31 results on '"Ya-Fu Zhou"'
Search Results
2. Synthesis, crystal structure and Hirshfeld surface analysis of N-(6-acetyl-1-nitronaphthalen-2-yl)acetamide
- Author
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Xin-Wei Shi, Shao-Jun Zheng, Qiang-Qiang Lu, Gen Li, and Ya-fu Zhou
- Subjects
crystal structure ,naphthalene ring ,hydrogen bonding ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
The title compound, C14H12N2O4, was obtained from 2-acetyl-6-aminonaphthalene through two-step reactions of acetylation and nitration. The molecule comprises the naphthalene ring system consisting of functional systems bearing a acetyl group (C-2), a nitro group (C-5), and an acetylamino group (C-6). In the crystal, the molecules are assembled into two-dimensional sheet-like structures by intermolecular N—H...O and C—H...O hydrogen-bonding interactions. Hirshfeld surface analysis illustrates that the most important contributions to the crystal packing are from O...H/H...O (43.7%), H...H (31.0%), and C...H/H...C (8.5%) contacts.
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- 2024
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3. Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
- Author
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Yi Shi, Dan-Dan Zhang, Ji-Bin Liu, Xiao-Li Yang, Rui Xin, Cheng-You Jia, Hui-Min Wang, Gai-Xia Lu, Pei-Yao Wang, Yu Liu, Zi-Jin Li, Jing Deng, Qin-Lu Lin, Liang Ma, Shan-Shan Feng, Xiao-Qi Chen, Xiang-Min Zheng, Ya-Fu Zhou, Yong-Jun Hu, Hua-Qun Yin, Lin-Lin Tian, Li-Peng Gu, Zhong-Wei Lv, Fei Yu, Wen Li, Yu-Shui Ma, and Fu Da
- Subjects
HCC ,ceRNA network ,DLEU2L/TAOK1 axis ,prognosis ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characteristics of the ceRNA network in HCC were still unclear. In this study, we aimed to clarify a phosphatase and tensin homolog (PTEN)-related ceRNA regulatory network and identify potential prognostic markers associated with HCC. The expression profiles of three RNAs (long non-coding RNAs [lncRNAs], microRNAs [miRNAs], and mRNAs) were extracted from The Cancer Genome Atlas (TCGA) database. The DLEU2L-hsa-miR-100-5p/ hsa-miR-99a-5p-TAOK1 ceRNA network related to the prognosis of HCC was obtained by performing bioinformatics analysis. Importantly, we identified the DLEU2L/TAOK1 axis in the ceRNA by using correlation analysis, and it appeared to become a clinical prognostic model by Cox regression analysis. Furthermore, methylation analyses suggested that the abnormal upregulation of the DLEU2L/TAOK1 axis likely resulted from hypomethylation, and immune infiltration analysis showed that the DLEU2L/TAOK1 axis may have an impact on the changes in the tumor immune microenvironment and the development of HCC. In summary, the current study constructing a ceRNA-based DLEU2L/TAOK1 axis might be a novel important prognostic factor associated with the diagnosis and prognosis of HCC.
- Published
- 2021
- Full Text
- View/download PDF
4. The complete chloroplast genome of Carex agglomerata C. B. Clarke (Cyperaceae), an endemic species from China
- Author
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Lu-Lu Xun, Fang-Bin Ding, Chen Chen, Pei-Liang Liu, Yuan Lu, Ya-Fu Zhou, Ya-Wei Zhang, and Si-Feng Li
- Subjects
carex agglomerata ,chloroplast genome phylogenetic analysis sequencing ,Genetics ,QH426-470 - Abstract
Carex agglomerata C. B. Clarke is a sedge with excellent ornamental characters, it is an important ecosystem stabilizer. Here we report the complete chloroplast genome of C. agglomerata to provide a foundation for further phylogenetic studies on the Cyperaceae. The chloroplast (cp) genome is 184,157 bp in size and consists of a large single-copy (LSC) region 106,654 bp in length, a small single-copy (SSC) region of 36,099 bp, two inverted repeats (IR) regions each 20,702 bp. The total GC content of the cp genome is 33.9% with the LSC, SSC, and IR regions 32, 32.5, and 42.9%, respectively. The cp genome contains 128 genes, including 80 protein-coding, 40 tRNA, and eight rRNA genes. The phylogenetic analysis showed C. agglomerata is in a clade with Carex neurocarpa Maxim and Carex siderosticta Hance. This study provides a basis for further phylogenetic studies of Carex.
- Published
- 2021
- Full Text
- View/download PDF
5. A Method for Battery Health Estimation Based on Charging Time Segment
- Author
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Shao-Xun Liu, Ya-Fu Zhou, Yan-Liang Liu, Jing Lian, and Li-Jian Huang
- Subjects
health indicator ,charging time segment ,improved cuckoo search ,capacity attenuation ,Technology - Abstract
The problem of low accuracy and low convenience in the existing state of health (SOH) estimation method for vehicle lithium-ion batteries has become one of the important problems in the electric vehicle field. This paper proposes an improved cuckoo search particle filter (ICS-PF) algorithm based on a charging time segment from equal voltage data to estimate battery health status. Appropriate voltage ranges of charging time segments are selected according to the battery charging law, and in the meantime, the charging time segments are collected as a health indicator to establish the corresponding relationship with battery capacity attenuation value. An improved cuckoo search particle filter algorithm based on the traditional particle filter (PF) and cuckoo search (CS) algorithm is proposed by enhancing the search step size and discovery probability to estimate the capacity attenuation. The estimation result shows that this method is superior to the traditional particle filter and cuckoo search particle filter (CS-PF) method, as the maximum estimation error is less than 2%.
