164 results on '"Yaroslav Z. Khimyak"'
Search Results
2. The impact of psyllium gelation behaviour on in vitro colonic fermentation properties
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Hannah C. Harris, Noelia Pereira, Todor Koev, Yaroslav Z. Khimyak, Gleb E. Yakubov, and Frederick J. Warren
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General Chemical Engineering ,General Chemistry ,Food Science - Abstract
Psyllium is a viscous, gel forming fibre with properties that have led it to be used for alleviating gastrointestinal discomfort. We have used previously identified fractions of psyllium with differing flow properties. Fraction 1 (F1) forms a non-gelling solution containing rhamnose. galactose, and arabinose. Fraction 2 (F2) forms a fluid-like gel containing mainly xylose and arabinose, Fraction 3 (F3) has almost identical monosaccharide and linkage composition to F2, but forms an insoluble, self-supporting gel. We performed in vitro batch fermentation experiments seeded with human stool. Metabolomics were performed using 1H NMR, and FISH with calcofluor white and direct red 23 were used to visualise the gels after in vitro fermentation of the fractions. The total amount of gas and short chain fatty acid produced was significantly higher for F1, compared to F2 and F3. F3 gas production was significantly lower than F2, but metabolite production between F2 and F3 did not differ. All fractions preferentially lead to the production of propionate instead of butyrate and were produced in the ratio of 58:35:7, 54:38:8, and 61:33:6 (acetate: propionate: butyrate) for F1, F2, and F3 respectively. Microscopy showed differences in how the fractions broke down and demonstrated the localisation of bacteria on the outer edge of each fraction. These results suggest that for these psyllium fractions the structure is a key factor that determines fermentability. Flow properties may play a role in gas production, suggesting directions for future investigation. Isolated fractions may have clinical benefit above that of unrefined psyllium powder aiding in the treatment of gastrointestinal discomfort.
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- 2023
3. Nature of the Structural and Dynamical Disorder in Organic Cocrystals with a True Nanometric Size Channel-Like Architecture
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Luisa Roca-Paixão, Natália T. Correia, Florence Danède, Maria T. Viciosa, Alexander Lee Morritt, Yaroslav Z. Khimyak, Frédéric Affouard, Unité Matériaux et Transformations - UMR 8207 (UMET), Centrale Lille-Institut de Chimie du CNRS (INC)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Universidade de Lisboa = University of Lisbon (ULISBOA), and University of East Anglia [Norwich] (UEA)
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Diffusion ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,General Materials Science ,General Chemistry ,Peptides and proteins ,[PHYS.COND.CM-DS-NN]Physics [physics]/Condensed Matter [cond-mat]/Disordered Systems and Neural Networks [cond-mat.dis-nn] ,Molecules ,Condensed Matter Physics ,Diffraction ,Molecular structure ,[PHYS.COND.CM-SCM]Physics [physics]/Condensed Matter [cond-mat]/Soft Condensed Matter [cond-mat.soft] - Abstract
International audience; The nature of the structural and dynamical disorder of the nanoporous organic cocrystal carbamazepine-tartaric acid designed by liquid-assisted grinding is investigated through complementary solid-state NMR, X-ray diffraction, and broadband dielectric spectroscopy experiments combined with molecular dynamics simulations. In this article, we especially highlight that the tartaric acid molecules present in the channel-like cocrystalline architecture show both translational and rotational dynamical disorder. Such a disorder seems only partial since tartaric acid molecules are strongly hydrogen-bonded to the carbamazepine molecules which form the channels, and they thus share with them some order. Tartaric acid species are organized as one-dimensional interrupted single files of molecules weakly hydrogen-bonded between them. Translational dynamics occurs by small hops of about 6–7 Å, consistent with the distance between first neighbors. At short times, it can be described as a single-file diffusion process, while at longer times, the classical diffusion (Fickian) is recovered. Random motions are explained by the presence of several short single files of molecules in the channel instead of just one single file. Rotational dynamics is interpreted as rotational jumps between preferred orientations. It gives rise to a change of the molecular dipole moments orientations, which are detected by dielectric relaxation spectroscopy. Freezing out of the rotational molecular mobility is detected in the temperature range [173–193] K concomitantly in the presence of a kink in the temperature evolution of the crystalline cell volume, which is usually associated with the glass transition phenomenon. It reveals a remarkable link between the molecular mobility of the tartaric acid molecules and the overall crystal anharmonicity. The present findings aim to demonstrate the interest of disordered channel-like cocrystals for investigation of dynamics in nanoconfinement environments.
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- 2023
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4. Solid-state NMR spectroscopy of roasted and ground coffee samples: Evidences for phase heterogeneity and prospects of applications in food screening
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Jair C.C. Freitas, Maryam Ejaz, Aline T. Toci, Wanderson Romão, and Yaroslav Z. Khimyak
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General Medicine ,Food Science ,Analytical Chemistry - Abstract
The advancement in the use of spectroscopic techniques to investigate coffee samples is of high interest especially considering the widespread problems with coffee adulteration and counterfeiting. In this work, the use of solid-state nuclear magnetic resonance (NMR) is investigated as a means to probe the various chemically-distinct phases existent in roasted coffee samples and to detect the occurrence of counterfeiting or adulterations in coffee blends. Routine solid-state
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- 2022
5. Starch hydrogels as targeted colonic drug delivery vehicles
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Todor T. Koev, Hannah C. Harris, Sara Kiamehr, Yaroslav Z. Khimyak, and Frederick J. Warren
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Excipients ,Drug Delivery Systems ,Polymers and Plastics ,Organic Chemistry ,Materials Chemistry ,Humans ,Hydrogels ,Starch ,Hydrogen-Ion Concentration - Abstract
Targeted colonic drug delivery systems are needed for the treatment of endemic colorectal pathologies, such as Crohn's disease, ulcerative colitis, and colorectal cancer. These drug delivery vehicles are difficult to formulate, as they need to remain structurally intact whilst navigating a wide range of physiological conditions across the upper gastrointestinal tract. In this work we show how starch hydrogel bulk structural and molecular level parameters influence their properties as drug delivery platforms. The in vitro protocols mimic in vivo conditions, accounting for physiological concentrations of gastrointestinal hydrolytic enzymes and salts. The structural changes starch gels undergo along the entire length of the human gastrointestinal tract have been quantified, and related to the materials' drug release kinetics for three different drug molecules, and interactions with the large intestinal microbiota. It has been demonstrated how one can modify their choice of starch in order to fine tune its corresponding hydrogel's pharmacokinetic profile.
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- 2022
6. Fulvic acid increases forage legume growth inducing preferential up-regulation of nodulation and signalling-related genes
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Jitender Cheema, Freddie Morrison, Claire Domoney, Juan C. Muñoz-García, Anthony J. Miller, Paul Brett, Yaroslav Z. Khimyak, Lionel Hill, and Nicola M Capstaff
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0106 biological sciences ,0301 basic medicine ,Physiology ,Forage ,Plant Science ,Biology ,01 natural sciences ,Plant Root Nodulation ,03 medical and health sciences ,Benzopyrans ,nodulation ,Cultivar ,Medicago sativa ,Mode of action ,Symbiosis ,Gene ,Legume ,transcriptomic analysis ,Forage crops ,AcademicSubjects/SCI01210 ,humic substances ,food and beverages ,Fabaceae ,biology.organism_classification ,yield ,Research Papers ,Up-Regulation ,030104 developmental biology ,Agronomy ,Plant—Environment Interactions ,Rhizobium ,Bacteria ,010606 plant biology & botany ,fulvic acid - Abstract
Fulvic acid treatment increases yield and nodulation in Medicago sativa, in glasshouse and field experiments. De novo transcriptome analysis shows the up-regulation of early nodulation genes in response to fulvic acid., The use of potential biostimulants is of broad interest in plant science for improving yields. The application of a humic derivative called fulvic acid (FA) may improve forage crop production. FA is an uncharacterized mixture of chemicals and, although it has been reported to increase growth parameters in many species including legumes, its mode of action remains unclear. Previous studies of the action of FA have lacked appropriate controls, and few have included field trials. Here we report yield increases due to FA application in three European Medicago sativa cultivars, in studies which include the appropriate nutritional controls which hitherto have not been used. No significant growth stimulation was seen after FA treatment in grass species in this study at the treatment rate tested. Direct application to bacteria increased Rhizobium growth and, in M. sativa trials, root nodulation was stimulated. RNA transcriptional analysis of FA-treated plants revealed up-regulation of many important early nodulation signalling genes after only 3 d. Experiments in plate, glasshouse, and field environments showed yield increases, providing substantial evidence for the use of FA to benefit M. sativa forage production.
