compounds, Ultraviolet Rays, Factor Va pharmacology, Factor Xa metabolism, Prothrombin metabolism
- Abstract
The multiprotein complex of factor Xa, factor Va, and prothrombin efficiently generates the blood-clotting agent, thrombin. Here, the formation of the factor Xa*prothrombin complex and the effects of factor Va on this complex were examined using a photoactivable thiol-specific fluorescent probe (LWB), which was synthesized and incorporated into the active site of factor Xa. The use of fluorescent LWB illustrated that factor Xa has an increased affinity for prothrombin in the presence of factor Va. Further exposure of these components to UV light resulted in a specific photocrosslinking of LWB-factor Xa to prothrombin, suggesting a physical association between these proteins. These data demonstrate that LWB can successfully function both as a spectroscopic probe and as a photocrosslinking reagent for studying protein-protein interactions.
- Published
- 2002
- Full Text
- View/download PDF
26. Anticoagulant dysfunction of human Arg352Trp-activated protein C caused by defective factor Va inactivation.
- Author
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Rintelen C, Yegneswaran S, and Griffin JH
- Subjects
- Amino Acid Substitution, Anticoagulants pharmacology, Chromogenic Compounds metabolism, Dose-Response Relationship, Drug, Factor V drug effects, Factor VIIIa drug effects, Factor Va drug effects, Humans, Kinetics, Mutagenesis, Site-Directed, Oligopeptides metabolism, Partial Thromboplastin Time, Protein C drug effects, Protein C pharmacology, Protein S pharmacology, Pyrrolidonecarboxylic Acid analogs & derivatives, Recombinant Proteins drug effects, Recombinant Proteins pharmacology, Thrombin pharmacology, Factor Va metabolism, Protein C genetics, Recombinant Proteins genetics
- Abstract
The dysfunctional mutant R352W-protein C was found in two patients with venous thrombosis. The mutant R352A-protein C was constructed to define the contribution of charge/size of the residue at 352 on protein C (chymotrypsin numbering 187). Compared with wild type-protein C, R352W-protein C showed no difference in activation by thrombin-thrombomodulin or alpha-thrombin. However, R352W-activated protein C (APC) anticoagulant activity (aPTT assay) was reduced to approximately 65%. Although the catalytic efficiency of R352W-APC towards the oligopeptide substrate S-2366 was unperturbed, factor Va and R506Q-factor Va were not efficiently inactivated by R352W-APC compared with wild type-APC. R352A-APC showed reduced anticoagulant activity and reduced efficiency in factor Va inactivation and in factor VIIIa-inactivation in the presence of protein S. These observations suggest that the dysfunction of R352W-APC in factor Va inactivation may be one of the mechanisms leading to venous thrombosis in affected patients and that R352 plays an important role in the physiological functioning of APC.
- Published
- 2001
27. Conformational changes in activated protein C caused by binding of the first epidermal growth factor-like module of protein S.
- Author
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Hackeng TM, Yegneswaran S, Johnson AE, and Griffin JH
- Subjects
- Amino Acid Sequence, Binding Sites, Molecular Sequence Data, Protein Binding, Protein Conformation, Rhodamines chemistry, Epidermal Growth Factor metabolism, Protein C chemistry, Protein C metabolism, Protein S metabolism
- Abstract
The first epidermal growth factor-like module of human plasma protein S (EGF1, residues 76-116) was chemically synthesized and tested for its ability to inhibit the anticoagulant cofactor activity of protein S for the anticoagulant protease, activated protein C (APC). EGF1 completely inhibited the stimulation of APC activity by protein S in plasma coagulation assays, with 50% inhibition at approx. 1 microM+ EGF1, suggesting direct binding of EGF1 to APC. To investigate a direct interaction between EGF1 and APC, fluorescence resonance energy transfer (FRET) experiments were employed. APC labelled in the active site with fluorescein as the donor, and phospholipid vesicles containing octadecylrhodamine as the acceptor, showed that EGF1 association with APC caused an increase in energy transfer consistent with a relocation of the active site of APC from 94 A (9.4 nm) to 85 A above the phospholipid surface (assuming kappa(2)=2/3). An identical increase in energy transfer between the APC active site-bound fluorescein and phospholipid-bound rhodamine was obtained upon association of protein S or protein S-C4b-binding protein complex with APC. The latter suggests the presence of a ternary complex of protein S-C4b-binding protein with APC on the phospholipid surface. To confirm a direct interaction of EGF1 with APC, rhodamine was covalently attached to the alpha-N-terminus of EGF1, and binding of the labelled EGF1 to APC was directly demonstrated using FRET. The data suggested a separation between the active site of APC and the N-terminus of EGF1 of 76 A (kappa(2)=2/3), placing the APC-bound protein S-EGF1 close to, but above, the phospholipid surface and near the two EGF domains of APC. Thus we provide direct evidence for binding of protein S-EGF1 to APC and show that it induces a conformational change in APC.
- Published
- 2000
- Full Text
- View/download PDF
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