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- 2021
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6. Crystal structure and Hirshfeld analysis of (1aS,3aR,4aS,5aR)-15-acetoxylinden-7(11),8-trieno-12,8-lactone
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Qiang-Qiang Lu, Xin-Wei Shi, Ya-Fu Zhou, Xin-Ai Cui, and Hong Wang
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General Materials Science ,General Chemistry ,Condensed Matter Physics - Abstract
The structure of the title compound, C17H20O4 [systematic name: (1aS,3aR,4aS,5aR)-15-(acetoxy)linden-7(11),8-trieno-12,8-lactone or (4aR,5S,5aR,6aS,6bR)-5-(acetoxymethyl)-4a,5,5a,6,6a,6b-hexahydro-3,6b-dimethylcyclopropa[2,3]indeno[5,6-b]furan-2(4H)-one, ent-chloranthalactone C], a natural product isolated from the whole plant Chloranthus japonicus Sieb., is a typical lindenane-type sesquiterpenoid. The molecule comprises a bicyclo[3.1.0]hexane ring (A/B system) bearing an acetoxymethyl (C-4) group, a bicyclo[4.3.0]nonane ring (B/C system) containing a double bond (C-8/9) and a chiral quaternary carbon (C-10), and a 7(11)-en-12,8-olide structural moiety on the cyclohexan-8-ene (C ring). In the tetracyclic skeleton, the 1,3-cyclopropane ring has a β-configuration, and atoms H-5 and H3-14 have α- and β-orientations, respectively. In the crystal, the molecules are assembled into a two-dimensional network by weak O...H/H...O interactions. Hirshfeld surface analysis illustrates that the greatest contributions are from H...H (55.2%), O...H/H...O (34.6%) and C...H/H...C (8.9%) contacts.
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- 2022
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7. A control approach for alternating current disturbance signal of fuel cells based on MOSFET high‐speed switch
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Q. C. Dong, Jie Lian, Lijian Huang, Lin Hui Li, and Ya Fu Zhou
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Materials science ,Disturbance (geology) ,Renewable Energy, Sustainability and the Environment ,law ,Control theory ,MOSFET ,Energy Engineering and Power Technology ,Fuel cells ,Control circuit ,Alternating current ,Signal ,law.invention - Published
- 2021
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8. Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma
- Author
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Shan-Shan Feng, Yu-Shui Ma, Gai-Xia Lu, Fei Yu, Rui Xin, Zi-Jin Li, Liang Ma, Xiang-Min Zheng, Li-Peng Gu, Hua Qun Yin, Pei-Yao Wang, Wen Li, Lin-Lin Tian, Yi Shi, Yu Liu, Jing Deng, Dan-Dan Zhang, Fu Da, Cheng-You Jia, Ya-Fu Zhou, Xiao-Li Yang, Yong-Jun Hu, Xiao Qi Chen, Qinlu Lin, Zhongwei Lv, Ji-Bin Liu, and Hui-Min Wang
- Subjects
0301 basic medicine ,ceRNA network ,DLEU2L/TAOK1 axis ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Drug Discovery ,microRNA ,medicine ,PTEN ,Tensin ,HCC ,biology ,Competing endogenous RNA ,lcsh:RM1-950 ,RNA ,Methylation ,medicine.disease ,030104 developmental biology ,lcsh:Therapeutics. Pharmacology ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,biology.protein ,Cancer research ,Molecular Medicine ,Original Article ,prognosis - Abstract
Hepatocellular carcinoma (HCC) is one of the deadliest malignant tumors that are harmful to human health. Increasing evidence has underscored the critical role of the competitive endogenous RNA (ceRNA) regulatory networks among various human cancers. However, the complexity and behavior characteristics of the ceRNA network in HCC were still unclear. In this study, we aimed to clarify a phosphatase and tensin homolog (PTEN)-related ceRNA regulatory network and identify potential prognostic markers associated with HCC. The expression profiles of three RNAs (long non-coding RNAs [lncRNAs], microRNAs [miRNAs], and mRNAs) were extracted from The Cancer Genome Atlas (TCGA) database. The DLEU2L-hsa-miR-100-5p/ hsa-miR-99a-5p-TAOK1 ceRNA network related to the prognosis of HCC was obtained by performing bioinformatics analysis. Importantly, we identified the DLEU2L/TAOK1 axis in the ceRNA by using correlation analysis, and it appeared to become a clinical prognostic model by Cox regression analysis. Furthermore, methylation analyses suggested that the abnormal upregulation of the DLEU2L/TAOK1 axis likely resulted from hypomethylation, and immune infiltration analysis showed that the DLEU2L/TAOK1 axis may have an impact on the changes in the tumor immune microenvironment and the development of HCC. In summary, the current study constructing a ceRNA-based DLEU2L/TAOK1 axis might be a novel important prognostic factor associated with the diagnosis and prognosis of HCC., Graphical Abstract, Shi et al. provide evidence that a ceRNA-based DLEU2L/TAOK1 axis has an impact on changes in the tumor immune microenvironment and might be a novel important prognostic factor associated with the diagnosis and prognosis of HCC.
