9 results on '"Yan-Jiao, Lu"'
Search Results
2. Association Analysis of Variants of DSCAM and BACE2 With Hirschsprung Disease Susceptibility in Han Chinese and Functional Evaluation in Zebrafish
- Author
-
Yan-Jiao Lu, Wen-Wen Yu, Meng-Meng Cui, Xian-Xian Yu, Huan-Lei Song, Mei-Rong Bai, Wen-Jie Wu, Bei-Lin Gu, Jun Wang, Wei Cai, and Xun Chu
- Subjects
Hirschsprung disease ,DSCAM ,BACE2 ,zebrafish model ,enteric nervous system ,Biology (General) ,QH301-705.5 - Abstract
Hirschsprung disease (HSCR) has a higher incidence in children with Down syndrome (DS), which makes trisomy 21 a predisposing factor to HSCR. DSCAM and BACE2 are close together on the HSCR-associated critical region of chromosome 21. Common variants of DSCAM and rare variants of BACE2 were implicated to be associated with sporadic HSCR. However, the submucosal neuron defect of DS mouse model could not be rescued by normalization of Dscam. We aimed to explore the contribution of DSCAM and BACE2 to the development of the enteric nervous system (ENS) and HSCR susceptibility. We genotyped 133 tag single-nucleotide polymorphisms (SNPs) in DSCAM and BACE2 gene region in 420 HSCR patients and 1,665 controls of Han Chinese. Expression of DSCAM and BACE2 homologs was investigated in the developing gut of zebrafish. Overexpression and knockdown of the homologs were performed in zebrafish to investigate their roles in the development of ENS. Two DSCAM SNPs, rs430255 (PAddtive = 0.0052, OR = 1.36, 95% CI: 1.10–1.68) and rs2837756 (PAddtive = 0.0091, OR = 1.23, 95% CI: 1.05–1.43), showed suggestive association with HSCR risk. Common variants in BACE2 were not associated with HSCR risk. We observed dscama, dscamb, and bace2 expression in the developing gut of zebrafish. Knockdown of dscama, dscamb, and bace2 caused a reduction of enteric neurons in the hindgut of zebrafish. Overexpression of DSCAM and bace2 had no effects on neuron number in the hindgut of zebrafish. Our results suggested that common variation of DSCAM contributed to HSCR risk in Han Chinese. The dysfunction of both dscams and bace2 caused defects in enteric neuron, indicating that DSCAM and BACE2 might play functional roles in the occurrence of HSCR. These novel findings might shed new light on the pathogenesis of HSCR.
- Published
- 2021
- Full Text
- View/download PDF
3. Association of Variants in PLD1, 3p24.1, and 10q11.21 Regions With Hirschsprung’s Disease in Han Chinese Population
- Author
-
Wei-Bo Niu, Mei-Rong Bai, Huan-Lei Song, Yan-Jiao Lu, Wen-Jie Wu, Yi-Ming Gong, Xian-Xian Yu, Zhi-Liang Wei, Wen-Wen Yu, Bei-Lin Gu, Wei Cai, and Xun Chu
- Subjects
association ,Hirschsprung’s disease ,case-control study ,single nucleotide polymorphisms ,Han Chinese population ,Genetics ,QH426-470 - Abstract
Background and Aims: Hirschsprung’s disease (HSCR) is a rare genetically heterogeneous congenital disorder. A recent study based on whole genome sequencing demonstrated that common variants at four novel loci, which contained two intronic variants on CASQ2 and PLD1, and intergenic variants located between SLC4A7 and EOMES at 3p24.1, and between LINC01518 and LOC283028 at 10q11.21, were associated with HSCR susceptibility. To validate these associations with HSCR susceptibility, we performed a case–control study in a Han Chinese sample set.Methods: We selected four previously identified single nucleotide polymorphisms (SNPs) for replication, along with tag SNPs to cover the four associated regions. In total, 61 SNPs were genotyped in 420 HSCR patients and 1,665 healthy controls from the Han Chinese population.Results: None of the 14 tag SNPs in the CASQ2 gene region, including the previously associated rs9428225, showed an association with HSCR. Among the 24 tag SNPs from the SLC4A7-EOMES region at 3p24.1, rs2642925 [odds ratio (OR) = 1.41, 95% confidence interval (95% CI) = 1.10–1.79; PAdditive = 0.007] and the previously associated SNP rs9851320 showed a suggestive association (OR = 1.22, 95% CI = 1.01–1.47; PAdditive = 0.042). A non-synonymous SNP, rs2287579, in PLD1 showed a suggestive association with HSCR susceptibility (OR = 1.71, 95% CI = 1.18–2.46; PAdditive = 0.004). Additionally, the previously associated PLD1 SNP rs12632766 showed a suggestive significance (OR = 1.20, 95% CI = 1.01–1.42, PAdditive = 0.038). In the LINC01518-LOC283028 region at 10q11.21, three SNPs meet the study-wide significance threshold. Rs17153309 was the most associated SNP (OR = 1.60, 95% CI = 1.34–1.90; PAdditive = 1.13 × 10–7). The previously associated SNP rs1414027 also showed significant association (OR = 1.43, 95% CI = 1.20–1.70, PAdditive = 3.92 × 10–5). Two associated SNPs at 10q11.21 (rs1414027 and rs624804) were expression quantitative trait loci in digestive tract tissues from GTEx databases.Conclusions: Our results confirmed that variants of the LINC01518-LOC283028 region were associated with HSCR in the Han Chinese population. Additionally, the susceptibility of SNPs in the LINC01518-LOC283028 region were associated with the expression levels of nearby genes. These results provide new insight into the pathogenesis of HSCR.
- Published
- 2020
- Full Text
- View/download PDF
4. Common variants of NRG1 and ITGB4 confer risk of Hirschsprung disease in Han Chinese population
- Author
-
Zhi-Liang Wei, Xian-Xian Yu, Xun Chu, Wenjie Wu, Bei-Lin Gu, Huan-Lei Song, Mei-Rong Bai, Yi-Ming Gong, Yan-Jiao Lu, and Wei Cai
- Subjects
China ,Neuregulin-1 ,Single-nucleotide polymorphism ,Disease ,Polymorphism, Single Nucleotide ,Pathogenesis ,Neurodevelopmental disorder ,Asian People ,ErbB ,mental disorders ,Genotype ,Humans ,Medicine ,SNP ,Genetic Predisposition to Disease ,Hirschsprung Disease ,Genetic association ,Genetics ,business.industry ,Integrin beta4 ,General Medicine ,medicine.disease ,Case-Control Studies ,Pediatrics, Perinatology and Child Health ,Surgery ,business - Abstract
Background Hirschsprung disease (HSCR) is a neurodevelopmental disorder with a strong genetic component. Common variants of NRG1 contributed to HSCR risk in Asians, and rare variants of ERBB2 and ITGB4 were found to be associated with HSCR. ERBB2 and ITGB4 are partners of Nrg1/ErbB pathway, which is important in HSCR pathogenesis. We aimed to investigate whether common variants in NRG1, ERBB2 and ITGB4 were associated with HSCR in Chinese Han population. Methods We genotype 17 single nucleotide polymorphisms (SNPs) of NRG1, ERBB2 and ITGB4 in 420 HSCR patients and 1665 controls, and performed association analysis. Results We validated associations of two NRG1 SNPs rs7835688 (PAllelic = 2.2 × 10− 20, OR = 2.21, 95%CI = 1.86–2.62) and rs16879552 (PAllelic = 5.6 × 10− 9, OR = 1.57, 95%CI = 1.35–1.83) with risk to HSCR. SNP rs3744000 located 5′ upstream of ITGB4 showed association with HSCR (PAllelic = 2.4 × 10− 3, OR = 1.27, 95%CI = 1.09–1.49). Four SNPs of ERBB2 exhibited no association. Conclusions Our results suggested that common variation of ITGB4 and NRG1 conferred risk to HSCR in Chinese Han population, which further highlighted Nrg-1/ErbB pathway involving in the pathogenesis of HSCR. Level of evidence
- Published
- 2020
5. Evaluation Value and Clinical Significance of Cardiac Troponin Level and Pediatric Sequential Organ Failure Score in the Definition of Sepsis 3.0 in Critically Ill Children
- Author
-
YunDuo Wu, Wenli Shen, Qizheng Wang, Changqiang Cui, Li Zha, Yan Jiao Lu, Rui Liu, Xiaofei Lin, and Hongli Zhu
- Subjects
General Immunology and Microbiology ,Article Subject ,Organ Dysfunction Scores ,Applied Mathematics ,Critical Illness ,General Medicine ,Prognosis ,General Biochemistry, Genetics and Molecular Biology ,Systemic Inflammatory Response Syndrome ,Troponin ,Intensive Care Units ,ROC Curve ,Modeling and Simulation ,Case-Control Studies ,Sepsis ,Creatine Kinase, MB Form ,Humans ,Child ,Retrospective Studies - Abstract
