37 results on '"Yang, Jing‐Quan"'
Search Results
2. Supplementary Material for Whole-genome resequencing of worldwide wild and domestic sheep elucidates genetic diversity, introgression and agronomically important loci
- Author
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Li, Meng-Hua [menghua.li@cau.edu.cn], Lv, Feng-Hua, Cao, Yin-Hong, Liu, Guang-Jian, Luo, Ling-Yun, Lu, Ran, Liu, Ming-Jun, Li, Wen-Rong, Zhou, Ping, Wang, Xin-Hua, Shen, Min, Gao, Lei, Yang, Jing-Quan, Yang, Hua, Yang, Yong-Lin, Liu, Chang-Bin, Wan, Peng-Cheng, Zhang, Yun-Sheng, Pi, Wen-Hui, Ren, Yan-Ling, Shen, Zhi-Qiang, Wang, Feng, Wang, Yu-Tao, Li, Jin-Quan, Salehian-Dehkordi, Hosein, Hehua, Eer, Liu, Yong-Gang, Chen, Jian-Fei, Wang, Jian-Kui, Deng, Xue-Mei, Esmailizadeh, Ali, Dehghani-Qanatqestani, Mostafa, Charati, Hadi, Nosrati, Maryam, Štěpánek, Ondřej, Rushdi, Hossam E., Olsaker, Ingrid, Curik, Ino, Gorkhali, Neena A., Paiva, S. R., Caetano, Alexander R., Ciani, Elena, Amills, Marcel, Weimann, Christina, Erhardt, Georg, Amane, Agraw, Mwacharo, Joram M., Han, Jian-Lin, Hanotte, Olivier, Periasamy, Kathiravan, Johansson, Anna M., Hallsson, Jón H., Kantanen, Juha, Coltman, David W., Bruford, Michael W., Lenstra, Johannes A., Li, Meng-Hua, Li, Meng-Hua [menghua.li@cau.edu.cn], Lv, Feng-Hua, Cao, Yin-Hong, Liu, Guang-Jian, Luo, Ling-Yun, Lu, Ran, Liu, Ming-Jun, Li, Wen-Rong, Zhou, Ping, Wang, Xin-Hua, Shen, Min, Gao, Lei, Yang, Jing-Quan, Yang, Hua, Yang, Yong-Lin, Liu, Chang-Bin, Wan, Peng-Cheng, Zhang, Yun-Sheng, Pi, Wen-Hui, Ren, Yan-Ling, Shen, Zhi-Qiang, Wang, Feng, Wang, Yu-Tao, Li, Jin-Quan, Salehian-Dehkordi, Hosein, Hehua, Eer, Liu, Yong-Gang, Chen, Jian-Fei, Wang, Jian-Kui, Deng, Xue-Mei, Esmailizadeh, Ali, Dehghani-Qanatqestani, Mostafa, Charati, Hadi, Nosrati, Maryam, Štěpánek, Ondřej, Rushdi, Hossam E., Olsaker, Ingrid, Curik, Ino, Gorkhali, Neena A., Paiva, S. R., Caetano, Alexander R., Ciani, Elena, Amills, Marcel, Weimann, Christina, Erhardt, Georg, Amane, Agraw, Mwacharo, Joram M., Han, Jian-Lin, Hanotte, Olivier, Periasamy, Kathiravan, Johansson, Anna M., Hallsson, Jón H., Kantanen, Juha, Coltman, David W., Bruford, Michael W., Lenstra, Johannes A., and Li, Meng-Hua
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- 2022
3. Whole-genome resequencing of worldwide wild and domestic sheep elucidates genetic diversity, introgression, and agronomically important loci
- Author
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National Natural Science Foundation of China, National Key Research and Development Program (China), Chinese Academy of Sciences, Lv, Feng-Hua, Cao, Yin-Hong, Liu, Guang-Jian, Luo, Ling-Yun, Lu, Ran, Liu, Ming-Jun, Li, Wen-Rong, Zhou, Ping, Wang, Xin-Hua, Shen, Min, Gao, Lei, Yang, Jing-Quan, Yang, Hua, Yang, Yong-Lin, Liu, Chang-Bin, Wan, Peng-Cheng, Zhang, Yun-Sheng, Pi, Wen-Hui, Ren, Yan-Ling, Shen, Zhi-Qiang, Wang, Feng, Wang, Yu-Tao, Li, Jin-Quan, Salehian-Dehkordi, Hosein, Hehua, Eer, Liu, Yong-Gang, Chen, Jian-Fei, Wang, Jian-Kui, Deng, Xue-Mei, Esmailizadeh, Ali, Dehghani-Qanatqestani, Mostafa, Charati, Hadi, Nosrati, Maryam, Štěpánek, Ondřej, Rushdi, Hossam E., Olsaker, Ingrid, Curik, Ino, Gorkhali, Neena A., Paiva, S. R., Caetano, Alexander R., Ciani, Elena, Amills, Marcel, Weimann, Christina, Erhardt, Georg, Amane, Agraw, Mwacharo, Joram M., Han, Jian-Lin, Hanotte, Olivier, Periasamy, Kathiravan, Johansson, Anna M., Hallsson, Jón H., Kantanen, Juha, Coltman, David W., Bruford, Michael W., Lenstra, Johannes A., Li, Meng-Hua, National Natural Science Foundation of China, National Key Research and Development Program (China), Chinese Academy of Sciences, Lv, Feng-Hua, Cao, Yin-Hong, Liu, Guang-Jian, Luo, Ling-Yun, Lu, Ran, Liu, Ming-Jun, Li, Wen-Rong, Zhou, Ping, Wang, Xin-Hua, Shen, Min, Gao, Lei, Yang, Jing-Quan, Yang, Hua, Yang, Yong-Lin, Liu, Chang-Bin, Wan, Peng-Cheng, Zhang, Yun-Sheng, Pi, Wen-Hui, Ren, Yan-Ling, Shen, Zhi-Qiang, Wang, Feng, Wang, Yu-Tao, Li, Jin-Quan, Salehian-Dehkordi, Hosein, Hehua, Eer, Liu, Yong-Gang, Chen, Jian-Fei, Wang, Jian-Kui, Deng, Xue-Mei, Esmailizadeh, Ali, Dehghani-Qanatqestani, Mostafa, Charati, Hadi, Nosrati, Maryam, Štěpánek, Ondřej, Rushdi, Hossam E., Olsaker, Ingrid, Curik, Ino, Gorkhali, Neena A., Paiva, S. R., Caetano, Alexander R., Ciani, Elena, Amills, Marcel, Weimann, Christina, Erhardt, Georg, Amane, Agraw, Mwacharo, Joram M., Han, Jian-Lin, Hanotte, Olivier, Periasamy, Kathiravan, Johansson, Anna M., Hallsson, Jón H., Kantanen, Juha, Coltman, David W., Bruford, Michael W., Lenstra, Johannes A., and Li, Meng-Hua
- Abstract
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the backbone of molecular breeding, but their genome landscapes remain understudied. Here, we present a comprehensive genome resource for wild ovine species, landraces and improved breeds of domestic sheep, comprising high-coverage (∼16.10×) whole genomes of 810 samples from 7 wild species and 158 diverse domestic populations. We detected, in total, ∼121.2 million single nucleotide polymorphisms, ∼61 million of which are novel. Some display significant (P < 0.001) differences in frequency between wild and domestic species, or are private to continent-wide or individual sheep populations. Retained or introgressed wild gene variants in domestic populations have contributed to local adaptation, such as the variation in the HBB associated with plateau adaptation. We identified novel and previously reported targets of selection on morphological and agronomic traits such as stature, horn, tail configuration, and wool fineness. We explored the genetic basis of wool fineness and unveiled a novel mutation (chr25: T7,068,586C) in the 3′-UTR of IRF2BP2 as plausible causal variant for fleece fiber diameter. We reconstructed prehistorical migrations from the Near Eastern domestication center to South-and-Southeast Asia and found two main waves of migrations across the Eurasian Steppe and the Iranian Plateau in the Early and Late Bronze Ages. Our findings refine our understanding of genome variation as shaped by continental migrations, introgression, adaptation, and selection of sheep.