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- 2020
7. Molecular Level Characterisation of the Surface of Carbohydrate-Functionalised
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Karolina, Krajewska, Anna M, Gołkowska, Maciej, Nowak, Marta, Kozakiewicz-Latała, Wojciech, Pudło, Andrzej, Żak, Bożena, Karolewicz, Yaroslav Z, Khimyak, and Karol P, Nartowski
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Drug Delivery Systems ,Magnetic Resonance Spectroscopy ,Nanoparticles ,Lactose ,Silicon Dioxide ,Porosity - Abstract
Atomistic level characterisation of external surface species of mesoporous silica nanoparticles (MSN) poses a significant analytical challenge due to the inherently low content of grafted ligands. This study proposes the use of HR-MAS NMR spectroscopy for a molecular level characterisation of the external surface of carbohydrate-functionalised nanoparticles. MSN differing in size (32 nm, 106 nm, 220 nm) were synthesised using the sol-gel method. The synthesised materials displayed narrow particle size distribution (based on DLS and TEM results) and a hexagonal arrangement of the pores with a diameter of ca. 3 nm as investigated with PXRD and N
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- 2022
8. Octylamine-Modified Cellulose Nanocrystal-Enhanced Stabilization of Pickering Emulsions for Self-Healing Composite Coatings
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Guofan Xu, Rinat Nigmatullin, Todor T. Koev, Yaroslav Z. Khimyak, Ian. P. Bond, and Stephen J. Eichhorn
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octylamine ,Pickering emulsion ,General Materials Science ,linseed oil ,cellulose nanocrystals - Abstract
Linseed oil-in-water Pickering emulsions are stabilized by both sulfated CNCs (sCNCs) and octylamine-modified CNCs (oCNCs). oCNCs with hydrophobic moieties grafted on the surfaces of otherwise intact nanocrystals provided emulsions exhibiting stronger resistance to creaming of oil droplets, compared with unmodified sCNCs. sCNCs were not able to completely stabilize linseed oil in water at low CNC concentrations while oCNCs provided emulsions with no unemulsified oil residue at the same concentrations. Oil droplets in oCNC emulsions were smaller than those in samples stabilized by sCNCs, corresponding with an increased hydrophobicity of oCNCs. Cryo-SEM imaging of stabilized droplets demonstrated the formation of a CNC network at the oil–water interface, protecting the oil droplets from coalescence even after compaction under centrifugal force. These oil droplets, protected by a stabilized CNC network, were dispersed in a water-based commercial varnish, to generate a composite coating. Scratches made on these coatings self-healed as a result of the reaction of the linseed oil bled from the damaged droplets with oxygen. The leakage and drying of the linseed oil at the location of the scratches happened without intervention and was accelerated by the application of heat.
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- 2022
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9. Directing Crystallization Outcomes of Conformationally Flexible Molecules: Polymorphs, Solvates, and Desolvation Pathways of Fluconazole
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Maciej Nowak, Aleksandra J. Dyba, Jan Janczak, Alexander Morritt, László Fábián, Bożena Karolewicz, Yaroslav Z. Khimyak, Doris E. Braun, and Karol P. Nartowski
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Drug Discovery ,Thermogravimetry ,Molecular Conformation ,Solvents ,Pharmaceutical Science ,Molecular Medicine ,Crystallization ,Fluconazole - Abstract
Control over polymorphism and solvatomorphism in API assisted by structural information, e.g., molecular conformation or associations via hydrogen bonds, is crucial for the industrial development of new drugs, as the crystallization products differ in solubility, dissolution profile, compressibility, or melting temperature. The stability of the final formulation and technological factors of the pharmaceutical powders further emphasize the importance of precise crystallization protocols. This is particularly important when working with highly flexible molecules with considerable conformational freedom and a large number of hydrogen bond donors or acceptors (e.g., fluconazole, FLU). Here, cooling and suspension crystallization were applied to access polymorphs and solvates of FLU, a widely used azole antifungal agent with high molecular flexibility and several reported polymorphs. Each of four polymorphic forms, FLU I, II, III, or IV, can be obtained from the same set of alcohols (MeOH, EtOH, isPrOH) and DMF via careful control of the crystallization conditions. For the first time, two types of isostructural channel solvates of FLU were obtained (nine new structures). Type I solvates were prepared by cooling crystallization in Tol, ACN, DMSO, BuOH, and BuON. Type II solvates formed in DCM, ACN, nPrOH, and BuOH during suspension experiments. We propose desolvation pathways for both types of solvates based on the structural analysis of the newly obtained solvates and their desolvation products. Type I solvates desolvate to FLU form I by hydrogen-bonded chain rearrangements. Type II solvates desolvation leads first to an isomorphic desolvate, followed by a phase transition to FLU form II through hydrogen-bonded dimer rearrangement. Combining solvent-mediated phase transformations with structural analysis and solid-state NMR, supported by periodic electronic structure calculations, allowed us to elucidate the interrelations and transformation pathways of FLU.
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- 2022
10. Self-Correcting Method for the Measurement of Free Calcium and Magnesium Concentrations by 1H NMR
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Jesús Angulo, Thomas Hicks, Yaroslav Z. Khimyak, and Matthew Wallace
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Analyte ,Chemistry ,Magnesium ,Chemical shift ,010401 analytical chemistry ,Analytical chemistry ,chemistry.chemical_element ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Ion ,Ionic strength ,Proton NMR ,Conformational isomerism - Abstract
A method for the direct measurement of free Ca2+ and Mg2+ concentrations in the range of 1–100 mM by NMR spectroscopy is demonstrated. The method automatically corrects for the effect of ionic strength on the activity of the species in solution and works satisfactorily even when significant concentrations of competitive ions are present. The method requires only the measurement of the 1H chemical shifts of our reporter ligands, glycolate and sulfoacetate, and is easily implemented using NMR imaging techniques. As a proof of concept, we extract the thermodynamic binding constants and conformer distributions of analyte ligands using an in situ ion gradient. Existing approaches for the measurement of free Ca2+ or Mg2+ concentrations by NMR operate only at very low ion concentrations or else require careful recalibration for different sample conditions. By providing the free Ca2+ or Mg2+ concentrations, the proposed methodology significantly enhances the information obtainable via NMR investigations of ion-responsive systems.
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- 2019
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11. Mesoporous Aluminosilicate Nanofibers with a Low Si/Al Ratio as Acidic Catalyst for Hydrodeoxygenation of Phenol
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Sophie Hermans, Tommy Haynes, Alexander Morritt, Yaroslav Z. Khimyak, Didier Desmecht, Vincent Dubois, Thibaut D'hondt, and UCL - SST/IMCN - Institute of Condensed Matter and Nanosciences
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Cyclohexane ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Bifunctional catalyst ,Inorganic Chemistry ,chemistry.chemical_compound ,Adsorption ,Chemical engineering ,Aluminosilicate ,Physical and Theoretical Chemistry ,Mesoporous material ,Selectivity ,Hydrodeoxygenation - Abstract
Mesoporous aluminosilicate nanofibers (mASNF) were prepared using hard and soft dual templates approach. The mesoporous material was fully characterized and its acidic nature was confirmed by FTIR spectroscopy of pyridine adsorption and 27Al/29Si solid state NMR. Thanks to the incorporated aluminum atoms, the acidic material showed high hydrothermal stability which is an essential property for biomass conversion applications. The catalytic performance of Pd supported on mASNF for hydrodeoxygenation (HDO) of lignin model compound was also investigated. A complete conversion and a high selectivity towards cyclohexane (up to 95%) starting from phenol were achieved with this bifunctional catalyst. In comparison, no cyclohexane has been produced with a non-acidic material which underlines the importance of acidic sites in HDO process selectivity control. Moreover, the catalyst can be recycled without losing its initial structure.
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- 2019
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12. Tunable Supramolecular Gel Properties by Varying Thermal History
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Sisir Debnath, Neil T. Hunt, Sangita Roy, Susana M. Ramalhete, Yaroslav Z. Khimyak, Rein V. Ulijn, Pim W. J. M. Frederix, Nadeem Javid, Andrew R. Hirst, Jesús Angulo, Yousef M. Abul-Haija, and Sharon M. Kelly
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Supramolecular chirality ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,technology, industry, and agriculture ,Stacking ,Supramolecular chemistry ,macromolecular substances ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Hydrophobic effect ,Chemical engineering ,Self-healing hydrogels ,Peptide amphiphile ,Molecule ,QD ,Self-assembly - Abstract
The possibility of using differential pre-heating prior to supramolecular gelation to control the balance between hydrogen-bonding and aromatic stacking interactions in supramolecular gels and obtain consequent systematic regulation of structure and properties is demonstrated. Using a model aromatic peptide amphiphile, Fmoc-tyrosyl-leucine (Fmoc-YL) and a combination of fluorescence, infrared, circular dichroism and NMR spectroscopy, it is shown that the balance of these interactions can be adjusted by temporary exposure to elevated temperatures in the range 313-365 K, followed by supramolecular locking in the gel state by cooling to room temperature. Distinct regimes can be identified regarding the balance between H-bonding and aromatic stacking interactions, with a transition point at 333 K. Consequently, gels can be obtained with customizable properties, including supramolecular chirality and gel stiffness. The differential supramolecular structures also result in changes in proteolytic stability, highlighting the possibility of obtaining a range of supramolecular architectures from a single molecular structure by simply controlling the pre-assembly temperature.
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- 2019
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13. Self-assembling, supramolecular chemistry and pharmacology of amphotericin B: Poly-aggregates, oligomers and monomers
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Raquel Fernández-García, Juan C. Muñoz-García, Matthew Wallace, Laszlo Fabian, Elena González-Burgos, M. Pilar Gómez-Serranillos, Rafaela Raposo, Francisco Bolás-Fernández, M. Paloma Ballesteros, Anne Marie Healy, Yaroslav Z. Khimyak, and Dolores R. Serrano
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Mammals ,Antifungal Agents ,Amphotericin B ,Ergosterol ,Pharmaceutical Science ,Animals ,Phospholipids ,Deoxycholic Acid - Abstract
Antifungal drugs such as amphotericin B (AmB) interact with lipids and phospholipids located on fungal cell membranes to disrupt them and create pores, leading to cell apoptosis and therefore efficacy. At the same time, the interaction can also take place with cell components from mammalian cells, leading to toxicity. AmB was selected as a model antifungal drug due to the complexity of its supramolecular chemical structure which can self-assemble in three different aggregation states in aqueous media: monomer, oligomer (also known as dimer) and poly-aggregate. The interplay between AmB self-assembly and its efficacy or toxicity against fungal or mammalian cells is not yet fully understood. To the best of our knowledge, this is the first report that investigates the role of excipients in the supramolecular chemistry of AmB and the impact on its biological activity and toxicity. The monomeric state was obtained by complexation with cyclodextrins resulting in the most toxic state, which was attributed to the greater production of highly reactive oxygen species upon disruption of mammalian cell membranes, a less specific mechanism of action compared to the binding to the ergosterol located in fungal cell membranes. The interaction between AmB and sodium deoxycholate resulted in the oligomeric and poly-aggregated forms which bound more selectively to the ergosterol of fungal cell membranes. NMR combined with XRD studies elucidated the interaction between drug and excipient to achieve the AmB aggregation states, and ultimately, their diffusivity across membranes. A linear correlation between particle size and the efficacy/toxicity ratio was established allowing to modulate the biological effect of the drug and hence, to improve pharmacological regimens. However, particle size is not the only factor modulating the biological response but also the equilibrium of each state which dictates the fraction of free monomeric form available. Tuning the aggregation state of AmB formulations is a promising strategy to trigger a more selective response against fungal cells and to reduce the toxicity in mammalian cells.
