39 results on '"Yang-Hong Dai"'
Search Results
2. Incorporating knowledge of disease-defining hub genes and regulatory network into a machine learning-based model for predicting treatment response in lupus nephritis after the first renal flare
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Ding-Jie Lee, Ping-Huang Tsai, Chien-Chou Chen, and Yang-Hong Dai
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Lupus nephritis ,Renal flare ,Transcriptomics ,Machine learning ,Prediction model ,Medicine - Abstract
Abstract Background Identifying candidates responsive to treatment is important in lupus nephritis (LN) at the renal flare (RF) because an effective treatment can lower the risk of progression to end-stage kidney disease. However, machine learning (ML)-based models that address this issue are lacking. Methods Transcriptomic profiles based on DNA microarray data were extracted from the GSE32591 and GSE112943 datasets. Comprehensive bioinformatics analyses were performed to identify disease-defining genes (DDGs). Peripheral blood samples (GSE81622, GSE99967, and GSE72326) were used to evaluate the effect of DDGs. Single-sample gene set enrichment analysis (ssGSEA) scores of the DDGs were calculated and correlated with specific immunology genes listed in the nCounter panel. GSE60681 and GSE69438 were used to examine the ability of the DDGs to discriminate LN from other renal diseases. K-means clustering was used to obtain the separate gene sets. The clustering results were extended to data derived using the nCounter technique. The least absolute shrinkage and selection operator (LASSO) algorithm was used to identify genes with high predictive value for treatment response after the first RF in each cluster. LASSO models with tenfold validation were built in GSE200306 and assessed by receiver operating characteristic (ROC) analysis with area under curve (AUC). The models were validated by using an independent dataset (GSE113342). Results Forty-five hub genes specific to LN were identified. Eight optimal disease-defining clusters (DDCs) were identified in this study. Th1 and Th2 cell differentiation pathway was significantly enriched in DDC-6. LCK in DDC-6, whose expression positively correlated with various subsets of T cell infiltrations, was found to be differentially expressed between responders and non-responders and was ranked high in regulatory network analysis. Based on DDC-6, the prediction model had the best performance (AUC: 0.75; 95% confidence interval: 0.44–1 in the testing set) and high precision (0.83), recall (0.71), and F1 score (0.77) in the validation dataset. Conclusions Our study demonstrates that incorporating knowledge of biological phenotypes into the ML model is feasible for evaluating treatment response after the first RF in LN. This knowledge-based incorporation improves the model's transparency and performance. In addition, LCK may serve as a biomarker for T-cell infiltration and a therapeutic target in LN.
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- 2023
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3. Significant muscle loss after stereotactic body radiotherapy predicts worse survival in patients with hepatocellular carcinoma
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Jen-Fu Yang, Wen-Yen Huang, Cheng-Hsiang Lo, Meei-Shyuan Lee, Chun-Shu Lin, Po-Chien Shen, Yang-Hong Dai, Ying-Fu Wang, and Teng-Wei Chen
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Medicine ,Science - Abstract
Abstract The relationship between sarcopenia and treatment outcomes, especially in patients with hepatocellular carcinoma (HCC) undergoing stereotactic body radiotherapy (SBRT) has not been well-explored. This study aimed to investigate the effects of sarcopenia on the survival and toxicity after SBRT in patients with HCC. We included 137 patients with HCC treated with SBRT between 2008 and 2018. Sarcopenia was defined as a skeletal muscle index (SMI) of
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- 2022
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4. Diagnostic utility of procalcitonin in scrub typhus
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Guan-Liang Chen, Wei-Ting Liu, Tsung-Ying Yu, Gen-Min Lin, Yang-Hong Dai, and Shiue-Wei Lai
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procalcitonin ,c-reactive protein ,scrub typhus ,Medicine ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Background: Procalcitonin (PCT) and C-reactive protein (CRP) are two common and practical biomarkers for various diseases. However, their roles in scrub typhus (ST) have not been extensively investigated. Aim: In this study, we compared the effectiveness of PCT and CRP levels and the PCT/CRP ratio and evaluated their predictive performance in the diagnosis of ST. Methods: Patients with acute febrile illness and suspected ST infection treated at our hospital between January 2015 and December 2016 were retrospectively evaluated. An indirect immunofluorescent assay was used to confirm the presence of ST. Documented information included initial clinical images and laboratory data including PCT or CRP. Receiver operating characteristic curve analysis with area under curve (AUC) identified the optimal PCT, CRP, and PCT/CRP ratio cutoff values for the diagnosis of ST. Results: Among 189 patients with acute febrile illness, 153 (89.9%) tested positive for ST. CRP and PCT level data were available in 168 (88.8%) and 42 (22.2%) patients, respectively. Thirty patients (15.9%) underwent both CRP and PCT tests. ST-positive samples contained significantly higher levels of PCT (P < 0.001) and CRP (P = 0.015) than those of the 36 non-ST samples. No difference was observed in the PCT/CRP ratio (P = 0.477). The optimal cutoff values were 0.27 ng/mL, 1.65 mg/dL and 0.036 for PCT and CRP levels and PCT/CRP ratio, respectively. PCT level showed the best diagnostic performance (sensitivity = 89.3%; specificity = 92.3%; AUC = 0.894; 95% confidence interval [CI] =0.753–0.925). Combining PCT and CRP levels based on the respective optimal cutoff points further improved the performance of ST diagnosis (AUC = 0.906, 95% CI = 0.894–0.923), with 89.5% sensitivity and 91.7% specificity. PCT level was positively correlated with liver enzyme levels, and acute hepatitis could be identified with high specificity (100%) using a cutoff PCT threshold of 0.36 ng/mL. Conclusion: PCT is useful in ST diagnosis, and pending conformation in future studies may reflect hepatic dysfunction at initial presentation.
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- 2022
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5. Gene-associated methylation status of ST14 as a predictor of survival and hormone receptor positivity in breast Cancer
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Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Cheng-Hsiang Lo, Jen-Fu Yang, Chun-Shu Lin, Hsing-Lung Chao, and Wen-Yen Huang
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ST14 ,Matriptase ,DNA methylation ,Breast Cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Genomic profiles of specific gene sets have been established to guide personalized treatment and prognosis for patients with breast cancer (BC). However, epigenomic information has not yet been applied in a clinical setting. ST14 encodes matriptase, a proteinase that is widely expressed in BC with reported prognostic value. Methods In this present study, we evaluated the effect of ST14 DNA methylation (DNAm) on overall survival (OS) of patients with BC as a representative example to promote the use of the epigenome in clinical decisions. We analyzed publicly available genomic and epigenomic data from 1361 BC patients. Methylation was characterized by the β-value from CpG probes based on sequencing with the Illumina Human 450 K platform. Results A high mean DNAm (β > 0.6779) across 34 CpG probes for ST14, as the gene-associated methylation (GAM) pattern, was associated with a longer OS after adjusting age, stage, histology and molecular features in Cox model (p value
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- 2021
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6. Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy
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Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Cheng-Hsiang Lo, Jen-Fu Yang, Chun-Shu Lin, Hsing-Lung Chao, and Wen-Yen Huang
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Medicine ,Genetics ,QH426-470 - Abstract
Abstract In the era of immunotherapy, there lacks of a reliable genomic predictor to identify optimal patient populations in combined radiotherapy and immunotherapy (CRI). The purpose of this study is to investigate whether genomic scores defining radiosensitivity are associated with immune response. Genomic data from Merged Microarray-Acquired dataset (MMD) were established and the Cancer Genome Atlas (TCGA) were obtained. Based on rank-based regression model including 10 genes, radiosensitivity index (RSI) was calculated. A total of 12832 primary tumours across 11 major cancer types were analysed for the association with DNA repair, cellular stemness, macrophage polarisation, and immune subtypes. Additional 585 metastatic tissues were extracted from MET500. RSI was stratified into RSI-Low and RSI-High by a cutpoint of 0.46. Proteomic differential analysis was used to identify significant proteins according to RSI categories. Gene Set Variance Analysis (GSVA) was applied to measure the genomic pathway activity (18 genes for T-cell inflamed activity). Kaplan-Meier analysis was performed for survival analysis. RSI was significantly associated with homologous DNA repair, cancer stemness and immune-related molecular features. Lower RSI was associated with higher fraction of M1 macrophage. Differential proteomic analysis identified significantly higher TAP2 expression in RSI-Low colorectal tumours. In the TCGA cohort, dominant interferon-γ (IFN-γ) response was characterised by low RSI and predicted better response to programmed cell death 1 (PD-1) blockade. In conclusion, in addition to radiation response, our study identified RSI to be associated with various immune-related features and predicted response to PD-1 blockade, thus, highlighting its potential as a candidate biomarker for CRI.
