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Understanding biodiversity changes, along with its driving factors and mechanisms, is crucial in biogeography and community ecology. Beta diversity is an indicator for discerning the compositional variations among communities and is essential role in fostering a comprehensive understanding of the ecological processes shaping biodiversity distribution patterns. This study quantitatively evaluated the beta diversity of macroinvertebrates in the Wei River Basin, focusing on: (i) contributions of turnover and nestedness to taxonomic, functional, and phylogenetic total beta diversity, (ii) correlations between these beta diversity dimensions, and (iii) the influences of local, climatic, and spatial factors on beta diversity. We analyzed macroinvertebrate data from 51 sampling locations in the Wei River Basin and explored the relationships between different beta diversity dimensions using the Mantel test. Additionally, we assessed the relative influence of local, climatic, and spatial factors on beta diversity through distance-based redundancy analysis and variance partitioning methods. The results indicated that turnover predominantly affects taxonomic and phylogenetic beta diversity, while nestedness mainly drives functional beta diversity. Functional beta diversity was more weakly associated with the other dimensions. Local environmental factors significantly influenced taxonomic and phylogenetic beta diversity, whereas spatial factors had a stronger influence on functional beta diversity. Our findings highlight the need for conservation strategies to integrate taxonomic, functional, and phylogenetic dimensions, transcending traditional species-level approaches.

Freshwater biodiversity has been declining in urban areas, which may threaten ecosystem functions. Although many studies have demonstrated a positive correlation between biodiversity and ecosystem functioning (BEF) in terrestrial and marine ecosystems, little is known about the BEF relationship in freshwater environments, especially in highly urbanized regions where water pollution is a major concern. Eutrophication in urban water bodies may trigger algae blooms, decreasing the evenness or functional divergence (FDiv) of phytoplankton communities, thus negatively affecting ecosystem functioning. Through an annual field investigation, we clarified the relationship between phytoplankton diversity and ecosystem functioning, represented as resource use efficiency (RUE), in an urban river in northern China. Results indicated that evenness in the phytoplankton community contributes most to driving ecosystem functioning compared to environmental factors. The relative abundance of dominant Bacillariophyta was positively correlated with the resource use efficiency of phytoplankton (RUEpp) but negatively correlated with the resource use efficiency of zooplankton (RUEzp). Both phytoplankton evenness and functional divergence were negatively linked to RUEpp but positively to RUEzp. Our findings suggest that the reduction of phytoplankton evenness and functional divergence may seriously threaten resource use efficiency (RUE), and its potential mechanism can provide a crucial reference for water quality protection and sustainable water resource utilization in the basin.

Recent anthropogenic activities have escalated human exploitation of riparian zones of river ecosystems, consequently diminishing aquatic biodiversity. This intensification of land use is also causing water quality degradation and changes in water environmental factors, evidenced by increased nutrient levels and adversely impacting the community structure and diversity of aquatic organisms. Notably, the Weihe River Basin, the largest tributary of the Yellow River, has demonstrated signs of significant anthropogenic pressure. Despite this, comprehensive investigations examining the effects of land-use intensity on aquatic organism diversity in this watershed remain limited. In this study, the environmental impacts and macroinvertebrate diversity under high-intensity and low-intensity land-use scenarios within the Weihe River Basin were investigated through field surveys conducted during the spring and autumn seasons. Our results demonstrated that areas under high-intensity land use exhibited elevated nutrient concentrations (e.g., total nitrogen) compared to those under low-intensity land use. These environmental changes significantly influenced the macroinvertebrate community structure, reducing functional and phylogenetic diversities in high-intensity land-use watersheds. Hydrological factors (water depth, river width, and discharge) have a significant impact on macroinvertebrate taxonomic diversity. Thus, understanding the effects of land-use intensity on aquatic biodiversity is essential for ecological assessments of impacted watersheds and developing management strategies for the sustainable use and planning of riparian lands in the Weihe River Basin.