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- 2021
14. Monovalent salt and pH-induced gelation of oxidized cellulose nanofibrils and starch networks: Combining rheology and small-angle X-Ray scattering
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Jennifer Ahn-Jarvis, Yaroslav Z. Khimyak, Julien Schmitt, Saffron J. Bryant, Marcelo A. da Silva, Kazi M. Zakir Hossain, Frederick J. Warren, Janet L. Scott, Karen J. Edler, and Vincenzo Calabrese
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Polymers and Plastics ,Starch ,Salt ,Salt (chemistry) ,Article ,lcsh:QD241-441 ,chemistry.chemical_compound ,lcsh:Organic chemistry ,Rheology ,salt ,Surface charge ,Cellulose ,chemistry.chemical_classification ,Gel ,Syneresis ,Small-angle X-ray scattering ,pH ,starch ,cellulose nanofibrils ,General Chemistry ,SAXS ,Chemical engineering ,chemistry ,Self-healing hydrogels ,Cellulose nanofibrils ,rheology - Abstract
Water quality parameters such as salt content and various pH environments can alter the stability of gels as well as their rheological properties. Here, we investigated the effect of various concentrations of NaCl and different pH environments on the rheological properties of TEMPO-oxidised cellulose nanofibril (OCNF) and starch-based hydrogels. Addition of NaCl caused an increased stiffness of the OCNF:starch (1:1 wt%) blend gels, where salt played an important role in reducing the repulsive OCNF fibrillar interactions. The rheological properties of these hydrogels were unchanged at pH 5.0 to 9.0. However, at lower pH (4.0), the stiffness and viscosity of the OCNF and OCNF:starch gels appeared to increase due to proton-induced fibrillar interactions. In contrast, at higher pH (11.5), syneresis was observed due to the formation of denser and aggregated gel networks. Interactions as well as aggregation behaviour of these hydrogels were explored via ζ-potential measurements. Furthermore, the nanostructure of the OCNF gels was probed using small-angle X-ray scattering (SAXS), where the SAXS patterns showed an increase of slope in the low-q region with increasing salt concentration arising from aggregation due to the screening of the surface charge of the fibrils.
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- 2021
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15. Chemoenzymatic synthesis of fluorinated cellodextrins identifies a new allomorph for cellulose‐like materials
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Dinu Iuga, Sergey A. Nepogodiev, Marcus A. Johns, Rinat Nigmatullin, Peterson de Andrade, Robert A. Field, Yaroslav Z. Khimyak, Valeria Gabrielli, Robert L. Harniman, Giulia Pergolizzi, Jesús Angulo, Stephen J. Eichhorn, László Fábián, and Juan C. Muñoz-García
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chemistry.chemical_element ,010402 general chemistry ,Antiparallel (biochemistry) ,01 natural sciences ,Catalysis ,chemistry.chemical_compound ,Crystallinity ,soft-matter materials ,Cellodextrin ,Manchester Institute of Biotechnology ,fluorine ,Cellodextrins ,Cellulose ,Aqueous solution ,Full Paper ,010405 organic chemistry ,Organic Chemistry ,Intermolecular force ,Fluorinated Cellodextrins ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Chemoenzymatic Synthesis ,Supramolecular Materials ,Full Papers ,chemoenzymatic synthesis ,ResearchInstitutes_Networks_Beacons/manchester_institute_of_biotechnology ,NMR ,0104 chemical sciences ,allomorphs ,chemistry ,Chemical engineering ,Fluorine - Abstract
Understanding the fine details of the self‐assembly of building blocks into complex hierarchical structures represents a major challenge en route to the design and preparation of soft‐matter materials with specific properties. Enzymatically synthesised cellodextrins are known to have limited water solubility beyond DP9, a point at which they self‐assemble into particles resembling the antiparallel cellulose II crystalline packing. We have prepared and characterised a series of site‐selectively fluorinated cellodextrins with different degrees of fluorination and substitution patterns by chemoenzymatic synthesis. Bearing in mind the potential disruption of the hydrogen‐bond network of cellulose II, we have prepared and characterised a multiply 6‐fluorinated cellodextrin. In addition, a series of single site‐selectively fluorinated cellodextrins was synthesised to assess the structural impact upon the addition of one fluorine atom per chain. The structural characterisation of these materials at different length scales, combining advanced NMR spectroscopy and microscopy methods, showed that a 6‐fluorinated donor substrate yielded multiply 6‐fluorinated cellodextrin chains that assembled into particles presenting morphological and crystallinity features, and intermolecular interactions, that are unprecedented for cellulose‐like materials., Generating glycomaterials: Enzymatic incorporation of singly and multiply fluorinated glucose residues into cellodextrin chains produces selectively fluorinated cellodextrins that self‐assemble into crystalline materials. Multiply 6‐fluorinated cellodextrin gave rise to an allomorph not previously reported for celluloses or cellulose‐like materials. Our findings highlight the potential of chemoenzymatic synthesis for generating novel glycomaterials of controlled molecular structure and morphology.
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- 2021
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16. Molecular Recognition of Natural and Non-Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy
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Giulia Pergolizzi, Juan C. Muñoz-García, Robert A. Field, Valeria Gabrielli, Peterson de Andrade, Yaroslav Z. Khimyak, Jesús Angulo, Universidad de Sevilla. Departamento de Química orgánica, and Ministerio de Ciencia e Innovación (España)
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Cellodextrin phosphorylase ,chemistry.chemical_classification ,Magnetic Resonance Spectroscopy ,Chemistry ,Organic Chemistry ,Context (language use) ,Protein-ligand interactions ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Polysaccharide ,ResearchInstitutes_Networks_Beacons/manchester_institute_of_biotechnology ,Combinatorial chemistry ,Catalysis ,Clostridium thermocellum ,chemistry.chemical_compound ,Molecular recognition ,Ligand-based NMR spectroscopy ,Glucosyltransferases ,Polysaccharides ,Docking (molecular) ,Manchester Institute of Biotechnology ,Molecular docking ,Cellulose ,Binding selectivity - Abstract
β-1→4-Glucan polysaccharides like cellulose, derivatives and analogues, are attracting attention due to their unique physicochemical properties, as ideal candidates for many different applications in biotechnology. Access to these polysaccharides with a high level of purity at scale is still challenging, and eco-friendly alternatives by using enzymes in vitro are highly desirable. One prominent candidate enzyme is cellodextrin phosphorylase (CDP) from Ruminiclostridium thermocellum, which is able to yield cellulose oligomers from short cellodextrins and α-d-glucose 1-phosphate (Glc-1-P) as substrates. Remarkably, its broad specificity towards donors and acceptors allows the generation of highly diverse cellulose-based structures to produce novel materials. However, to fully exploit this CDP broad specificity, a detailed understanding of the molecular recognition of substrates by this enzyme in solution is needed. Herein, we provide a detailed investigation of the molecular recognition of ligands by CDP in solution by saturation transfer difference (STD) NMR spectroscopy, tr-NOESY and protein-ligand docking. Our results, discussed in the context of previous reaction kinetics data in the literature, allow a better understanding of the structural basis of the broad binding specificity of this biotechnologically relevant enzyme.
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- 2021
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17. Structural heterogeneities in starch hydrogels
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Yaroslav Z. Khimyak, Dinu Iuga, Juan C. Muñoz-García, Frederick J. Warren, and Todor Koev
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Materials science ,Polymers and Plastics ,Biocompatibility ,PXRD, powder x-ray diffraction ,CP/MAS NMR ,Starch ,CPSP/MAS NMR ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Article ,chemistry.chemical_compound ,Internal dynamics ,Water dynamics ,DSC, differential scanning calorimetry ,NMR spectroscopy ,Rheology ,CPSP/MAS, cross polarisation single pulse – magic angle spinning ,HR-MAS, high-resolution – magic angle spinning ,Materials Chemistry ,CP/MAS, cross polarisation – magic angle spinning ,NMR, nuclear magnetic resonance ,chemistry.chemical_classification ,Network organisation ,Organic Chemistry ,food and beverages ,Polymer ,Nuclear magnetic resonance spectroscopy ,021001 nanoscience & nanotechnology ,Starch hydrogels ,0104 chemical sciences ,chemistry ,Chemical engineering ,Self-healing hydrogels ,0210 nano-technology ,Powder diffraction ,WPTCP, water polarisation transfer cross polarisation - Abstract
Highlights • Produced starch hydrogels through high temperature-pressure gelatinisation. • Employed a range of NMR methods to probe the molecular mobility and water dynamics. • Reported for the first time highly dynamic starch chains in the solvent phase of gels. • Correlated the degree of chain structural mobility with bulk properties. • Revealed a previously unknown level of molecular organisation in starch gels., Hydrogels have a complex, heterogeneous structure and organisation, making them promising candidates for advanced structural and cosmetics applications. Starch is an attractive material for producing hydrogels due to its low cost and biocompatibility, but the structural dynamics of polymer chains within starch hydrogels are not well understood, limiting their development and utilisation. We employed a range of NMR methodologies (CPSP/MAS, HR-MAS, HPDEC and WPT-CP) to probe the molecular mobility and water dynamics within starch hydrogels featuring a wide range of physical properties. The insights from these methods were related to bulk rheological, thermal (DSC) and crystalline (PXRD) properties. We have reported for the first time the presence of highly dynamic starch chains, behaving as solvated moieties existing in the liquid component of hydrogel systems. We have correlated the chains’ degree of structural mobility with macroscopic properties of the bulk systems, providing new insights into the structure-function relationships governing hydrogel assemblies.