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- 2021
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7. Clinical outcome and pathologic correlation of stereotactic body radiation therapy as a bridge to transplantation for advanced hepatocellular carcinoma: a case series
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Ying-Fu Wang, Yang-Hong Dai, Chun-Shu Lin, Hao-Chih Chang, Po-Chien Shen, Jen-Fu Yang, Chih-Weim Hsiang, Cheng-Hsiang Lo, and Wen-Yen Huang
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Hepatocellular carcinoma ,Liver transplantation ,Radiotherapy ,Stereotactic body radiotherapy ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Stereotactic body radiotherapy (SBRT) is an emerging modality for hepatocellular carcinoma (HCC). However, there is scant information about its safety and effectiveness in the neoadjuvant setting prior to liver transplantation (LT). We present the clinical outcome and pathologic assessment of SBRT followed by LT for patients with advanced HCC. Methods This retrospective study included HCC patients treated with neoadjuvant SBRT prior to LT between 2009 and 2018. Radiographic response and adverse effects, including radiation-induced liver disease (RILD), were evaluated. Pathologic response was assessed by the percentage of tumor necrosis relative to the total tumor volume. Overall survival (OS) and recurrence-free survival (RFS) were calculated using the Kaplan–Meier method. Results Fourteen patients underwent SBRT for a total of 25 HCC lesions, followed by LT. The median tumor size was 4.45 cm in diameter, and the median prescribed dose was 45 Gy in 5 fractions. SBRT provided significant AFP reduction, 100% infield control, and a 62.5% response rate. The maximum detected toxicity included grade 3 thrombocytopenia and two grade 3–4 hyperbilirubinemia. One patient developed non-classic RILD. Patients were bridged to LT with a median time of 8.4 months after SBRT, and 23.1% of them achieved a complete pathologic response. The median OS and RFS were 37.8 and 18.3 months from the time of LT, respectively. Conclusions SBRT provides favorable tumor control and acceptable adverse effects for patients awaiting LT. Further prospective studies to test SBRT as a bridging therapy for LT are feasible.
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- 2021
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8. Development and Validation of a Nomogram for Patients with Nonmetastatic BCLC Stage C Hepatocellular Carcinoma after Stereotactic Body Radiotherapy
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Wen-Yen Huang, Chiao-Ling Tsai, Jenny Y. Que, Cheng-Hsiang Lo, Yu-Ju Lin, Yang-Hong Dai, Jen-Fu Yang, Po-Chien Shen, Mei-Hsuan Lee, and Jason Chia-Hsien Cheng
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stereotactic body radiotherapy ,nomogram ,hepatocellular carcinoma ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background: Stereotactic body radiotherapy (SBRT) is an emerging treatment modality for hepatocellular carcinoma (HCC) with promising outcome. However, appropriate survival prediction models are scarce. This study aimed to develop a simple and clinically useful prognostic nomogram for patients with nondistant metastatic Barcelona Clinic Liver Cancer (BCLC) stage C HCC undergoing SBRT. Methods: The data were based on a prospective multi-institutional registry enrolling 246 patients with nondistant metastatic BCLC stage C HCC treated with SBRT between January 1, 2008 and December 31, 2016. They were randomly divided into two subsets: 164 into the development cohort and 82 into the validation cohort. We identified and included prognostic factors for survival to derive a nomogram in the development cohort. The predictability of the nomogram was evaluated in the validation cohort. The area under the receiver operating characteristic curve (AUROC) and the calibration plot were used to evaluate the performance of the nomogram. Results: The median survival was 13.5 months, with 1- and 2-year overall survival (OS) rates of 55.0 and 32.9%, respectively. Number of tumors, largest tumor size, macrovascular invasion, Child-Turcotte-Pugh class, and biologically effective dose were significantly associated with OS (p < 0.05). These predictors were included to develop a nomogram with an AUROC of 0.77 (0.73–0.87). The prediction model was well calibrated in the validation cohort. The OS for patients who were divided by their risk scores differed significantly (p < 0.001). Conclusions: The nomogram we generated had discriminatory and satisfactory predictability for OS among nonmetastatic BCLC stage C HCC patients treated with SBRT. It demands further validations with cross-country data to confirm its worldwide usefulness.
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- 2020
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9. Bioinformatic Analyses of Peripheral Blood Transcriptome Identify Altered Neutrophil-Related Pathway and Different Transcriptomic Profiles for Acute Pancreatitis in Patients with and without Chylomicronemia Syndrome
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Chia-Lun Liu and Yang-Hong Dai
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acute pancreatitis ,chylomicronemia syndrome ,neutrophil degranulation ,neutrophil ,peripheral blood ,Microbiology ,QR1-502 - Abstract
Acute pancreatitis (AP) is a serious inflammatory condition of the pancreas that can be associated with chylomicronemia syndrome (CS). Currently, no study has explored the differences between non-CS-associated AP and CS-associated AP in terms of gene expression. Transcriptomic profiles of blood samples from patients with AP were retrieved from GSE194331 (non-CS-associated) and GSE149607 (CS-associated). GSE31568 was used to examine the linkage between non-CS-associated AP and the expression of micro RNAs (miRNAs). Differentially expressed genes (DEGs) were identified, a gene regulatory network was constructed, and hub genes were defined. Subsequently, single-sample gene set enrichment analysis (ssGSEA) scores of hub genes were calculated to represent their regulatory-level activity. A total of 1851 shared DEGs were identified between non-CS-associated and CS-associated AP. Neutrophils were significantly enriched in both conditions. In non-CS-associated AP, miRNAs including hsa-miR-21, hsa-miR-146a, and hsa-miR-106a demonstrated a lower expression level as compared with the healthy control. Furthermore, the expression patterns and regulatory activities were largely opposite between non-CS-associated and CS-associated AP, with significantly lower estimated neutrophils in the latter case. In summary, we found that the regulation of neutrophils was altered in AP. There was a different gene expression pattern and lower estimated neutrophil infiltration in CS-associated AP. Whether these findings are clinically significant requires further investigation.
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- 2023
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10. Stereotactic ablative radiotherapy versus conventionally fractionated radiotherapy in the treatment of hepatocellular carcinoma with portal vein invasion: a retrospective analysis
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Jen-Fu Yang, Cheng-Hsiang Lo, Meei-Shyuan Lee, Chun-Shu Lin, Yang-Hong Dai, Po-Chien Shen, Hsing-Lung Chao, and Wen-Yen Huang
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Hepatocellular carcinoma ,Portal vein invasion ,Portal vein thrombosis ,Stereotactic ablative radiotherapy ,Stereotactic body radiotherapy ,Conventionally fractionated radiotherapy ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background This study aimed to compare the clinical outcomes of stereotactic ablative radiotherapy (SABR) and conventionally fractionated radiotherapy (CFRT) in hepatocellular carcinoma (HCC) patients with portal vein invasion (PVI). Methods HCC patients with PVI treated with radiotherapy from 2007 to 2016 were analysed. CFRT was administered at a median dose of 51.5 Gy (interquartile range, 45–54 Gy) with 1.8–3 Gy per fraction. SABR was administered at a median dose of 45 Gy (interquartile range, 40–48 Gy) with 6–12.5 Gy per fraction. Treatment efficacy, toxicity, and associated predictors were assessed. Results Among the 104 evaluable patients (45 in the SABR group and 59 in the CFRT group), the overall response rate (ORR, complete and partial response) was significantly higher in the SABR group than the CFRT group (62.2% vs. 33.8%, p = 0.003). The 1-year overall survival (OS) rate (34.9% vs. 15.3%, p = 0.012) and in-field progression-free survival (IFPS) rate (69.6% vs. 32.2%, p = 0.007) were also significantly higher in the SABR vs. CFRT group. All 3 rates remained higher in the SABR group after propensity score matching. Multivariable analysis identified SABR and a biologically effective dose ≥65 Gy as favourable predicators of OS. There was no difference between treatment groups in the incidence of radiation-induced liver disease or increase of Child-Pugh score ≥ 2 within 3 months of radiotherapy. Conclusions SABR was superior to CFRT in terms of ORR, OS, and IFPS. We suggest that SABR should be the preferred technique for HCC patients with PVI.