- Published
- 2021
9. A Long‐term Energy Management Strategy for Fuel Cell Electric Vehicles Using Reinforcement Learning
- Author
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Ya Fu Zhou, Xinhan Sun, Lin Hui Li, Jie Lian, and Lijian Huang
- Subjects
Renewable Energy, Sustainability and the Environment ,Computer science ,Energy management ,Service lifetime ,Energy Engineering and Power Technology ,Reinforcement learning ,Fuel cells ,Automotive engineering ,Term (time) - Published
- 2020
- Full Text
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10. A Method for Battery Health Estimation Based on Charging Time Segment
- Author
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Ya-Fu Zhou, Yan-Liang Liu, Liu Shaoxun, Lijian Huang, and Jing Lian
- Subjects
Battery (electricity) ,health indicator ,charging time segment ,improved cuckoo search ,capacity attenuation ,Technology ,Control and Optimization ,business.product_category ,State of health ,Computer science ,020209 energy ,Energy Engineering and Power Technology ,02 engineering and technology ,Field (computer science) ,Control theory ,Electric vehicle ,0202 electrical engineering, electronic engineering, information engineering ,Electrical and Electronic Engineering ,Cuckoo search ,Engineering (miscellaneous) ,Renewable Energy, Sustainability and the Environment ,Attenuation ,020208 electrical & electronic engineering ,Building and Construction ,Particle filter ,business ,Energy (miscellaneous) ,Voltage - Abstract
The problem of low accuracy and low convenience in the existing state of health (SOH) estimation method for vehicle lithium-ion batteries has become one of the important problems in the electric vehicle field. This paper proposes an improved cuckoo search particle filter (ICS-PF) algorithm based on a charging time segment from equal voltage data to estimate battery health status. Appropriate voltage ranges of charging time segments are selected according to the battery charging law, and in the meantime, the charging time segments are collected as a health indicator to establish the corresponding relationship with battery capacity attenuation value. An improved cuckoo search particle filter algorithm based on the traditional particle filter (PF) and cuckoo search (CS) algorithm is proposed by enhancing the search step size and discovery probability to estimate the capacity attenuation. The estimation result shows that this method is superior to the traditional particle filter and cuckoo search particle filter (CS-PF) method, as the maximum estimation error is less than 2%.
- Published
- 2021
- Full Text
- View/download PDF
11. The complete chloroplast genome of Carex agglomerata C. B. Clarke (Cyperaceae), an endemic species from China
- Author
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Pei-Liang Liu, Lu-Lu Xun, Yuan Lu, Ya-Fu Zhou, Chen Chen, Si-Feng Li, Fang-Bin Ding, and Ya-Wei Zhang
- Subjects
Carex siderosticta ,Carex ,biology ,Phylogenetic tree ,Inverted repeat ,Botany ,Genetics ,Cyperaceae ,Ribosomal RNA ,biology.organism_classification ,Molecular Biology ,Genome ,GC-content - Abstract
Carex agglomerata C. B. Clarke is a sedge with excellent ornamental characters, it is an important ecosystem stabilizer. Here we report the complete chloroplast genome of C. agglomerata to provide a foundation for further phylogenetic studies on the Cyperaceae. The chloroplast (cp) genome is 184,157 bp in size and consists of a large single-copy (LSC) region 106,654 bp in length, a small single-copy (SSC) region of 36,099 bp, two inverted repeats (IR) regions each 20,702 bp. The total GC content of the cp genome is 33.9% with the LSC, SSC, and IR regions 32, 32.5, and 42.9%, respectively. The cp genome contains 128 genes, including 80 protein-coding, 40 tRNA, and eight rRNA genes. The phylogenetic analysis showed C. agglomerata is in a clade with Carex neurocarpa Maxim and Carex siderosticta Hance. This study provides a basis for further phylogenetic studies of Carex.
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- 2021
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- View/download PDF
12. The complete chloroplast genome sequence of
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Yu Chao Wang, Ya Fu Zhou, Shao Li Mao, and Xi Lu Ni
- Subjects
0106 biological sciences ,0301 basic medicine ,Whole genome sequencing ,endemic species ,Biology ,Fargesia qinlingensis ,01 natural sciences ,Genome ,010601 ecology ,Chloroplast ,03 medical and health sciences ,030104 developmental biology ,Evolutionary biology ,Genetics ,Poaceae ,chloroplast genome ,Endemism ,Molecular Biology ,Mitogenome Announcement ,Illumina dye sequencing ,Research Article - Abstract
The complete chloroplast genome of Fargesia qinlingensis (Poaceae) has been reconstructed from the whole-genome Illumina sequencing data. The complete chloroplast genome sequence of F. qinlingensis obtained in this study was 139,640 bp in length, with a large single copy (LSC) region of 83,220 bp, a small single copy (SSC) region of 12,826 bp, separated by two inverted repeat (IR) regions of 21,797 bp each. The GC content was 38.9%, and in the LSC, SSC, and IR regions were 37.0%, 33.2%, and 44.2%, respectively. A total of 130 genes were annotated, including 83 protein-coding genes (PCGs), 39 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The result of the phylogenetic analysis showed that F. qinlingensis was more closely related to the species of F. denudata.