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- 2020
18. A natural mutation in Pisum sativum L. (pea) alters starch assembly and improves glucose homeostasis in humans
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Mai Khatib, Yaroslav Z. Khimyak, Jose Ivan Serrano-Contreras, Tom Preston, Frederick J. Warren, Lee Kellingray, Todor Koev, Elaine Holmes, Cathrina H. Edwards, Arjan Narbad, Louise J. Salt, Rachael Stanley, Rasha Alshaalan, Maria N. Charalambides, Katerina Petropoulou, Claire Domoney, Julian Marchesi, Kathryn Cross, Jesus Miguens Blanco, Ian F. Godsland, Peter J. Wilde, Nicholas Penney, Natalia Perez-Moral, Gary Frost, Douglas J. Morrison, Edward S. Chambers, Rocio Castro Seoane, Isabel Garcia-Perez, and Julie A. K. McDonald
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biology ,Starch ,food and beverages ,biology.organism_classification ,Small intestine ,Pisum ,chemistry.chemical_compound ,Sativum ,Postprandial ,medicine.anatomical_structure ,chemistry ,In vivo ,medicine ,Glucose homeostasis ,Animal Science and Zoology ,Food science ,sense organs ,Agronomy and Crop Science ,Ex vivo ,Food Science - Abstract
Elevated postprandial glucose (PPG) is a significant risk factor for non-communicable diseases globally. Currently, there is a limited understanding of how starch structures within a carbohydrate-rich food matrix interact with the gut luminal environment to control PPG. Here, we use pea seeds (Pisum sativum) and pea flour, derived from two near-identical pea genotypes (BC1/19RR and BC1/19rr) differing primarily in the type of starch accumulated, to explore the contribution of starch structure, food matrix and intestinal environment to PPG. Using stable isotope 13C-labelled pea seeds, coupled with synchronous gastric, duodenal and plasma sampling in vivo, we demonstrate that maintenance of cell structure and changes in starch morphology are closely related to lower glucose availability in the small intestine, resulting in acutely lower PPG and promotion of changes in the gut bacterial composition associated with long-term metabolic health improvements. Seeds, flour and food products derived from two near-identical pea genotypes (BC1/19RR and BC1/19rr) were utilized in a series of in vitro, ex vivo and in vivo studies to explore the contribution of starch structure, food matrix and intestinal environment to postprandial glycaemia.
- Published
- 2020
19. Rapid determination of the acidity, alkalinity and carboxyl content of aqueous samples by 1H NMR with minimal sample quantity
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Yaroslav Z. Khimyak, Matthew Wallace, Kevin Lam, and Agne Kuraite
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Aqueous solution ,010401 analytical chemistry ,Potentiometric titration ,Inorganic chemistry ,Alkalinity ,Titratable acid ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Acidity/alkalinity ,chemistry ,Titration ,Carboxylate ,Methylphosphonic acid - Abstract
The titratable acidity, alkalinity, and carboxylate content are fundamental properties required for the understanding of aqueous chemical systems. Here, we present a set of new methods that allow these properties to be determined directly by 1H NMR without the labor, cost, and sample quantity associated with running separate potentiometric or conductometric titrations. Our methods require only the measurement of the pH-sensitive 1H chemical shifts of indicator molecules and do not require the tedious titration of reagents into a sample. To determine the titratable acidity, an excess of 2-methylimidazole (2MI) is added to a sample and the quantity of protons absorbed by 2MI is determined from its 1H chemical shifts. The titratable alkalinity of a sample can be similarly determined using acetic acid. To determine the concentration of deprotonated carboxylates, a sample is acidified with HCl, and the quantity of H+ absorbed is determined from the 1H chemical shift of methylphosphonic acid. We validate our methods by demonstrating the measurement of the acidity of fruit-flavored drinks, the alkalinity of tap water, and the carboxylate content of nanocellulose dispersions.
- Published
- 2020
20. Rapid Determination of the Acidity, Alkalinity and Carboxyl Content of Aqueous Samples by
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Matthew, Wallace, Kevin, Lam, Agne, Kuraite, and Yaroslav Z, Khimyak
- Abstract
The titratable acidity, alkalinity, and carboxylate content are fundamental properties required for the understanding of aqueous chemical systems. Here, we present a set of new methods that allow these properties to be determined directly by
- Published
- 2020
21. Spin Diffusion Transfer Difference (SDTD) NMR: An Advanced Method for the Characterisation of Water Structuration Within Particle Networks
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Jesús Angulo, Juan C. Muñoz–García, Agne Kuraite, Valeria Gabrielli, Karen J. Edler, Yaroslav Z. Khimyak, Ridvan Nepravishta, and Marcelo A. da Silva
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Materials science ,Diffusion equation ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Biomaterials ,Colloid ,Saturation transfer difference NMR ,Colloid and Surface Chemistry ,Bound water ,Surface charge ,Soft matter ,Physics::Chemical Physics ,Physics::Biological Physics ,Quantitative Biology::Biomolecules ,Solvation ,Nuclear magnetic resonance spectroscopy ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Condensed Matter::Soft Condensed Matter ,Solvent ,Hydrogel ,Solvation properties ,Deuterium ,Spin diffusion ,Chemical physics ,Particle ,0210 nano-technology - Abstract
Saturation transfer difference (STD) NMR spectroscopy is a well‑known ligand‑based solution NMR technique used extensively for ligand epitope mapping, the identification of the nature of ligand binding sites, and the determination of ligand binding affinity. Recently, we have shown that STD NMR can be also applied to monitor changes in bound water during gelation of particulate dispersions. However, this technique is strongly dependent on gelator and solvent concentrations and does not report on the degree of organisation of the solvent within the particle network. This obscures the detailed understanding of the role of the solvent on gelation and precludes the comparison of solvation properties between dispersions prepared under different experimental conditions. In this work we report a novel STD NMR method to characterise the degree of solvent structuration in carbohydrate-based particulate dispersions by demonstrating for the first time that, for solvents interacting with large particles, the spin diffusion transfer build‑up curves can be modelled by the general one‑dimensional diffusion equation. Our novel approach, called Spin Diffusion Transfer Difference (SDTD) NMR, is independent of the gelator and solvent concentrations, allowing to monitor and compare the degree of solvent structuration in different gel networks. In addition, the simulation of SDTD build-up curves report on minimum distances (r) and spin diffusion rates (D) at the particle‑solvent interface. As a case study, we have characterised the degree of structuration of water and low molecular weight alcohols during the alcohol‑induced gelation of TEMPO-oxidised cellulose hydrogels by SDTD NMR, demonstrating the key role of water structuration on gel properties. SDTD NMR is a fast, robust and easy-to-implement solution NMR protocol that overcomes some of the limitations of the classical STD NMR approach when applied to the study of solvation. This technique can be readily extended to characterise the solvent(s) organisation in any type of particulate gels. Hence, the SDTD NMR method provides key insights on the role of water in the mechanism of gelation and the macroscopic properties of particulate gels, of fundamental importance for the design of soft matter materials with tuneable properties.
- Published
- 2020
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22. Hydrophobization of Cellulose Nanocrystals for Aqueous Colloidal Suspensions and Gels
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Yaroslav Z. Khimyak, Julien Schmitt, Stephen J. Eichhorn, Rinat Nigmatullin, Juan C. Muñoz-García, Janet L. Scott, Valeria Gabrielli, Karen J. Edler, Marcus A. Johns, Jesús Angulo, University of Bristol [Bristol], School of Chemical Sciences and Pharmacy, University of East Anglia, Norwich NR4 7TJ, affiliation inconnue, Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK, Laboratoire de Synthèse et Fonctionnalisation de Céramiques (LSFC), and Saint Gobain-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Materials science ,Polymers and Plastics ,Bioengineering ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Nanomaterials ,Biomaterials ,Contact angle ,chemistry.chemical_compound ,Suspensions ,X-Ray Diffraction ,Amphiphile ,Scattering, Small Angle ,Materials Chemistry ,Surface charge ,surface activity ,Cellulose ,chemistry.chemical_classification ,Small-angle X-ray scattering ,Cellulose nanocrystals ,Water ,Polymer ,021001 nanoscience & nanotechnology ,hydrophobization ,Pickering emulsion ,0104 chemical sciences ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,rheological properties ,chemistry ,Chemical engineering ,Nanoparticles ,0210 nano-technology ,Gels - Abstract
Surface hydrophobization of cellulose nanomaterials has been used in the development of nanofiller-reinforced polymer composites and formulations based on Pickering emulsions. Despite the well-known effect of hydrophobic domains on self-assembly or association of water-soluble polymer amphiphiles, very few studies have addressed the behavior of hydrophobized cellulose nanomaterials in aqueous media. In this study, we investigate the properties of hydrophobized cellulose nanocrystals (CNCs) and their self-assembly and amphiphilic properties in suspensions and gels. CNCs of different hydrophobicity were synthesized from sulfated CNCs by coupling primary alkylamines of different alkyl chain lengths (6, 8, and 12 carbon atoms). The synthetic route permitted the retention of surface charge, ensuring good colloidal stability of hydrophobized CNCs in aqueous suspensions. We compare surface properties (surface charge, ζ potential), hydrophobicity (water contact angle, microenvironment probing using pyrene fluorescence emission), and surface activity (tensiometry) of different hydrophobized CNCs and hydrophilic CNCs. Association of hydrophobized CNCs driven by hydrophobic effects is confirmed by X-ray scattering (SAXS) and autofluorescent spectroscopy experiments. As a result of CNC association, CNC suspensions/gels can be produced with a wide range of rheological properties depending on the hydrophobic/hydrophilic balance. In particular, sol–gel transitions for hydrophobized CNCs occur at lower concentrations than hydrophilic CNCs, and more robust gels are formed by hydrophobized CNCs. Our work illustrates that amphiphilic CNCs can complement associative polymers as modifiers of rheological properties of water-based systems.