- Published
- 2022
4. Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci
- Author
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Lv, Feng-Hua, Cao, Yin-Hong, Liu, Guang-Jian, Luo, Ling-Yun, Lu, Ran, Liu, Ming-Jun, Li, Wen-Rong, Zhou, Ping, Wang, Xin-Hua, Shen, Min, Gao, Lei, Yang, Jing-Quan, Yang, Hua, Yang, Yong-Lin, Liu, Chang-Bin, Wan, Peng-Cheng, Zhang, Yun-Sheng, Pi, Wen-Hui, Ren, Yan-Ling, Shen, Zhi-Qiang, Wang, Feng, Li, Jin-Quan, Salehian-Dehkordi, Hosein, Hehua, Eer, Liu, Yong-Gang, Chen, Jian-Fei, Wang, Jian-Kui, Deng, Xue-Mei, Esmailizadeh, Ali, Dehghani-Qanatqestani, Mostafa, Charati, Hadi, Nosrati, Maryam, Stepanek, Ondrej, Rushdi, Hossam E., Olsaker, Ingrid, Curik, Ino, Gorkhali, Neena A., Paiva, Samuel R., Caetano, Alexandre R., Ciani, Elena, Amills, Marcel, Weimann, Christina, Erhardt, Georg, Amane, Agraw, Mwacharo, Joram M., Han, Jian-Lin, Hanotte, Olivier, Periasamy, Kathiravan, Johansson, Anna Maria, Hallsson, Jon H., Kantanen, Juha, Coltman, David W., Bruford, Michael W., Lenstra, Johannes A., and Li, Meng-Hua
- Subjects
Evolutionary Biology - Abstract
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the backbone of molecular breeding, but their genome landscapes remain understudied. Here, we present a comprehensive genome resource for wild ovine species, landraces and improved breeds of domestic sheep, comprising high-coverage (similar to 16.10x) whole genomes of 810 samples from 7 wild species and 158 diverse domestic populations. We detected, in total, similar to 121.2 million single nucleotide polymorphisms, similar to 61 million of which are novel. Some display significant (P < 0.001) differences in frequency between wild and domestic species, or are private to continent-wide or individual sheep populations. Retained or introgressed wild gene variants in domestic populations have contributed to local adaptation, such as the variation in the HBB associated with plateau adaptation. We identified novel and previously reported targets of selection on morphological and agronomic traits such as stature, horn, tail configuration, and wool fineness. We explored the genetic basis of wool fineness and unveiled a novel mutation (chr25: T7,068,586C) in the 3 '-UTR of IRF2BP2 as plausible causal variant for fleece fiber diameter. We reconstructed prehistorical migrations from the Near Eastern domestication center to South-and-Southeast Asia and found two main waves of migrations across the Eurasian Steppe and the Iranian Plateau in the Early and Late Bronze Ages. Our findings refine our understanding of genome variation as shaped by continental migrations, introgression, adaptation, and selection of sheep.
- Published
- 2022
5. Peroxisome proliferator-activated receptor-γ (PPAR-γ) agonist inhibits transforming growth factor-beta1 and matrix production in human dermal fibroblasts
- Author
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Zhang, Guo-You, Cheng, Tao, Zheng, Ming-Hua, Yi, Cheng-Gang, Pan, Hua, Li, Zhi-Jie, Chen, Xing-Long, Yu, Qing, Jiang, Liang-Fu, Zhou, Fei-Ya, Li, Xiao-Yang, Yang, Jing-Quan, Chu, Ting-Gang, and Gao, Wei-Yang
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- 2010
- Full Text
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6. Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci
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Lv, Feng-Hua, primary, Cao, Yin-Hong, additional, Liu, Guang-Jian, additional, Luo, Ling-Yun, additional, Lu, Ran, additional, Liu, Ming-Jun, additional, Li, Wen-Rong, additional, Zhou, Ping, additional, Wang, Xin-Hua, additional, Shen, Min, additional, Gao, Lei, additional, Yang, Jing-Quan, additional, Yang, Hua, additional, Yang, Yong-Lin, additional, Liu, Chang-Bin, additional, Wan, Peng-Cheng, additional, Zhang, Yun-Sheng, additional, Pi, Wen-Hui, additional, Ren, Yan-Ling, additional, Shen, Zhi-Qiang, additional, Wang, Feng, additional, Wang, Yu-Tao, additional, Li, Jin-Quan, additional, Salehian-Dehkordi, Hosein, additional, Hehua, Eer, additional, Liu, Yong-Gang, additional, Chen, Jian-Fei, additional, Wang, Jian-Kui, additional, Deng, Xue-Mei, additional, Esmailizadeh, Ali, additional, Dehghani-Qanatqestani, Mostafa, additional, Charati, Hadi, additional, Nosrati, Maryam, additional, Štěpánek, Ondřej, additional, Rushdi, Hossam E, additional, Olsaker, Ingrid, additional, Curik, Ino, additional, Gorkhali, Neena A, additional, Paiva, Samuel R, additional, Caetano, Alexandre R, additional, Ciani, Elena, additional, Amills, Marcel, additional, Weimann, Christina, additional, Erhardt, Georg, additional, Amane, Agraw, additional, Mwacharo, Joram M, additional, Han, Jian-Lin, additional, Hanotte, Olivier, additional, Periasamy, Kathiravan, additional, Johansson, Anna M, additional, Hallsson, Jón H, additional, Kantanen, Juha, additional, Coltman, David W, additional, Bruford, Michael W, additional, Lenstra, Johannes A, additional, and Li, Meng-Hua, additional
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- 2021
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7. Historical introgression from wild relatives enhanced climatic adaptation and resistance to pneumonia in sheep
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Cao, Yin-Hong, Xu, Song-Song, Shen, Min, Chen, Ze-Hui, Gao, Lei, Lv, Feng-Hua, Xie, Xing-Long, Wang, Xin-Hua, Yang, Hua, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Yang, Jing-Quan, Pi, Wen-Hui, EEr, Hehua, Berry, Donagh P, Barbato, Mario, Esmailizadeh, Ali, Nosrati, Maryam, Salehian-Dehkordi, Hosein, Dehghani-Qanatqestani, Mostafa, Dotsev, Arsen V, Deniskova, Tatiana E, Zinovieva, Natalia A, Brem, Gottfried, Štěpánek, Ondřej, Ciani, Elena, Weimann, Christina, Erhardt, Georg, Mwacharo, Joram M, Ahbara, Abulgasim, Han, Jian-Lin, Hanotte, Olivier, Miller, Joshua M, Sim, Zijian, Coltman, David, Kantanen, Juha, Bruford, Michael W, Lenstra, Johannes A, Kijas, James, Li, Meng-Hua, Cao, Yin-Hong, Xu, Song-Song, Shen, Min, Chen, Ze-Hui, Gao, Lei, Lv, Feng-Hua, Xie, Xing-Long, Wang, Xin-Hua, Yang, Hua, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Yang, Jing-Quan, Pi, Wen-Hui, EEr, Hehua, Berry, Donagh P, Barbato, Mario, Esmailizadeh, Ali, Nosrati, Maryam, Salehian-Dehkordi, Hosein, Dehghani-Qanatqestani, Mostafa, Dotsev, Arsen V, Deniskova, Tatiana E, Zinovieva, Natalia A, Brem, Gottfried, Štěpánek, Ondřej, Ciani, Elena, Weimann, Christina, Erhardt, Georg, Mwacharo, Joram M, Ahbara, Abulgasim, Han, Jian-Lin, Hanotte, Olivier, Miller, Joshua M, Sim, Zijian, Coltman, David, Kantanen, Juha, Bruford, Michael W, Lenstra, Johannes A, Kijas, James, and Li, Meng-Hua
- Abstract
How animals, particularly livestock, adapt to various climates and environments over short evolutionary time is of fundamental biological interest. Further, understanding the genetic mechanisms of adaptation in indigenous livestock populations is important for designing appropriate breeding programs to cope with the impacts of changing climate. Here we conducted a comprehensive genomic analysis of diversity, interspecies introgression and climate-mediated selective signatures in a global sample of sheep and their wild relatives. By examining 600k and 50k genome-wide SNP data from 3447 samples representing 111 domestic sheep populations and 403 samples from all their seven wild relatives (argali, Asiatic mouflon, European mouflon, urial, snow sheep, bighorn and thinhorn sheep), coupled with 88 whole-genome sequences, we detected clear signals of common introgression from wild relatives into sympatric domestic populations, thereby increasing their genomic diversities. The introgressions provided beneficial genetic variants in native populations, which were significantly associated with local climatic adaptation. We observed common introgression signals of alleles in olfactory-related genes (e.g., ADCY3 and TRPV1) and the PADI gene family including in particular PADI2, which is associated with antibacterial innate immunity. Further analyses of whole-genome sequences showed that the introgressed alleles in a specific region of PADI2 (chr2: 248302667-248306614) correlate with resistance to pneumonia. We conclude that wild introgression enhanced climatic adaptation and resistance to pneumonia in sheep. This has enabled them to adapt to varying climatic and environmental conditions after domestication.