Objective. A case-control study was conducted to explore the value and clinical significance of troponin level and pediatric sequential organ failure score in the evaluation of sepsis 3.0 definition in critically ill children. Methods. 180 children with sepsis who were admitted to the ICU from March 2019 to June 2021 were enrolled in our hospital as the research objects. In addition, 100 children with general infection did not meet the diagnostic criteria of systemic inflammatory response syndrome (SIRS) as controls. The creatine kinase MB (CK-MB) and cardiac troponin I (cTnI) data at the 1st and 24-72 h after admission to pediatric intensive care unit (PICU) were enrolled as the observation indexes of myocardial enzymology. In the meantime, the relevant literature was reviewed to obtain the indicators related to sepsis death. The data of the first examination in the medical history data were enrolled for analysis. According to the definition of sepsis 3.0 in critically ill children, they were assigned into sepsis and nonsepsis group. According to the survival outcome of discharge and 30 days after discharge, the patients were assigned into the death subgroup and survival subgroup and were assigned into the sequential organ failure assessment SOFA score ≥ 2 subgroup and oxygenation index < 200 , mean arterial pressure, and Glasgow coma scale (GCS), and the difference was statistically significant ( P < 0.05 ). The results of COX regression analysis indicated that the variables that were remarkably associated with death from sepsis in children were CK-MB, elevated cTnI levels, and SOFA score ≥ 2 , and serum cTnI and/or CK-MB levels and SOFA score were remarkably higher correlation ( r = 0.453 , P < 0.05 ). In terms of the myocardial enzyme levels in the sepsis group and the nonsepsis group, the levels of CK-MB and (or) cTnI augmented in 121/180 cases (67.22%) in the sepsis group and in 19/100 cases (19.00%) in the nonsepsis group. The levels of CK-MB and (or) cTnI were augmented, and the difference was statistically significant ( P < 0.05 ). The levels of CK-MB and cTnI in the sepsis group at admission to ICU and 24 to 72 hours after admission were remarkably higher compared to the nonsepsis group. The levels of CK-MB and cTnI at 24-72 h were higher compared to ICU. The myocardial enzyme levels of different SOFA scores and survival outcome subgroups in the sepsis group were compared. The subgroup with SFOA score ≥ 2 points had remarkably higher levels of CK-MB and (or) cTnI than the subgroup with P < 0.05 ). Kaplan-Meier method and log-rank test indicated that the survival rates of groups 1 to 4 at 30 days were 33.23%, 78.71%, 40.03%, and 100.00%, respectively. The average survival time and their 95% CI were 12.82 d (10.52~ 16.26 d), 22.34 d (18.76~ 25.81 d), 14.65 d (11.62~ 16.38 d), and 30 d (30.00~ 30.00 d), respectively. Pairwise comparison indicated that the survival time of children in group 1 was the shortest, and that in group 4 was the longest. The results of ROC curve research showed that the CK-MB, cTnI, and SOFA scores and AUC for the combination test were 0.778 (95% CI 0.642–0.914), 0.736 (95% CI 0.602–0.890), 0.848 (95% CI 0.733–0.963), and 0.934 (95% CI 0.854–0.999), respectively. The AUC of combined diagnosis was remarkably higher compared to single factor prediction, and the difference was statistically significant ( P < 0.05 ). Predictive value showed the joint test > SOFA score > CK − MB > cTnI . Conclusion. Troponin level and pediatric SOFA score can be adopted as effective indicators to assess the severity and prognosis of patients with sepsis and can guide the formulation of a reasonable treatment plan.