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- 2020
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23. Solvent driven phase transitions of acyclovir – the role of water and solvent polarity
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Bożena Karolewicz, Alexander Morritt, Karol P. Nartowski, Julia Karabin, László Fábián, Yaroslav Z. Khimyak, and Maciej Nowak
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Chemistry ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Dosage form ,0104 chemical sciences ,Solvent ,NMR spectra database ,chemistry.chemical_compound ,Phase (matter) ,CASTEP ,Anhydrous ,Physical chemistry ,General Materials Science ,Methanol ,0210 nano-technology ,Hydrate - Abstract
Acyclovir, an antiviral purine derivative listed on the WHO's Model List of Essential Medicines, is commonly used in several different dosage forms from tablets to gels, oleogels and suspensions. Although temperature driven phase transitions of its commercially available 3 : 2 hydrate have been known since 2011, information on the solvent driven phase transitions of this drug has been limited. This study identifies the pathways of transformations of acyclovir forms I and V induced by organic solvents and water using the method of solution mediated phase transformation. The 3 : 2 hydrate, form V, undergoes dehydration to anhydrous form I in methanol, ethanol and N,N-dimethylformamide. Form I converts to anhydrous form II in dry methanol and N,N-dimethylformamide, while increased water content in the solvent prevents the transformation of form I to form II. Both forms I and V yield a gel-like material in dimethyl sulfoxide, composed of highly crystalline form II and reported here for the first time. Furthermore, significant differences in the thermal dehydration process of forms V and VI were observed using VT FTIR, including the first time report on a novel metastable ACV form VII formed upon dehydration of ACV dihydrate (form VI). High resolution solid-state NMR spectra of two anhydrous polymorphs (forms I and II) and two hydrates (forms V and VI) supported by DFT calculations using the CASTEP code are also presented.
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- 2019
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24. INCORPORATION OF ALUMINIUM INTO –CH2CH2–/–CH=CH–PMOS
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Yaroslav Z. Khimyak, Paul V. Wiper, and James T. A. Jones
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Anesthesiology and Pain Medicine ,Materials science ,chemistry ,Aluminium ,Inorganic chemistry ,chemistry.chemical_element ,PMOS logic - Published
- 2018
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25. Nanocrystallization of Rare Tolbutamide Form V in Mesoporous MCM-41 Silica
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Karol P. Nartowski, Lucy E. Hawarden, Diksha Malhotra, László Fábián, and Yaroslav Z. Khimyak
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Materials science ,Drug Compounding ,Tolbutamide ,Pharmaceutical Science ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Phase Transition ,law.invention ,MCM-41 ,law ,Drug Discovery ,Crystallization ,Drug Carriers ,Nanoporous ,Mesoporous silica ,Silicon Dioxide ,021001 nanoscience & nanotechnology ,Nanocrystalline material ,0104 chemical sciences ,Amorphous solid ,Chemical engineering ,Drug delivery ,Nanoparticles ,Molecular Medicine ,0210 nano-technology ,Mesoporous material ,Porosity - Abstract
Encapsulation of pharmaceuticals inside nanoporous materials is of increasing interest due to their possible applications as new generation therapeutics, theranostic platforms, or smart devices. Mesoporous silicas are leading materials to be used as nanohosts for pharmaceuticals. Further development of new generation of nanoscale therapeutics requires complete understanding of the complex host-guest interactions of organic molecules confined in nanosized chambers at different length scales. In this context, we present results showing control over formation and phase transition of nanosize crystals of model flexible pharmaceutical molecule tolbutamide confined inside 3.2 nm pores of the MCM-41 host. Using low loading levels (up to 30 wt %), we were able to stabilize the drug in highly dynamic amorphous/disordered state or direct the crystallization of the drug into highly metastable nanocrystalline form V of tolbutamide (at loading levels of 40 and 50 wt %), providing first experimental evidence for crystallization of pharmaceuticals inside the pores as narrow as 3.2 nm.
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- 2018
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26. Bottom-up Chemoenzymatic Synthesis Towards Novel Fluorinated Cellulose-like Materials
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László Fábián, Marcus A. Johns, Peterson de Andrade, Robert A. Field, Dinu Iuga, Robert L. Harniman, Yaroslav Z. Khimyak, Rinat Nigmatullin, Jesús Angulo, Valeria Gabrielli, Juan Munoz, Giulia Pergolizzi, Sergey A. Nepogodiev, and Stephen J. Eichhorn
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Aqueous solution ,Materials science ,010405 organic chemistry ,chemistry.chemical_element ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Characterization (materials science) ,chemistry.chemical_compound ,Crystallinity ,Chemical engineering ,chemistry ,Cellodextrin ,Fluorine ,Soft matter ,Cellulose - Abstract
Understanding the fine details of self-assembly of building blocks into complex hierarchical structures represents a major challenge en route to the design and preparation of soft matter materials with specific properties. Enzymatically-synthesised cellodextrins are known to have limited water solubility beyond DP9, a point at which they self-assemble into particles resembling the anti-parallel cellulose II crystalline packing. We have prepared and characterized a series of site-selectively fluorinated cellodextrins of different degrees of fluorination and substitution patterns by chemoenzymatic synthesis. The structural characterization of these materials at different length scales, combining advanced NMR and microscopy methods, showed that multiply 6-fluorinated cellodextrin chains assembled into particles presenting morphological and crystallinity features that are unprecedented for cellulose-like materials. In contrast, the introduction of a single fluorine atom per cellodextrin chain had a minor impact on materials structure. Our work emphasizes the strength of combining chemoenzymatic synthesis, fluorinated building blocks and advanced NMR and microscopy methods for the thorough characterization of hierarchical structures, leading to the controlled design of new biomaterials with specific properties.
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- 2020
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27. High molecular weight mixed-linkage glucan as a mechanical and hydration modulator of bacterial cellulose: Characterization by advanced NMR spectroscopy
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Andrew N. Round, Todor Koev, Dinu Iuga, Haider Hussain, P.A. Gunning, Deirdre Mikkelsen, Kendall R. Corbin, Valeria Gabrielli, Juan C. Muñoz-García, Frederick J. Warren, and Yaroslav Z. Khimyak
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Magnetic Resonance Spectroscopy ,Polymers and Plastics ,Biocompatibility ,Bioengineering ,02 engineering and technology ,Microscopy, Atomic Force ,010402 general chemistry ,01 natural sciences ,Biomaterials ,chemistry.chemical_compound ,Personal hygiene ,Materials Chemistry ,Bound water ,Cellulose ,Glucans ,Mechanical Phenomena ,Glucan ,chemistry.chemical_classification ,Bacteria ,Hydrogels ,021001 nanoscience & nanotechnology ,Mixed-linkage glucan ,0104 chemical sciences ,Molecular Weight ,Xyloglucan ,chemistry ,Chemical engineering ,Bacterial cellulose ,Self-healing hydrogels ,Xylans ,0210 nano-technology - Abstract
Bacterial cellulose (BC) consists of a complex three-dimensional organization of ultrafine fibers which provide unique material properties such as softness, biocompatibility, and water-retention ability, of key importance for biomedical applications. However, there is a poor understanding of the molecular features modulating the macroscopic properties of BC gels. We have examined chemically pure BC hydrogels and composites with arabinoxylan (BC-AX), xyloglucan (BC-XG), and high molecular weight mixed-linkage glucan (BC-MLG). Atomic force microscopy showed that MLG greatly reduced the mechanical stiffness of BC gels, while XG and AX did not exert a significant effect. A combination of advanced solid-state NMR methods allowed us to characterize the structure of BC ribbons at ultra-high resolution and to monitor local mobility and water interactions. This has enabled us to unravel the effect of AX, XG, and MLG on the short-range order, mobility, and hydration of BC fibers. Results show that BC-XG hydrogels present BC fibrils of increased surface area, which allows BC-XG gels to hold higher amounts of bound water. We report for the first time that the presence of high molecular weight MLG reduces the density of clusters of BC fibrils and dramatically increases water interactions with BC. Our data supports two key molecular features determining the reduced stiffness of BC-MLG hydrogels, that is, (i) the adsorption of MLG on the surface of BC fibrils precluding the formation of a dense network and (ii) the preorganization of bound water by MLG. Hence, we have produced and fully characterized BC-MLG hydrogels with novel properties which could be potentially employed as renewable materials for applications requiring high water retention capacity (e.g. personal hygiene products).
- Published
- 2019
28. Self-Correcting Method for the Measurement of Free Calcium and Magnesium Concentrations by
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Matthew, Wallace, Thomas, Hicks, Yaroslav Z, Khimyak, and Jesús, Angulo
- Abstract
A method for the direct measurement of free Ca
- Published
- 2019
29. Halogen effects on the solid-state packing of phenylalanine derivatives and the resultant gelation properties
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Yaroslav Z. Khimyak, Hayley R. Green, Margaux Heinrich, Karol P. Nartowski, Gareth O. Lloyd, Peter C. Martin, Susana M. Ramalhete, and Jamie S. Foster
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inorganic chemicals ,chemistry.chemical_classification ,010405 organic chemistry ,Chemistry ,Solid-state ,Phenylalanine ,Crystal structure ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,0104 chemical sciences ,Phenylalanine derivatives ,Amino acid ,Human health ,Halogen ,Organic chemistry ,Physical and Theoretical Chemistry - Abstract
Phenylalanine is an important amino acid both biologically, essential to human health, and industrially, as a building block of artificial sweeteners. Our interest in this particular amino acid and its derivatives lies with its ability to form gels in a number of solvents. We present here the studies of the influence of halogen addition to the aromatic ring on the gelation properties and we analyse the crystal structures of a number of these materials to elucidate the trends in their behaviour based on the halogen addition to the aromatic group and the interactions that result.
