49 results on '"Yanhong Qi"'
Search Results
2. Methanogenic Community Characteristics and Its Influencing Factors in Reservoir Sediments on the Northeastern Qinghai Plateau
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Zebi Liu, Xufeng Mao, Yi Wu, Liang Xia, Hongyan Yu, Wenjia Tang, Yanhong Qi, Ziping Zhang, Feng Xiao, and Haichuan Ji
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CH4 ,Qinghai Plateau ,co-occurrence network ,mantel analysis ,FAPROTAX ,Biology (General) ,QH301-705.5 - Abstract
Reservoirs are a hotspot for methane emissions, a potent greenhouse gas. However, the microbial basis for methane production in the Qinghai Plateau reservoirs remains unclear. To explore the characteristics of methanogenic communities in reservoir sediments on the northeastern Qinghai Plateau, sediment samples were collected from 18 reservoirs in the Yellow River basin during May 2023 (dry season) and August 2023 (wet season). High-throughput sequencing technology was employed to analyze the community composition, diversity, and co-occurrence network of methanogens. Furthermore, FAPROTAX and Mantel analysis were used to assess the metabolic functions of methanogens and their influencing factors. The results showed that (1) the predominant genera of methanogens were Methanobacterium (28.87%) and Methanosarcina (21.67%). Hydrogenotrophic methanogenesis was the main pathway in the sediments. (2) Significant spatiotemporal differences were observed in the diversity of methanogenic communities (p < 0.05). The composition and diversity of these communities were found to be significantly influenced by temperature, pH, altitude, organic carbon, and total nitrogen (p < 0.05). (3) Methanosarcina, Methanobacterium, and Methanospirillum play crucial roles in maintaining the stability of methanogenic community networks. The co-occurrence network nodes are predominantly positively correlated (99.82%). These results provide data for further studies on carbon cycling in the Qinghai Plateau reservoirs.
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- 2024
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3. Construction and analysis of acupoint network with functional similarity in Traditional Chinese Medicine
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WenJun Zhang and YanHong Qi
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acupoint network ,acupoints ,indications and clinical applications ,functional similarity ,point correlation ,degree centrality ,network topology ,tcm ,Biology (General) ,QH301-705.5 - Abstract
In this study, we constructed the data table of acupoint functions (i.e., acupoint indications and clinical applications) based on the previously developed information system of acupoint diagnosis and treatment in Traditional Chinese Medicine. Based on the data table of acupoint functions, between-acupoint point correlations were calculated. Acupoints with statistically significant point correlations were linked to construct the acupoint network with functional similarity. The degree centrality values of acupoints (totally 311 acupoints) showed that the acupoints Zhengying (GB17), Qinglengyuan (SJ11), Jiaji (EX-B2), etc. have the highest degree centrality values. Most of these acupoints are located on the head and neck, and their functions are universal. The acupoints Yinbai (SP1) and Zhongkui (EX-UE4) have strong specific functions and weak substitutability. The results of frequency distribution, skewness, aggregation index, coefficient of variation, entropy, and probability distributions showed that the obtained acupoint network is a scale-free complex network. Among them, the probability density function of the power law distribution is p(x)=x^(-6.1818), x≥36.
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- 2023
4. A comprehensive risk assessment system for probabilistic problems
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WenJun Zhang, YanHong Qi, and Xin Li
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risk assessment ,plans ranking ,probability ,risk and benefit ,optimal mix proportion ,matlab ,Technology (General) ,T1-995 ,Science - Abstract
In present study we provided a comprehensive risk assessment system. The system consists of four representative methods, namely probability-deterministic assessment, probability-interval assessment, probability-ranking assessment, and probability-ranking with optimal mix strategy. Among them, the probability-interval assessment was proposed by us. In the risk assessment, there are multiple available states, but only one of them can occur in nature. The occurrence probability of each state is the determined value and interval respectively for the first two methods; and for the latter two methods it is the probability difference of each pair of adjacent states. Known the benefit matrix, plans ranking can be derived from the first three methods according to the expected benefit; the fourth method can be used to obtain the optimal mix proportion of plans. The Matlab full code of the assessment system was given for further application and improvement.
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- 2023
5. Information system of acupoint diagnosis and treatment in Traditional Chinese Medicine
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WenJun Zhang and YanHong Qi
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information system ,online query ,acupoints ,acupuncture and moxibustion ,massage ,Biology (General) ,QH301-705.5 - Abstract
In this study we developed an information system of acupoint diagnosis and treatment for Traditional Chinese Medicine (ISADTTHM). In this system, there are 311 acupoints, about 600 acupoint indications and clinical applications, 12 meridians, 8 extra meridians, and 5 elements of the Five Elements. In the ISADTTHM, users can choose to list the complete collection of ISADTTHM, or can choose to list concerned information using searching keywords such as acupoint indications and clinical applications, acupoint names, meridians, extra meridians, and Five Elements (a total of more than 900 keywords) to query about the information of acupoint diagnosis and treatment. Each item information of acupoint diagnosis and treatment includes the following contents: acupoint name, Pinyin of acupoint name, international code of acupoint, alias of acupoint, acupoint definition, acupoint positioning method, acupoint anatomical position and structure, Five Elements affiliation of acupoint, meridian affiliation of acupoint, English name of meridian affiliation of acupoint, Five Elements affiliation of meridian affiliation of acupoint, acupoint treatment methods - acupuncture, acupoint treatment methods - moxibustion, acupoint treatment methods - massage and others, acupoint functions, acupoint indications and clinical applications, main compatible acupoints of acupoint, and acupoint pictures. Different from information systems based on static webpages, ISADTTHM is based on web database, with only about five files, small storage space, easy to upgrade, maintain, and update, and low error rate, which is conducive to information mining and analysis, and user inquiries to the information of interest. At the bottom left of each page of ISADTTHM, there is Google Translate, which can translate the Chinese of the current page into the selected language.
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- 2023
6. Predicting the risk of acute respiratory failure among asthma patients—the A2-BEST2 risk score: a retrospective study
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Yanhong Qi, Jing Zhang, Jiaying Lin, Jingwen Yang, Jiangan Guan, Keying Li, Jie Weng, Zhiyi Wang, Chan Chen, and Hui Xu
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Bronchial asthma ,Acute respiratory failure ,Predicted ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Objectives Acute respiratory failure (ARF) is a common complication of bronchial asthma (BA). ARF onset increases the risk of patient death. This study aims to develop a predictive model for ARF in BA patients during hospitalization. Methods This was a retrospective cohort study carried out at two large tertiary hospitals. Three models were developed using three different ways: (1) the statistics-driven model, (2) the clinical knowledge-driven model, and (3) the decision tree model. The simplest and most efficient model was obtained by comparing their predictive power, stability, and practicability. Results This study included 398 patients, with 298 constituting the modeling group and 100 constituting the validation group. Models A, B, and C yielded seven, seven, and eleven predictors, respectively. Finally, we chose the clinical knowledge-driven model, whose C-statistics and Brier scores were 0.862 (0.820–0.904) and 0.1320, respectively. The Hosmer-Lemeshow test revealed that this model had good calibration. The clinical knowledge-driven model demonstrated satisfactory C-statistics during external and internal validation, with values of 0.890 (0.815–0.965) and 0.854 (0.820–0.900), respectively. A risk score for ARF incidence was created: The A2-BEST2 Risk Score (A2 (area of pulmonary infection, albumin), BMI, Economic condition, Smoking, and T2(hormone initiation Time and long-term regular medication Treatment)). ARF incidence increased gradually from 1.37% (The A2-BEST2 Risk Score ≤ 4) to 90.32% (A2-BEST2 Risk Score ≥ 11.5). Conclusion We constructed a predictive model of seven predictors to predict ARF in BA patients. This predictor’s model is simple, practical, and supported by existing clinical knowledge.
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- 2023
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7. Analysis of word occurrence frequency and word association in English text file: A big data analytics method
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YanHong Qi, GuangHua Liu, and WenJun Zhang
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big data analytics ,word splitting ,word occurrence frequency ,word association ,English text ,algorithm ,software ,Biology (General) ,QH301-705.5 - Abstract
In present study, I presented an algorithm for analysis of word occurrence frequency and word association in English text file. Various delimiters were used for splitting words. In addition, common used grammatical words are ignored in word occurrence and association analysis. All different words were listed according to word occurrence frequency from the greater to the smaller. Word association was detected by using one-dimensional ordered cluster analysis. The words fallen in the same class may likely have strong association. Theoretically, various classes at distinct clustering hierarchical level may represent different hierarchical topics. Java software of the algorithm was provided.