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- 2021
13. Complete mitochondrial genome of
- Author
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Zhong Ying Qiu, Yang Li, Ya Fu Zhou, Qian Li, and Shao Li Mao
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0106 biological sciences ,0301 basic medicine ,Mitochondrial DNA ,Meconematinae ,biology ,Orthoptera ,Tettigoniidae ,phylogeny ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Xiphidiopsis ,03 medical and health sciences ,030104 developmental biology ,Xiphidiopsis (Xiphidiopsis) gurneyi ,mitochondrial genome ,Evolutionary biology ,Phylogenetics ,Genetics ,Molecular Biology ,Mitogenome Announcement ,Research Article - Abstract
Xiphidiopsis (Xiphidiopsis) gurneyi belongs to Meconematinae. The complete mitochondrial genome of X. (X.) gurneyi was sequenced by the next-generation sequencing (NGS) technology. The total length of the mitogenome was 16,225 bp and contains the typical gene arrangement, base composition, codon usage found in Meconematinae species. Phylogenetic tree was constructed based on concatenated datasets of PCGs and rRNAs of X. (X.) gurneyi and 19 Tettigoniidae species to assess their phylogenic relationship. Phylogenetic analysis showed that X. (X.) gurneyi was more closely related to the genus of Xizicus.
- Published
- 2021
14. Characterization of the mitochondrial genome of Alloxiphidiopsis emarginata (Orthoptera, Tettigoniidae, Meconematinae)
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Yuan Lu, Shao Li Mao, Ya Fu Zhou, and Lu Lu Xun
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0106 biological sciences ,0301 basic medicine ,Genetics ,Mitochondrial DNA ,meconematinae ,Phylogenetic tree ,Orthoptera ,Biology ,phylogeny ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Stop codon ,03 medical and health sciences ,030104 developmental biology ,mitochondrial genome ,Phylogenetics ,Codon usage bias ,Alloxiphidiopsis emarginata ,Meconematinae ,Molecular Biology ,Gene ,Mitogenome Announcement ,Research Article - Abstract
The length of Alloxiphidiopsis emarginata complete mitogenome was 16,207 bp and contained the typical gene arrangement, base composition, codon usage found in other related species. The overall base composition exhibited obvious anti-G (10.6%) and AT bias (71.6%). The initiation codons of all PCGs were typical ATN (ATA/ATG/ATT), and the termination codons were TAA, TAG, or incomplete stop codon T. All tRNAs could be folded into typical cloverleaf secondary structures, except tRNASer (AGN). Phylogenetic analyses showed that A. emarginata was closer with Xizicus howardi.
- Published
- 2019
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15. Research and design of doubly salient permanent magnet motor for hybrid electric vehicle based on the NdFeB permanent magnet material
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Ya Fu Zhou, Jing Lian, Linhui Li, Chang Jing, and M. Mi
- Subjects
business.product_category ,Materials science ,Electropermanent magnet ,Rotor (electric) ,Mechanical Engineering ,Mechanical engineering ,Permanent magnet synchronous generator ,Condensed Matter Physics ,Finite element method ,law.invention ,Quantitative Biology::Subcellular Processes ,Neodymium magnet ,Nuclear magnetic resonance ,Mechanics of Materials ,law ,Magnet ,Electric vehicle ,General Materials Science ,business ,Hybrid vehicle - Abstract
The performance of hybrid electric vehicle motor directly affects its power performance and fuel economy. The high performance sintered NdFeB permanent magnet material is chosen as the core material of the hybrid vehicle motor for the design of the permanent magnet in this paper, and its size is also determined. A doubly salient permanent magnet motor is proposed here on the basis of the selected NdFeB permanent magnet material, and its structure size is designed. The finite element numerical calculation is carried out for the motor in particular rotor position angle on the basis of the field quantity to obtain the magnetic field distribution law in several typical rotor positions and the static characterise parameters of the motor are further obtained. Final, inspect the performance of the prototype objectively based on the bench experiment of the designed physical prototype, and the prototype experiment and finite element results both proved that the designed doubly salient permanent magnet moto...
- Published
- 2015
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16. Leaf-shape remodeling: programmed cell death in fistular leaves ofAllium fistulosum
- Author
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Wenzhe Liu, Feng-Hua Wang, Hui Su, Xi-Lu Ni, and Ya-Fu Zhou
- Subjects
Programmed cell death ,DNA, Plant ,Physiology ,Apoptosis ,DNA Fragmentation ,Plant Science ,Biology ,Allium ,Aerenchyma formation ,Aerenchyma ,food ,Cell Wall ,Organelle ,Genetics ,Leaf formation ,Cell Nucleus ,Cell Death ,food and beverages ,Cell Biology ,General Medicine ,food.food ,Cell biology ,Plant Leaves ,Biochemistry ,Allium fistulosum ,Cytoplasm ,Vacuoles ,Ultrastructure - Abstract
Some species of Allium in Liliaceae have fistular leaves. The fistular lamina of Allium fistulosum undergoes a process from solid to hollow during development. The aims were to reveal the process of fistular leaf formation involved in programmed cell death (PCD) and to compare the cytological events in the execution of cell death to those in the unusual leaf perforations or plant aerenchyma formation. In this study, light and transmission electron microscopy were used to characterize the development of fistular leaves and cytological events. Terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) assays and gel electrophoresis were used to determine nuclear DNA cleavage during the PCD. The cavity arises in the leaf blade by degradation of specialized cells, the designated pre-cavity cells, in the center of the leaves. Nuclei of cells within the pre-cavity site become TUNEL-positive, indicating that DNA cleavage is an early event. Gel electrophoresis revealed that DNA internucleosomal cleavage occurred resulting in a characteristic DNA ladder. Ultrastructural analysis of cells at the different stages showed disrupted vacuoles, misshapen nuclei with condensed chromatin, degraded cytoplasm and organelles and emergence of secondary vacuoles. The cell walls degraded last, and residue of degraded cell walls aggregated together. These results revealed that PCD plays a critical role in the development of A. fistulosum fistular leaves. The continuous cavity in A. fistulosum leaves resemble the aerenchyma in the pith of some gramineous plants to improve gas exchange.