- Published
- 2017
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30. 19F NMR Spectroscopy as a Highly Sensitive Method for the Direct Monitoring of Confined Crystallization within Nanoporous Materials
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Lucy E. Hawarden, Dinu Iuga, Juraj Sibik, Diksha Malhotra, László Fábián, Karol P. Nartowski, Yaroslav Z. Khimyak, and J. Axel Zeitler
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Materials science ,Nanoporous ,Nanotechnology ,Context (language use) ,02 engineering and technology ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Nanoreactor ,Mesoporous silica ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Catalysis ,0104 chemical sciences ,law.invention ,Nanocrystal ,law ,Phase (matter) ,Crystallization ,0210 nano-technology - Abstract
The introduction of fluorine into the structure of pharmaceuticals has been an effective strategy for tuning their pharmacodynamic properties, with more than 40 new drugs entering the market in the last 15 years. In this context, (19) F NMR spectroscopy can be viewed as a useful method for investigating the host-guest chemistry of pharmaceuticals in nanosized drug-delivery systems. Although the interest in confined crystallization, nanosized devices, and porous catalysts is gradually increasing, understanding of the complex phase behavior of organic molecules confined within nanochambers or nanoreactors is still lacking. Using (19) F magic-angle-spinning NMR spectroscopy, we obtained detailed mechanistic insight into the crystallization of flufenamic acid (FFA) in a confined environment of mesoporous silica materials with different pore diameters (3.2-29 nm), providing direct experimental evidence for the formation of a molecular-liquid-like layer besides crystalline confined FFA form I.
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- 2016
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31. 19F NMR Spectroscopy as a Highly Sensitive Method for the Direct Monitoring of Confined Crystallization within Nanoporous Materials
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Karol P. Nartowski, Diksha Malhotra, Lucy E. Hawarden, Juraj Sibik, Dinu Iuga, J. Axel Zeitler, László Fábián, and Yaroslav Z. Khimyak
- Subjects
02 engineering and technology ,General Medicine ,010402 general chemistry ,021001 nanoscience & nanotechnology ,0210 nano-technology ,01 natural sciences ,0104 chemical sciences - Abstract
Introduction of fluorine in the structure of pharmaceuticals has been an effective strategy for tuning their pharmacodynamic properties with more than 40 new drugs accessing the market in last 15 years. In this context 19F NMR can be viewed as a useful probe for investigating the host-guest chemistry of pharmaceuticals in nanosize drug delivery systems. Although the interest in confined crystallisation, nanosize devices and porous catalysts is gradually increasing, understanding of the complex phase behavior of organic molecules confined within nano-chambers or nano-reactors is still lacking. Using 19F MAS NMR, we achieved detailed mechanistic insight into the crystallization of flufenamic acid (FFA) in a confined environment of mesoporous silicas with different pore diameters (3.2 to 29 nm), providing a direct experimental proof of the formation of a molecular liquid-like layer in addition to the crystalline confined FFA form I.
- Published
- 2016
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32. Thermosensitive supramolecular and colloidal hydrogels via self-assembly modulated by hydrophobized cellulose nanocrystals
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Anna E. Lewandowska, Juan C. Muñoz-García, Jesús Angulo, Yaroslav Z. Khimyak, Valeria Gabrielli, Robert L. Harniman, Rinat Nigmatullin, and Stephen J. Eichhorn
- Subjects
Materials science ,Polymers and Plastics ,Supramolecular chemistry ,Nanoparticle ,02 engineering and technology ,macromolecular substances ,engineering.material ,Bristol Composites Institute ACCIS ,010402 general chemistry ,01 natural sciences ,complex mixtures ,Hydrophobic effect ,Amphiphile ,Thermoresponsive ,chemistry.chemical_classification ,Cellulose nanocrystals ,technology, industry, and agriculture ,Hydroxypropyl methylcellulose ,Polymer ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,body regions ,Hydrogel ,chemistry ,Chemical engineering ,Self-healing hydrogels ,engineering ,Self-assembly ,Biopolymer ,0210 nano-technology - Abstract
Utilization of reversible non-covalent interactions is a versatile design strategy for the development of stimuli responsive soft materials. In this study, hydrophobic interactions were harnessed to assemble water-soluble macromolecules and nanoparticles into a transient hybrid network forming thermosensitive hydrogels with tunable rheological properties. Hybrid hydrogels were built of biopolymer derived components: cellulose nanocrystals (CNCs), nanoparticles of high aspect ratio, and hydroxypropyl methylcellulose (HPMC). To enable polymer/CNC assembly via hydrophobic interactions, the surface of highly hydrophilic CNCs was modified by binding octyl moieties (octyl-CNCs). The amphiphilicity of octyl-CNCs was confirmed by surface tension measurements. The molecular and particulate amphiphiles assemble into hybrid networks, which result in stiffer and stronger hydrogels compared to HPMC hydrogels and hydrogels reinforced with hydrophilic CNCs. Hybrid hydrogels retain the ability of HPMC hydrogels to flow under applied shear stress. However, significantly higher viscosity was achieved for HPMC/octyl-CNCs compared with HPMC/CNCs hydrogels. The inherent thermal response of rheological properties of HPMC hydrogels was further amplified in combination with octyl-CNCs due to temperature-induced polymer/nanoparticle association via hydrophobic interactions. Saturation transfer difference NMR spectroscopy demonstrated the growth of network-bound water with an increase in temperature, which correlates with the increase of stiffness and viscosity of hydrogels upon heating. Rheological properties of these hybrid hydrogels are defined by the content of the soluble polymer and the CNCs, and it is shown that they can be finely adjusted for a required application.
- Published
- 2019
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33. Spatially Resolved STD-NMR Applied to the Study of Solute Transport in Biphasic Systems: Application to Protein-Ligand Interactions
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Juan C. Muñoz–García, Ridvan Nepravishta, Yaroslav Z. Khimyak, Jesús Angulo, Serena Monaco, and Universidad de Sevilla. Departamento de Química orgánica
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Pharmacology ,010405 organic chemistry ,Chemistry ,SR-STD NMR ,Spatially resolved ,Plant Science ,General Medicine ,Nuclear magnetic resonance spectroscopy ,Interface ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Magnetization ,Complementary and alternative medicine ,Chemical physics ,Phase (matter) ,Drug Discovery ,Proton NMR ,Diffusion (business) ,Saturation (chemistry) ,1 H-NMR ,Biphasic system ,CEST ,Protein ligand - Abstract
Fluid biphasic systems are one of the most interesting dynamic systems in chemistry and biochemistry. In nuclear magnetic resonance (NMR) spectroscopy, the study of the solute dynamics across fluid biphasic systems requires the introduction of dedicated NMR methods, due to their intrinsic heterogeneity. Diffusion and spatially resolved NMR techniques represent a useful approach for dealing with the study of solutes in biphasic systems and have been applied lately with success. Nevertheless, other potential applications of NMR spectroscopy for biphasic systems remain to be explored. In this proof of-concept communication, we specifically aimed to investigate whether solute exchange between two immiscible phases can be followed by NMR experiments involving transfer of magnetization. To that aim, we have used spatially resolved saturation transfer difference NMR (SR-STD NMR) experiments to analyze solute exchange by transfer of saturation from one phase to the other in a biphasic system and have explored which are the underlying mechanisms leading to the transfer of magnetization between phases and the limits of the approach. We hereby demonstrate that SR-STD NMR is feasible and that it might be implemented in pharmacological screening for binders of biological receptors or in the study of chemical and biochemical reactions occurring at interfaces.
- Published
- 2019
34. Surfactant controlled zwitterionic cellulose nanofibril dispersions
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Vincenzo Calabrese, Karen J. Edler, Valeria Gabrielli, Juan C. Muñoz-García, Marcelo A. da Silva, Janet L. Scott, Jesús Angulo, Yaroslav Z. Khimyak, Julien Schmitt, and Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK
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Flocculation ,Chemistry ,Cationic polymerization ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Small-angle neutron scattering ,0104 chemical sciences ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,chemistry.chemical_compound ,Isoelectric point ,Pulmonary surfactant ,Chemical engineering ,Cellulose ,Sodium dodecyl sulfate ,0210 nano-technology ,Dispersion (chemistry) - Abstract
International audience; Zwitterionic cellulose nanofibrils (ZCNFs) with an isoelectric point of 3.4 were obtained by grafting glycidyltrimethylammonium chloride onto TEMPO/NaBr/NaOCl-oxidised cellulose nanofibrils. The ZCNF aqueous dispersions were characterized via transmission electron microscopy, rheology and small angle neutron scattering, revealing a fibril-bundle structure with pronounced aggregation at pH 7. Surfactants were successfully employed to tune the stability of the ZCNF dispersions. Upon addition of the anionic surfactant, sodium dodecyl sulfate, the ZCNF dispersion shows individualized fibrils due to electrostatic stabilization. In contrast, upon addition of the cationic species dodecyltrimethylammonium bromide, the dispersion undergoes charge neutralization, leading to more pronounced flocculation.
- Published
- 2018
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35. Luminescent SiO2 nanoparticles for cell labeling: combined water dispersion polymerization and 3D condensation controlled by oligoperoxide surfactant-initiator
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Rostyslav Stoika, Alexander Zaichenko, Olga Klyuchivska, Zoryana Nadashkevich, Catherine Cropper, Valentina Glazunova, Orest Hevus, Yaroslav Z. Khimyak, Nataliya Mitina, and Khrystyna Harhay
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chemistry.chemical_classification ,Dispersion polymerization ,Condensation polymer ,Polymers and Plastics ,Biocompatibility ,Organic Chemistry ,technology, industry, and agriculture ,General Physics and Astronomy ,02 engineering and technology ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Methacrylate ,01 natural sciences ,0104 chemical sciences ,Rhodamine 6G ,chemistry.chemical_compound ,chemistry ,Polymerization ,Chemical engineering ,Materials Chemistry ,0210 nano-technology ,Curing (chemistry) - Abstract
Hybrid polymer coated silica nanoparticles (NPs) were synthesized using low temperature graft (co)polymerization of trimethoxysilane propyl methacrylate (MPTS) initiated by surface-active oligoperoxide metal complex (OMC) in aqueous media. These NPs were characterized by means of kinetic, solid-state NMR, TEM and FTIR techniques. Two processes, namely the radical graft-copolymerization due to presence of double bonds and 3D polycondensation provided by the intra- or/and intermolecular interaction of organosilicic fragments, occurred simultaneously. The relative contribution of the reactions depending on initiator concentration and pH value leading to the formation of low cured polydisperse microparticles or OMC coated SiO2 NPs of controlled curing degree was studied. The availability of free-radical forming peroxide fragments on the surface of SiO2 NPs provides an opportunity for seeded polymerization leading to the formation of the functional polymer coated NPs with controlled particle structure, size, and functionality. Encapsulation of the luminescent dye (Rhodamine 6G) in SiO2 core of functionalized NPs provided a noticeable increase in their resistance to photo-bleaching and improved biocompatibility. These luminescent NPs were not only attached to murine leukemia L1210 cells but also tolerated by the mammalian cells. Their potential use for labeling of the mammalian cells is considered.