- Published
- 2022
6. Association of common variation in ADD3 and GPC1 with biliary atresia susceptibility
- Author
-
Zhi-Liang Wei, Ying Zhou, Wei-Bo Niu, Xun Chu, Wenjie Wu, Yi-Ming Gong, Xian-Xian Yu, Wen-Wen Yu, Bei-Lin Gu, Yan-Jiao Lu, Wei Cai, Mei-Rong Bai, and Huan-Lei Song
- Subjects
Genetics ,Aging ,education.field_of_study ,Population ,Haplotype ,Genome-wide association study ,Single-nucleotide polymorphism ,Cell Biology ,Biology ,ADD3 ,Expression quantitative trait loci ,Epistasis ,SNP ,education - Abstract
Biliary atresia (BA) is an idiopathic neonatal cholestatic disease. Recent genome-wide association study (GWAS) revealed that common variation of ADD3, GPC1, ARF6, and EFEMP1 gene was associated with BA susceptibility. We aimed to evaluate the association of these genes with BA in Chinese population. Twenty single nucleotide polymorphisms (SNPs) in these four genes were genotyped in 340 BA patients and 1,665 controls. Three SNPs in ADD3 were significantly associated with BA, and rs17095355 was the top SNP (PAllele = 3.23×10-6). Meta-analysis of published data and current data indicated that rs17095355 was associated with BA susceptibility in Asians and Caucasians. Three associated SNPs were expression quantitative trait loci (eQTL) for ADD3. Two GPC1 SNPs in high linkage disequilibrium (LD) showed nominal association with BA susceptibility (PAllele = 0.03 for rs6707262 and PAllele = 0.04 for rs6750380), and were eQTL of GPC1. Haplotype harboring these two SNPs almost reached the study-wide significance (P = 0.0035). No association for ARF6 and EFEMP1 was found with BA risk in the current population. Our study validated associations of ADD3 and GPC1 SNPs with BA risk in Chinese population and provided evidence of epistatic contributions of genetic factors to BA susceptibility.
- Published
- 2020
7. Common variation of the NSD1 gene is associated with susceptibility to Hirschsprung's disease in Chinese Han population
- Author
-
Mei-Rong Bai, Yan-Jiao Lu, Bei-Lin Gu, Wei Cai, Yi-Ming Gong, Zhi-Liang Wei, Xian-Xian Yu, Huan-Lei Song, Wenjie Wu, and Xun Chu
- Subjects
Nonsynonymous substitution ,Male ,Risk ,China ,Genotype ,Biopsy ,Quantitative Trait Loci ,Single-nucleotide polymorphism ,Biology ,Gene mutation ,Polymorphism, Single Nucleotide ,Linkage Disequilibrium ,03 medical and health sciences ,0302 clinical medicine ,Asian People ,030225 pediatrics ,medicine ,SNP ,Humans ,Genetic Predisposition to Disease ,Hirschsprung Disease ,Hirschsprung's disease ,Alleles ,Genetic association ,Genetics ,Sotos Syndrome ,Sotos syndrome ,Genetic Variation ,Exons ,Histone-Lysine N-Methyltransferase ,medicine.disease ,Pediatrics, Perinatology and Child Health ,Expression quantitative trait loci ,Mutation ,Female ,030217 neurology & neurosurgery - Abstract
Hirschsprung’s disease (HSCR) is the most common congenital cause of intestinal obstruction in children. Sotos syndrome (SoS) is an overgrowth disorder with constipation and sometimes accompanied by HSCR. NSD1 gene mutation is the main cause of SoS. We aimed to investigate association of NSD1 common single nucleotide polymorphisms (SNPs) with HSCR susceptibility in Chinese Han population. We genotyped 15 SNPs encompassing NSD1 gene region in 420 HSCR patients and 1665 controls on Fludigm EP1 platform. Association analysis was performed between cases and controls. Rs244709 was the most associated SNP with HSCR susceptibility of the sample set (PAllelic = 9.69 × 10−5, OR = 1.37, 95% CI: 1.17–1.61). Gender stratification analysis revealed that NSD1 SNPs were associated with HSCR in males, but not in females. The nonsynonymous coding SNP rs28932178 in NSD1 exon 5 represented the most significant signal in males (PAllelic = 6.43 × 10−5, OR = 1.42, 95% CI: 1.20–1.69). The associated SNPs were expression quantitative trait loci (eQTLs) of nearby genes in multiple tissues. NSD1 expression levels were higher in aganglionic colon tissues than ganglionic tissues (P = 3.00 × 10−6). NSD1 variation conferred risk to HSCR in males, indicating SoS and HSCR may share common genetic factors.