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- 2018
8. Simple and easy estimation of network properties based on linear correlation analysis
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Yanhong Qi
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network ,direction interactions ,Pearson linear correlation ,partial linear correlation ,estimation ,Biology (General) ,QH301-705.5 - Abstract
An ecological network can be constructed by calculating the sampling data of taxon by sample type. A statistically significant Pearson linear correlation means an indirect or direct linear interaction between two taxa, and a statistically significant partial (net, or pure) correlation based on Pearson linear correlation means a candidate direct linear interaction between two taxa. In many cases, statistically significant partial correlations are not available, or we only need to estimate some of network properties. Based on sampling data of arthropods in different countries and periods, in present study I proved that the number of candidate direct linear interactions (y) increases with the number of indirect + direct linear interactions (x) calculated by Pearson linear correlation (y=-0.2757+0.5343x, r2=0.859, p
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- 2015
9. A New Code-based Blind Signature in Rank Metric.
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Yanhong Qi, Xindong Liu, and Li-Ping Wang
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- 2021
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10. Shi Zhenyi on New Approaches for the Development of Western Minority Areas in China
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Ni Zhong, Yanhong Qi, and Robert Tian
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General Medicine ,General Chemistry - Published
- 2023
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11. A New Code-Based Traceable Ring Signature Scheme
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Yanhong Qi and Li-Ping Wang
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Article Subject ,Computer Networks and Communications ,Information Systems - Abstract
Traceable ring signatures (TRS) can reveal the identity of the signer if he signs two different messages on the same tag in the group of users. They are widely used in e-voting and cryptocurrencies such as Monero. However, there is still no secure code-based TRS scheme in the random oracle model (ROM). In this paper, we propose a code-based TRS scheme whose security is based on the hardness of the syndrome decoding problem and 2-regular null syndrome decoding problem. We show that our scheme is secure in the ROM in terms of tag-linkability, anonymity, and culpability. The signature size of our scheme is logarithmic in terms of the ring size.
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- 2022
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12. Mechanism of Action of Bone Marrow Mesenchymal Stem Cell in Combination with miR-36b Therapy in Cellular Repair of Septic Lung Injury
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Yanhong Qi, Zhe Xu, Binbin Cai, Jie Weng, and Hui Xie
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business.industry ,Mesenchymal stem cell ,Biomedical Engineering ,Medicine (miscellaneous) ,Bioengineering ,Lung injury ,medicine.anatomical_structure ,Mechanism of action ,Cancer research ,Medicine ,Bone marrow ,medicine.symptom ,business ,Biotechnology - Abstract
Our study aims to assess the role of BMSCs (MSCs) transplantation in combination with miR-36b in the repair of septic lung injury. MSCs were cultured by the paste-wall method and characterized. MSCs combined with miR-36b medium were added to lung-injured cells for 14 days followed by analysis of cell viability by CCK-8 assay, GLUT3 expression and apoptosis by western blot. After 1 and 3 days of growth of MSCs progeny under electron microscopy, the MSCs showed long shuttle-shaped morphology. MSCs in combination with miR-36b resulted in enhanced proliferative capacity of lung-injured cells and enhanced protein expression of GLUT3. CCK-8 assay showed increased viability of lung-injured cells and elevated protein and mRNA expression of GLUT3. Meanwhile, the expression of apoptosis-related proteins was significantly down-regulated. In conclusion, MSCs in combination with miR-36b therapy may ameliorate lung injury by promoting lung cell proliferation through inhibition of apoptotic pathway.
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- 2021
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13. Genome-wide characterization of the bHLH gene family in Gynostemma pentaphyllum reveals its potential role in the regulation of gypenoside biosynthesis
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Yanhong Qin, Jinmei Li, Jianhua Chen, Shaochang Yao, Liangbo Li, Rongshao Huang, Yong Tan, Ruhong Ming, and Ding Huang
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Gynostemma pentaphyllum ,Basic helix-loop-helix ,Genome-wide characterization ,Transcription factor ,Gypenoside biosynthesis ,Botany ,QK1-989 - Abstract
Abstract Background Gynostemma pentaphyllum, an ancient Chinese herbal medicine, serves as a natural source of gypenosides with significant medicinal properties. Basic helix-loop-helix (bHLH) transcription factors play pivotal roles in numerous biological processes, especially in the regulation of secondary metabolism in plants. However, the characteristics and functions of the bHLH genes in G. pentaphyllum remain unexplored, and their regulatory role in gypenoside biosynthesis remains poorly elucidated. Results This study identified a total of 111 bHLH members in G. pentaphyllum (GpbHLHs), categorizing them into 26 subgroups based on shared conserved motif compositions and gene structures. Collinearity analysis illustrated that segmental duplications predominately lead to the evolution of GpbHLHs, with most duplicated GpbHLH gene pairs undergoing purifying selection. Among the nine gypenoside-related GpbHLH genes, two GpbHLHs (GpbHLH15 and GpbHLH58) were selected for further investigation based on co-expression analysis and functional prediction. The expression of these two selected GpbHLHs was dramatically induced by methyl jasmonate, and their nuclear localization was confirmed. Furthermore, yeast one-hybrid and dual-luciferase assays demonstrated that GpbHLH15 and GpbHLH58 could bind to the promoters of the gypenoside biosynthesis pathway genes, such as GpFPS1, GpSS1, and GpOSC1, and activate their promoter activity to varying degrees. Conclusions In conclusion, our findings provide a detailed analysis of the bHLH family and valuable insights into the potential use of GpbHLHs to enhance the accumulation of gypenosides in G. pentaphyllum.
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- 2024
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14. A Generalized Discrete Dynamic Model for Human Epidemics
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Guoling Wang, Zhongmin Guo, Jiahai Lu, Yi Lu, Zeliang Chen, Yanhong Qi, and Wenjun Zhang
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Transmission (mechanics) ,Recovery rate ,law ,business.industry ,Range (statistics) ,Medicine ,business ,Demography ,Incubation period ,law.invention - Abstract
A discrete dynamic model for human epidemics was developed in present study. The model included major parameters as transmission strength and its decline parameters, mean incubation period, hospitalization time, non-hospitalization daily mortality, non-hospitalization daily recovery rate, and hospitalization proportion, etc. Sensitivity analysis of the model indicated the total cumulative cases significantly increased with initial transmission strength, hospitalization time. The total cumulative cases significantly decreased with transmission strength’s decline and hospitalization proportion, and linearly decreased with non-hospitalization daily mortality and non-hospitalization daily recovery rate. In a certain range, the total cumulative cases significantly increased with mean incubation period. Sensitivity analysis demonstrated that dynamic change of transmission strength is one of the most important and controllable factors. In addition, reducing the delay for hospitalization is much effective in weakening disease epidemic. Non-hospitalization recovery rate is of importance for enhancing immunity to recover from the disease.
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- 2020
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15. Genomic Analysis of a Novel Torradovirus 'Rehmannia Torradovirus Virus': Two Distinct Variants Infecting Rehmannia glutinosa
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Yanhong Qin, Shuhao Lu, Yi Wen, Shaojian Li, Suxia Gao, Desheng Zhang, Xuemeng Li, Jin Yang, Li Gu, Mingjie Li, Fei Wang, and Chuantao Lu
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Rehmannia glutinosa ,Rehmannia torradovirus virus ,Torradoviruses ,high-throughput sequencing ,sequence comparison ,phylogenetic relationship ,Biology (General) ,QH301-705.5 - Abstract
Rehmannia glutinosa, a crucial medicinal plant native to China, is extensively cultivated across East Asia. We used high-throughput sequencing to identify viruses infecting R. glutinosa with mosaic, leaf yellowing, and necrotic symptoms. A novel Torradovirus, which we tentatively named “Rehmannia torradovirus virus” (ReTV), was identified. The complete sequences were obtained through reverse-transcription polymerase chain reaction (RT-PCR), 5′ and 3′ rapid amplification of cDNA ends, and Sanger sequencing. The amino acid sequence alignment between the ReTV-52 isolate and known Torradovirus species in the Pro-Pol and coat protein regions were 51.3–73.3% and 37.1–68.1%, respectively. Meanwhile, the amino acid sequence alignment between the ReTV-8 isolate and known Torradovirus species in the Pro-Pol and coat protein regions were 52.7–72.8% and 36.8–67.5%, respectively. The sequence analysis classified ten ReTV strains into two variants. The ReTV-52 genome has two RNA segments of 6939 and 4569 nucleotides, while that of ReTV-8 consists of two RNA segments containing 6889 and 4662 nucleotides. Sequence comparisons and phylogenetic analysis showed ReTV strains clustered within the Torradovirus, exhibiting the closet relation to the squash chlorotic leaf spot virus. The RT-PCR results showed a 100% ReTV detection rate in all 60 R. glutinosa samples. Therefore, ReTV should be classified as a novel Torradovirus species. ReTV is potentially dangerous to R. glutinosa, and necessitating monitoring this virus in the field.