The Eurasian otter Lutra lutra is a generalist carnivore that is widely distributed in many aquatic ecosystems. Based on its inherent attributes of opportunistic foraging behaviour and broad dietary range, it is naturally considered a potential sampler of the diversity of aquatic vertebrates. To test the ability and efficiency of otters as a diversity sampler, we used DNA metabarcoding to investigate the composition in vertebrates of the diet of otters that inhabit a forest stream area in northeast China. Twenty vertebrate prey taxa were detected in 98 otter spraints. Otter diet mainly comprised aquatic fishes (59.4%) and amphibians (39.0%). We also used traditional approaches to investigate fish communities at 60 sampling sites in the same area to determine the relationship between fish population composition in the environment and otter diet. The comparison revealed that 28 species of fish were distributed in this area, of which five are simultaneously detected in otter spraints. This indicates that molecular analysis of the diet of otters is not an ideal approach for investigating fish diversity, at least when using the 12SV5 primer pair. Based on a review of the available molecular research on otter diet, we conclude that the low species resolution may be due to the presence of many closely-related prey species in native habitats and lack of suitable barcodes. Considering the remarkable power of diet metabarcoding analysis in capturing elusive and rare species, it represents an approach that can compensate for the defects associated with fishing methods and we suggest that it can be used as an auxiliary means of measuring traditional fish diversity.

Abstract Predator–prey interactions are critical for understanding species composition and community assembly; however, there is still limited research on whether and how the prey species composition or community assembly in natural communities are mediated by predators. To address this question, we performed a field investigation to examine the influence of the presence of Lutra lutra on the diversity of fish communities of the Hunchun River Basin, Jilin Province, China. Our results indicate that L. lutra, as a potential umbrella species and generalist predator in the stream ecosystem, promotes the coexistence of a vast variety of fish taxa, which emphasizes the importance of top-down control in the ecological community. We suggest that L. lutra regulates the fish community assembly likely through the stochastic process. Although this was a pilot study regarding predator–prey interactions, the results highlight the effects of predators on the prey community assembly, and emphasize the role of predators on the maintenance of biodiversity and ecosystem function. Future conservation decisions involving ecosystem biodiversity should require the inclusion of predation intensity. The inclusion of scientific research and protection of umbrella species would thus constitute an additional and important step in biodiversity conservation.

Masu salmon, Oncorhynchus masou (Brevoort 1856), a commercially important fish species endemic to the North Pacific Ocean, attained national second-level protected animal status in China in 2021. Despite this recognition, knowledge about the trophic ecology of this fish remains limited. This study investigated the diet diversity of fluviatile Masu salmon in the Mijiang River, China, utilizing the gastrointestinal tract environmental DNA (GITeDNA) metabarcoding and morphological identification. The results revealed a diverse prey composition, ranging from terrestrial and aquatic invertebrates to small fishes. The fluviatile Masu salmon in general consumed noteworthily more aquatic prey than terrestrial prey. There were much more prey taxa and a higher diet diversity detected by GITeDNA metabarcoding than by morphological identification. GITeDNA metabarcoding showed that larger and older Masu salmon consumed significantly more terrestrial insects than aquatic prey species did, with 7366 verses 5012 sequences in the group of ≥20 cm, 9098 verses 4743 sequences in the group of ≥100 g and 11,540 verses 729 sequences in the group of age 3+. GITeDNA metabarcoding also showed size- and age-related diet diversity, indicating that the dietary niche breadth and trophic diversity of larger and older Masu salmon increased with food resources expanding to more terrestrial prey. Terrestrial invertebrates of riparian habitats play a vital role in the diet of fluviatile Masu salmon, especially larger individuals, highlighting their importance in connecting aquatic and terrestrial food webs. Conservation plans should prioritize the protection and restoration of riparian habitats. This study advocates the combined use of GITeDNA metabarcoding and morphological observation for a comprehensive understanding of fish diet diversity.