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- 2019
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11. Novel Inflammasome-Based Risk Score for Predicting Survival and Efficacy to Immunotherapy in Early-Stage Non-Small Cell Lung Cancer
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Chih-Cheng Tsao, Hsin-Hung Wu, Ying-Fu Wang, Po-Chien Shen, Wen-Ting Wu, Huang-Yun Chen, and Yang-Hong Dai
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early-stage NSCLC ,immunotherapy ,immune checkpoint inhibitor ,inflammasome ,IL1B ,CASP-1 ,Biology (General) ,QH301-705.5 - Abstract
Immune checkpoint inhibitors (ICI) for early-stage non-small cell lung cancer (NSCLC) have been approved to improve outcomes and reduce recurrence. Biomarkers for patient selection are needed. In this paper, we proposed an inflammasome-based risk score (IRS) system for prognosis and prediction of ICI response for early-stage NSCLC. Cox regression analysis was used to identify significant genes (from 141 core inflammasome genes) for overall survival (OS) in a microarray discovery cohort (n = 467). IRS was established and independently validated by other datasets (n = 1320). We evaluated the inflammasome signaling steps based on five gene sets, which were IL1B-, CASP-1-, IL18-, GSDMD-, and inflammasome-regulated genes. Gene set enrichment analysis, the Kaplan–Meier curve, receiver operator characteristic with area under curve (AUC) analysis, and advanced bioinformatic tools were used to confirm the ability of IRS in prognosis and classification of patients into ICI responders and non-responders. A 30-gene IRS was developed, and it indicated good risk stratification at 10-year OS (AUC = 0.726). Patients were stratified into high- and low-risk groups based on optimal cutoff points, and high-risk IRS had significantly poorer OS and relapse-free survival. In addition, the high-risk group was characterized by an inflamed immunophenotype and higher proportion of ICI responders. Furthermore, expression of SLAMF8 was the key gene in IRS and indicated good correlation with biomarkers associated with immunotherapy. It could serve as a therapeutic target in the clinical setting of immunotherapy.
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- 2022
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12. The intracellular seven amino acid motif EEGEVFL is required for matriptase vesicle sorting and translocation to the basolateral plasma membrane.
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Chun-Che Tseng, Bailing Jia, Robert B Barndt, Yang-Hong Dai, Yu Hsin Chen, Po-Wen A Du, Jehng-Kang Wang, Hung-Jen Tang, Chen-Yong Lin, and Michael D Johnson
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Medicine ,Science - Abstract
Matriptase plays important roles in epithelial integrity and function, which depend on its sorting to the basolateral surface of cells, where matriptase zymogen is converted to an active enzyme in order to act on its substrates. After activation, matriptase undergoes HAI-1-mediated inhibition, internalization, transcytosis, and secretion from the apical surface into the lumen. Matriptase is a mosaic protein with several distinct protein domains and motifs, which are a reflection of matriptase's complex cellular itinerary, life cycle, and the tight control of its enzymatic activity. While the molecular determinants for various matriptase regulatory events have been identified, the motif(s) required for translocation of human matriptase to the basolateral plasma membrane is unknown. The motif previously identified in rat matriptase is not conserved between the rodent and the primate. We, here, revisit the question for human matriptase through the use of a fusion protein containing a green fluorescent protein linked to the matriptase N-terminal fragment ending at Gly-149. A conserved seven amino acid motif EEGEVFL, which is similar to the monoleucine C-terminal to an acidic cluster motif involved in the basolateral targeting for some growth factors, has been shown to be required for matriptase translocation to the basolateral plasma membrane of polarized MDCK cells. Furthermore, time-lapse video microscopy showed that the motif appears to be required for entry into the correct transport vesicles, by which matriptase can undergo rapid trafficking and translocate to the plasma membrane. Our study reveals that the EEGEVFL motif is necessary, but may not be sufficient, for matriptase basolateral membrane targeting and serves as the basis for further research on its pathophysiological roles.
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- 2020
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13. Radiomics-Based Predictive Model of Radiation-Induced Liver Disease in Hepatocellular Carcinoma Patients Receiving Stereo-Tactic Body Radiotherapy
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Po-Chien Shen, Wen-Yen Huang, Yang-Hong Dai, Cheng-Hsiang Lo, Jen-Fu Yang, Yu-Fu Su, Ying-Fu Wang, Chia-Feng Lu, and Chun-Shu Lin
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radiation-induced liver disease ,stereotactic body radiation therapy ,radiomics ,predictive model ,decision making ,Biology (General) ,QH301-705.5 - Abstract
(1) Background: The application of stereotactic body radiation therapy (SBRT) in hepatocellular carcinoma (HCC) limited the risk of the radiation-induced liver disease (RILD) and we aimed to predict the occurrence of RILD more accurately. (2) Methods: 86 HCC patients were enrolled. We identified key predictive factors from clinical, radiomic, and dose-volumetric parameters using a multivariate analysis, sequential forward selection (SFS), and a K-nearest neighbor (KNN) algorithm. We developed a predictive model for RILD based on these factors, using the random forest or logistic regression algorithms. (3) Results: Five key predictive factors in the training set were identified, including the albumin–bilirubin grade, difference average, strength, V5, and V30. After model training, the F1 score, sensitivity, specificity, and accuracy of the final random forest model were 0.857, 100, 93.3, and 94.4% in the test set, respectively. Meanwhile, the logistic regression model yielded an F1 score, sensitivity, specificity, and accuracy of 0.8, 66.7, 100, and 94.4% in the test set, respectively. (4) Conclusions: Based on clinical, radiomic, and dose-volumetric factors, our models achieved satisfactory performance on the prediction of the occurrence of SBRT-related RILD in HCC patients. Before undergoing SBRT, the proposed models may detect patients at high risk of RILD, allowing to assist in treatment strategies accordingly.
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- 2022
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14. Pretreatment Neutrophil-to-Lymphocyte Ratio Predicts Survival and Liver Toxicity in Patients With Hepatocellular Carcinoma Treated With Stereotactic Ablative Radiation Therapy
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Chun Shu Lin, Jeng Fong Chiou, Po Chien Shen, Yang Hong Dai, Wei Chou Chang, Shang Wen Chen, Chun You Chen, Jen Fu Yang, Wen Yen Huang, Jason Chia-Hsien Cheng, Hsin Lun Lee, Cheng-Hsiang Lo, Chih Weim Hsiang, and Meei-Shyuan Lee
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Cancer Research ,medicine.medical_specialty ,Radiation ,Receiver operating characteristic ,business.industry ,medicine.medical_treatment ,fungi ,Area under the curve ,Retrospective cohort study ,SABR volatility model ,medicine.disease ,Gastroenterology ,Confidence interval ,030218 nuclear medicine & medical imaging ,Radiation therapy ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Internal medicine ,Hepatocellular carcinoma ,medicine ,Radiology, Nuclear Medicine and imaging ,Neutrophil to lymphocyte ratio ,business - Abstract
PURPOSE The objective of this study was to determine whether pretreatment neutrophil-to-lymphocyte ratio (NLR) could predict survival outcomes and liver toxicity in hepatocellular carcinoma (HCC) patients treated with stereotactic ablative radiation therapy (SABR). METHODS AND MATERIALS In this retrospective study we collected pretreatment NLR of HCC patients treated with SABR between December 2007 and August 2018 and determined its association with overall survival (OS), progression-free survival, and radiation-related liver toxicity defined as an increase in the Child-Turcotte-Pugh score by ≥2 within 3 months after SABR in the absence of disease progression. RESULTS A total of 153 patients with a median follow-up of 13.3 months were included. Receiver operating characteristic curve analysis found that an NLR ≥2.4 was optimum (area under the curve, 0.762; 95% confidence interval [CI], 0.682-0.841, P < .001) for predicting poor 1-year OS (38.2% vs 83.6%, P < .001). Multivariable analysis demonstrated that NLR was significantly associated with OS, both as a continuous (P = .006) and a binary variable (NLR set at 2.4; P = .003). Multiple tumors (P = .003), macrovascular invasion (P = .024), extrahepatic spread (P = .002), and albumin-bilirubin score (P = .020) were also significant predictors of OS. Elevated NLR independently prognosticated poor progression-free survival (P = .016). Liver toxicity was seen in 22 evaluable patients (15.4%). Receiver operating characteristic curve analysis found NLR ≥4.0 was optimum at predicting liver toxicity (31.4% vs 10.2%, P = .005). A higher NLR (P = .049) and albumin-bilirubin score (P = .002) were independent risk factors for liver toxicity. CONCLUSIONS NLR is an objective and ubiquitous inflammatory marker that can predict OS and liver toxicity in HCC patients undergoing SABR. NLR could be a useful biomarker for patient risk stratification and therapeutic decision-making.