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- 2024
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16. A Matlab program for stepwise regression
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Yanhong Qi, GuangHua Liu, and WenJun Zhang
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Statistics::Machine Learning ,Statistics::Theory ,lcsh:Therapeutics. Pharmacology ,lcsh:T58.5-58.64 ,lcsh:Information technology ,lcsh:RM1-950 ,population characteristics ,Statistics::Methodology ,Matlab program ,variables identification ,Statistics::Computation ,stepwise linear regression ,statistic significance - Abstract
The stepwise linear regression is a multi-variable regression for identifying statistically significant variables in the linear regression equation. In present study, we presented the Matlab program of stepwise regression.
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- 2016
17. Ideal cardiovascular health behaviors and factors prevent the development of hypertension in prehypertensive subjects
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Jingsheng Gao, Shouling Wu, Ying Zhu, Ying Liu, Yan-xiu Wang, Jinfeng Li, Xin Liang, Hui Sun, Yong Zhao, Yanhong Qi, Ming Gao, Liyuan Ma, Hong-tao Zhao, and Wen Wang
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Adult ,Male ,China ,medicine.medical_specialty ,Adolescent ,Physiology ,Health Behavior ,Cardiovascular System ,Risk Assessment ,Prehypertension ,Body Mass Index ,Young Adult ,Risk Factors ,Internal medicine ,Internal Medicine ,Humans ,Medicine ,Cumulative incidence ,Prospective Studies ,Myocardial infarction ,Family history ,Stroke ,Aged ,Aged, 80 and over ,Ideal (set theory) ,business.industry ,Incidence ,Hazard ratio ,General Medicine ,Middle Aged ,medicine.disease ,Confidence interval ,Hypertension ,Disease Progression ,Physical therapy ,Female ,business - Abstract
Seven ideal health metrics were defined by AHA to monitor cardiovascular health. This study aimed to investigate the impact of ideal cardiovascular health behaviors and factors on the development of hypertension in prehypertensive subjects.Thirty-two thousand eight-hundred and eighty-seven participants with prehypertension were included in the study after excluding for preexisting stroke, myocardial infarction or malignancy. Cox proportional hazards regression was used to calculate hazard ratios and 95% confidence intervals [CI] for the development of hypertension.During a follow-up of 52.2 months, 15,500 prehypertensive participants developed hypertension. The cumulative incidence of hypertension decreased with the number of ideal health metrics increased. It was 78.61%, 71.08%, 63.15%, 56.07% and 61.62% in prehypertensive individuals carrying ≤ 1, 2, 3, 4 and ≥ 5 ideal health behaviors or factors, respectively. After adjustment for age, gender, family history of hypertension, alcohol consumption, resting heart rate, plasma triglyceride, high-density lipoprotein cholesterol, low-density lipoprotein cholesterol, and high-sensitivity C-reactive protein, the risk ratios of incident hypertension in the subjects who carried 2, 3, 4, and ≥ 5 ideal health metrics were 0.833 (95%CI: 0.789-0.880), 0.710 (95%CI: 0.672-0.749), 0.604 (95%CI: 0.568-0.642), and 0.581 (95%CI: 0.524-0.643), respectively, in comparison to those with ≤ 1 ideal health metric. A similar trend was also observed in male and female populations. Poor health metrics, including body mass index, diet (salt intake), physical activity, total cholesterol, and smoking, were predictors for the development of hypertension in prehypertensive individuals.Ideal cardiovascular health behaviors and factors are protective factors to prevent the progression from prehypertension to hypertension.
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- 2015
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18. A cellular automaton for population diffusion in the homogeneous rectangular area
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WenJun Zhang, YanHong Qi, and ZhiGuo Zhang
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population diffusion ,homogeneous environment ,lcsh:Q ,Nonlinear Sciences::Cellular Automata and Lattice Gases ,cellular automaton ,lcsh:Science - Abstract
In this paper, a cellular automaton for population diffusion was introduced. A group of discrete partial differential equations was used to simulate population diffusion in the homogeneous rectangular area. The population dynamics was described by Malthus model, Logistic model, and oscillation model. The cellular automaton can be used to analyze the effects of initial distribution of organisms on diffusion process and distribution pattern, to estimate the diffusion speed and possible diffusion directions, and to determine the major regions occupied by organisms.
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- 2015
19. Pattern classification of HLA-DRB1 alleles, human races and populations: Application of self-organizing competitive neural network
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WenJun Zhang and YanHong Qi
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musculoskeletal diseases ,pattern classification ,self-organizing competitive neural network ,immune system diseases ,human races and populations ,lcsh:Q ,skin and connective tissue diseases ,HLA-DRB1 alleles ,lcsh:Science - Abstract
HLA-DRB1 gene is concerned with human immune systems. There are about 300 alleles of HLA-DRB1 gene. The self-organizing competitive neural network was used in present study to make non-supervisory classification on 14 HLA-DRB1 alleles, and 54 human races and populations (Zhang and Qi, 2005). It was found that HLA-DRB1-0901 and 1402 are similar to each other in the distribution in human races and populations. There were higher similarity between HLA-DRB1-0101 and 0302, and between HLA-DRB1-0701 and 0301. The results showed that there were significant differences among the various races and there were similarities among populations in the same race. South America Indians and Siberians are highly similar to each other. There was relatively significant difference between Northern Chinese and Southern Chinese. Han Chinese in Guangdong was similar to ethnic minorities such as the Lahu Chinese and Yao Chinese.
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- 2014
20. Two-dimensional ordered cluster analysis of component groups in self-organization
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WenJun Zhang, YanHong Qi, and ZhiGuo Zhang
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groups ,two-dimensional cluster analysis ,lcsh:Q ,lcsh:Science ,components - Abstract
An algorithm for two-dimensional cluster analysis of component groups, originally from Zhang et al., (2004), was introduced in this study. The algorithm composes of three procedures, i.e., calculation of distance measures, randomization statistic test, and ordered clustering of components.
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- 2014
21. Genomic Characterization and Molecular Detection of Rehmannia Allexivirus Virus, a Novel Allexivirus Infecting Rehmannia glutinosa
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Yanhong Qin, Shuhao Lu, Yi Wen, Shaojian Li, Suxia Gao, Yuxia Liu, Xuemeng Li, Jin Yang, Fengli Wang, Fei Wang, and Chuantao Lu
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Allexivirus ,ReAV ,genomic sequence ,molecular variation ,phylogenetic relationship ,Biology (General) ,QH301-705.5 - Abstract
Rehmannia glutinosa is one of the most important medicinal plants in China and is affected by viral diseases. In this study, a new virus tentatively named Rehmannia Allexivirus virus (ReAV) was identified through high-throughput sequencing, reverse-transcription polymerase chain reaction (RT-PCR), and Sanger sequencing. The complete genome length was 7297 nt and it contained five open reading frames (ORFs) encoding replicase, triple gene block 1(TGB1), TGB2, TGB3, and coat protein (CP). The replicase and CP presented nucleotide homology ranges of 59.9–65.2% and 47.5–55.5% between the nine ReAV isolates and the other 12 species of the genus Allexivirus. In the nine isolates, ReAV-20 and ReAV-31 isolates showed breakpoints in the replicase and CP regions, respectively. The other isolates shared 87.2–96.5% nt with the whole genome nucleotide identity. The phylogenetic tree showed that seven ReAV isolates based on replicase, CP, and whole genome sequences were clustered in the same branch and were related to the genus Allexivirus. The ReAV detection rates for 60 R. glutinosa samples were 73.3–81.7% through RT-PCR using primers targeting the replicase or CP genes. These results demonstrate that ReAV is the dominant virus in R. glutinosa. This study provides important evidence for understanding viruses infecting R. glutinosa and for establishing efficient strategies to prevent viral spread.
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- 2024
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22. Molecular Characterization of the First Partitivirus from a Causal Agent of Salvia miltiorrhiza Dry Rot
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Luyang Song, Rongrong Zhong, Zhengzhe Guan, Lina Huang, Ganlin Wang, Zhimin Yang, Ke Shao, Yanhong Qin, Caiyi Wen, Ying Zhao, and Fei Wang
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partitivirus ,Fusarium oxysporum ,Salvia miltiorrhiza dry rot ,hypovirulence ,Biology (General) ,QH301-705.5 - Abstract
Root rot as a result of Salvia miltiorrhiza is a common root disease caused by Fusarium spp., which has become one of the main diseases affecting the production of S. miltiorrhiza. Currently, several hypovirulence-related mycoviruses have been identified in many phytopathogenic fungi, including Fusarium spp., which show potential as biological controls. In this study, we report a new mycovirus, Fusarium oxysporum partitivirus 1 (FoPV1), isolated from F. oxysporum strain FCR51, which is a causal agent of S. miltiorrhiza dry rot. The FoPV1 genome contains two double-stranded RNA segments (dsRNA1 and dsRNA2). The size of dsRNA1 is 1773 bp, and it encodes a putative RNA-dependent RNA polymerase (RdRp). The dsRNA2 is 1570 bp in length, encoding a putative capsid protein (CP). Multiple sequence alignments and phylogenetic analyses based on the amino acid sequences of the RdRp and the CP proteins indicated that FoPV1 appears to be a new member of the family Partitiviridae that is related to members of the genus Gammapartitivirus. Pathogenicity assay showed that FoPV1 confers hypervirulence to its host, F. oxysporum. This is the first report of a partitivirus infecting F. oxysporum and the first hypovirulence-related mycovirus from the causal agent of S. miltiorrhiza dry rot.