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- 2014
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17. Programmed cell death: A mechanism for the lysigenous formation of secretory cavities in leaves of Dictamnus dasycarpus
- Author
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Shao-Li Mao, Si-Feng Li, Bin Li, Wen-Zhe Liu, Xi-Lu Ni, and Ya-Fu Zhou
- Subjects
Programmed cell death ,Lysis ,DNA, Plant ,Cell ,Apoptosis ,DNA Fragmentation ,Plant Science ,Vacuole ,Biology ,Cell wall ,chemistry.chemical_compound ,Cell Wall ,Plant Cells ,Oils, Volatile ,Genetics ,medicine ,Plastids ,DAPI ,DNA Cleavage ,Cell Nucleus ,Dictamnus ,Cell Differentiation ,General Medicine ,Mitochondria ,Chromatin ,Cell biology ,Plant Leaves ,medicine.anatomical_structure ,chemistry ,Vacuoles ,DNA fragmentation ,Agronomy and Crop Science - Abstract
The formation of secretory cavities in Rutaceae has been the subject of great interest. In this study, cytological events that are involved in the lysigenous formation of the secretory cavities in the leaves of Dictamnus dasycarpus are characterized by an interesting pattern of programmed cell death (PCD). During the developmental process, clusters of cells from a single protoepidermal cell embark on different trajectories and undergo different cell death fates: the cell walls of the secretory cells have characteristics of thinning or complete breakdown, while the sheath cells present a predominantly thick-walled feature. A DAPI assay shows deformed nuclei that are further confirmed to be TUNEL-positive. Gel electrophoresis indicates that DNA cleavage is random and does not result in ladder-like DNA fragmentation. Ultrastructurally, several remarkable features of PCD have been determined, such as misshapen nuclei with condensed chromatin and a significantly diffused membrane, degenerated mitochondria and plastids with disturbed membrane systems, multivesicular bodies, plastolysomes, vacuole disruption and lysis of the center secretory cell. Cytological evidence and Nile red stains exhibit abundant essential oils accumulated in degenerated outer secretory cells after the dissolution of the center secretory cell. In addition, explanations of taxonomic importance and the relationship between PCD and oil droplet accumulation in the secretory cavities are also discussed.
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- 2014
- Full Text
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18. The complete chloroplast genome sequence of Abies chensiensis (Pinaceae: Abietoideae), an endangered species endemic to China
- Author
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Si-Feng Li, Weimin Li, Hao Chen, Ya-Fu Zhou, Guoqing Bai, Chen Chen, and Bin Li
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0301 basic medicine ,Whole genome sequencing ,Abies chensiensis ,biology ,Illumina sequencing ,Endangered species ,Phylogenetic study ,biology.organism_classification ,Genome ,MITObim ,Chloroplast ,03 medical and health sciences ,030104 developmental biology ,Evolutionary biology ,Pinaceae ,Genetics ,chloroplast genome ,Molecular Biology ,Mitogenome Announcement ,Illumina dye sequencing ,Research Article - Abstract
Chloroplast (cp) genome sequences became a widely used tool for evolutionary and phylogenetic studies in plants. Abies chensiensis (Pinaceae: Abietoideae) is an endangered species endemic to China. To understand its evolutionary characteristics, the complete chloroplast genome of the A. chensiensis has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 121,784 bp in length and without a typical quadripartite structure due to the loss of IR region. The total GC content of whole genome sequence is 38.3%. The chloroplast genome encodes 109 genes, including 75 protein-coding genes, 30 transfer RNA genes and four ribosomal RNA genes. Among them, 35 genes involved in photosynthesis, while 58 genes involved in self-replication. The Maximum-Likelihood phylogenetic analysis showed a strong sister relationship with A. nephrolepis and A. koreana in Abietoideae. Our findings provide fundamental information for further evolutionary and phylogenetic researches of Abietoideae.
- Published
- 2018
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19. The complete chloroplast genome sequence of Echinocodon Lobophyllus (Campanulaceae) revealed by next-generation sequencing and phylogenetic implication
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Yu Chao Wang, Shao Li Mao, Ya Fu Zhou, and Chen Chen
- Subjects
0301 basic medicine ,Whole genome sequencing ,Genetics ,Campanulaceae ,Echinocodon lobophyllus ,biology ,Phylogenetic tree ,Inverted repeat ,phylogenetic relationship ,Ribosomal RNA ,biology.organism_classification ,Genome ,Endangered species ,DNA sequencing ,03 medical and health sciences ,030104 developmental biology ,chloroplast genome ,Molecular Biology ,Gene ,Mitogenome Announcement ,Research Article - Abstract
The complete chloroplast genome sequence of Echinocodon lobophyllus was determined by Illumina pair-end sequencing. The results showed that the complete plastid genome was 169,419 bp in length, containing a large single copy (LSC) of 85,599 bp and a small single copy (SSC) of 8054 bp, which were separated by a pair of 37,883 bp inverted repeats (IRs). A total of 109 unique genes were annotated, including 75 protein coding genes, 30 tRNA genes, and 4 rRNA genes. Among these genes, 16 genes contained one or two introns. The overall GC contents of the plastid genome were 38.4%. A maximum likelihood phylogenetic analysis showed that E. lobophyllus and Codonopsis minima formed one clade at the base of the phylogenetic tree of Campanulaceae with a high support value.