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- 2021
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15. Developing a novel DNA methylation risk score for survival and identification of prognostic gene mutations in endometrial cancer: a study based on TCGA data
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Po-Chien Shen, Ying-Fu Wang, Hao-Chih Chang, Wen-Yen Huang, Cheng-Hsiang Lo, Yu-Fu Su, Jen-Fu Yang, Chun-Shu Lin, and Yang-Hong Dai
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Gene Expression Regulation, Neoplastic ,Cancer Research ,Oncology ,Risk Factors ,Mutation ,Humans ,Female ,Radiology, Nuclear Medicine and imaging ,General Medicine ,DNA Methylation ,Prognosis ,Endometrial Neoplasms ,Transcription Factors - Abstract
Background Few studies have focused on DNA methylation in endometrial cancer. The aim of our study is identify its role in endometrial cancer prognosis. Methods A publicly available dataset was retrieved from The Cancer Genome Atlas. For validation of expression alteration due to methylation, RNA sequencing data were obtained from other independent cohorts. MethSurv was used to search for candidate CpG probes, which were then filtered by least absolute shrinkage and selection operator Cox regression and multivariate Cox regression analyses to identify final set of CpG probes for overall survival. A methylation-based risk model was developed and receiver operating characteristic analysis with area under curve was used for evaluation. Patients were divided into high- and low-risk groups using an optimal cut-off point. Comprehensive bioinformatic analyses were conducted to identify hub genes, key transcription factors, and enriched cancer-related pathways. Kaplan–Meier curve was used for survival analysis. Results A 5-CpG signature score was established. Its predictive value for 5-year overall survival was high, with area under curve of 0.828, 0.835 and 0.816 for the training, testing and entire cohorts. cg27487839 and cg12885678 had strong correlation with their gene expression, XKR6 and PTPRN2, and lower PTPRN2 expression was associated with poorer survival in both The Cancer Genome Atlas and the validation datasets. Low-risk group was associated with significantly better survival. Low-risk group harboured more mutations in hub genes and key transcription factors, and mutations in SP1 and MECP2 represented favourable outcome. Conclusion We developed a methylation-based prognostic stratification system for endometrial cancer. Low-risk group was associated with better survival and harboured more mutations in the key regulatory genes.
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- 2022
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16. Dynamic Changes in Neutrophil-to-Lymphocyte Ratio are Associated with Survival and Liver Toxicity Following Stereotactic Body Radiotherapy for Hepatocellular Carcinoma
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Cheng-Hsiang Lo, Wen-Yen Huang, Yang-Hong Dai, Chun-Shu Lin, Po-Chien Shen, Ying-Fu Wang, Wei-Chou Chang, Chih-Weim Hsiang, and Jen-Fu Yang
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medicine.medical_specialty ,Receiver operating characteristic ,Liver toxicity ,business.industry ,Stereotactic body radiation therapy ,hepatocellular carcinoma ,medicine.disease ,Gastroenterology ,platelet-to-lymphocyte ratio ,liver toxicity ,stereotactic body radiotherapy ,neutrophil-to-lymphocyte ratio ,Hepatocellular carcinoma ,Internal medicine ,medicine ,Peripheral blood cell ,Liver function ,Neutrophil to lymphocyte ratio ,business ,Stereotactic body radiotherapy ,Journal of Hepatocellular Carcinoma ,Original Research - Abstract
Chih-Weim Hsiang,1 Wen-Yen Huang,2,3 Jen-Fu Yang,2 Po-Chien Shen,2 Yang-Hong Dai,2 Ying-Fu Wang,2 Chun-Shu Lin,2 Wei-Chou Chang,1 Cheng-Hsiang Lo2 1Department of Radiology, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan; 2Department of Radiation Oncology, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan; 3Institute of Clinical Medicine, National Yang-Ming University, Taipei, TaiwanCorrespondence: Cheng-Hsiang LoDepartment of Radiation Oncology, Tri-Service General Hospital, National Defense Medical Center, No. 325, Sec 2, Cheng-Gong Road, Neihu, Taipei, 114, TaiwanTel +886-2-87927122Fax +886-2-66002357Email lsir183@yahoo.com.twPurpose: Immune response to antitumor therapies has been correlated with oncologic outcomes. This study aimed to determine whether dynamic changes in immune parameters could predict survival outcomes and assess their relationship with liver toxicity in hepatocellular carcinoma (HCC) patients treated with stereotactic body radiation therapy (SBRT).Methods: Data on pre- and post-SBRT (within 3 months) peripheral blood cell counts, neutrophil-to-lymphocyte ratio (NLR), and platelet-to-lymphocyte ratio (PLR) were retrospectively collected. Kinetic changes in these immune parameters and delta-NLR (dNLR) and delta-PLR (dPLR) in response to SBRT were evaluated. Overall survival (OS) and progression-free survival (PFS) were compared based on baseline NLR/PLR and dNLR/dPLR. Additionally, the association of these dynamic measures with liver toxicity was determined.Results: The study included 93 patients with a median 10.7-month follow-up. Significant increases in NLR (p< 0.001) and PLR (p=0.003) were observed after SBRT. In the multivariable analysis, elevated pre-SBRT NLR (p< 0.001) and dNLR (p=0.011) were predictive of worse OS. dNLR was not associated with PFS. Neither PLR nor dPLR was predictive of survival outcomes. Patients with ChildâTurcotteâPugh class B had higher dNLR and greater risk of liver toxicity than class A counterparts. Receiver operating characteristic curve analysis found that dNLR ⥠1.9 was an optimal cut-off value for determining liver toxicity risk (35.1% vs 7.5%, p=0.002).Conclusion: Baseline NLR and dNLR can complementarily predict OS in HCC patients treated with SBRT. Elevated dNLR is associated with worse OS and development of liver toxicity, possibly through their relationship with baseline liver function. Dynamic changes in NLR should be monitored in HCC care.Keywords: hepatocellular carcinoma, neutrophil-to-lymphocyte ratio, platelet-to-lymphocyte ratio, stereotactic body radiotherapy, liver toxicity
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- 2021
17. Fighter Pilots With Nasopharyngeal Carcinoma Successfully Returning to Flight After Radiotherapy: A Case Series
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Shih-Ming Chen, Kuen-Tze Lin, Yang-Hong Dai, Kwo-Tsao Chiang, and Shih-Yu Lee
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medicine.medical_specialty ,Hearing loss ,medicine.medical_treatment ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Hearing ,otorhinolaryngologic diseases ,medicine ,Tumor regression ,Humans ,Nasopharyngeal Carcinoma ,medicine.diagnostic_test ,business.industry ,Public Health, Environmental and Occupational Health ,Nasopharyngeal Neoplasms ,General Medicine ,medicine.disease ,Primary tumor ,Chemotherapy regimen ,Radiation therapy ,Pilots ,Nasopharyngeal carcinoma ,030220 oncology & carcinogenesis ,Audiometry, Pure-Tone ,Pure tone audiometry ,Radiology ,Audiometry ,medicine.symptom ,business - Abstract
For nasopharyngeal carcinoma (NPC), radiotherapy is the primary treatment. However, complications occur after radiation to the nasopharynx, which could potentially affect the flying safety. Four fighter pilots with NPC were reported. With early to locally advanced NPC, they received radiotherapy with or without concurrent chemotherapy. The prescribed radiation dose was 70 Gy to the primary tumor over the nasopharynx. Before treatment, all patients presented with various degrees of hearing loss on pure tone audiometry (main frequencies of 20–45 dB at 3–4.5 kHz for affected ears). After the full course of radiotherapy, tumor regression was noticed during months to years of follow-ups. The follow-up audiometry evaluation showed gradually recovered hearing function (average improvement of 5 dB at pretreatment frequencies) in all pilots. They then returned back to the flight line on annual waiver points. Here, we conclude that fighter pilots with NPC could successfully return to the flight line after radiotherapy. However, detailed physical examinations and confirmation of adaptation to flying condition are warranted.