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- 2024
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23. A genetic analysis of segregation distortion revealed by molecular markers in Lophopyrum ponticum chromosome 7E
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Xiuli Zhang, Lingrang Kong, Bianyin Wang, Jinjin Cai, Mei Yan, and Yanhong Qi
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Genetic Markers ,Germplasm ,Genetics ,Heredity ,food.ingredient ,Chromosome Mapping ,Chromosome ,Chromosomal translocation ,Biology ,biology.organism_classification ,Genetic analysis ,Chromosomes, Plant ,food ,Thinopyrum ,Gene mapping ,Thinopyrum intermedium ,Inbreeding ,Agropyron ,Triticeae - Abstract
Segregation distortion can be defined as deviations from normal Mendelian segregation (Sandler et al. 1958). It is a common phenomenon found in most genetic mapping studies in many species (Faris et al. 1998). Lophopyrum ponticum (also syn. Agropyron elongatum (Host) Beau.) has been one of the most important perennial Triticeae germplasm sources for wheat improvement (Oliver et al. 2006). Chromosome 7E of L. ponticum is crucial because it is the carrier of a number of elite agronomic traits (Zhang et al. 2011). However, there is still no report about molecular markers showing segregation distortion region of L. ponticum chromosome 7E. Segregation distortion caused by preferential transmission may be affected by genetic background. Kong et al. (2008) reported that a segment of the Thinopyrum intermedium chromosome 7E present in the translocation line P98134 was preferentially transmitted through male gametes under different genetic background conditions. However, the transmission frequency of T. intermedium 7E segment present in another wheat T. intermedium translocation line, P961341, varied with different genetic backgrounds. Similarly, studies on the translocations involving T. ponticum chromosome 7el1 indicated that Thinopyrum chromosome 7el1 was transmitted normally in Thatcher and China Spring wheat backgrounds (McIntosh et al. 1976). However, high levels of distortion were observed when chromosome 7el1 was transferred in other genetic backgrounds (McIntosh et al. 1995). Both 7el1 and 7el2, are gametocidal chromosomes (KibirigeSebunya and Knott 1983; Prins et al. 1996). Gametocidal chromosomes cause abortion of gametes lacking the gametocidal chromosome, which results in partial sterility and exclusive transmission of these chromosomes (Endo 1990).
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- 2011
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24. New exact solutions of nontraveling wave and local excitation of dynamic behavior for GGKdV equation
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Yanhong Qiu, Baodan Tian, Daquan Xian, and Lizhu Xian
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GGKdV equation ,CKdVE method ,Lie point symmetry ,Equivalence transformation ,Explicit and exact solution ,Physics ,QC1-999 - Abstract
For GGKdV equation, solutions of the compatible KdV equation are obtained by using CKdVE method, and Lie point symmetry group of the equation is also obtained. Further, some new exact non-traveling wave solutions are obtained by using the equivalent transformation method and elliptic function method on solving the corresponding symmetric reduction equation, and local excitation modes of three kinds of solutions under three different groups of parameters are presented. Finally, the integrability in the sense of the CkdVE and the Lie Symmetric are proved, which shows the effectiveness of the organic combination of various kinds of nonlinear analytical methods. This CkdVE method communicated the mathematical relations of different nonlinear models. It is a new bridge between the known and unknown solutions of the nonlinear partial differential equations, and it is a new way to explore complex nonlinear complex phenomena.
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- 2023
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25. Prevalence of obesity among primary students between 2009 to 2014 in China: a meta-analysis
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Yanhong, Qi, Yang, Yu, Kaisheng, Li, Zhihong, Chen, Yuanchang, Liu, and Hongmei, Zhang
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Male ,China ,Schools ,Adolescent ,Asian People ,Prevalence ,Humans ,Female ,Obesity ,Child ,Students - Abstract
In recent years, obesity has become the major public health problems worldwide. The detection rate of obesity is alarmingly rising among children and adolescents in China, whose population of 120 million are in range of obesity. It was estimated that 8% of her children are obese.Publications between 2009 and 2014 on the obesity prevalence among primary school students in China were retrieved from PubMed, online Chinese periodical full-text databases of VIP, CNKI and Wanfang. Meta Analyst software was used to sum up and analyze the detection rates included in the previously retrieved literatures.After evaluation of the quality of the articles, 18 papers were finally included in our study, and the total sample sizes on the obesity investigation were 247547, in which 26466 were obesity. Meta-analysis findings showed that the pooled prevalence of obesity in primary school students is 10.0 %( 95% CI: 7.2%-13.5%).Our results indicated that the obesity prevalence status in China was still troublesome, for the situation will go worse if we currently fail to take effective and practical measures.Introducción: En los últimos años, la obesidad se ha convertido en el principal problema de salud pública a nivel mundial. La tasa de detección de obesidad infantil está creciendo alarmantemente entre los niños y los adolescentes en China, cuya población de 120 millones se sitúa en el rango de obesidad. Se calculó que el 8% de los niños son obesos. Métodos: Se recopilaron publicaciones entre 2009 y 2014 sobre la prevalencia de obesidad entre los alumnos de primaria en China de PubMed, textos completos de bases de datos de periódicos chinos online de VIP, CNKI y Wanfang. Se empleó software de meta-análisis para resumir y analizar las tasas de detección incluidas en la bibliografía previamente obtenida. Resultados: Después de la evaluación de la calidad de los artículos, finalmente incluimos 18 artículos en nuestro estudio, y los tamaños de la muestra total en la investigación sobre obesidad fueron 247547, donde 26466 presentaron obesidad. Los resultados de los meta-análisis mostraron que la prevalencia de la obesidad en los alumnos de primaria es del 10,0% (IC del 95%: 7,2% - 13,5%). Conclusión: Nuestros resultados indican que la prevalencia de obesidad en China todavía supone un problema preocupante, dado que la situación será peor si no se toman medidas eficaces y prácticas.
- Published
- 2015
26. Bifurcation analysis of a food chain chemostat model with Michaelis-Menten functional response and double delays
- Author
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Xin Xu, Yanhong Qiu, Xingzhi Chen, Hailan Zhang, Zhiyuan Liang, and Baodan Tian
- Subjects
chemostat model ,delay ,equilibrium ,stability ,hopf bifurcation ,Mathematics ,QA1-939 - Abstract
In this paper, we study a food chain chemostat model with Michaelis-Menten function response and double delays. Applying the stability theory of functional differential equations, we discuss the conditions for the stability of three equilibria, respectively. Furthermore, we analyze the sufficient conditions for the Hopf bifurcation of the system at the positive equilibrium. Finally, we present some numerical examples to verify the correctness of the theoretical analysis and give some valuable conclusions and further discussions at the end of the paper.
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- 2022
- Full Text
- View/download PDF
27. Efficacy and safety of adding gemtuzumab ozogamicin to conventional chemotherapy for adult acute myeloid leukemia: a systematic review and meta-analysis
- Author
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Yuancheng Guo, Lijuan Deng, Yanhong Qiao, and Bei Liu
- Subjects
acute myeloid leukemia ,gemtuzumab ozogamicin ,antibody-drug conjugate ,induction chemotherapy ,systematic review ,meta-analysis ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Introduction: Compared with the 3 + 7 regimen, the addition of gemtuzumab ozogamicin (GO) has improved survival in patients with acute myeloid leukemia (AML). We conducted a systematic review and meta-analysis to examine the overall efficacy and safety of GO in combination with conventional chemotherapy regimens in patients with AML. Methods: We searched several databases (MEDLINE, Embase, Web of Science and Cochrane Library). Hazard ratios (HRs) with 95% confidence intervals (CIs) were calculated for overall survival (OS) and relapse-free survival (RFS); odds ratios (ORs) with 95% CIs were calculated for the other outcomes. Results: Ten records involving 11 randomized controlled trials (RCTs) met the inclusion criteria. GO plus induction chemotherapy significantly increased RFS (HR: 0.84, 95% CI: 0.73–0.98), decreased the incidence of relapse (OR: 0.78, 95% CI: 0.68–0.91) and resistant disease (OR: 0.72, 95% CI: 0.61–0.84), and had no significant effect on the rate of complete remission (CR) with or without incomplete platelet recovery (OR: 1.21, 95% CI: 0.94–1.55), 30-day mortality (OR: 1.25, 95% CI: 0.99–1.57). Subgroup analysis showed significant OS benefits for patients with favorable cytogenetic (HR: 0.50, 95% CI: 0.28–0.89) or given GO at induction stage (HR: 0.91, 95% CI: 0.84–1.00). Compared with other dosing schedule groups, 3 mg/m2 fractionated schedule had a greater RFS benefit (HR: 0.52, 95% CI: 0.36–0.76) and lower relapse risk (OR: 0.48, 95% CI: 0.28–0.84). Conclusions: Adding low-dose GO to induction or both induction and post-remission chemotherapy has considerable efficacy and unequivocal safety for newly diagnosed adult AML.