- Published
- 2021
8. Historical introgression from wild relatives enhanced climatic adaptation and resistance to pneumonia in sheep
- Author
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One Health Toxicologie, Afd Pharmacology, Cao, Yin-Hong, Xu, Song-Song, Shen, Min, Chen, Ze-Hui, Gao, Lei, Lv, Feng-Hua, Xie, Xing-Long, Wang, Xin-Hua, Yang, Hua, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Yang, Jing-Quan, Pi, Wen-Hui, EEr, Hehua, Berry, Donagh P, Barbato, Mario, Esmailizadeh, Ali, Nosrati, Maryam, Salehian-Dehkordi, Hosein, Dehghani-Qanatqestani, Mostafa, Dotsev, Arsen V, Deniskova, Tatiana E, Zinovieva, Natalia A, Brem, Gottfried, Štěpánek, Ondřej, Ciani, Elena, Weimann, Christina, Erhardt, Georg, Mwacharo, Joram M, Ahbara, Abulgasim, Han, Jian-Lin, Hanotte, Olivier, Miller, Joshua M, Sim, Zijian, Coltman, David, Kantanen, Juha, Bruford, Michael W, Lenstra, Johannes A, Kijas, James, Li, Meng-Hua, One Health Toxicologie, Afd Pharmacology, Cao, Yin-Hong, Xu, Song-Song, Shen, Min, Chen, Ze-Hui, Gao, Lei, Lv, Feng-Hua, Xie, Xing-Long, Wang, Xin-Hua, Yang, Hua, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Yang, Jing-Quan, Pi, Wen-Hui, EEr, Hehua, Berry, Donagh P, Barbato, Mario, Esmailizadeh, Ali, Nosrati, Maryam, Salehian-Dehkordi, Hosein, Dehghani-Qanatqestani, Mostafa, Dotsev, Arsen V, Deniskova, Tatiana E, Zinovieva, Natalia A, Brem, Gottfried, Štěpánek, Ondřej, Ciani, Elena, Weimann, Christina, Erhardt, Georg, Mwacharo, Joram M, Ahbara, Abulgasim, Han, Jian-Lin, Hanotte, Olivier, Miller, Joshua M, Sim, Zijian, Coltman, David, Kantanen, Juha, Bruford, Michael W, Lenstra, Johannes A, Kijas, James, and Li, Meng-Hua
- Published
- 2021
9. Paternal Origins and Migratory Episodes of Domestic Sheep
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Deng, Juan, Xie, Xing-Long, Wang, Dong-Feng, Zhao, Chao, Lv, Feng-Hua, Li, Xin, Yang, Ji, Yu, Jia-Lin, Shen, Min, Gao, Lei, Yang, Jing-Quan, Liu, Ming-Jun, Li, Wen-Rong, Wang, Yu-Tao, Wang, Feng, Li, Jin-Quan, Hehua, EEr, Liu, Yong-Gang, Shen, Zhi-Qiang, Ren, Yan-Ling, Liu, Guang-Jian, Chen, Ze-Hui, Gorkhali, Neena A., Rushdi, Hossam E., Salehian-Dehkordi, Hosein, Esmailizadeh, Ali, Nosrati, Maryam, Paiva, Samuel R., Caetano, Alexandre R., Štěpánek, Ondřej, Olsaker, Ingrid, Weimann, Christina, Erhardt, Georg, Curik, Ino, Kantanen, Juha, Mwacharo, Joram M., Hanotte, Olivier, Bruford, Michael W., Ciani, Elena, Periasamy, Kathiravan, Amills, Marcel, Lenstra, Johannes A., Han, Jian-Lin, Zhang, Hong-Ping, Li, Li, and Li, Meng-Hua
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- 2020
- Full Text
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10. NADPH oxidase-2 is a key regulator of human dermal fibroblasts: a potential therapeutic strategy for the treatment of skin fibrosis
- Author
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Zhang, Guo-You, Wu, Liang-Cai, Dai, Tao, Chen, Shi-Yi, Wang, An-Yuan, Lin, Kang, Lin, Da-Mu, Yang, Jing-Quan, Cheng, Biao, Zhang, Li, Gao, Wei-Yang, and Li, Zhi-Jie
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- 2014
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11. Activation of peroxisome proliferator-activated receptor-γ inhibits transforming growth factor-β1 induction of connective tissue growth factor and extracellular matrix in hypertrophic scar fibroblasts in vitro
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Zhang, Guo-You, Cheng, Tao, Zheng, Ming-Hua, Yi, Cheng-Gang, Pan, Hua, Li, Zhi-Jie, Chen, Xing-Long, Yu, Qing, Jiang, Liang-Fu, Zhou, Fei-Ya, Li, Xiao-Yang, Yang, Jing-Quan, Chu, Ting-Gang, and Gao, Wei-Yang
- Published
- 2009
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12. Paternal Origins and Migratory Episodes of Domestic Sheep
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Sub Cellular Protein Chemistry, One Health Toxicologie, Sub Mathematical Modeling, Sub Overig UiLOTS, Afd Pharmacology, Deng, Juan, Xie, Xing-Long, Wang, Dong-Feng, Zhao, Chao, Lv, Feng-Hua, Li, Xin, Yang, Ji, Yu, Jia-Lin, Shen, Min, Gao, Lei, Yang, Jing-Quan, Liu, Ming-Jun, Li, Wen-Rong, Wang, Yu-Tao, Wang, Feng, Li, Jin-Quan, Hehua, EEr, Liu, Yong-Gang, Shen, Zhi-Qiang, Ren, Yan-Ling, Liu, Guang-Jian, Chen, Ze-Hui, Gorkhali, Neena A, Rushdi, Hossam E, Salehian-Dehkordi, Hosein, Esmailizadeh, Ali, Nosrati, Maryam, Paiva, Samuel R, Caetano, Alexandre R, Štěpánek, Ondřej, Olsaker, Ingrid, Weimann, Christina, Erhardt, Georg, Curik, Ino, Kantanen, Juha, Mwacharo, Joram M, Hanotte, Olivier, Bruford, Michael W, Ciani, Elena, Periasamy, Kathiravan, Amills, Marcel, Lenstra, Johannes A, Han, Jian-Lin, Zhang, Hong-Ping, Li, Li, Li, Meng-Hua, Sub Cellular Protein Chemistry, One Health Toxicologie, Sub Mathematical Modeling, Sub Overig UiLOTS, Afd Pharmacology, Deng, Juan, Xie, Xing-Long, Wang, Dong-Feng, Zhao, Chao, Lv, Feng-Hua, Li, Xin, Yang, Ji, Yu, Jia-Lin, Shen, Min, Gao, Lei, Yang, Jing-Quan, Liu, Ming-Jun, Li, Wen-Rong, Wang, Yu-Tao, Wang, Feng, Li, Jin-Quan, Hehua, EEr, Liu, Yong-Gang, Shen, Zhi-Qiang, Ren, Yan-Ling, Liu, Guang-Jian, Chen, Ze-Hui, Gorkhali, Neena A, Rushdi, Hossam E, Salehian-Dehkordi, Hosein, Esmailizadeh, Ali, Nosrati, Maryam, Paiva, Samuel R, Caetano, Alexandre R, Štěpánek, Ondřej, Olsaker, Ingrid, Weimann, Christina, Erhardt, Georg, Curik, Ino, Kantanen, Juha, Mwacharo, Joram M, Hanotte, Olivier, Bruford, Michael W, Ciani, Elena, Periasamy, Kathiravan, Amills, Marcel, Lenstra, Johannes A, Han, Jian-Lin, Zhang, Hong-Ping, Li, Li, and Li, Meng-Hua