- Published
- 2018
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20. Ontogenesis of trichome-like cavities in Dictamnus dasycarpus
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Ya-Fu Zhou, Hong-Yong Shi, and Wen-Zhe Liu
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Programmed cell death ,Ecology ,Plant Science ,Vacuole ,Biology ,Trichome ,Chromatin ,law.invention ,Cell biology ,law ,Cytoplasm ,Ultrastructure ,Electron microscope ,Plastid ,Ecology, Evolution, Behavior and Systematics - Abstract
The ontogeny of a special type of glandular hairs, namely the trichome-like cavities in Dictamnus dasycarpus , characterized by many morphological similarities to non-glandular hairs, capitate glandular hairs, and secretory cavities, was studied using light and electron microscopy. These trichome-like cavities originate from a single, initial epidermal cell that undergoes a periclinal division, with one cell developing into the internal cells and the other into the outer, epidermal cells. A beak-shaped apex is formed on the head of the trichome-like cavity. The histochemical test shows that the trichome-like cavities are important sites for lipid production. By ultrastructural analysis it becomes evident that formation of these trichome-like cavities starts with a disorganization of the cytoplasm that is accompanied by formation of odd shaped nuclei with condensed chromatin. The process continues bringing about plasmolytic processes, and disintegration of the plasma membrane system follows leading finally to autolysis, when mitochondria and degenerated plastids with disorganized membrane systems are engulfed by vacuoles, multivesicular bodies, and double-membranous autophagosomes within the vacuoles. A strong structural twist and swelling of the internal cell walls ultimately leads to complete breakdown of the structures. Nuclei of the inner internal cells within the trichome-like cavity become TUNEL-positive and DAPI-negative first; later this is detected also in the outer internal cells, indicating a centrifugal nuclear degradation process. On the basis of this work, it can be assumed that the lysigenous formation of the trichome-like cavity is a typical programmed cell death process.
- Published
- 2012
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21. Design of on-Line Detection System for Vehicle Rear Axle Based on Vibration Theory
- Author
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Ya Fu Zhou, Jing Lian, Lin Hui Li, and Xin Han Sun
- Subjects
Vibration ,Engineering ,Axle ,Quality (physics) ,business.industry ,Control system ,Line (geometry) ,General Medicine ,business ,Axle track ,Automotive engineering ,Vibration theory of olfaction - Abstract
It is important to detect the vehicle rear axle on-line during production process. To realize the quality detection of the rear axle, vibration diagnosis method is adopted to analyze the vibration characteristics of the rear axle and calculate characteristic frequency. The on-line detection control system of vehicle rear axle quality is designed by extracting characteristic parameters of correctly reflecting rear axle running state and applying PLC system. The system has been operated stably, reliably and efficiently through the test. It has a practical significance.
- Published
- 2011
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22. Development of Automotive Electronics HIL Simulation Experimental Platform
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Xiao Yong Shen, Ya Fu Zhou, Teng Ma, and Jing Lian
- Subjects
Engineering ,SIMPLE (military communications protocol) ,Automatic transmission ,business.industry ,media_common.quotation_subject ,Hardware-in-the-loop simulation ,System hardware ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,General Medicine ,Automotive electronics ,Automotive engineering ,law.invention ,Debugging ,law ,Control system ,Embedded system ,business ,MATLAB ,computer ,media_common ,computer.programming_language - Abstract
This paper presents a low-cost, simple and reliable solution for automotive electronics Hardware-In-Loop (HIL) simulation, taking Jetta AT1.6 car as object, designs and develops automotive electronics HIL simulation platform. Firstly, the overall structure of the platform is designed; secondly, system hardware platform is developed and built using Protel DXP; then, HIL simulation models of ABS (Anti-lock Braking System), engine and automatic transmission are built using Matlab/Simulink and develop automotive electronics HIL simulation platform; finally, carry on the experiment and the results show that the designed HIL simulation experimental platform is good. The platform has widespread applicability in the teaching experiments and the aspects of developing, debugging and testing of automotive electronics control systems.
- Published
- 2010
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23. Laticiferous canal formation in fruits of Decaisnea fargesii: a programmed cell death process?
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Wen-Zhe Liu and Ya-Fu Zhou
- Subjects
Programmed cell death ,DNA, Plant ,Latex ,Cell ,Plant Science ,Vacuole ,DNA Fragmentation ,Biology ,Cytoplasmic Granules ,Plant Epidermis ,Cell wall ,Magnoliopsida ,Cell Wall ,otorhinolaryngologic diseases ,medicine ,Autophagy ,In Situ Nick-End Labeling ,Plastid ,Cell Nucleus ,Secretory Pathway ,Staining and Labeling ,Granule (cell biology) ,Cell Membrane ,Cell Biology ,General Medicine ,Cell biology ,Microscopy, Electron ,medicine.anatomical_structure ,Cytoplasm ,Fruit ,Vacuoles ,Ultrastructure - Abstract
Programmed cell death (PCD), a topic of abiding interest, remodels plants at the cell, tissue, and organ levels involving various developmental processes of plants. The aim of this study is to provide a morphological characterization of evidence of PCD involvement in the laticiferous canal formation in fruit of Decaisnea fargesii. Several ultrastructural features of PCD have been observed including disintegration of vacuole and plasma membranes, cell wall degeneration, degenerated cytoplasm, abundant membrane structures and flocculent material, mitochondria and misshapen nuclei coupled with degraded plastids in vacuoles, and nuclei enveloped by rubber granule. In D. fargesii, the nuclei of the secretory epidermal cells become TUNEL-positive from the sunken stage to the late expanding stage, then DAPI-negative during the mature stage, indicating an early event of deoxyribonucleic acid (DNA) cleavage and a late event of complete DNA degeneration. Gel electrophoresis indicates that DNA cleavage is random and does not result in the laddering pattern indicating multiples of internucleosomal units. During the PCD of secretory epidermal cells, the rubber granules continue to be synthesized and accumulated in the secretory epidermal cells despite nuclear degradation. The PCD’s role in laticiferous canal formation suggests that PCD may play important roles in gland development of plants.