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- 2022
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- View/download PDF
28. Species and genetic variability of sweet potato viruses in China
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Yongjiang Wang, Yanhong Qin, Shuang Wang, Desheng Zhang, Yuting Tian, Fumei Zhao, Yingzhi Wang, Hui Lv, Qi Qiao, and Zhenchen Zhang
- Subjects
Sweet potato virus ,Species ,Genetic diversity ,China ,Plant culture ,SB1-1110 - Abstract
Abstract China is the world’s largest producer of sweet potato (Ipomoea batatas (L.) Lam.). Considering that there are numerous sweet potato-producing regions in China and sweet potato is a vegetatively propagated crop, the genetic diversity of sweet potato viruses could be high in the country. However, studies on species and genetic variabilities of sweet potato viruses in China are limited, making it difficult to prevent and control viral diseases in this crop. During 2014–2019, sweet potato samples with viral disease-like symptoms were randomly collected from sweet potato fields in 25 provinces in China. Twenty-one virus species, including 12 DNA and 9 RNA viruses, were identified in the samples using next-generation sequencing, polymerase chain reaction and rolling-circle amplification methods. One novel sweepovirus species, Sweet potato leaf curl Hubei virus (SPLCHbV), was identified. Two species, Sweet potato collusive virus and Tobacco mosaic virus, were identified for the first time in sweet potato in China. Full-length or nearly full-length genomic sequences of 111 isolates belonging to 18 viral species were obtained. Genome sequence comparisons of potyvirus isolates obtained in this study indicate that the genome of sweet potato virus 2 is highly conserved, whereas the other four potyviruses, sweet potato feathery mottle virus, sweet potato virus G, sweet potato latent virus and sweet potato virus C, exhibited a high genetic variability. The similarities among the 40 sweepovirus genomic sequences obtained from eight sweepovirus species are 67.0–99.8%. The eight sweepoviruses include 14 strains, of which 4 novel strains were identified from SPLCHbV and 1 from sweet potato leaf curl Guangxi virus. Five sweet potato chlorotic stunt virus (SPCSV) isolates obtained belong to the WA strain, and the genome sequences of SPCSV are highly conserved. Together, this study for the first time comprehensively reports the variability of sweet potato viruses in China.
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- 2021
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29. [Intrinsic prokaryotic promoter activity of SUMO gene and its applications in the protein expression system of Escherichia coli]
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Yanhong, Qi, Zhurong, Zou, Huaying, Zou, Yunliu, Fan, and Chunyi, Zhang
- Subjects
Saccharomyces cerevisiae Proteins ,Base Sequence ,Lac Operon ,Recombinant Fusion Proteins ,Genetic Vectors ,Molecular Sequence Data ,Escherichia coli ,Small Ubiquitin-Related Modifier Proteins ,Sumoylation ,Amino Acid Sequence ,Promoter Regions, Genetic - Abstract
Nowadays, SUMO fusion system is important for recombinant protein production in Escherichia coli, yet a few aspects remain to be improved, including the efficacy for vector construction and protein solubility. In this study, we found the SUMO gene Smt3 (Sm) of Saccharomyces cerevisiae conferred an unexpected activity of constitutive prokaryotic promoter during its PCR cloning, and the gene coding regions of SUMOs in most species had a sigma70-dependent prokaryotic promoter embedded, through the prediction via the BPROM program developed by Softberry. By combining the characters of Sm promoter activity and the Stu I site (added at the 3'-terminal of Sm), and introducing a His-tag and a hyper-acidic solubility-enhancing tag, we further constructed a set of versatile vectors for gene cloning and expression on the basis of Sm'-LacZa fusion gene. Experimentally started from these vectors, several target genes were subcloned and expressed through blue-white screening and SDS-PAGE analysis. The results manifest a few of expectable advantages such as rapid vector construction, highly soluble protein expression and feasible co-expression of correlated proteins. Conclusively, our optimized SUMO fusion technology herein could confer a large potential in E. coli protein expression system, and the simultaneously established co-expression vector systems could also be very useful in studying the protein-protein interactions in vivo.
- Published
- 2011
30. A preliminary forecast of the intensification of global and regional rice production
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Yanhong Qi and Wenjun Zhang
- Subjects
Human health ,Food security ,Food shortage ,Agronomy ,food and beverages ,Production (economics) ,Staple food ,World population ,Business ,Environmental quality ,Agricultural economics - Abstract
Rice is the staple food that feeds nearly half of the world population (Way and Heong 1994). In the past 3 decades, the steadily increasing rice production has reduced the food shortage in Asia and the world (IRRI 2003). However, the increased use of land and pesticides aggravates the deterioration of environmental quality and human health (Altieri 1994, Heong and Escalada 1998, Tilman et al 2001). A perspective on future rice production is essential for estimating the biological and environmental impacts caused by intensive rice production and for taking appropriate measures to avoid these side effects without threatening overall food security. In this paper, seven variables related to intensive rice production were fitted with data in the past 3 decades and a forecast for the years 2005-25 was made.
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- 2009
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31. Comparative Pharmacokinetics of Cinobufacini Capsule and Injection by UPLC-MS/MS
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Ming Li, Yanhong Qin, Zhe Li, Jinshuai Lan, Tong Zhang, and Yue Ding
- Subjects
comparative pharmacokinetics ,cinobufacini capsule ,cinobufacini injection ,UPLC-MS/MS ,bufalin ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Cinobufacini capsule and injection are two different formulations from the same source, obtained from the extraction of the skin of Bufo bufo gargarizans Cantor, which have been approved by the Chinese State Food and Drug Administration (CFDA) for the treatment of various cancers. Our previous study has found that the cinobufacini capsule and injection exhibited different anticancer effects, but their different pharmacokinetic behaviors, which could give a cause of that, have never been reported. So a sensitive and selective method for the simultaneous quantitation of 13 compounds in the rat plasma, including bufothionine, hellebrigenin, bufalin, gamabufotalin, telocinobufagin, cinobufagin, arenobufagin, cinobufotalin, desacetylcinobufotalin, bufotalin, pseudobufarenogin, resibufogenin, and desacetylcinobufagin, was established by using the Agilent 6460 mass spectrometer equipped with an ESI ion source in a multiple-reaction monitoring (MRM) mode. Chromatographic analysis was accomplished in 6 min by using an Agilent SB-C18 column and a mobile phase consisting of 0.1% formic acid in water and acetonitrile in an optimized gradient program at a flow rate of 0.3 ml/min. The correlation coefficients (r) of all analytes ranged from 0.9967 to 0.9996, while their lower limits of quantification ranged from 0.20 to 4.84 ng/ml. The method has been fully verified and applied for the pharmacokinetic difference study of the Cinobufacini capsule and injection in rats. The results showed that nine components could be quantitated in rat plasma samples after the administration of the cinobufacini capsule, while only bufothionine, bufalin, arenobufagin, and pseudobufarenogin could be detected in the cinobufacini injection group. Their pharmacokinetic studies indicated telocinobufagin, bufalin, desacetylcinobufagin, and arenobufagin were predicted as the potential active substances of the Cinobufacini capsule, while bufothionine was considered as a major ingredient in the cinobufacini injection due to its relatively high blood drug exposure. Also, the AUC of the nine components in cinobufacini capsule groups with three different doses showed a similar trend with significant differences, and the exposure increased with the increase of the dose. The pharmacokinetic characteristics of all major ingredients in cinobufacini capsules and injection were of wide variation, which could be used to explain differences in the efficacy of the cinobufacini capsule and injection and infer the pharmacodynamic ingredients of various cinobufacini preparations.