- Published
- 2020
13. Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits
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Sub Cellular Protein Chemistry, One Health Toxicologie, Afd Pharmacology, Li, Xin, Yang, Ji, Shen, Min, Xie, Xing-Long, Liu, Guang-Jian, Xu, Ya-Xi, Lv, Feng-Hua, Yang, Hua, Yang, Yong-Lin, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Gao, Lei, Yang, Jing-Quan, Pi, Wen-Hui, Ren, Yan-Ling, Shen, Zhi-Qiang, Wang, Feng, Deng, Juan, Xu, Song-Song, Salehian-Dehkordi, Hosein, Hehua, Eer, Esmailizadeh, Ali, Dehghani-Qanatqestani, Mostafa, Štěpánek, Ondřej, Weimann, Christina, Erhardt, Georg, Amane, Agraw, Mwacharo, Joram M, Han, Jian-Lin, Hanotte, Olivier, Lenstra, Johannes A, Kantanen, Juha, Coltman, David W, Kijas, James W, Bruford, Michael W, Periasamy, Kathiravan, Wang, Xin-Hua, Li, Meng-Hua, Sub Cellular Protein Chemistry, One Health Toxicologie, Afd Pharmacology, Li, Xin, Yang, Ji, Shen, Min, Xie, Xing-Long, Liu, Guang-Jian, Xu, Ya-Xi, Lv, Feng-Hua, Yang, Hua, Yang, Yong-Lin, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Gao, Lei, Yang, Jing-Quan, Pi, Wen-Hui, Ren, Yan-Ling, Shen, Zhi-Qiang, Wang, Feng, Deng, Juan, Xu, Song-Song, Salehian-Dehkordi, Hosein, Hehua, Eer, Esmailizadeh, Ali, Dehghani-Qanatqestani, Mostafa, Štěpánek, Ondřej, Weimann, Christina, Erhardt, Georg, Amane, Agraw, Mwacharo, Joram M, Han, Jian-Lin, Hanotte, Olivier, Lenstra, Johannes A, Kantanen, Juha, Coltman, David W, Kijas, James W, Bruford, Michael W, Periasamy, Kathiravan, Wang, Xin-Hua, and Li, Meng-Hua
- Published
- 2020
14. Paternal origins and migratory episodes of domestic sheep
- Author
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National Key Research and Development Program (China), Chinese Academy of Sciences, National Natural Science Foundation of China, Natural Science Foundation of Shandong Province, Deng, Juan, Xie, Xing-Long, Wang, Dong-Feng, Zhao, Chao, Lv, Feng-Hua, Li, Xin, Yang, Ji, Yu, Jia-Lin, Shen, Min, Gao, Lei, Yang, Jing-Quan, Liu, Ming-Jun, Li, Wen-Rong, Wang, Yu-Tao, Wang, Feng, Li, Jin-Quan, Hehua, Eer, Liu, Yong-Gang, Shen, Zhi-Qiang, Ren, Yan-Ling, Liu, Guang-Jian, Chen, Ze-Hui, Gorkhali, Neena A., Rushdi, Hossam E., Salehian-Dehkordi, Hosein, Esmailizadeh, Ali, Nosrati, Maryam, National Key Research and Development Program (China), Chinese Academy of Sciences, National Natural Science Foundation of China, Natural Science Foundation of Shandong Province, Deng, Juan, Xie, Xing-Long, Wang, Dong-Feng, Zhao, Chao, Lv, Feng-Hua, Li, Xin, Yang, Ji, Yu, Jia-Lin, Shen, Min, Gao, Lei, Yang, Jing-Quan, Liu, Ming-Jun, Li, Wen-Rong, Wang, Yu-Tao, Wang, Feng, Li, Jin-Quan, Hehua, Eer, Liu, Yong-Gang, Shen, Zhi-Qiang, Ren, Yan-Ling, Liu, Guang-Jian, Chen, Ze-Hui, Gorkhali, Neena A., Rushdi, Hossam E., Salehian-Dehkordi, Hosein, Esmailizadeh, Ali, and Nosrati, Maryam
- Abstract
The domestication and subsequent global dispersal of livestock are crucial events in human history, but the migratory episodes during the history of livestock remain poorly documented [1, 2, 3]. Here, we first developed a set of 493 novel ovine SNPs of the male-specific region of Y chromosome (MSY) by genome mapping. We then conducted a comprehensive genomic analysis of Y chromosome, mitochondrial DNA, and whole-genome sequence variations in a large number of 595 rams representing 118 domestic populations across the world. We detected four different paternal lineages of domestic sheep and resolved, at the global level, their paternal origins and differentiation. In Northern European breeds, several of which have retained primitive traits (e.g., a small body size and short or thin tails), and fat-tailed sheep, we found an overrepresentation of MSY lineages y-HC and y-HB, respectively. Using an approximate Bayesian computation approach, we reconstruct the demographic expansions associated with the segregation of primitive and fat-tailed phenotypes. These results together with archaeological evidence and historical data suggested the first expansion of early domestic hair sheep and the later expansion of fat-tailed sheep occurred ∼11,800–9,000 years BP and ∼5,300–1,700 years BP, respectively. These findings provide important insights into the history of migration and pastoralism of sheep across the Old World, which was associated with different breeding goals during the Neolithic agricultural revolution.