- Published
- 2018
36. Mechanically Robust Gels Formed from Hydrophobized Cellulose Nanocrystals
- Author
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Jesús Angulo, Yaroslav Z. Khimyak, Rinat Nigmatullin, Valeria Gabrielli, Juan C. Muñoz-García, Robert L. Harniman, and Stephen J. Eichhorn
- Subjects
Materials science ,Starch ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Supramolecular assembly ,Hydrophobic effect ,chemistry.chemical_compound ,Sulfation ,Rheology ,General Materials Science ,Atomic force microscopy ,starch ,cellulose nanocrystals (CNCs) ,technology, industry, and agriculture ,gels ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Cellulose nanocrystals ,adhesive force ,Chemical engineering ,chemistry ,Self-healing hydrogels ,rheology ,lipids (amino acids, peptides, and proteins) ,0210 nano-technology - Abstract
Cellulose nanocrystals (CNCs) that bind to each other through associative hydrophobic interactions have been synthesized by modifying sulfated CNCs (sCNCs) with hydrophobic moieties. These octyl-CNCs form gels at significantly lower concentrations than parent sCNCs, producing extremely strong hydrogels. Unlike sCNCs, these octyl-CNCs do not form ordered liquid crystalline phases indicating a random association into a robust network driven by hydrophobic interactions. Furthermore, involvement of the octyl-CNCs into multicomponent supramolecular assembly was demonstrated in combination with starch. AFM studies confirm favorable interactions between starch and octyl-CNCs, which is thought to be the source of the dramatic increase in gel strength.
- Published
- 2018
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37. Prediction of Hydrate and Solvate Formation Using Statistical Models
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László Fábián, Yaroslav Z. Khimyak, and Khaled Takieddin
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Chloroform ,010405 organic chemistry ,Hydrogen bond ,Statistical model ,General Chemistry ,010402 general chemistry ,Condensed Matter Physics ,Branching (polymer chemistry) ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Computational chemistry ,Molecular descriptor ,Molecule ,Organic chemistry ,General Materials Science ,Hydrate ,Dichloromethane - Abstract
Novel, knowledge based models for the prediction of hydrate and solvate formation are introduced, which require only the molecular formula as input. A data set of more than 19 000 organic, nonionic, and nonpolymeric molecules was extracted from the Cambridge Structural Database. Molecules that formed solvates were compared with those that did not using molecular descriptors and statistical methods, which allowed the identification of chemical properties that contribute to solvate formation. The study was conducted for five types of solvates: ethanol, methanol, dichloromethane, chloroform, and water solvates. The identified properties were all related to the size and branching of the molecules and to the hydrogen bonding ability of the molecules. The corresponding molecular descriptors were used to fit logistic regression models to predict the probability of any given molecule to form a solvate. The established models were able to predict the behavior of ∼80% of the data correctly using only two descriptors in the predictive model.
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- 2015
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38. Unravelling cationic cellulose nanofibril hydrogel structure: NMR spectroscopy and small angle neutron scattering analyses
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Rhea Soni, Janet L. Scott, Susana M. Ramalhete, Yaroslav Z. Khimyak, James C. Courtenay, Karen J. Edler, and William J. Skuze
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Aqueous solution ,Materials science ,Spin–lattice relaxation ,02 engineering and technology ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Small-angle neutron scattering ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Rheology ,Chemical engineering ,Self-healing hydrogels ,Cellulose ,0210 nano-technology ,Elastic modulus - Abstract
Stiff, elastic, viscous shear thinning aqueous gels are formed upon dispersion of low weight percent concentrations of cationically modified cellulose nanofibrils (CCNF) in water. CCNF hydrogels produced from cellulose modified with glycidyltrimethylammonium chloride, with degree of substitution (DS) in the range 10.6(3)–23.0(9)%, were characterised using NMR spectroscopy, rheology and small angle neutron scattering (SANS) to probe the fundamental form and dimensions of the CCNF and to reveal interfibrillar interactions leading to gelation. As DS increased CCNF became more rigid as evidenced by longer Kuhn lengths, 18–30 nm, derived from fitting of SANS data to an elliptical cross-section, cylinder model. Furthermore, apparent changes in CCNF cross-section dimensions suggested an “unravelling” of initially twisted fibrils into more flattened ribbon-like forms. Increases in elastic modulus (7.9–62.5 Pa) were detected with increased DS and 1H solution-state NMR T1 relaxation times of the introduced surface –N+(CH3)3 groups were found to be longer in hydrogels with lower DS, reflecting the greater flexibility of the low DS CCNF. This is the first time that such correlation between DS and fibrillar form and stiffness has been reported for these potentially useful rheology modifiers derived from renewable cellulose.
- Published
- 2018
39. The Plot Thickens: Gelation by Phenylalanine in Water and Dimethyl Sulfoxide
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Peter C. Martin, Karol P. Nartowski, Gareth O. Lloyd, Mark D. Eddleston, Jamie S. Foster, Margaux Heinrich, Yaroslav Z. Khimyak, Susana M. Ramalhete, Graeme M. Day, and Hayley R. Green
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chemistry.chemical_classification ,Dimethyl sulfoxide ,Phenylalanine ,02 engineering and technology ,General Chemistry ,Crystal structure ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,law.invention ,Crystal structure prediction ,Amino acid ,Crystal ,chemistry.chemical_compound ,chemistry ,law ,Organic chemistry ,F100 Chemistry ,General Materials Science ,Self-assembly ,Crystallization ,0210 nano-technology - Abstract
Phenylalanine (Phe) is an amino acid of great interest as coupling of an aromatic group with a chiral hydrophilic region imparts a number of unique properties. Recently there has been an increased interest in the crystalline and gel forms of this compound, part as a result of the complex and undetermined structures of the resulting materials and the relationship of the solid forms of Phe with the disease phenylketonuria. In this report, we highlight the relationship between gelation, crystallization, and the dynamics of self-assembly processes of Phe. We do this by describing the gelation of the amino acid, the gel to crystal relationship, crystal structure predictions for this relatively simple compound, and the dynamics of assembly as determined by NMR in both water and dimethyl sulfoxide. This will provide guidance to future research into Phe assemblies, possible treatments for phenylketonuria, and diseases related to formation of amyloid-like fibers.
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- 2017
40. Towards understanding phase transitions of confined pharmaceuticals
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László Fábián, Yaroslav Z. Khimyak, Karol P. Nartowski, Alexander Morritt, and Natalia Janczura
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Inorganic Chemistry ,Phase transition ,Materials science ,Chemical physics ,Structural Biology ,General Materials Science ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,Biochemistry - Published
- 2019
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41. Understanding the role of molecular mobility in phase transitions of bulk and confined pharmaceuticals
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László Fábián, Yaroslav Z. Khimyak, Karol P. Nartowski, and Alexander Morritt
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Inorganic Chemistry ,Phase transition ,Materials science ,Structural Biology ,Chemical physics ,General Materials Science ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,Biochemistry - Published
- 2019
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42. Understanding self-assembly of molecular organic solids using NMR crystallography: from multicomponent solids to supramolecular hydrogels
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Yaroslav Z. Khimyak
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Inorganic Chemistry ,Materials science ,Chemical engineering ,Supramolecular hydrogels ,Structural Biology ,General Materials Science ,Self-assembly ,Physical and Theoretical Chemistry ,Solid material ,Condensed Matter Physics ,Biochemistry - Published
- 2019
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43. Supramolecular Amino Acid Based Hydrogels: Probing the Contribution of Additive Molecules using NMR Spectroscopy
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Susana M, Ramalhete, Karol P, Nartowski, Nichola, Sarathchandra, Jamie S, Foster, Andrew N, Round, Jesús, Angulo, Gareth O, Lloyd, and Yaroslav Z, Khimyak
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STD NMR ,Magnetic Resonance Spectroscopy ,NMR spectroscopy ,Full Paper ,Amino Acids, Basic ,additive molecules ,Microscopy, Electron, Scanning ,Hydrogels ,self-assembly ,Full Papers ,Supramolecular Chemistry | Hot Paper ,Microscopy, Atomic Force ,supramolecular chemistry - Abstract
Supramolecular hydrogels are composed of self‐assembled solid networks that restrict the flow of water. l‐Phenylalanine is the smallest molecule reported to date to form gel networks in water, and it is of particular interest due to its crystalline gel state. Single and multi‐component hydrogels of l‐phenylalanine are used herein as model materials to develop an NMR‐based analytical approach to gain insight into the mechanisms of supramolecular gelation. Structure and composition of the gel fibres were probed using PXRD, solid‐state NMR experiments and microscopic techniques. Solution‐state NMR studies probed the properties of free gelator molecules in an equilibrium with bound molecules. The dynamics of exchange at the gel/solution interfaces was investigated further using high‐resolution magic angle spinning (HR‐MAS) and saturation transfer difference (STD) NMR experiments. This approach allowed the identification of which additive molecules contributed in modifying the material properties.