- Published
- 2022
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- View/download PDF
32. MATASS: the software for multi-attribute assessment problems.
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WenJun Zhang, YanHong Qi, and Xin Li
- Subjects
SOFTWARE ecosystems ,TOPSIS method - Abstract
In present study, we developed the software for multi-attribute assessment problems, MATASS (Multi-Attribute Assessment System). The procedures of MATASS include, (1) for a multi-attribute assessment problem, there are m attributes for the assessment of n objects (ecosystems, networks, or habitats, etc.), and each attribute is given a weight according to its importance, and each of the attributes, according to its attribute domain, is assigned to one of seven common types, i.e., interval, upper limit, lower limit, weakly determined value, strongly determined value, no upper and lower limits (the bigger the better), and no upper and lower limits (the smaller the better); (2) data matrix is normalized corresponding to the types of attributes; (3) find the objects that do not meet their specified attribute intervals or values, disqualify these objects and remove them from object list, and the remaining objects are identified as the qualified; (4) re-normalize the data matrix for the qualified objects; (5) assess the qualified objects using various multi-attribute assessment methods, like TOPSIS, REVAWEA, SAWA, etc; (6) determine the final ranking of the qualified objects using Copeland method. Full Matlab codes and software of MATASS were given. [ABSTRACT FROM AUTHOR]
- Published
- 2017
33. A long-term forecast analysis on worldwide land uses
- Author
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WenJun Zhang, YanHong Qi, and ZhiGuo Zhang
- Subjects
Conservation of Natural Resources ,Asia ,Time Factors ,Population ,Management, Monitoring, Policy and Law ,Agricultural economics ,Agricultural land ,Environmental protection ,Sustainable agriculture ,education ,Ecosystem ,General Environmental Science ,Least Developed Countries ,education.field_of_study ,Analysis of Variance ,Poverty ,Land use ,business.industry ,Agriculture ,General Medicine ,Pollution ,Europe ,Geography ,Africa ,Linear Models ,Arable land ,Americas ,business ,Forecasting - Abstract
More and more lands worldwide are being cultivated for food production while forests are disappearing at an unprecedented rate. This paper aims to make a long-term forecast on land uses worldwide and provide the public, researchers, and government officials with a clear profile for land uses in the future. Data of land uses since 1961 were used to fit historical trajectories and make the forecast. The results show that trajectories of land areas can be well fitted with univariate linear regressions. The forecasts of land uses during the coming 25 years were given in detail. Areas of agricultural land, arable land, and permanent pasture land worldwide would increase by 6.6%, 7.2%, and 6.3% respectively in the year 2030 as compared to the current areas. Permanent crops land area all over the world is forecasted to increase 0.64% by 2030. By the year 2030 the areas of forests and woodland, nonarable and nonpermanent land worldwide would decrease by 2.4% and 0.9% against the current areas. All other land area in the world would dramatically decline by 6.4% by the year 2030. Overall the land area related to agriculture would tend to decrease in developed countries, industrialized countries, Europe, and North and Central America. The agriculture related land area would considerably increase in developing countries, least developed countries, low-income countries, Asia, Africa, South America, etc. Developing countries hold larger total land area than developed countries. Dramatic and continuous growth in agricultural land area of developing countries would largely contribute to the expected growth of world agricultural land area in the coming years. Population explosion, food shortage and poverty in the world, especially in developing countries, together caused the excessive cultivation of land for agricultural uses in the past years. Increasing agricultural land area exacerbates the climate changes and degradation of environment. How to limit the growth of human population is a key problem for reducing agricultural land expansion. Development and use of high-yielding and high-quality crop and animal varieties, diversification of human food sources, and technical and financial assistance to developing countries from developed countries, should also be implemented and strengthened in the future in order to slow down or even reverse the increase trend of agricultural land area. Sustainable agriculture is the effective way to stabilize the agricultural land area without food shortage. Through various techniques and measures, sustainable agriculture may meet the food production goals with minimum environmental risk. Public awareness and interest in sustainable agriculture will help realize and ease the increasing stress from agricultural land expansion.
- Published
- 2005
34. [Purification and some properties of D-carbamoylase]
- Author
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Jingming, Yuan, Yawei, Shi, Xiuqing, Yang, Huiyong, Lian, and Yanhong, Qi
- Subjects
Zinc ,Nickel ,Temperature ,Amino Acid Sequence ,Hydrogen-Ion Concentration ,Amidohydrolases ,Rhizobium - Abstract
A D-Carbamoylase produced by a strain NO. 2262 was purified to electrophoretic homogeneity with the recovery of 20% activity and the purification factor of 8 fold by three steps including (NH4)2SO4 fractionation, hydrophobic column and pre-packed Hitrap Q HR. It is indicated from the results of nativ-PAGE and SDS-PAGE analysis that the enzyme could be a homogeneous tetramer consisting of four 35 kD subunits. In addition, its optimal pH and optimal temperature are 8.0 and 45 degrees C respectively. The basic kinetic parameters of the enzyme are Km = 1.3 x 10(-3) mol/L and Vmax = 0.33 mumol/min with N-carbamyl-DL-Alanine as the substrate. The effect of bivalent metal ions on the enzyme was showed that Ni2+ could be as an activator, Zn2+ as a powerful inhibitor, while Co2+ had no any influence at all. Its N-terminal sequence is TRQKILAF in turn.
- Published
- 2003
35. Randomization tests and computational software on statistic significance of
- Author
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WenJun, ZHANG, primary, YanHong, QI, additional, and Kenneth George, Schoenly, additional
- Published
- 2002
- Full Text
- View/download PDF
36. Identification of a Novel Acinetobacter baumannii Phage-Derived Depolymerase and Its Therapeutic Application in Mice
- Author
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Can Wang, Puyuan Li, Yang Zhu, Yong Huang, Mingming Gao, Xin Yuan, Wenkai Niu, Huiying Liu, Hang Fan, Yanhong Qin, Yigang Tong, Zhiqiang Mi, and Changqing Bai
- Subjects
depolymerase ,phage-derived ,Acinetobacter baumannii ,identification ,therapeutic application ,Microbiology ,QR1-502 - Abstract
The rapid expansion of Acinetobacter baumannii clinical isolates exhibiting resistance to most or all available antibiotics is a global concern. Current treatments for infections caused by this bacterium have become less effective, and the need to explore new alternative therapies is urgent. Depolymerases derived from phages are emerging as attractive anti-virulence agents. In this study, a previously isolated A. baumannii phage (designated as vB_AbaM_IME285) was characterized, and genomic study was carried out using various bioinformatics tools. A gene predicted as encoding for the depolymerase was cloned and expressed, and the depolymerase activity of the recombinant enzyme (Dp49) was identified both in vitro and in experimental mice. The results showed that phage IME285 formed translucent halos around the plaques when inoculated onto a lawn of the host bacteria, exibiting depolymerase activity against this strain. On the basis of complete genome sequencing and bioinformatics analysis, ORF49 was speculated to be a gene encoding for the putative capsule depolymerase. The expressed recombinant Dp49 displayed an effective depolymerase activity and had a spectrum of activity similar to its parental phage IME285, which was active against 25 out of 49 A. baumannii strains. It was found that Dp49 greatly improved the inhibitory effect of serum on bacterial growth in vitro, and the administration of this enzyme significantly increased the survival rates of A. baumannii-infected mice in the animal experiment. In conclusion, the phage-encoded depolymerase Dp49 might be a promising alternative means of controlling infections mediated by multidrug-resistant A. baumannii.