- Published
- 2020
15. Historical introgression from wild relatives enhanced climatic adaptation and resistance to pneumonia in sheep
- Author
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Cao, Yin-Hong, Xu, Song-Song, Shen, Min, Chen, Ze-Hui, Gao, Lei, Lv, Feng-Hua, Xie, Xing-Long, Wang, Xin-Hua, Yang, Hua, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Yang, Jing-Quan, Pi, Wen-Hui, EEr, Hehua, Berry, Donagh P, Barbato, Mario, Esmailizadeh, Ali, Nosrati, Maryam, Salehian-Dehkordi, Hosein, Dehghani-Qanatqestani, Mostafa, Dotsev, Arsen V, Deniskova, Tatiana E, Zinovieva, Natalia A, Brem, Gottfried, Štěpánek, Ondřej, Ciani, Elena, Weimann, Christina, Erhardt, Georg, Mwacharo, Joram M, Ahbara, Abulgasim, Han, Jian-Lin, Hanotte, Olivier, Miller, Joshua M, Sim, Zijian, Coltman, David, Kantanen, Juha, Bruford, Michael W, Lenstra, Johannes A, Kijas, Jame, Li, Meng-Hua, Barbato, Mario (ORCID:0000-0002-7203-1549), Cao, Yin-Hong, Xu, Song-Song, Shen, Min, Chen, Ze-Hui, Gao, Lei, Lv, Feng-Hua, Xie, Xing-Long, Wang, Xin-Hua, Yang, Hua, Liu, Chang-Bin, Zhou, Ping, Wan, Peng-Cheng, Zhang, Yun-Sheng, Yang, Jing-Quan, Pi, Wen-Hui, EEr, Hehua, Berry, Donagh P, Barbato, Mario, Esmailizadeh, Ali, Nosrati, Maryam, Salehian-Dehkordi, Hosein, Dehghani-Qanatqestani, Mostafa, Dotsev, Arsen V, Deniskova, Tatiana E, Zinovieva, Natalia A, Brem, Gottfried, Štěpánek, Ondřej, Ciani, Elena, Weimann, Christina, Erhardt, Georg, Mwacharo, Joram M, Ahbara, Abulgasim, Han, Jian-Lin, Hanotte, Olivier, Miller, Joshua M, Sim, Zijian, Coltman, David, Kantanen, Juha, Bruford, Michael W, Lenstra, Johannes A, Kijas, Jame, Li, Meng-Hua, and Barbato, Mario (ORCID:0000-0002-7203-1549)
- Abstract
How animals, particularly livestock, adapt to various climates and environments over short evolutionary time is of fundamental biological interest. Further, understanding the genetic mechanisms of adaptation in indigenous livestock populations is important for designing appropriate breeding programs to cope with the impacts of changing climate. Here we conducted a comprehensive genomic analysis of diversity, interspecies introgression and climate-mediated selective signatures in a global sample of sheep and their wild relatives. By examining 600k and 50k genome-wide SNP data from 3447 samples representing 111 domestic sheep populations and 403 samples from all their seven wild relatives (argali, Asiatic mouflon, European mouflon, urial, snow sheep, bighorn and thinhorn sheep), coupled with 88 whole-genome sequences, we detected clear signals of common introgression from wild relatives into sympatric domestic populations, thereby increasing their genomic diversities. The introgressions provided beneficial genetic variants in native populations, which were significantly associated with local climatic adaptation. We observed common introgression signals of alleles in olfactory-related genes (e.g., ADCY3 and TRPV1) and the PADI gene family including in particular PADI2, which is associated with antibacterial innate immunity. Further analyses of whole-genome sequences showed that the introgressed alleles in a specific region of PADI2 (chr2: 248302667-248306614) correlate with resistance to pneumonia. We conclude that wild introgression enhanced climatic adaptation and resistance to pneumonia in sheep. This has enabled them to adapt to varying climatic and environmental conditions after domestication.
- Published
- 2020
16. Historical Introgression from Wild Relatives Enhanced Climatic Adaptation and Resistance to Pneumonia in Sheep
- Author
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Cao, Yin-Hong, primary, Xu, Song-Song, additional, Shen, Min, additional, Chen, Ze-Hui, additional, Gao, Lei, additional, Lv, Feng-Hua, additional, Xie, Xing-Long, additional, Wang, Xin-Hua, additional, Yang, Hua, additional, Liu, Chang-Bin, additional, Zhou, Ping, additional, Wan, Peng-Cheng, additional, Zhang, Yun-Sheng, additional, Yang, Jing-Quan, additional, Pi, Wen-Hui, additional, Hehua, EEr, additional, Berry, Donagh P, additional, Barbato, Mario, additional, Esmailizadeh, Ali, additional, Nosrati, Maryam, additional, Salehian-Dehkordi, Hosein, additional, Dehghani-Qanatqestani, Mostafa, additional, Dotsev, Arsen V, additional, Deniskova, Tatiana E, additional, Zinovieva, Natalia A, additional, Brem, Gottfried, additional, Štěpánek, Ondřej, additional, Ciani, Elena, additional, Weimann, Christina, additional, Erhardt, Georg, additional, Mwacharo, Joram M, additional, Ahbara, Abulgasim, additional, Han, Jian-Lin, additional, Hanotte, Olivier, additional, Miller, Joshua M, additional, Sim, Zijian, additional, Coltman, David, additional, Kantanen, Juha, additional, Bruford, Michael W, additional, Lenstra, Johannes A, additional, Kijas, James, additional, and Li, Meng-Hua, additional
- Published
- 2020
- Full Text
- View/download PDF
17. Effects of berberine on the growth performance, antioxidative capacity and immune response to lipopolysaccharide challenge in broilers
- Author
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Yang, Li, primary, Liu, Gang, additional, Liang, Xiaorui, additional, Wang, Mengmeng, additional, Zhu, Xiaoqing, additional, Luo, Yan, additional, Shang, Yunxia, additional, Yang, Jing‐quan, additional, Zhou, Ping, additional, and Gu, Xin‐Li, additional
- Published
- 2019
- Full Text
- View/download PDF
18. Expression profile analysis of microRNAs during hair follicle development in the sheep foetus
- Author
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Yang, Han-Yu-Lu, primary, Yang, Hua, additional, Shi, Guo-Qing, additional, Shen, Min, additional, Yang, Jing–Quan, additional, Yang, Yong-Lin, additional, and Liu, Xiao-Jun, additional
- Published
- 2019
- Full Text
- View/download PDF
19. Detection and analysis of polymorphisms of 59571364 and 59912586 loci on X chromosome in fat-tail and thin-tail sheep flocks
- Author
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ZHANG, Wei, primary, SHEN, Min, additional, LI, Huan, additional, GAO, Lei, additional, LIANG, Yao-Wei, additional, YANG, Jing-Quan, additional, LIU, Shou-Ren, additional, WANG, Xin-Hua, additional, and GAN, Shang-Quan, additional
- Published
- 2013
- Full Text
- View/download PDF
20. Correlation analysis between polymorphism of the 59383635th locus on X chromosome and fat-tail trait in sheep
- Author
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GAN, Shang-Quan, primary, ZHANG, Wei, additional, SHEN, Min, additional, LI, Huan, additional, YANG, Jing-Quan, additional, LIANG, Yao-Wei, additional, GAO, Lei, additional, LIU, Shou-Ren, additional, and WANG, Xin-Hua, additional
- Published
- 2013
- Full Text
- View/download PDF
21. Cloning and expression in follicle anagen of ILK gene in sheep
- Author
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YANG, Jian-Bo, primary, GAN, Shang-Quan, additional, YANG, Yong-Lin, additional, ZHANG, Hong-Lin, additional, SONG, Tian-Zeng, additional, FENG, Jing, additional, YANG, Jing-Quan, additional, GAO, Lei, additional, SHI, Guo-Qing, additional, and SHEN, Min, additional
- Published
- 2012
- Full Text
- View/download PDF
22. Performance Research of Positive Pressure Bio-Protection Suit Polyurethane Antibacterial Composite Fabric
- Author
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Wu, Jin Hui, primary, Tian, Tao, additional, Hao, Li Mei, additional, Yang, Jing Quan, additional, and Wang, Zheng, additional
- Published
- 2012
- Full Text
- View/download PDF
23. One-pot fabrication and antimicrobial properties of novel PET nonwoven fabrics