- Published
- 2019
8. Study on alantolactone-inducStudy on alantolactone-induced differentiation of mesenchymal stem cells into vascular cellsed differentiation of mesenchymal stem cells into vascular cells
- Author
-
Yan-Jiao Lu, Qiong Lu, Ruo-Ke Su, Gang Wang, and Rui Tan
- Subjects
lcsh:R ,rMSCs ,Stably transformed cell line ,lcsh:Medicine ,Angiogenesis ,α-SMA ,Alanlactone ,lcsh:RZ409.7-999 ,VEGF ,lcsh:Miscellaneous systems and treatments - Abstract
To promote efficient screening of active angiogenic drugs from traditional medicines, we constructed a human embryonic kidney-293 cell model using vascular endothelial growth factor (VEGF) gene promoter as the drug target. In this model, VEGF gene promoter may regulate the expression of the luciferase reporter gene by responding to the stimulation of drug molecules. This cell model allows rapid and efficient screening of vascular-inducing active components from several drug monomer molecules. Furthermore, we used rat bone marrow mesenchymal stem cells (rMSCs) to conduct a preliminary study on the activity of alantolactone. Using simvastatin as a positive control, we investigated the effects of alantolactone on the expression of vascular-related cell marker molecules such as VEGF and α-smooth muscle actin (α-SMA) in rMSCs. According to our results, 0.1, 1, 3 and 5 μM of alantolactone upregulated the transcriptional luciferase gene activity of VEGF promoter, and a significant difference from that in the control group was observed. Among them, 3μM of alantolactone showed the better effect than that of 3 μM of simvastatin (P = 0.036) and other concentrations of alantolactone and simvastatin showed similar effects. Compared with that in the control group, rMSCs induced with 1μM alantolactone for 3 days showed a significant increase in the relative mRNA expressions of VEGF and α-SMA genes. However, these effect of 5 μM alantolactone were weaker than those of 5 μM simvastatin (P < 0.05); rMSCs treated with 1 μM alantolactone for 3 days showed brighter green fluorescence (FITC marker) of α-SMA and VEGF in situ expression than that observed in the control group and similar fluorescence intensity than that of simvastatin group in an immunoradiometric assay. The above results demonstrate the reliability of the highly efficient system for screening of active drug molecules and confirmed the vascular induction function of alantolactone at the gene and protein levels.
- Published
- 2018
9. Association of common variation in
- Author
-
Mei-Rong, Bai, Wei-Bo, Niu, Ying, Zhou, Yi-Ming, Gong, Yan-Jiao, Lu, Xian-Xian, Yu, Zhi-Liang, Wei, Wenjie, Wu, Huan-Lei, Song, Wen-Wen, Yu, Bei-Lin, Gu, Wei, Cai, and Xun, Chu
- Subjects
Male ,Genotype ,Quantitative Trait Loci ,association ,Infant ,biliary atresia ,DNA ,ADD3 ,Polymorphism, Single Nucleotide ,Glypicans ,GPC1 ,single nucleotide polymorphism ,Case-Control Studies ,Humans ,Calmodulin-Binding Proteins ,Female ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Research Paper - Abstract
Biliary atresia (BA) is an idiopathic neonatal cholestatic disease. Recent genome-wide association study (GWAS) revealed that common variation of ADD3, GPC1, ARF6, and EFEMP1 gene was associated with BA susceptibility. We aimed to evaluate the association of these genes with BA in Chinese population. Twenty single nucleotide polymorphisms (SNPs) in these four genes were genotyped in 340 BA patients and 1,665 controls. Three SNPs in ADD3 were significantly associated with BA, and rs17095355 was the top SNP (PAllele = 3.23×10-6). Meta-analysis of published data and current data indicated that rs17095355 was associated with BA susceptibility in Asians and Caucasians. Three associated SNPs were expression quantitative trait loci (eQTL) for ADD3. Two GPC1 SNPs in high linkage disequilibrium (LD) showed nominal association with BA susceptibility (PAllele = 0.03 for rs6707262 and PAllele = 0.04 for rs6750380), and were eQTL of GPC1. Haplotype harboring these two SNPs almost reached the study-wide significance (P = 0.0035). No association for ARF6 and EFEMP1 was found with BA risk in the current population. Our study validated associations of ADD3 and GPC1 SNPs with BA risk in Chinese population and provided evidence of epistatic contributions of genetic factors to BA susceptibility.
- Published
- 2019
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.