- Published
- 2020
- Full Text
- View/download PDF
37. A Long-Term Forecast Analysis On Worldwide Land Uses.
- Author
-
Wenjun Zhang, Yanhong Qi, and ZhiguoZhang
- Subjects
LAND use ,FORESTS & forestry ,REGRESSION analysis ,CROPS ,FOOD ,TRAJECTORIES (Mechanics) ,AGRICULTURE ,POVERTY ,DEVELOPED countries - Abstract
More and more lands worldwide are being cultivated for food production while forests are disappearing at an unprecedented rate. This paper aims to make a long-term forecast on land uses worldwide and provide the publics, researchers, and government officials with a clear profile for land uses in the future. Data of land uses since 1961 were used to fit historical trajectories and make the forecast. The results show that trajectories of land areas can be well fitted with univariate linear regressions. The forecasts of land uses during the coming 25 years were given in detail. Areas of agricultural land, arable land, and permanent pasture land worldwide would increase by 6.6%, 7.2%, and 6.3% respectively in the year 2030 as compared to the current areas. Permanent crops land area all over the world is forecasted to increase 0.64% by 2030. By the year 2030 the areas of forests and woodland, nonarable and nonpermanent land worldwide would decrease by 2.4% and 0.9% against the current areas. All other land area in the world would dramatically decline by 6.4% by the year 2030. Overall the land area related to agriculture would tend to decrease in developed countries, industrialized countries, Europe, and North and Central America. The agriculture related land area would considerably increase in developing countries, least developed countries, low-income countries, Asia, Africa, South America, etc. Developing countries hold larger total land area than developed countries. Dramatic and continuous growth in agricultural land area of developing countries would largely contribute to the expected growth of world agricultural land area in the coming years. Population explosion, food shortage and poverty in the world, especially in developing countries, together caused the excessive cultivation of land for agricultural uses in the past years. Increasing agricultural land area exacerbates the climate changes and degradation of environment. How to limit the growth of human population is a key problem for reducing agricultural land expansion. Development and use of high-yielding and high-quality crop and animal varieties, diversification of human food sources, and technical and financial assistance to developing countries from developed countries, should also be implemented and strengthened in the future in order to slow down or even reverse the increase trend of agricultural land area. Sustainable agriculture is the effective way to stabilize the agricultural land area without food shortage. Through various techniques and measures, sustainable agriculture may meet the food production goals with minimum environmental risk. Public awareness and interest in sustainable agriculture will help realize and ease the increasing stress from agricultural land expansion. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
38. The effect of nursing participation in the design of a critical care information system: a case study in a Chinese hospital
- Author
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Yanhong Qin, Ranyun Zhou, Qiong Wu, Xiaodi Huang, Xinli Chen, Weiwei Wang, Xun Wang, Hua Xu, Jing Zheng, Siyu Qian, Changqing Bai, and Ping Yu
- Subjects
Critical care ,Intensive care ,ICU ,Information system ,Electronic health records ,EHR ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Background Intensive care information systems (ICIS) are continuously evolving to meet the ever changing information needs of intensive care units (ICUs), providing the backbone for a safe, intelligent and efficient patient care environment. Although beneficial for the international advancement in building smart environments to transform ICU services, knowledge about the contemporary development of ICIS worldwide, their usage and impacts is limited. This study aimed to fill this knowledge gap by researching the development and implementation of an ICIS in a Chinese hospital, nurses’ use of the system, and the impact of system use on critical care nursing processes and outcomes. Methods This descriptive case study was conducted in a 14-bed Respiratory ICU in a tertiary hospital in Beijing. Participative design was the method used for ICU nurses, hospital IT department and a software company to collaboratively research and develop the ICIS. Focus group discussions were conducted to understand the subjective perceptions of the nurses toward the ICIS. Nursing documentation time and quality were compared before and after system implementation. ICU nursing performance was extracted from the annual nursing performance data collected by the hospital. Results A participative design process was followed by the nurses in the ICU, the hospital IT staff and the software engineers in the company to develop and implement a highly useful ICIS. Nursing documentation was fully digitized and was significantly improved in quality and efficiency. The wrong data, missing data items and calculation errors were significantly reduced. Nurses spent more time on direct patient care after the introduction of the ICIS. The accuracy and efficiency of medication administration was also improved. The outcome was improvement in ward nursing performance as measured by ward management, routine nursing practices, disinfection and isolation, infection rate and mortality rate. Conclusions Nurses in this ICU unit in China actively participated in the ICIS development and fully used the system to document care. Introduction of the ICIS led to significant improvement in quality and efficiency in nursing documentation, medication order transcription and administration. It allowed nurses to spend more time with patients to improve quality of care. These led to improvement in overall nursing performance. Further study should investigate how the ICIS system contributes to the improvement in decision making of ICU nurses and intensivists.
- Published
- 2017
- Full Text
- View/download PDF
39. Corrigendum: The Capsule Depolymerase Dpo48 Rescues Galleria mellonella and Mice From Acinetobacter baumannii Systemic Infections
- Author
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Yannan Liu, Sharon Shui Yee Leung, Yatao Guo, Lili Zhao, Ning Jiang, Liyuan Mi, Puyuan Li, Can Wang, Yanhong Qin, Zhiqiang Mi, Changqing Bai, and Zhancheng Gao
- Subjects
Acinetobacter baumannii ,capsule depolymerase ,Galleria mellonella model ,mouse model ,systemic infection ,antivirulence ,Microbiology ,QR1-502 - Published
- 2019
- Full Text
- View/download PDF
40. The Capsule Depolymerase Dpo48 Rescues Galleria mellonella and Mice From Acinetobacter baumannii Systemic Infections
- Author
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Yannan Liu, Sharon Shui Yee Leung, Yatao Guo, Lili Zhao, Ning Jiang, Liyuan Mi, Puyuan Li, Can Wang, Yanhong Qin, Zhiqiang Mi, Changqing Bai, and Zhancheng Gao
- Subjects
Acinetobacter baumannii ,capsule depolymerase ,Galleria mellonella model ,mouse model ,systemic infection ,antivirulence ,Microbiology ,QR1-502 - Abstract
The emergence of multidrug- and extensively drug-resistant Acinetobacter baumannii has made it difficult to treat and control infections caused by this bacterium. Thus, alternatives to conventional antibiotics for management of severe A. baumannii infections is urgently needed. In our previous study, we found that a capsule depolymerase Dpo48 could strip bacterial capsules, and the non-capsuled A. baumannii were significantly decreased in the presence of serum complement in vitro. Here, we further explored its potential as a therapeutic agent for controlling systemic infections caused by extensively drug-resistant A. baumannii. Prior to mammalian studies, the anti-virulence efficacy of Dpo48 was first tested in a Galleria mellonella infection model. Survival rate of Dpo48-pretreated bacteria or Dpo48 treatment group was significantly increased compared to the infective G. mellonella without treatment. Furthermore, the safety and therapeutic efficacy of Dpo48 to mice were evaluated. The mice treated with Dpo48 displayed normal serum levels of TBIL, AST, ALT, ALP, Cr, BUN and LDH, while no significant histopathology changes were observed in tissues of liver, spleen, lung, and kidney. Treatment with Dpo48 could rescue normal and immunocompromised mice from lethal peritoneal sepsis, with the bacterial counts in blood, liver, spleen, lung, and kidney significantly reduced by 1.4–3.3 log colony-forming units at 4 h posttreatment. Besides, the hemolysis and cytotoxicity assays showed that Dpo48 was non-homolytic to human red blood cells and non-toxic to human lung, liver and kidney cell lines. Overall, the present study demonstrated the promising potential of capsule depolymerases as therapeutic agents to prevent antibiotic-resistant A. baumannii infections.
- Published
- 2019
- Full Text
- View/download PDF
41. VOC Characteristics and Their Source Apportionment in the Yangtze River Delta Region during the G20 Summit
- Author
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Cheng Chen, Lingrui Wang, Yanhong Qin, Yunjiang Zhang, Shanshan Zheng, Yifan Yang, Shiguang Jin, and Xiaoxiao Yang
- Subjects
VOCs ,control and deregulation ,positive matrix factorization (PMF) ,Yangtze river delta ,Meteorology. Climatology ,QC851-999 - Abstract
To evaluate the effectiveness of measures to reduce the levels of volatile organic compounds (VOCs), which are important precursors of ground-level ozone formation, the real-time monitoring data of VOCs at the urban Zhaohui supersite (ZH), the Dianshan Lake regional supersite (DSL) and the urban Yixing station (YX) in the Yangtze River Delta region were analyzed from 23 August to 15 September 2016 during the G20 Hangzhou Summit. The average mole ratios of VOCs at the three sites were 6.56, 21.33 and 19.62 ppb, respectively, which were lower than those (13.65, 27.72 and 21.38 ppb) after deregulation. The characteristics of the VOCs varied during the different control periods. Synoptic conditions and airmass transport played an important role in the transport and accumulation of VOCs and other pollutants, which affected the control effects. Using the positive matrix factorization (PMF) method in source apportionment, five factors were identified, namely, vehicle exhaust (19.66–31.47%), plants (5.59–17.07%), industrial emissions (13.14–33.82%), fuel vaporization (12.83–26.34%) and solvent usage (17.84–28.95%) for the ZH and YX sites. Factor 4 was identified as fuel vaporization + incomplete combustion (21.69–25.35%) at the DSL site. The Non-parametric Wind Regression (NWR) method showed that regional transport was the main factor influencing the VOC distribution.
- Published
- 2021
- Full Text
- View/download PDF
42. Prevalence and invasiveness of community-acquired methicillin-resistant Staphylococcus aureus: A meta-analysis
- Author
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Shipeng Li, Juan Li, Yanhong Qiao, Xue Ning, Ting Zeng, and Xuzhuang Shen
- Subjects
Community-acquired methicillin-resistant Staphylococcus aureus ,invasive infection ,virulence ,Pathology ,RB1-214 ,Microbiology ,QR1-502 - Abstract
Background: Reports suggest that the prevalence of community-acquired methicillin-resistant Staphylococcus aureus (CA-MRSA) has increased, and that CA-MRSA is more virulent than healthcare-associated (HA)-MRSA. Aims: The aim of this study is to gain a better understanding of the invasiveness and prevalence of CA-MRSA in patients; we systematically reviewed the literature by conducting a meta-analysis. Materials and Methods: We searched the MEDLINE and PUBMED databases from the year these databases were established to January 2013. Results: The pooled CA-MRSA prevalence among 50,737 patients from 33 studies was 39.0% (range, 30.8-47.8%). The pooled CA-MRSA prevalence rates among pediatric and adult patients with MRSA infection were 50.2% (range, 37.5-62.8%) and 42.3% (range, 16.4-73.3%), respectively. The pooled CA-MRSA prevalence rates of MRSA-infected patients in Asia, Europe, and North America were 23.1% (range, 12.0-39.8%), 37.4% (range, 21.1-56.4%), and 47.4% (range, 35.8-59.4%), respectively. Using the random effects model, we determined that the pooled odds ratio of invasive infections in CA- and HA-MRSA was 0.30 (95% confidence interval: 0.08-1.10; P = 0.07, test for heterogeneity P < 0.00001). Conclusions: The prevalence of CA-MRSA in MRSA infection varied with area and population. No difference in the ability to cause invasive infections was found between CA- and HA-MRSA. This finding challenges the view that CA-MRSA is more virulent than HA-MRSA.