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- 2019
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18. Stereotactic ablative radiotherapy versus conventionally fractionated radiotherapy in the treatment of hepatocellular carcinoma with portal vein invasion: a retrospective analysis
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Yang-Hong Dai, Meei-Shyuan Lee, Cheng-Hsiang Lo, Jen-Fu Yang, Hsing-Lung Chao, Po-Chien Shen, Chun-Shu Lin, and Wen-Yen Huang
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Adult ,Male ,lcsh:Medical physics. Medical radiology. Nuclear medicine ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Hepatocellular carcinoma ,Stereotactic body radiotherapy ,medicine.medical_treatment ,lcsh:R895-920 ,Urology ,SABR volatility model ,Radiosurgery ,Effective dose (radiation) ,lcsh:RC254-282 ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,Interquartile range ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Aged ,Retrospective Studies ,Aged, 80 and over ,Portal vein invasion ,business.industry ,Portal Vein ,Research ,Liver Neoplasms ,Radiotherapy Dosage ,Middle Aged ,medicine.disease ,Prognosis ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Portal vein thrombosis ,Radiation therapy ,Survival Rate ,Conventionally fractionated radiotherapy ,Oncology ,030220 oncology & carcinogenesis ,Propensity score matching ,030211 gastroenterology & hepatology ,Female ,Radiotherapy, Intensity-Modulated ,Stereotactic ablative radiotherapy ,business - Abstract
Background This study aimed to compare the clinical outcomes of stereotactic ablative radiotherapy (SABR) and conventionally fractionated radiotherapy (CFRT) in hepatocellular carcinoma (HCC) patients with portal vein invasion (PVI). Methods HCC patients with PVI treated with radiotherapy from 2007 to 2016 were analysed. CFRT was administered at a median dose of 51.5 Gy (interquartile range, 45–54 Gy) with 1.8–3 Gy per fraction. SABR was administered at a median dose of 45 Gy (interquartile range, 40–48 Gy) with 6–12.5 Gy per fraction. Treatment efficacy, toxicity, and associated predictors were assessed. Results Among the 104 evaluable patients (45 in the SABR group and 59 in the CFRT group), the overall response rate (ORR, complete and partial response) was significantly higher in the SABR group than the CFRT group (62.2% vs. 33.8%, p = 0.003). The 1-year overall survival (OS) rate (34.9% vs. 15.3%, p = 0.012) and in-field progression-free survival (IFPS) rate (69.6% vs. 32.2%, p = 0.007) were also significantly higher in the SABR vs. CFRT group. All 3 rates remained higher in the SABR group after propensity score matching. Multivariable analysis identified SABR and a biologically effective dose ≥65 Gy as favourable predicators of OS. There was no difference between treatment groups in the incidence of radiation-induced liver disease or increase of Child-Pugh score ≥ 2 within 3 months of radiotherapy. Conclusions SABR was superior to CFRT in terms of ORR, OS, and IFPS. We suggest that SABR should be the preferred technique for HCC patients with PVI.
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- 2019
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19. Comparison of Stereotactic Body Radiation Therapy and Transarterial Chemoembolization for Unresectable Medium-Sized Hepatocellular Carcinoma
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Yang-Hong Dai, Chun-Shu Lin, Wen-Yen Huang, Po-Chien Shen, Jen-Fu Yang, Cheng-Hsiang Lo, Meei-Shyuan Lee, Chao-Yueh Fan, and Wei-Chou Chang
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Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Stereotactic body radiation therapy ,Radiosurgery ,030218 nuclear medicine & medical imaging ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,medicine ,Carcinoma ,Humans ,Radiology, Nuclear Medicine and imaging ,Chemoembolization, Therapeutic ,Propensity Score ,Survival analysis ,Aged ,Retrospective Studies ,Aged, 80 and over ,Radiation ,business.industry ,Liver Neoplasms ,Retrospective cohort study ,Middle Aged ,medicine.disease ,Survival Analysis ,Tumor Burden ,Oncology ,Treatment modality ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Multivariate Analysis ,Propensity score matching ,Female ,Radiology ,Neoplasm Recurrence, Local ,business ,Follow-Up Studies - Abstract
This study compared the local control and overall survival (OS) between stereotactic body radiation therapy (SBRT) and transarterial chemoembolization (TACE) in medium-sized (3-8 cm) hepatocellular carcinoma (HCC).From January 2008 to October 2017, 188 patients with medium-sized HCC underwent either TACE (n = 142) or SBRT (n = 46). We adjusted for imbalances in treatment assignment using propensity score matching. Infield control (IFC) and OS were analyzed retrospectively.The median follow-up time was 17.1 months for all patients and 26.6 months for surviving patients. The 3-year IFC was 63.0% for the TACE group and 73.3% for the SBRT group. Multivariable analysis identified the independent predictors for IFC as treatment modality (SBRT vs TACE), sex (female vs male), and recurrence status (recurrence vs new diagnosis). The 3-year OS was 22.9% for the TACE group and 47.4% for the SBRT group. Multivariable analysis identified the independent predictors of OS as number of tumors, treatment modality (SBRT vs TACE), albumin-bilirubin grade, tumor volume, Eastern Cooperative Oncology Group status, and recurrence status. Propensity score matching analysis revealed that the SBRT group had better IFC (3-year IFC of 77.5% vs 55.6%; P = .007) and OS (3-year OS of 55.0% vs 13.0%; P.001) than the TACE group. For recurrent HCC, the SBRT group exhibited superior IFC (3-year IFC of 75% vs 57.5%; P = .022) and OS (3-year OS of 58.3% vs 5.9%; P.001) compared with the TACE group. However, there was no difference in IFC or OS between TACE and SBRT for patients with newly diagnosed HCC.SBRT has better IFC and OS rates than TACE in patients with medium-sized HCC, particularly for recurrent cases, which warrants prospective randomized controlled trials of TACE and SBRT.
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- 2019
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20. Gene-associated methylation status of ST14 as a predictor of survival and hormone receptor positivity in breast Cancer
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Wen-Yen Huang, Po-Chien Shen, Cheng-Hsiang Lo, Jen-Fu Yang, Hsing-Lung Chao, Chun-Shu Lin, Ying-Fu Wang, and Yang-Hong Dai
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Oncology ,Cancer Research ,medicine.medical_specialty ,Receptor, ErbB-2 ,Breast Neoplasms ,Biology ,ST14 ,Breast cancer ,Internal medicine ,Breast Cancer ,Genetics ,medicine ,Biomarkers, Tumor ,Humans ,RC254-282 ,Epigenomics ,DNA methylation ,Serine Endopeptidases ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,dNaM ,Epigenome ,Methylation ,Middle Aged ,medicine.disease ,Prognosis ,Survival Rate ,CpG site ,Receptors, Estrogen ,Female ,Receptors, Progesterone ,Matriptase ,Follow-Up Studies ,Research Article - Abstract
Background Genomic profiles of specific gene sets have been established to guide personalized treatment and prognosis for patients with breast cancer (BC). However, epigenomic information has not yet been applied in a clinical setting. ST14 encodes matriptase, a proteinase that is widely expressed in BC with reported prognostic value. Methods In this present study, we evaluated the effect of ST14 DNA methylation (DNAm) on overall survival (OS) of patients with BC as a representative example to promote the use of the epigenome in clinical decisions. We analyzed publicly available genomic and epigenomic data from 1361 BC patients. Methylation was characterized by the β-value from CpG probes based on sequencing with the Illumina Human 450 K platform. Results A high mean DNAm (β > 0.6779) across 34 CpG probes for ST14, as the gene-associated methylation (GAM) pattern, was associated with a longer OS after adjusting age, stage, histology and molecular features in Cox model (p value XBP1 expression level and higher proportion of hormone-positive BC (p value Conclusions Here we show the potential role of ST14 DNAm in BC prognosis and warrant further study.
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- 2021
21. Clinical Outcome and Pathologic Correlation of Stereotactic Body Radiation Therapy as a Bridge to Transplantation for Advanced Hepatocellular Carcinoma
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Ying-Fu Wang, Yang-Hong Dai, Chun-Shu Lin, Hao-Chih Chang, Po-Chien Shen, Jen-Fu Yang, Chih-Weim Hsiang, Cheng-Hsiang Lo, and Wen-Yen Huang
- Abstract
Background: Stereotactic body radiotherapy (SBRT) is an emerging modality for hepatocellular carcinoma (HCC). However, there is scant information about its safety and effectiveness in the neoadjuvant setting prior to liver transplantation (LT). We present the clinical outcome and pathologic assessment of SBRT followed by LT for patients with advanced HCC.Methods: This retrospective study included HCC patients treated with neoadjuvant SBRT prior to LT between 2009 and 2018. Radiographic response and adverse effects, including radiation-induced liver disease (RILD), were evaluated. Pathologic response was assessed by the percentage of tumor necrosis relative to the total tumor volume. Overall survival (OS) and recurrence-free survival (RFS) were calculated using the Kaplan–Meier method.Results: Fourteen patients underwent SBRT for a total of 25 HCC lesions, followed by LT. The median tumor size was 4.45 cm in diameter, and the median prescribed dose was 45 Gy in 5 fractions. SBRT provided significant AFP reduction, 100% infield control, and a 62.5% response rate. The maximum detected toxicity included grade 3 thrombocytopenia and two grade 3–4 hyperbilirubinemia. One patient developed non-classic RILD. Patients were bridged to LT with a median time of 8.4 months after SBRT, and 23.1% of them achieved a complete pathologic response. The median OS and RFS were 37.8 and 18.3 months from the time of LT, respectively.Conclusions: SBRT provides favorable tumor control and acceptable adverse effects for patients awaiting LT. Further prospective studies to test SBRT as a bridging therapy for LT are feasible.