- Author
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Lin, Song, primary, Wang, Zheng, additional, Qi, Jian-cheng, additional, Wu, Jin-hui, additional, Tian, Tao, additional, Hou, Li-li, additional, Hao, Li-mei, additional, and Yang, Jing-quan, additional
- Published
- 2011
- Full Text
- View/download PDF
24. Study on an Air Filter Material Immobilized with Bio-Antimicrobials
- Author
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Yang, Jing Quan, primary, Wang, Zheng, additional, Wu, Jin Hui, additional, Hao, Li Mei, additional, Tian, Tao, additional, and Lin, Song, additional
- Published
- 2010
- Full Text
- View/download PDF
25. Preparation of a Novel Bio-Antibacterial PET Nonwoven Fabrics and Antibacterial Activity Evaluation
- Author
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Yang, Jing-quan, primary, Hao, Li-mei, additional, Wang, Shuang, additional, Hou, Li-li, additional, and Wu, Jin-hui, additional
- Published
- 2010
- Full Text
- View/download PDF
26. Preparation and Characterization of Antibacterial Electrospun Polyurethane Fibers Containing TiO2-Ag Nanoparticles
- Author
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Xia, Su, primary, Wang, Zheng, additional, Yang, Jing Quan, additional, Hao, Li Mei, additional, and Wu, Jin Hui, additional
- Published
- 2009
- Full Text
- View/download PDF
27. Preparation and Characterization of Antibacterial Electrospun Polyurethane Fibers Containing TiO2-Ag Nanoparticles
- Author
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Xia, Su, Wang, Zheng, Yang, Jing Quan, Hao, Li Mei, and Wu, Jin Hui
- Abstract
A novel antibacterial material was prepared by electrospining polyurethane (PU) containing TiO2-Ag nanoparticles in this study. The average diameter of PU electrospun nanofibers decreased with increasing concentration of TiO2-Ag.These nanofibers membrane showed high antibacterial activities against Staphylococcus aureus and Escherichia coli, respectively. The mixed mode of PU electrospun fibers and TiO2-Ag nanoparticles was a physical form. The addition of TiO2-Ag did not affect the mechanical property of the mat much.
- Published
- 2009
- Full Text
- View/download PDF
28. Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci.
- Author
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Lv FH, Cao YH, Liu GJ, Luo LY, Lu R, Liu MJ, Li WR, Zhou P, Wang XH, Shen M, Gao L, Yang JQ, Yang H, Yang YL, Liu CB, Wan PC, Zhang YS, Pi WH, Ren YL, Shen ZQ, Wang F, Wang YT, Li JQ, Salehian-Dehkordi H, Hehua E, Liu YG, Chen JF, Wang JK, Deng XM, Esmailizadeh A, Dehghani-Qanatqestani M, Charati H, Nosrati M, Štěpánek O, Rushdi HE, Olsaker I, Curik I, Gorkhali NA, Paiva SR, Caetano AR, Ciani E, Amills M, Weimann C, Erhardt G, Amane A, Mwacharo JM, Han JL, Hanotte O, Periasamy K, Johansson AM, Hallsson JH, Kantanen J, Coltman DW, Bruford MW, Lenstra JA, and Li MH
- Subjects
- Animals, Asia, Europe, Genetic Variation, Iran, Polymorphism, Single Nucleotide, Sequence Analysis, DNA, Sheep genetics, Genome, Sheep, Domestic genetics
- Abstract
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the backbone of molecular breeding, but their genome landscapes remain understudied. Here, we present a comprehensive genome resource for wild ovine species, landraces and improved breeds of domestic sheep, comprising high-coverage (∼16.10×) whole genomes of 810 samples from 7 wild species and 158 diverse domestic populations. We detected, in total, ∼121.2 million single nucleotide polymorphisms, ∼61 million of which are novel. Some display significant (P < 0.001) differences in frequency between wild and domestic species, or are private to continent-wide or individual sheep populations. Retained or introgressed wild gene variants in domestic populations have contributed to local adaptation, such as the variation in the HBB associated with plateau adaptation. We identified novel and previously reported targets of selection on morphological and agronomic traits such as stature, horn, tail configuration, and wool fineness. We explored the genetic basis of wool fineness and unveiled a novel mutation (chr25: T7,068,586C) in the 3'-UTR of IRF2BP2 as plausible causal variant for fleece fiber diameter. We reconstructed prehistorical migrations from the Near Eastern domestication center to South-and-Southeast Asia and found two main waves of migrations across the Eurasian Steppe and the Iranian Plateau in the Early and Late Bronze Ages. Our findings refine our understanding of genome variation as shaped by continental migrations, introgression, adaptation, and selection of sheep., (© The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
- Published
- 2022
- Full Text
- View/download PDF
29. Historical Introgression from Wild Relatives Enhanced Climatic Adaptation and Resistance to Pneumonia in Sheep.
- Author
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Cao YH, Xu SS, Shen M, Chen ZH, Gao L, Lv FH, Xie XL, Wang XH, Yang H, Liu CB, Zhou P, Wan PC, Zhang YS, Yang JQ, Pi WH, Hehua E, Berry DP, Barbato M, Esmailizadeh A, Nosrati M, Salehian-Dehkordi H, Dehghani-Qanatqestani M, Dotsev AV, Deniskova TE, Zinovieva NA, Brem G, Štěpánek O, Ciani E, Weimann C, Erhardt G, Mwacharo JM, Ahbara A, Han JL, Hanotte O, Miller JM, Sim Z, Coltman D, Kantanen J, Bruford MW, Lenstra JA, Kijas J, and Li MH
- Subjects
- Animals, Biological Evolution, Climate Change, Genetic Variation, Phylogeography, Pneumonia immunology, Sheep immunology, Adaptation, Biological genetics, Disease Resistance genetics, Genetic Introgression, Sheep genetics
- Abstract
How animals, particularly livestock, adapt to various climates and environments over short evolutionary time is of fundamental biological interest. Further, understanding the genetic mechanisms of adaptation in indigenous livestock populations is important for designing appropriate breeding programs to cope with the impacts of changing climate. Here, we conducted a comprehensive genomic analysis of diversity, interspecies introgression, and climate-mediated selective signatures in a global sample of sheep and their wild relatives. By examining 600K and 50K genome-wide single nucleotide polymorphism data from 3,447 samples representing 111 domestic sheep populations and 403 samples from all their seven wild relatives (argali, Asiatic mouflon, European mouflon, urial, snow sheep, bighorn, and thinhorn sheep), coupled with 88 whole-genome sequences, we detected clear signals of common introgression from wild relatives into sympatric domestic populations, thereby increasing their genomic diversities. The introgressions provided beneficial genetic variants in native populations, which were significantly associated with local climatic adaptation. We observed common introgression signals of alleles in olfactory-related genes (e.g., ADCY3 and TRPV1) and the PADI gene family including in particular PADI2, which is associated with antibacterial innate immunity. Further analyses of whole-genome sequences showed that the introgressed alleles in a specific region of PADI2 (chr2: 248,302,667-248,306,614) correlate with resistance to pneumonia. We conclude that wild introgression enhanced climatic adaptation and resistance to pneumonia in sheep. This has enabled them to adapt to varying climatic and environmental conditions after domestication., (© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
- Published
- 2021
- Full Text
- View/download PDF
30. [Predictive value of radiological parameter for re-displacement of conservative treatment of distal radius fracture].