- Published
- 2014
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43. Epigenetic Changes in the Regulation of Nicotiana tabacum Response to Cucumber Mosaic Virus Infection and Symptom Recovery through Single-Base Resolution Methylomes
- Author
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Chenguang Wang, Chaonan Wang, Wenjie Xu, Jingze Zou, Yanhong Qiu, Jun Kong, Yunshu Yang, Boyang Zhang, and Shuifang Zhu
- Subjects
Nicotiana tabacum ,Cucumber mosaic virus ,DNA methylation ,gene expression ,RNAi ,demethylation ,Microbiology ,QR1-502 - Abstract
Plants have evolved multiple mechanisms to respond to viral infection. These responses have been studied in detail at the level of host immune response and antiviral RNA silencing (RNAi). However, the possibility of epigenetic reprogramming has not been thoroughly investigated. Here, we identified the role of DNA methylation during viral infection and performed reduced representation bisulfite sequencing (RRBS) on tissues of Cucumber mosaic virus (CMV)-infected Nicotiana tabacum at various developmental stages. Differential methylated regions are enriched with CHH sequence contexts, 80% of which are located on the gene body to regulate gene expression in a temporal style. The methylated genes depressed by methyltransferase inhibition largely overlapped with methylated genes in response to viral invasion. Activation in the argonaute protein and depression in methyl donor synthase revealed the important role of dynamic methylation changes in modulating viral clearance and resistance signaling. Methylation-expression relationships were found to be required for the immune response and cellular components are necessary for the proper defense response to infection and symptom recovery.
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- 2018
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44. Impulsive Control Strategy for a Nonautonomous Food-Chain System with Multiple Delays
- Author
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Baodan Tian, Yanhong Qiu, and Yucai Ding
- Subjects
Engineering (General). Civil engineering (General) ,TA1-2040 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
A nonautonomous food-chain system with Holling II functional response is studied, in which multiple delays of digestion are also considered. By applying techniques in differential inequalities, comparison theorem in ordinary differential equations, impulsive differential equations, and functional differential equations, some effective control strategies are obtained for the permanence of the system. Furthermore, effects of some important coefficients and delays on the permanence of the system are intuitively and clearly shown by series of numerical examples.
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- 2016
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45. Almost Periodic Solution for an Epidemic Prey-Predator System with Impulsive Effects and Multiple Delays
- Author
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Baodan Tian, Ning Chen, and Yanhong Qiu
- Subjects
Mathematics ,QA1-939 - Abstract
A nonautonomous epidemic prey-predator system with impulsive effects and multiple delays is considered; further, there is an epidemic disease in the predator. By the mean-value theorem of multiple variables, integral inequalities, differential inequalities, and other mathematical analysis skills, sufficient conditions which guarantee the permanence of the system are obtained. Furthermore, by constructing a series of Lyapunov functionals it is proved that there exists a unique uniformly asymptotically stable almost periodic solution of the system.
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- 2015
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46. Complete genomic sequence and comparative analysis of the genome segments of sweet potato chlorotic stunt virus in China.
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Yanhong Qin, Li Wang, Zhenchen Zhang, Qi Qiao, Desheng Zhang, Yuting Tian, Shuang Wang, Yongjiang Wang, and Zhaoling Yan
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Medicine ,Science - Abstract
BACKGROUND:Sweet potato chlorotic stunt virus (family Closteroviridae, genus Crinivirus) features a large bipartite, single-stranded, positive-sense RNA genome. To date, only three complete genomic sequences of SPCSV can be accessed through GenBank. SPCSV was first detected from China in 2011, only partial genomic sequences have been determined in the country. No report on the complete genomic sequence and genome structure of Chinese SPCSV isolates or the genetic relation between isolates from China and other countries is available. METHODOLOGY/PRINCIPAL FINDINGS:The complete genomic sequences of five isolates from different areas in China were characterized. This study is the first to report the complete genome sequences of SPCSV from whitefly vectors. Genome structure analysis showed that isolates of WA and EA strains from China have the same coding protein as isolates Can181-9 and m2-47, respectively. Twenty cp genes and four RNA1 partial segments were sequenced and analyzed, and the nucleotide identities of complete genomic, cp, and RNA1 partial sequences were determined. Results indicated high conservation among strains and significant differences between WA and EA strains. Genetic analysis demonstrated that, except for isolates from Guangdong Province, SPCSVs from other areas belong to the WA strain. Genome organization analysis showed that the isolates in this study lack the p22 gene. CONCLUSIONS/SIGNIFICANCE:We presented the complete genome sequences of SPCSV in China. Comparison of nucleotide identities and genome structures between these isolates and previously reported isolates showed slight differences. The nucleotide identities of different SPCSV isolates showed high conservation among strains and significant differences between strains. All nine isolates in this study lacked p22 gene. WA strains were more extensively distributed than EA strains in China. These data provide important insights into the molecular variation and genomic structure of SPCSV in China as well as genetic relationships among isolates from China and other countries.
- Published
- 2014
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47. Dynamical Behavior for a Food-Chain Model with Impulsive Harvest and Digest Delay
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Baodan Tian, Shouming Zhong, Ning Chen, and Yanhong Qiu
- Subjects
Mathematics ,QA1-939 - Abstract
We investigate the dynamics of a food-chain system with digest delay and periodic harvesting for the prey. By using the comparison theorem, small amplitude skills in the impulsive differential equation, and a special qualitative analysis method in the delay differential equation, we prove that there exists a predators-eradication periodic solution which is globally attractive and show that the pest population can be controlled under the economic threshold level and the system can be uniformly permanent when the harvest period T is long enough or the harvesting rate δ is not too large. Furthermore, we perform a series of numerical simulations to display the effects of the digest delay and periodic harvesting on the dynamic behavior of the food-chain system.
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- 2014
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48. A New Dioic Acid from a wbl Gene Mutant of Deepsea-Derived Streptomyces somaliensis SCSIO ZH66
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Huiming Huang, Huayue Li, Yanhong Qiu, Lukuan Hou, Jianhua Ju, and Wenli Li
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deepsea-derived Streptomyces ,dioic acid ,wblAso ,Biology (General) ,QH301-705.5 - Abstract
The wblAso gene functions as a global regulatory gene in a negative manner in deepsea-derived Streptomyces somaliensis SCSIO ZH66. A new dioic acid (1) as well as two known butenolides (2 and 3) were isolated from the ΔwblAso mutant strain of S. somaliensis SCSIO ZH66. The structure of 1 was elucidated by a combination of spectroscopic analyses, including MS and NMR techniques. In the cell growth inhibitory evaluation, compound 3 exhibited moderate activity against the human hepatic carcinoma cell line (Huh7.5) with an IC50 value of 19.4 μg/mL, while compounds 1 and 2 showed null activity up to 100 μg/mL.
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- 2016
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49. Ophiopogonin D of Ophiopogon japonicus ameliorates renal function by suppressing oxidative stress and inflammatory response in streptozotocin-induced diabetic nephropathy rats
- Author
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Yanhong Qiao, Haiyan Jiao, Feng Wang, and Huimin Niu
- Subjects
hyperglycemia ,pro-inflammatory cytokines ,oxidative damage ,renal dysfunction ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Ophiopogonin D (OP-D) is the principal pharmacologically active ingredient from Ophiopogon japonicas, which has been demonstrated to have numerous pharmacological activities. However, its protective effect against renal damage in streptozotocin (STZ)-induced diabetic nephropathy (DN) rats remains unclear. The present study was performed to investigate the protective effect of OP-D in the STZ-induced DN rat model. DN rats showed renal dysfunction, as evidenced by decreased serum albumin and creatinine clearance, along with increases in serum creatinine, blood urea nitrogen, TGF-β1, and kidney hypertrophy, and these were reversed by OP-D. In addition, STZ induced oxidative damage and inflammatory response in diabetic kidney tissue. These abnormalities were reversed by OP-D treatment. The findings obtained in the present study indicated that OP-D might possess the potential to be a therapeutic agent against DN via inhibiting renal inflammation and oxidative stress.
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