- Published
- 2017
44. Structure and Mobility of Lactose in Lactose/Sodium Montmorillonite Nanocomposites
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Karol P. Nartowski, Joel Hellrup, Yaroslav Z. Khimyak, Denny Mahlin, and Michael Holmboe
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Isothermal microcalorimetry ,Solid-state chemistry ,Scanning electron microscope ,Sodium ,chemistry.chemical_element ,Lactose ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Nanocomposites ,chemistry.chemical_compound ,Differential scanning calorimetry ,X-Ray Diffraction ,Electrochemistry ,Organic chemistry ,General Materials Science ,Spectroscopy ,Nanocomposite ,Surfaces and Interfaces ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,0104 chemical sciences ,Montmorillonite ,chemistry ,Chemical engineering ,Bentonite ,0210 nano-technology - Abstract
This study aims at investigating the molecular level organization and molecular mobility in montmorillonite nanocomposites with the uncharged organic low-molecular-weight compound lactose commonly used in pharmaceutical drug delivery, food technology, and flavoring. Nanocomposites were prepared under slow and fast drying conditions, attained by drying at ambient conditions and by spray-drying, respectively. A detailed structural investigation was performed with modulated differential scanning calorimetry, powder X-ray diffraction, solid-state nuclear magnetic resonance spectroscopy, scanning electron microscopy, microcalorimetry, and molecular dynamics simulations. The lactose was intercalated in the sodium montmorillonite interlayer space regardless of the clay content, drying rate, or humidity exposure. Although, the spray-drying resulted in higher proportion of intercalated lactose compared with the drying under ambient conditions, nonintercalated lactose was present at 20 wt % lactose content and above. This indicates limitations in maximum loading capacity of nonionic organic substances into the montmorillonite interlayer space. Furthermore, a fraction of the intercalated lactose in the co-spray-dried nanocomposites diffused out from the clay interlayer space upon humidity exposure. Also, the lactose in the nanocomposites demonstrated higher molecular mobility than that of neat amorphous lactose. This study provides a foundation for understanding functional properties of lactose/Na-MMT nanocomposites, such as loading capacity and physical stability.
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- 2016
45. Correction: Substituent interference on supramolecular assembly in urea gelators: synthesis, structure prediction and NMR
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Francesca Piana, David H. Case, Susana M. Ramalhete, Giuseppe Pileio, Marco Facciotti, Graeme M. Day, Yaroslav Z. Khimyak, Jesús Angulo, Richard C. D. Brown, and Philip A. Gale
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General Chemistry ,Condensed Matter Physics - Abstract
Correction for ‘Substituent interference on supramolecular assembly in urea gelators: synthesis, structure prediction and NMR’ by Francesca Piana et al., Soft Matter, 2016, 12, 4034–4043.
- Published
- 2016
46. Assembly of α-Glucan by GlgE and GlgB in Mycobacteria and Streptomycetes
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Karol P. Nartowski, Sibyl F. D. Batey, Kim Findlay, Hendrik Koliwer-Brandl, Yaroslav Z. Khimyak, Abdul M. Rashid, Stephen Bornemann, J. Elaine Barclay, Rainer Kalscheuer, Karl Syson, and Farzana Miah
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0301 basic medicine ,Magnetic Resonance Spectroscopy ,Stereochemistry ,Streptomycetaceae ,Degree of polymerization ,Branching (polymer chemistry) ,Biochemistry ,Oligomer ,Mycobacterium ,03 medical and health sciences ,chemistry.chemical_compound ,Glycogen branching enzyme ,Transferase ,Glucans ,chemistry.chemical_classification ,Sugar phosphates ,030102 biochemistry & molecular biology ,biology ,Electrophoresis, Capillary ,biology.organism_classification ,030104 developmental biology ,chemistry ,Glucosyltransferases ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,biology.protein ,Sugar Phosphates - Abstract
Actinomycetes, such as mycobacteria and streptomycetes, synthesize α-glucan with α-1,4 linkages and α-1,6 branching to help evade immune responses and to store carbon. α-Glucan is thought to resemble glycogen except for having shorter constituent linear chains. However, the fine structure of α-glucan and how it can be defined by the maltosyl transferase GlgE and branching enzyme GlgB were not known. Using a combination of enzymolysis and mass spectrometry, we compared the properties of α-glucan isolated from actinomycetes with polymer synthesized in vitro by GlgE and GlgB. We now propose the following assembly mechanism. Polymer synthesis starts with GlgE and its donor substrate, α-maltose 1-phosphate, yielding a linear oligomer with a degree of polymerization (∼16) sufficient for GlgB to introduce a branch. Branching involves strictly intrachain transfer to generate a C chain (the only constituent chain to retain its reducing end), which now bears an A chain (a nonreducing end terminal branch that does not itself bear a branch). GlgE preferentially extends A chains allowing GlgB to act iteratively to generate new A chains emanating from B chains (nonterminal branches that themselves bear a branch). Although extension and branching occur primarily with A chains, the other chain types are sometimes extended and branched such that some B chains (and possibly C chains) bear more than one branch. This occurs less frequently in α-glucans than in classical glycogens. The very similar properties of cytosolic and capsular α-glucans from Mycobacterium tuberculosis imply GlgE and GlgB are sufficient to synthesize them both.
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- 2016
47. Tuning the spontaneous formation kinetics of caffeine : malonic acid co-crystals
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David J. Berry, Karol P. Nartowski, and Yaroslav Z. Khimyak
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Inorganic chemistry ,Kinetics ,Crystal growth ,02 engineering and technology ,General Chemistry ,Malonic acid ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Organic chemistry ,General Materials Science ,Relative humidity ,0210 nano-technology ,Caffeine - Abstract
It has previously been reported that the caffeine : malonic acid co-crystal system forms spontaneously upon the contact of the two materials. Here we studied the crystal growth in this system to rationally define the role that water plays, thus enabling us to monitor the conversion by solid-state NMR and control the kinetics of spontaneous co-crystal production by increasing or decreasing the relative humidity.
- Published
- 2016
48. Substituent interference on supramolecular assembly in urea gelators: synthesis, structure prediction and NMR
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Richard C. D. Brown, Susana M. Ramalhete, Francesca Piana, Graeme M. Day, David H. Case, Giuseppe Pileio, M. Facciotti, Jesús Angulo, Yaroslav Z. Khimyak, and Philip A. Gale
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chemistry.chemical_classification ,Chemistry ,Hydrogen bond ,Supramolecular chemistry ,Substituent ,Nanotechnology ,02 engineering and technology ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Crystal structure prediction ,Supramolecular assembly ,Crystallography ,chemistry.chemical_compound ,Molecule ,0210 nano-technology ,Alkyl - Abstract
Eighteen N-aryl-N'-alkyl urea gelators were synthesised in order to understand the effect of head substituents on gelation performance. Minimum gelation concentration values obtained from gel formation studies were used to rank the compounds and revealed the remarkable performance of 4-methoxyphenyl urea gelator 15 in comparison to 4-nitrophenyl analogue 14, which could not be simply ascribed to substituent effects on the hydrogen bonding capabilities of the urea protons. Crystal structure prediction calculations indicated alternative low energy hydrogen bonding arrangements between the nitro group and urea protons in gelator 14, which were supported experimentally by NMR spectroscopy. As a consequence, it was possible to relate the observed differences to interference of the head substituents with the urea tape motif, disrupting the order of supramolecular packing. The combination of unbiased structure prediction calculations with NMR is proposed as a powerful approach to investigate the supramolecular arrangement in gel fibres and help understand the relationships between molecular structure and gel formation.
- Published
- 2016
49. Hydrogenation of nitrobenzene over Pd/C catalysts prepared from molecular carbonyl–phosphine palladium clusters
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Yaroslav Z. Khimyak, Sophie Hermans, Michel Devillers, Christopher Willocq, and Vincent Dubois
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Process Chemistry and Technology ,Inorganic chemistry ,chemistry.chemical_element ,Nanoparticle ,Catalysis ,Nitrobenzene ,chemistry.chemical_compound ,Aniline ,chemistry ,Chemisorption ,Surface modification ,Physical and Theoretical Chemistry ,Phosphine ,Palladium - Abstract
Molecular phosphine–carbonyl palladium clusters were anchored onto a phosphine-functionalized carbon support (CPPh2) by ligand exchange. This support was characterized by solid-state NMR prior to reaction with the clusters. The same clusters were also deposited on the non-functionalized support (CSX+). Characterization by SEM and XPS showed that the surface was more uniform when using the functionalized support. After thermal activation, the Pd/C materials obtained were characterized by CO chemisorption, XPS, SEM, TEM, powder XRD and analyzed for metal loading by ICP-OES. Again, the solids prepared with the functionalized support presented a more uniform surface. TEM indicated that small nanoparticles (1–10 nm) were present on the surface with narrow size distributions. The activated Pd/C materials proved to be efficient catalysts for the hydrogenation of nitrobenzene into aniline. They were competitive with commercial and literature catalysts. Moreover, the catalysts prepared using the functionalized support were more active and more stable than when using CSX+.
- Published
- 2012
- Full Text
- View/download PDF
50. Branching out with aminals: microporous organic polymers from difunctional monomers
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Dave J. Adams, Andrea Laybourn, Robert Dawson, Yaroslav Z. Khimyak, Rob Clowes, Jonathan A. Iggo, and Andrew I. Cooper
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chemistry.chemical_classification ,Condensation polymer ,Polymers and Plastics ,Organic Chemistry ,Bioengineering ,Polymer ,Microporous material ,Branching (polymer chemistry) ,Biochemistry ,MOPS ,chemistry.chemical_compound ,Monomer ,chemistry ,Polymer chemistry ,Organic chemistry - Abstract
Microporous organic polymers (MOPs) have been prepared via one-pot polycondensation reactions between aldehydes and amines. Primary amines were reacted with imines to produce porous polymers from A2 + B2 monomer combinations. The resulting networks exhibit BET surface areas in the range 500–600 m2 g−1. This approach opens up the possibility of synthesising MOPs using readily-available and inexpensive precursors.
- Published
- 2012
- Full Text
- View/download PDF
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