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- 2020
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22. Stereotactic Body Radiotherapy for Hepatocellular Carcinoma: Current Evidence and the Feasibility of Radiomics-based Predictive Models
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Chen-Hsiang Lo, Yang-Hong Dai, Wen-Yen Huang, Shu-Ju Tu, Po-Chien Shen, Hsing-Lung Chao, Wei-Chou Chang, Chieh-Sheng Lu, Chun-Shu Lin, and Jen-Fu Yang
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medicine.medical_specialty ,Radiomics ,business.industry ,Hepatocellular carcinoma ,Medicine ,Radiology ,business ,medicine.disease ,Stereotactic body radiotherapy - Abstract
Background : Stereotactic body radiotherapy (SBRT) is an effective but less focused alternative for treatment of hepatocellular carcinoma (HCC). To date, a personalized model for predicting therapeutic response is lacking. This study aimed to review current knowledge and to propose a radiomics-based machine-learning (ML) strategy for local response (LR) prediction. Methods : We searched the literature for studies conducted between January 1993 and August 2019 that used > 100 patients. Additionally, 172 HCC patients in our hospital were retrospectively analyzed between January 2007 and December 2016. In the radiomic analysis, 41 treated tumors were contoured and 46 radiomic features were extracted. Results : The 1-year local control was 85.4% in our patient cohort, comparable with current results (87-99%). The Support Vector Machine (SVM) classifier, based on computed tomography (CT) scans in the A phase processed by equal probability (Ep) quantization with 8 gray levels, showed the highest mean F1 score (0.7995) for favorable LR within 1 year (W1R), at the end of follow-up (EndR), and condition of in-field failure-free (IFFF). The area under the curve (AUC) for this model was 92.1%, 96.3%, and 99.2% for W1R, EndR, and IFFF, respectively. Conclusions : SBRT has high 1-year local control and our study sets the basis for constructing predictive models for HCC patients receiving SBRT.
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- 2020
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23. Development and Validation of a Nomogram for Patients with Nonmetastatic BCLC Stage C Hepatocellular Carcinoma after Stereotactic Body Radiotherapy
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Cheng-Hsiang Lo, Jenny Y. Que, Po Chien Shen, Jason Chia-Hsien Cheng, Wen Yen Huang, Jen Fu Yang, Chiao Ling Tsai, Yang Hong Dai, Yu Ju Lin, and Mei Hsuan Lee
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Oncology ,medicine.medical_specialty ,lcsh:RC254-282 ,nomogram ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Original Paper ,Hepatology ,Receiver operating characteristic ,business.industry ,hepatocellular carcinoma ,Nomogram ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,BCLC Stage ,stereotactic body radiotherapy ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Cohort ,030211 gastroenterology & hepatology ,BCLC Stage C Hepatocellular Carcinoma ,Liver cancer ,business ,Stereotactic body radiotherapy - Abstract
Background: Stereotactic body radiotherapy (SBRT) is an emerging treatment modality for hepatocellular carcinoma (HCC) with promising outcome. However, appropriate survival prediction models are scarce. This study aimed to develop a simple and clinically useful prognostic nomogram for patients with nondistant metastatic Barcelona Clinic Liver Cancer (BCLC) stage C HCC undergoing SBRT. Methods: The data were based on a prospective multi-institutional registry enrolling 246 patients with nondistant metastatic BCLC stage C HCC treated with SBRT between January 1, 2008 and December 31, 2016. They were randomly divided into two subsets: 164 into the development cohort and 82 into the validation cohort. We identified and included prognostic factors for survival to derive a nomogram in the development cohort. The predictability of the nomogram was evaluated in the validation cohort. The area under the receiver operating characteristic curve (AUROC) and the calibration plot were used to evaluate the performance of the nomogram. Results: The median survival was 13.5 months, with 1- and 2-year overall survival (OS) rates of 55.0 and 32.9%, respectively. Number of tumors, largest tumor size, macrovascular invasion, Child-Turcotte-Pugh class, and biologically effective dose were significantly associated with OS (p < 0.05). These predictors were included to develop a nomogram with an AUROC of 0.77 (0.73–0.87). The prediction model was well calibrated in the validation cohort. The OS for patients who were divided by their risk scores differed significantly (p < 0.001). Conclusions: The nomogram we generated had discriminatory and satisfactory predictability for OS among nonmetastatic BCLC stage C HCC patients treated with SBRT. It demands further validations with cross-country data to confirm its worldwide usefulness.
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- 2020
24. Connection Between Tumor Radiosensitivity and Response to Immunotherapy in 11 Major Epithelial Cancer Types
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Yang-Hong Dai, Jen-Fu Yang, Wen-Yen Huang, Cheng-Hsiang Lo, Po-Chien Shen, Ying-Fu Wang, Hsing-Lung Chao, and Chun-Shu Lin
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Oncology ,medicine.medical_specialty ,DNA repair ,business.industry ,medicine.medical_treatment ,Cancer ,Immunotherapy ,medicine.disease ,Blockade ,Radiation therapy ,Immune system ,Internal medicine ,medicine ,Radiosensitivity ,business ,Survival analysis - Abstract
Background: Radiotherapy has gained increasing attention as an effective cytotoxic agent to improve therapeutic response to immunotherapy. However, synergic effect is seldom seen clinically and reliable biomarkers for optimal patient selection remains to be identified. Radiosensitivity index (RSI) is a well-known measure of tumor’s response to radiotherapy, which is derived from genomic data and system biology. Its association with the immune landscape in cancer is unclear. Methods: Genomic data from Merged Microarray-Acquired dataset (MMD) were established and the Cancer Genome Atlas (TCGA) were obtained. Based on rank-based regression model including 10 genes, RSI was calculated. A total of 12,832 primary tumors across 11 major cancer types were analyzed. RSI was stratified into RSI-Low and RSI-High by a cutpoint of 0.46. Gene set variance analysis was applied to measure the genomic pathway activity (18 genes for T-cell inflamed activity). Kaplan-Meier analysis was performed for survival analysis. Findings: We found that RSI was significantly associated with homologous DNA repair, cancer stemness and various cancer-specific molecular features. Tumors with low RSI were associated with significantly higher portion of M1 macrophage, relative to M2 macrophage, and higher IFNG expression. Additionally, dominant interferon-γ (IFN-γ) response was characterized by low RSI and potentially predicted better response to programmed cell death 1 (PD-1) blockade. Interpretation: RSI is strongly associated with immune response and efficacy to PD-1 blockade. IFN-γ dominant status could be estimated by RSI, providing an alternative selection strategy to identify suitable patients for combined radiotherapy and immunotherapy. Funding Statement: This study was supported by study project of Tri-Service General Hospital (TSGH-D109063). Declaration of Interests: The authors declare that they have no competing interests.