- Author
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Zhou FY, Gao WY, Jiang LF, Song YH, Chi ZL, Yang JQ, Ding J, and Chu TG
- Subjects
- Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Predictive Value of Tests, Radiography, Radius Fractures diagnostic imaging, Radius Fractures therapy
- Abstract
Objective: To analyze the radiological parameters of the conservatively in treating distal radius fracture and investigate whether the final re-displacement can be predicted after primary reduction., Methods: From January 2013 to June 2014,212 patients with distal radial fracture conservatively were treated in our hospital, 107 patients of them were excluded because of their incomplete radiological parameters;the remaining 105 patients were available for radiological were assessed after injury, there were 56 male patients and 49 female patients in this study, the average age of the patients was 51 years old (ranged from 22 to 80 years). According to AO classification, there were 47 cases of type A2 and C1, and 58 cases of type A3, C2, C3. All patients were treated by closed reduction and below-elbow cast immobilization for 4 to 6 weeks. All patients were followed up for 3 to 6 months (means 4.5 months) by X-ray, all fractures were healed. Standard AP and lateral radiographic examination was conducted before reduction and after reduction and bony consolidation,the dorsal angulation and the radial angle were measured at each time point. The linear regression was used for the analysis to find out whether the final re-displacement can be predicted after primary reduction., Results: Among 105 patients,the significant correlations were found for the dorsal angulation between the reduction time and the end time (r = 0.82) and for the radial angulation between the reduction time and end time (r = 0.85)., Conclusion: The dorsal angulation and the radial angulation after complete healing can be predicted from linear the regression functions. Due to the possibility of predicting the end result, whether the fracture should receive further conservative treatment or surgical treatment can be decided immediately.
- Published
- 2016
31. [Molecular cloning and tissue expression of the CCNG1 gene in sheep].
- Author
-
Gao L, Shen M, Gan SQ, Yang JQ, and Zhang YY
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cyclin G1 metabolism, Female, Humans, Kidney metabolism, Molecular Sequence Data, Open Reading Frames, Ovary metabolism, Pituitary Gland metabolism, Sheep metabolism, Spleen metabolism, Tissue Distribution, Cloning, Molecular, Cyclin G1 genetics, Sheep genetics
- Abstract
The CCNG1 gene encodes cyclin G1, which is an important cell cycle regulator and has been reported to be involved in reproductive biological processes, such as oocyte maturation and granule cell proliferation in mammals. But the study of CCNG1 in sheep has been rarely reported. To examine the effects of CCNG1 on estrous control and seasonal breeding in sheep, we first cloned and characterized the expression level of the sheep CCNG1 gene. Then by Real-time PCR, we detected and analyzed the expressions of CCNG1 gene at mRNA levels in the hypothalamus-pituitary-ovary (HPO) axis in different stages of an estrous cycle in Duo Lang sheep (non-seasonal breeding) and Merino sheep (seasonal breeding). The results showed that the open reading frame of the sheep CCNG1 gene is 885 bp in length and encodes 294 amino acids. Bioinformatic analysis indicated that the secondary structure of the sheep CCNG1 protein contained multiple phosphorylation sites and some Protein Kinase C phosphorylation sites. CCNG1 mRNA was identified in all tissues tested, with the levels in ovary and kidney higher than others. The expression profiles of CCNG1 in the HPO axis in different stages of an estrous cycle were similar in different sheep breeds: the expression levels of CCNG1 in the ovary, uterus, pineal gland and pituitary gland all peaked in the estrus phase. But there were significant differences for expression change extent of CCNG1 in ovaries in the oestrus and metestrus phase between different sheep breeds. The results suggested that CCNG1 probably participated in the regulation of estrous behavior and seasonal reproduction through controling the growth and development of follicles in sheep.
- Published
- 2015
- Full Text
- View/download PDF
32. [Detection and analysis of polymorphisms of 59571364 and 59912586 loci on X chromosome in fat-tail and thin-tail sheep flocks].
- Author
-
Zhang W, Shen M, Li H, Gao L, Liang YW, Yang JQ, Liu SR, Wang XH, and Gan SQ
- Subjects
- Animals, Gene Frequency genetics, Genotype, Polymerase Chain Reaction, Sheep, Polymorphism, Genetic genetics, X Chromosome genetics
- Abstract
In order to analyze the correlation of tail fat deposition and two SNP loci on Ovis arise chromosome X and provide a theoretical basis for using molecular assisted selection technology in further low-fat sheep breeding, the breeds with extreme differences in tail types (Altay, Small Tail Han Sheep, Hu, Chinese Merino and Suffolk) were used to detect the polymorphisms of two SNP loci on X chromosome and the haplotypes with PCR-RFLP method. The results showed that the TT genotype at 59571364 locus and GG genotype at 59912586 locus were preponderant genotypes in thin-tailed Chinese Merino and Suffolk sheep flocks, while the percentage of the two genotypes in fat-tailed (fat-rmup) Altay and Hu flocks is less than 2%. Haplotype analysis showed that CA haplotype is the main haplotype, the percentage of CA is up to 55%, and the percentage of CA and TA haplotypes together was 88.33% in Altay sheep flock. These results suggest that there are great differences in the SNP distribution of the 59571364 and 59912586 loci among different tail-typed sheep flocks, which can be used as molecular markers in high or low fat sheep breeding.
- Published
- 2013
- Full Text
- View/download PDF
33. [Correlation analysis between polymorphism of the 59383635th locus on X chromosome and fat-tail trait in sheep].
- Author
-
Gan SQ, Zhang W, Shen M, Li H, Yang JQ, Liang YW, Gao L, Liu SR, and Wang XH
- Subjects
- Animals, Base Sequence, Female, Molecular Sequence Data, Sheep classification, Polymorphism, Single Nucleotide, Quantitative Trait, Heritable, Sheep genetics, X Chromosome genetics
- Abstract
Fat tail or fat rump is one of essential traits for surviving in harsh environments, and the mechanism of fat deposition and its inheritable characters in sheep are still unclear. Therefore, the 59383635th locus on X chromosome in our unpublished chip data was chosen as candidate SNP, PCR-SSCP method was used to detect genotypes in five sheep breeds which have extreme differences in tail types (Altay, Small Tail Han Sheep, Hu, Chinese Merino and Suffolk), and the mathematical model was employed to analyze the correlation between the polymorphism and the trait of fat tail or fat rump. The results in this study showed that the high frequency of allele T exists in Altay flock, and the frequency of allele C appears to be particularly high in the thin tail sheep breeds. The result of mathematical model showed that the ratio of T/C increased exponentially with the increase of phenotype score. These results suggest that there is a big difference in the SNP distribution between fat tail (rump) and thin tail sheep populations, and the SNP can be used as an ideal molecular marker in high-fat or low-fat sheep breeding. However, the biological function of the SNP remains to be further studied.
- Published
- 2013
- Full Text
- View/download PDF
34. [Cloning and expression in follicle anagen of ILK gene in sheep].