- Published
- 2010
24. Ultrastructure and secretion of secretory canals in vegetative organs of Bupleurum chinense DC
- Author
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Xia, Cai, Ya Fu, Zhou, and Zheng Hai, Hu
- Subjects
Organelles ,Cytoplasm ,Microscopy, Electron, Transmission ,Oils, Volatile ,Plant Oils ,Biological Transport ,Endoplasmic Reticulum ,Exocytosis ,Bupleurum ,Mitochondria - Abstract
The development of secretory canals in vegetative organs of Bupleurum chinense DC. and the accumulation of essential oils were investigated by transmission electron microscopy (TEM) analysis. The secretion mechanism of the essential oil was also discussed. The results indicate that the plastid, ground substances of cytoplasm and mitochondria took part in the biosynthesis of oil or oil precursor. The endoplasmic reticulum involved in the transport of essential oil to the secretory lumen. At latter stages of development of secretory cells, numerous different sized vesicles fused with the plasmalemma along the boundary between two neighbor secretory cells and secreted the substance into the wall. Thus, the wall between two neighbor secretory cells near the lumen became loosely structured. Then, the wall lined the lumen near two neighbor secretory cells extruded numerous grey vesicles with various sizes on the side facing the lumen, and released these vesicles into the lumen. As a result, the manner of secretion in secretory canals of Bupleurum chinense DC. appeared to be exocytosis.
- Published
- 2008
25. Study on semantic image segmentation based on convolutional neural network.
- Author
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Lin-Hui Li, Bo Qian, Jing Lian, Wei-Na Zheng, and Ya-Fu Zhou
- Subjects
IMAGE segmentation ,ARTIFICIAL neural networks ,MACHINE learning ,COMPUTER vision ,RANDOM forest algorithms - Abstract
In recent years, traditional machine learning algorithms have been gradually replaced by deep learning algorithms. In the field of computer vision, convolutional neural network is considered to be the most successful deep learning model. Based on convolutional neural network, the accuracy of image classification has been greatly improved. In this paper, a method for semantic image segmentation based on convolutional neural network is proposed. Firstly, the disparity map is introduced to improve the segmentation accuracy. To obtain the disparity map with more continuous disparity values, an image smoothing method is used to optimize the disparity map. Then, based on the AlexNet network, a fully convolutional network architecture is proposed for semantic image segmentation. The unpooling operation is employed to restore the extracted features to their original sizes. The experimental results demonstrate that the network can achieve high pixel-wise prediction accuracy and that using RGB-D image as the input of the network can reduce the noisy segmentation outputs. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
26. Study on detection of preceding vehicles based on convolution neural network.
- Author
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Lin-hui Li, Zhi-mei Lun, Jing Lian, Lu-shan Yuan, Ya-fu Zhou, and Xiao-yi Ma
- Subjects
VEHICLES ,MATHEMATICAL convolutions ,VEHICLE detectors ,ALGORITHMS ,COMPUTER vision - Abstract
A convolution neural network (ConvNet) based vehicle detection system is developed in view of this issue that vehicle detection based on monocular vision is susceptible to be disturbed by complex background scene. Firstly, in order to detect shadows underneath vehicles for generating the candidate regions of shadow underneath vehicle, a road detection method using edge enhancement as well as an adaptive shadow segmentation approach are applied, which are aimed to better deal with the problems of grayscale variation on road and reduce the impact of the lighting variance. Then the ConvNet's structure applied to the road traffic environment is determined and trained by the established image sample sets. The shadow regions detected wrongly as the shadows underneath vehicles are recognized by ConvNet and removed from the preliminary detection results so as to precisely verify the presence of vehicles in an image. The experimental results indicate that this algorithm described in this paper is effective and precise, which can distinguish well between vehicles and background interferences. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
27. Leaf-shape remodeling: programmed cell death in fistular leaves of Allium fistulosum.
- Author
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Xi‐Lu Ni, Hui Su, Ya‐fu Zhou, Feng‐Hua Wang, and Wen‐Zhe Liu
- Subjects
ALLIUM ,LILIACEAE ,APOPTOSIS ,TRANSMISSION electron microscopy ,GEL electrophoresis - Abstract
Some species of Allium in Liliaceae have fistular leaves. The fistular lamina of Allium fistulosum undergoes a process from solid to hollow during development. The aims were to reveal the process of fistular leaf formation involved in programmed cell death (PCD) and to compare the cytological events in the execution of cell death to those in the unusual leaf perforations or plant aerenchyma formation. In this study, light and transmission electron microscopy were used to characterize the development of fistular leaves and cytological events. Terminal deoxynucleotidyl transferase‐mediated dUTP nick end labeling (TUNEL) assays and gel electrophoresis were used to determine nuclear DNA cleavage during the PCD. The cavity arises in the leaf blade by degradation of specialized cells, the designated pre‐cavity cells, in the center of the leaves. Nuclei of cells within the pre‐cavity site become TUNEL‐positive, indicating that DNA cleavage is an early event. Gel electrophoresis revealed that DNA internucleosomal cleavage occurred resulting in a characteristic DNA ladder. Ultrastructural analysis of cells at the different stages showed disrupted vacuoles, misshapen nuclei with condensed chromatin, degraded cytoplasm and organelles and emergence of secondary vacuoles. The cell walls degraded last, and residue of degraded cell walls aggregated together. These results revealed that PCD plays a critical role in the development of A. fistulosum fistular leaves. The continuous cavity in A. fistulosum leaves resemble the aerenchyma in the pith of some gramineous plants to improve gas exchange. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
28. Programmed cell death: A mechanism for the lysigenous formation of secretory cavities in leaves of Dictamnus dasycarpus.