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- 2020
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25. Diagnostic utility of procalcitonin in scrub typhus
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Shiue-Wei Lai, Tsung-Ying Yu, Guan-Liang Chen, Wei-Ting Liu, Yang-Hong Dai, and Gen-Min Lin
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medicine.medical_specialty ,business.industry ,Medicine ,General Medicine ,Scrub typhus ,business ,Intensive care medicine ,medicine.disease ,Procalcitonin - Published
- 2022
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26. Using computed tomography-based radiomics to predict outcomes for hepatocellular carcinoma patients receiving stereotactic body radiotherapy
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Yang-Hong Dai, Wei-Chou Chang, Cheng-Hsiang Lo, Wen-Yen Huang, Po-Chien Shen, Jing-Min Hwang, Hao-Chih Chang, Chun-Shu Lin, Jen-Fu Yang, Shu-Ju Tu, and Hsing-Lung Chao
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medicine.medical_specialty ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,Oncology (nursing) ,business.industry ,Computed tomography ,medicine.disease ,Oncology ,Radiomics ,Hepatocellular carcinoma ,Medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,business ,Stereotactic body radiotherapy - Published
- 2021
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27. The intracellular seven amino acid motif EEGEVFL is required for matriptase vesicle sorting and translocation to the basolateral plasma membrane
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Jehng-Kang Wang, Chen-Yong Lin, Robert B. Barndt, Michael D. Johnson, Bailing Jia, Chun-Che Tseng, Yu Hsin Chen, Po-Wen A. Du, Hung-Jen Tang, and Yang-Hong Dai
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0301 basic medicine ,Cytoplasm ,Amino Acid Motifs ,Cell Membranes ,Video microscopy ,Biochemistry ,Madin Darby Canine Kidney Cells ,Database and Informatics Methods ,0302 clinical medicine ,Epithelial polarity ,Staining ,Enzyme Precursors ,Multidisciplinary ,Membrane Glycoproteins ,biology ,Chemistry ,Serine Endopeptidases ,Cell Polarity ,Cell Staining ,Basolateral plasma membrane ,Cell biology ,Protein Transport ,Transcytosis ,Medicine ,Cellular Structures and Organelles ,Sequence Analysis ,Research Article ,Bioinformatics ,Science ,Green Fluorescent Proteins ,Proteinase Inhibitory Proteins, Secretory ,Research and Analysis Methods ,Cell Membrane Structures ,Cell Line ,03 medical and health sciences ,Dogs ,Protein Domains ,Sequence Motif Analysis ,Zymogens ,Animals ,Humans ,Matriptase ,Secretion ,Vesicles ,Cell Membrane ,Biology and Life Sciences ,Membrane Proteins ,Proteins ,Cell Biology ,Intracellular Membranes ,Fusion protein ,030104 developmental biology ,HEK293 Cells ,Membrane protein ,Specimen Preparation and Treatment ,biology.protein ,Enzymology ,030217 neurology & neurosurgery - Abstract
Matriptase plays important roles in epithelial integrity and function, which depend on its sorting to the basolateral surface of cells, where matriptase zymogen is converted to an active enzyme in order to act on its substrates. After activation, matriptase undergoes HAI-1-mediated inhibition, internalization, transcytosis, and secretion from the apical surface into the lumen. Matriptase is a mosaic protein with several distinct protein domains and motifs, which are a reflection of matriptase's complex cellular itinerary, life cycle, and the tight control of its enzymatic activity. While the molecular determinants for various matriptase regulatory events have been identified, the motif(s) required for translocation of human matriptase to the basolateral plasma membrane is unknown. The motif previously identified in rat matriptase is not conserved between the rodent and the primate. We, here, revisit the question for human matriptase through the use of a fusion protein containing a green fluorescent protein linked to the matriptase N-terminal fragment ending at Gly-149. A conserved seven amino acid motif EEGEVFL, which is similar to the monoleucine C-terminal to an acidic cluster motif involved in the basolateral targeting for some growth factors, has been shown to be required for matriptase translocation to the basolateral plasma membrane of polarized MDCK cells. Furthermore, time-lapse video microscopy showed that the motif appears to be required for entry into the correct transport vesicles, by which matriptase can undergo rapid trafficking and translocate to the plasma membrane. Our study reveals that the EEGEVFL motif is necessary, but may not be sufficient, for matriptase basolateral membrane targeting and serves as the basis for further research on its pathophysiological roles.
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- 2019
28. Esophageal perforation during neoadjuvant chemoradiotherapy for esophageal cancer following transcatheter arterial embolization: a case report
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Pin-Ju Chen, Yang-Hong Dai, Tsung-Yen Wang, Kuo-Wei Lu, and Chih-Cheng Tsao
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medicine.medical_specialty ,Radiological and Ultrasound Technology ,Oncology (nursing) ,business.industry ,Arterial Embolization ,Perforation (oil well) ,Esophageal cancer ,medicine.disease ,Oncology ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,business ,Neoadjuvant chemoradiotherapy - Published
- 2021
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29. Evaluation and prediction of therapeutic response for patients with hepatocellular carcinoma receiving stereotactic body radiotherapy using serial computed tomography scans and radiomics
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Jen-Fu Yang, Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Wen-Yen Huang, Wei-Chou Chang, Chieh-Sheng Lu, Chun-Shu Lin, Cheng-Hsiang Lo, and Hsing-Lung Chao
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medicine.medical_specialty ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,Oncology (nursing) ,business.industry ,Computed tomography ,medicine.disease ,Oncology ,Radiomics ,Hepatocellular carcinoma ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,business ,Stereotactic body radiotherapy - Published
- 2020
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30. Review of current perspectives on low-energy X-ray intraoperative radiotherapy in early stage breast cancer
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Hsing-Lung Chao, Ming-Yueh Liu, Kun-San Chao, Chih-Cheng Tsao, Yu-Jen Chen, Po-Chien Shen, Chen-Hsiang Lo, Chun-Shu Lin, Yang-Hong Dai, Wen-Yen Huang, Chang-Ming Chen, Chao-Yueh Fan, Yu-Fu Su, Yen-Fu Yang, and Kuen-Tze Lin
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medicine.medical_specialty ,Radiological and Ultrasound Technology ,Oncology (nursing) ,business.industry ,medicine.medical_treatment ,Therapeutic effect ,Partial Breast Irradiation ,medicine.disease ,law.invention ,Low energy ,Breast cancer ,Oncology ,Randomized controlled trial ,law ,Medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,Stage (cooking) ,business ,Intraoperative radiation therapy ,Intraoperative radiotherapy - Abstract
In early stage breast cancer, intraoperative radiation therapy (IORT) is a form of accelerated partial breast irradiation (APBI) that provides attractive therapeutic effects while shortening the overall treatment time and sparing the normal tissue radiation exposure. This technique has been used in Taiwan for several years in selected patients with breast cancer. However, some randomized trials pointed out that IORT is associated with higher rate of recurrence, therefore impeding its wider use as one of the standard managements in breast cancer. Also, despite its theoretical benefits for smaller tumor after surgery, the problem of recurrence warrants the necessity of strict and careful patient selection. The purpose of this article is to comprehensively review the updated consensus and current opinions on the use of IORT for early stage breast cancer.
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- 2019
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31. Flexible nanopillars to regulate cell adhesion and movement
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Fan Ching Chien, Yang Hong Dai, Peilin Chen, and Chiung Wen Kuo
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0301 basic medicine ,Materials science ,Flexibility (anatomy) ,Polymers ,Bioengineering ,Nanotechnology ,CHO Cells ,Focal adhesion ,03 medical and health sciences ,Cricetulus ,Cell Movement ,Cricetinae ,medicine ,Cell Adhesion ,Animals ,General Materials Science ,Electrical and Electronic Engineering ,Cell adhesion ,Actin ,Nanopillar ,Focal Adhesions ,biology ,business.industry ,Mechanical Engineering ,Cell migration ,General Chemistry ,Vinculin ,030104 developmental biology ,medicine.anatomical_structure ,Mechanics of Materials ,biology.protein ,Optoelectronics ,business - Abstract
Flexible polymer nanopillar substrates were used to systematically demonstrate cell alignment and migration guided by the directional formation of focal adhesions. The polymer nanopillar substrates were constructed to various height specifications to provide an extensive variation of flexibility; a rectangular arrangement created spatial confinement between adjacent nanopillars, providing less spacing in the horizontal and vertical directions. Three polymer nanopillar substrates with the diameter of 400 nm and the heights of 400, 800, and 1200 nm were fabricated. Super-resolution localization imaging and protein pair–distance analysis of vinculin proteins revealed that Chinese hamster ovary (CHO) cells formed mature focal adhesions on 1200 nm high nanopillar substrates by bending adjacent nanopillars to link dot-like adhesions. The spacing confinement of the adjacent nanopillars enhanced the orthogonal directionality of the formation tendency of the mature focal adhesions. The directional formation of the mature focal adhesions also facilitated the organization of actin filaments in the horizontal and vertical directions. Moreover, 78% of the CHO cells were aligned in these two directions, in conformity with the flexibility and nanotopographical cues of the nanopillars. Biased cell migration was observed on the 1200 nm high nanopillar substrates.