- Author
-
Yang JB, Gan SQ, Yang YL, Zhang HL, Song TZ, Feng J, Yang JQ, Gao L, Shi GQ, and Shen M
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular methods, Computational Biology methods, DNA, Complementary genetics, Gene Expression Profiling methods, Hair Follicle metabolism, Molecular Sequence Data, Open Reading Frames, Protein Serine-Threonine Kinases metabolism, Sheep metabolism, Skin metabolism, Hair Follicle physiology, Protein Serine-Threonine Kinases biosynthesis, Protein Serine-Threonine Kinases genetics, Sheep genetics
- Abstract
Integrin linked kinase (ILK) is a scaffold protein, which plays important roles in hair follicle development. The cDNA sequence of novel ILK gene in sheep was cloned by PCR method and analyzed by bioinformatics. Tissue expression profiling in eight tissues and temporal profiling at different wool follicle anagen stages in skin was analyzed. The results showed that the whole open reading frame (ORF) of ILK gene was 1 359 bp in length, which encoded 452 amino acids. Bioinformatic analysis indicated that the secondary structure of ILK gene was mainly made up of three ankyrin repeats and a kinase domain, and there were multiple phosphorylation and Protein Kinase C sites in this gene. The RT-PCR result confirmed that ILK mRNA was expressed in heart, liver, spleen, lung, skeletal muscle, skin, and small intestine, and the expression level was much higher in skin, spleen, and liver than others. The q-PCR analysis demonstrated that the ex-pression level of ILK was significantly increased from March to May (early follicle anagen initiation) in both sheep breeds, Chinese Merino and Kazakh sheep, and there were certain differences from June to October between the two breeds. The above results indicated that ILK gene may play key roles in regulating secondary follicle growth.
- Published
- 2012
- Full Text
- View/download PDF
35. [Effect of ginsenoside Rg1 on the spatial learning-memory ability in dementia rats after transplanted with bone marrow mesenchymal stem cells].
- Author
-
Wu W, Yang JQ, and He ZY
- Subjects
- Animals, Dementia therapy, Ginsenosides therapeutic use, Male, Mesenchymal Stem Cell Transplantation, Rats, Rats, Sprague-Dawley, Dementia psychology, Ginsenosides pharmacology, Learning drug effects, Memory drug effects
- Abstract
Objective: To study the effect and mechanism of ginsenoside Rg1 on the spatial learning-memory ability in rats with Alzheimer's disease after transplanted with bone marrow mesenchymal stem cells (BMSCs)., Methods: Using digital randomization table method, seventy-five male SD rats were divided into the bilateral FF transection model group (as the model group: ambi-hippocampal fimbria-fomix transected), the sham-operative control group (the SOC group: receiving the same modeling process as the model group, but without ambi-hippocampal fimbria-fomix transected), the ginsenoside Rg1 treatment group (as the treatment group: Two weeks after modeling ginsenoside Rg1 was peritoneally injected at the dose of 5 mg/kg, once daily for four weeks in total), the BMSCs transplanted treatment group [as the control group: Two weeks after modeling every rat received transplantation of BMSCs (10 microL, 1 x 10(6) cells)], and the ginsenoside Rg1 + BMSCs treatment group (as the combination group: They received both transplantation of BMSCs and peritoneal injection of ginsenoside Rgl). The spatial learning-memory ability of rats was detected by Morris water maze and the escape latency (s) was recorded, mRNA expression of nerve growth factor (NGF) was detected using Real-time PCR., Results: Six weeks after the hippocampal fimbria-fomix (FF) transection, the escape latency o feach medication group was obviously shorter than that of the model group, and the spatial learning-memory ability of dementia rats was somewhat improved. The spatial learning-memory ability of rats in the combination group was (29.95 +/- 2.03) and the mRNA expression level of NGF was (1.13 +/- 0.15), better than those in the BMSCs group (44.36 +/- 1.43, 0.78 +/- 0.09, P<0.05)., Conclusions: Ginsenoside Rg1 could strengthen the spatial learning-memory ability in dementia rats after transplanted with BMSCs. Its mechanism might be possibly correlated with up-regulating mRNA expression of NGF in basal forebrain after BMSCs transplantation.
- Published
- 2011
36. [Free deep inferior epigastric artery perforator flap techniques for the immediate post modified radial mastectomy reconstruction].
- Author
-
Zheng M, Lin HD, Jiang ZC, and Yang JQ
- Subjects
- Adult, Breast Neoplasms pathology, Epigastric Arteries transplantation, Female, Follow-Up Studies, Humans, Middle Aged, Patient Satisfaction statistics & numerical data, Treatment Outcome, Breast Neoplasms surgery, Mammaplasty methods, Mastectomy, Modified Radical methods, Surgical Flaps
- Abstract
Objective: To discuss the feasibility and method of immediate breast reconstruction right after modified radical mastectomy in early breast carcinoma patients., Methods: Deep inferior epigastric artery perforation flaps were immediately applied on patients to reconstruct the breast after the skin-sparing mastectomy. The breasts were shaped after the deep inferior epigastric artery and vein were anastomosed to the thoracodorsal artery and vein., Results: In 10 cases of breast reconstruction by DIEP flaps since 2005, there were completely survival in 8 flaps, distal skin necrosis in 1 flap, adiponecrosis in 1 flap. With the follow-up of 9-28 months, the reconstructed breasts were well-shaped and there were no abdominal complication in dnor sites. Ninety percent patients were satisfied with the results from the good to the best level., Conclusion: Most patients were satisfied with the results of mastectomy reconstruction.
- Published
- 2008
37. [Microenvironment of positive pressure powered air purifying medical protective equipment].
- Author
-
Tian F, Cheng GX, Wang Z, Yang JQ, Yang J, and Liu SJ
- Subjects
- Air analysis, Air Microbiology, Carbon Dioxide analysis, Colony Count, Microbial, Humans, Humidity, Oxygen analysis, Temperature, Ventilation, Occupational Medicine instrumentation, Protective Devices, Respiratory Protective Devices
- Abstract
Objective: To study the filtration efficiency of a positive pressure powered air purifying medical protective equipment and the effect of the flow rate on the microenvironment of the equipment., Methods: The filtration efficiency of high efficiency particulate air (HEPA) filter was measured with the biologic aerosol of simulating virus (Escherichia coli bacteriophage f(2)). The simulation work was done at the walk rate of 4 km/h in summer. The effect of the flow rate on the oxygen content, the carbon dioxide content, the temperature and the humidity of the microenvironment of the equipment was investigated. The clinical experiments were conducted in three appointed hospital for fighting against SARS., Results: The HEPA filter could filtrate 99.99% simulating viruses in the air. When the flow rate ranged from 75 to 125 L/min, the microenvironment parameters of the equipment were: the oxygen content was between 19.6% and 20.1% (the physiological safety limit is more than 14.6%); the carbon dioxide content ranged from 0.43% to 0.57% (the physiological safety limit is less than 1.0%); the temperature was between 32.0 degrees C to 32.2 degrees C; the humidity ranged from 49.7% to 59.4% (the physiological safety limit is the temperature 31 degrees C and the humidity 85% or temperature 38 degrees C and humidity 50%). Each microenvironment parameter met the demand of a healthy person under the normal workload. In the clinical experiments, the doctors wearing the equipment who performed the tracheotomy for a SARS patient in a deep coma were not infected., Conclusion: The medical protective equipment can protect the doctor and nurse in SARS contaminated areas effectively and improve their work conditions.
- Published
- 2006
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