- Author
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Ya-Fu Zhou, Shao-Li Mao, Si-Feng Li, Xi-Lu Ni, Bin Li, and Wen-Zhe Liu
- Subjects
- *
APOPTOSIS , *RUTACEAE , *PLANT cytology , *PLANT development , *GEL electrophoresis , *ESSENTIAL oils , *PLANTS - Abstract
The formation of secretory cavities in Rutaceae has been the subject of great interest. In this study, cytological events that are involved in the lysigenous formation of the secretory cavities in the leaves of Dictamnus dasycarpus are characterized by an interesting pattern of programmed cell death (PCD). During the developmental process, clusters of cells from a single protoepidermal cell embark on different trajectories and undergo different cell death fates: the cell walls of the secretory cells have characteristics of thinning or complete breakdown, while the sheath cells present a predominantly thick-walled feature. A DAPI assay shows deformed nuclei that are further confirmed to be TUNEL-positive. Gel electrophoresis indicates that DNA cleavage is random and does not result in ladder-like DNA fragmentation. Ultrastructurally, several remarkable features of PCD have been determined, such as misshapen nuclei with condensed chromatin and a significantly diffused membrane, degenerated mitochondria and plastids with disturbed membrane systems, multivesicular bodies, plastolysomes, vacuole disruption and lysis of the center secretory cell. Cytological evidence and Nile red stains exhibit abundant essential oils accumulated in degenerated outer secretory cells after the dissolution of the center secretory cell. In addition, explanations of taxonomic importance and the relationship between PCD and oil droplet accumulation in the secretory cavities are also discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
29. Characterization of the mitochondrial genome of Alloxiphidiopsis emarginata (Orthoptera, Tettigoniidae, Meconematinae)
- Author
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Shao Li Mao, Yuan Lu, Lu Lu Xun, and Ya Fu Zhou
- Subjects
alloxiphidiopsis emarginata ,meconematinae ,mitochondrial genome ,phylogeny ,Genetics ,QH426-470 - Abstract
The length of Alloxiphidiopsis emarginata complete mitogenome was 16,207 bp and contained the typical gene arrangement, base composition, codon usage found in other related species. The overall base composition exhibited obvious anti-G (10.6%) and AT bias (71.6%). The initiation codons of all PCGs were typical ATN (ATA/ATG/ATT), and the termination codons were TAA, TAG, or incomplete stop codon T. All tRNAs could be folded into typical cloverleaf secondary structures, except tRNASer (AGN). Phylogenetic analyses showed that A. emarginata was closer with Xizicus howardi.
- Published
- 2019
- Full Text
- View/download PDF
30. Complete mitochondrial genome of Xiphidiopsis (Xiphidiopsis) gurneyi (Orthoptera, Tettigoniidae, Meconematinae)
- Author
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Shao Li Mao, Zhong Ying Qiu, Qian Li, Yang Li, and Ya Fu Zhou
- Subjects
meconematinae ,xiphidiopsis (xiphidiopsis) gurneyi ,mitochondrial genome ,phylogeny ,Genetics ,QH426-470 - Abstract
Xiphidiopsis (Xiphidiopsis) gurneyi belongs to Meconematinae. The complete mitochondrial genome of X. (X.) gurneyi was sequenced by the next-generation sequencing (NGS) technology. The total length of the mitogenome was 16,225 bp and contains the typical gene arrangement, base composition, codon usage found in Meconematinae species. Phylogenetic tree was constructed based on concatenated datasets of PCGs and rRNAs of X. (X.) gurneyi and 19 Tettigoniidae species to assess their phylogenic relationship. Phylogenetic analysis showed that X. (X.) gurneyi was more closely related to the genus of Xizicus.
- Published
- 2018
- Full Text
- View/download PDF
31. The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China
- Author
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Ya Fu Zhou, Yu Chao Wang, Xi Lu Ni, and Shao Li Mao
- Subjects
fargesia qinlingensis ,chloroplast genome ,endemic species ,Genetics ,QH426-470 - Abstract
The complete chloroplast genome of Fargesia qinlingensis (Poaceae) has been reconstructed from the whole-genome Illumina sequencing data. The complete chloroplast genome sequence of F. qinlingensis obtained in this study was 139,640 bp in length, with a large single copy (LSC) region of 83,220 bp, a small single copy (SSC) region of 12,826 bp, separated by two inverted repeat (IR) regions of 21,797 bp each. The GC content was 38.9%, and in the LSC, SSC, and IR regions were 37.0%, 33.2%, and 44.2%, respectively. A total of 130 genes were annotated, including 83 protein-coding genes (PCGs), 39 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The result of the phylogenetic analysis showed that F. qinlingensis was more closely related to the species of F. denudata.
- Published
- 2018
- Full Text
- View/download PDF
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