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- 2016
32. Hepatobiliary cystadenocarcinoma without mesenchymal stroma in a female patient: a case report
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Yang-Hong Dai, Chung-Bao Hsieh, Yee Hui Yeo, Yu-Lueng Shih, and Yao-Feng Li
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medicine.medical_specialty ,Pathology ,Hepatobiliary cystadenocarcinoma ,Cystadenocarcinoma ,Intrahepatic bile ducts ,Case Report ,Bile Duct Neoplasm ,Gastroenterology ,Cholestasis ,Internal medicine ,medicine ,Humans ,Biliary tumors ,Hepatolithiasis ,Aged ,Ultrasonography ,medicine.diagnostic_test ,business.industry ,General Medicine ,Hepatology ,medicine.disease ,stomatognathic diseases ,Bile Ducts, Intrahepatic ,Bile Duct Neoplasms ,Abdominal ultrasonography ,Cholecystitis ,Female ,Tomography, X-Ray Computed ,business - Abstract
Background Hepatobiliary cystadenocarcinoma is a rare epithelial malignant neoplasm of the liver or extrahepatic bile ducts. Early diagnosis of hepatobiliary cystadenocarcinoma is difficult because of its asymptomatic features and rarity. Moreover, the molecular pathogenesis of hepatobiliary cystadenocarcinoma remains unclear. Herein, we described a case of hepatobiliary cystadenocarcinoma in female with chronic hepatitis B and repeated hepatolithiasis. Case presentation A 65-year-old woman with medical history of latent hepatitis B virus infection, repeated choledocholisthiasis, and cholecystitis was admitted due to a heterogeneous cystic mass (5.6 cm × 4 cm) shown on abdominal ultrasonography during regular physical checkup. The patient complained about irregular bowel movements with intermittent diarrhea for two months before presentation. Computed tomography (CT) disclosed a multiloculated cystic lesion in the left hepatic lobe with the presence of intraductal stones and dilatation of intrahepatic ducts. Histological results obtained from left lobectomy specimens showed hepatobiliary cystadenocarcinoma without accompanied mesenchymal stroma. Conclusion Notably, hepatobiliary cystadenocarcinoma without mesenchymal stroma seldom occurs in women and is usually associated with poor prognosis. We present the rare findings in this patient and suggest that chronic inflammatory insults in the intrahepatic bile ducts might shed light on the cystadenocarcinogenesis.
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- 2014
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33. Cerebellar and oculomotor dysfunction induced by rapid infusion of pethidine
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Kuang-Ling Ou, Po-Wei Chu, and Yang-Hong Dai
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Adult ,Cerebellar Ataxia ,Meperidine ,Uterine Cervical Neoplasms ,Hysterectomy ,Article ,Ocular Motility Disorders ,Norpethidine ,Dysmetria ,medicine ,Humans ,Infusions, Intravenous ,Pain, Postoperative ,Cerebellar ataxia ,business.industry ,Dysarthria ,Nausea ,General Medicine ,medicine.disease ,Pethidine ,Analgesics, Opioid ,Opioid ,Anesthesia ,Vomiting ,Carcinoma, Squamous Cell ,Female ,Liver function ,medicine.symptom ,business ,medicine.drug - Abstract
Pethidine is an opioid that gains its popularity for the effective pain control through acting on the opioid-receptors. However, rapid pain relief sometimes brings about unfavourable side effects that largely limit its clinical utility. Common side effects include nausea, vomiting and hypotension. In patients with impaired renal and liver function, and those who need long-term pain control, pethidine may cause excitatory central nervous system (CNS) effects through its neurotoxic metabolite, norpethidine, resulting in irritability and seizure attack. On the contrary, though not clinically apparent, pethidine potentially causes inhibitory impacts on the CNS and impairs normal cerebellar and oculomotor function in the short term. In this case report, we highlight opioid's inhibitory side effects on the cerebellar structure that causes dysmetria, dysarthria, reduced smooth pursuit gain and decreased saccadic velocity.
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- 2014
34. An unusual cause of cerebellar and oculomotor dysfunction by rapid infusion of meperidine
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Po-Wei Chu, Che-Ming Chiang, Yang-Hong Dai, and Kuang-Ling Ou
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Anesthesiology and Pain Medicine ,business.industry ,Anesthesia ,Medicine ,business ,Rapid infusion - Published
- 2014
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35. Dual-color dynamic tracking of GM-CSF receptors/JAK2 kinases signaling activation using temporal focusing multiphoton fluorescence excitation and astigmatic imaging
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Fan-Ching Chien, Chun-Shan Liu, Chi-Hsiang Lien, Yang-Hong Dai, and Jeffrey Jong-Young Yen
- Subjects
Microscope ,Optical sectioning ,Optical force ,Sensitivity and Specificity ,law.invention ,Optics ,law ,Microscopy ,Humans ,Cylindrical lens ,Lighting ,Lenses ,Physics ,business.industry ,Reproducibility of Results ,Equipment Design ,Janus Kinase 2 ,Image Enhancement ,Photobleaching ,Atomic and Molecular Physics, and Optics ,Molecular Imaging ,Enzyme Activation ,Equipment Failure Analysis ,Microscopy, Fluorescence, Multiphoton ,Optical tweezers ,Receptors, Granulocyte-Macrophage Colony-Stimulating Factor ,Temporal resolution ,business ,HeLa Cells ,Signal Transduction - Abstract
The dual-color dynamic particle tracking approach that uses temporal focusing multiphoton fluorescence excitation and two-channel astigmatic imaging is utilized to track molecular trajectories in three dimensions to explore molecular interactions. Images of two fluorophores were obtained to extract their positions by optical sectioning excitation using a fast temporal focusing multiphoton excitation microscope (TFMPEM) and by the simultaneous collection of data in two channels. The presented pair of cylindrical lenses, which was used to adjust the astigmatism effect with the minimum shifting of the imaging plane, was more feasible and flexible than single cylindrical lens for aligning two separate detection channels in astigmatic imaging. The lateral and axial positioning resolutions were observed to be approximately 9-13 nm and 23-30 nm respectively, for the two fluorescence channels. The dynamic movement and binding behavior of clusters of GM-CSF receptors and JAK2 kinases in HeLa cells in the presence of GM-CSF ligands were observed. Therefore, the proposed dual-color tracking strategy is useful for the dynamic study of molecular interactions in living specimens with a fast frame rate, less photobleaching, better penetration depth, and minimum optical trapping force.
- Published
- 2015
- Full Text
- View/download PDF
36. Remove as (III) from Aqueous Solution by Powder Mg(OH)2.
- Author
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Jin-hui, Yang, Yang-hong, Dai, Fu-quan, Peng, Zheng-wei, Xiong, and Hua, Xu
- Subjects
AQUEOUS solutions ,MAGNESIUM compounds ,ARSENIC removal (Water purification) ,ADSORPTION (Chemistry) ,ATMOSPHERIC temperature ,EQUATIONS - Abstract
Abstract: Power Mg(OH)
2 was used to remove As(III) from arsenic-bearing wastewater. Results showed that Mg(OH)2 had strong adsorptive property on As(III) ions with its adsorption capacity of 4.04mg/L; Mg(OH)2 adsorption on As(III) fit well with Langmuir Isotherm equation; As(III) removal rate increased with vibration time and input quantity of adsorbents while decreased as pH increased and effects were obvious; temperature had little affection on arsenic adsorption; As(III) removal rate can exceeded 99% when reaching equilibrium under condition As(III) concentration of 20mg/L, Mg(OH)2 input quantity of 2g/L and pH of 3; Mg(OH)2 adsorption was fast and can reach equilibrium in 60min. [Copyright &y& Elsevier]- Published
- 2011
- Full Text
- View/download PDF
37. A massive retroperitoneal neuroblastoma with stenosis of the inferior vena cava in a 5-month-old boy.
- Author
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Jui-Ting Li, Yang-Hong Dai, and Shih-Ming Kuo
- Subjects
NEUROBLASTOMA ,HEALTH outcome assessment ,VENA cava inferior ,RETROPERITONEUM ,STENOSIS ,TREATMENT effectiveness ,TUMORS - Published
- 2014
- Full Text
- View/download PDF
38. Cerebellar and oculomotor dysfunction induced by rapid infusion of pethidine.
- Author
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Yang-Hong Dai, Kuang-Ling Ou, and Po-Wei Chu
- Subjects
INTRAVENOUS therapy ,ANALGESICS ,CENTRAL nervous system ,DRUG side effects ,ISONIPECAINE ,NARCOTICS ,SURGICAL complications - Published
- 2014
- Full Text
- View/download PDF
39. An unusual cause of cerebellar and oculomotor dysfunction by rapid infusion of meperidine.
- Author
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Yang-Hong Dai, Kuang-Ling Ou, Che-Ming Chiang, and Po-Wei Chu
- Subjects
- *
CEREBELLUM degeneration , *EYE movements , *EYE diseases , *DRUG infusion pumps , *OPIOIDS , *MUSCARINIC antagonists , *RESPIRATORY diseases - Published
- 2014
- Full Text
- View/download PDF
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