With the acceleration of urbanization, biodiversity and ecosystem functions of urban wetlands are facing serious challenges. The loss of aquatic plants in urban wetlands is becoming more frequent and intense due to human activities; nevertheless, the effects of aquatic plants on wetland ecosystems have received less attention. Therefore, we conducted field investigations across 10 urban wetlands in Jinan, Shandong Province, as a case in North China to examine the relationships between aquatic plant coverage and phytoplankton diversity, as well as resource use efficiency (RUE) in urban wetlands. Multivariate regression and partial least squares structural equation modeling (PLS-SEM) were used to analyze the water quality, phytoplankton diversity, and RUE. The results demonstrate that the increase in aquatic plant coverage significantly reduced the concentration of total nitrogen and suspended solids’ concentrations and significantly increased the phytoplankton diversity (e.g., species richness and functional diversity). The aquatic plant coverage significantly affected the composition of phytoplankton functional groups; for example, functional groups that had adapted to still-water and low-light conditions became dominant. Furthermore, the increase in phytoplankton diversity improved phytoplankton RUE, highlighting the importance of aquatic plants in maintaining wetland ecosystem functions. This study may provide a scientific basis for the management strategy of aquatic plants in urban wetlands, emphasizing the key role of appropriate aquatic plant cover in maintaining the ecological stability and ecosystem service functions of wetlands.

Rapid urbanization has triggered nutrient loading, which will inevitably lead to the eutrophication of water bodies and further affect the structure of aquatic populations. At present, eutrophication is a significant challenge for urban aquatic ecosystems. However, we still know little about the correlation between eutrophication in urban rivers and the composition of aquatic functional groups. The effects of urban river eutrophication on rotifer communities were investigated using an annual field survey of the Jinan section of the Xiaoqing River, a typical urban river in northern China. Using functional diversity (FD) and beta diversity, the spatiotemporal variation of the aquatic biological functional groups regime along stretches subject to different eutrophication was investigated. The functional evenness (FEve) and functional divergence (FDiv) decreased significantly with the increment of the trophic level index. Functional diversity exhibits an extremely low level across functional groups, with the richness difference (RichDiff) being an important component. The results indicate that eutrophication led to the homogenization of rotifer communities. This can be attributed to the functional homogenization of the rotifer community in the Jinan section of the Xiaoqing River. The observed homogenization may be due to widely distributed species complementing the ecological niche space. Our findings provide valuable information on the conservation of the urban river under the threat of eutrophication caused by high-intensity human activities.

The emergence of metacommunity theory has significantly contributed to our understanding of the drivers of community assembly and biome variation. The Network Location Hypothesis (NPH) posits that tributary communities situated at the source regions of a river are disproportionately susceptible to environmental filtering due to their remote location and consequent reduced connectivity to downstream reaches of the river system. However, downstream communities located in central parts of the river network exhibit increased connectivity to other communities, thereby making them more susceptible to spatial effects. Nonetheless, empirical studies testing this theory have been relatively scarce to date. Additionally, it is widely acknowledged that integrating multiple dimensions of beta diversity can enhance our understanding of the mechanisms driving community assembly. Based on the above, we collected macroinvertebrate samples from a boreal river in China to verify these views. Specifically, we examined the significance of network location on metacommunity assembly (NPH hypothesis) by utilizing a distance-decay relationship and simultaneously assessing multiple dimensions of ecological drivers of beta diversity. Our results revealed that the predictions of the NPH hypothesis were not supported in the study area, with the impact of environmental filtering on community assembly being prevalent regardless of network location. Taxonomic beta diversity consists almost entirely of turnover, with turnover contributing more to functional beta diversity than nestedness, while phylogenetic beta diversity consists of a combination of turnover and nestedness. We observed that a uniform species composition across sites led to higher taxonomic beta diversity in the study area. However, functional redundancy and the presence of closely related species across sites resulted in lower functional and phylogenetic beta diversity compared to taxonomic beta diversity. Although we found some correlation between phylogenetic and functional beta diversity, their mechanisms of variation were not consistent, with phylogenetic beta diversity showing greater variability than functional beta diversity. This suggests that differences in functional traits may be primarily driven by more distantly related species. Therefore, our findings do not fully support the use of phylogenetic distance as a surrogate for functional distance. The present study emphasizes the significance of incorporating multiple dimensions of beta diversity in metacommunity research, as they offer unique insights into beta diversity. Specifically, we found that environmental factors play a crucial role in shaping macroinvertebrate community composition and functional traits, which is associated with the higher environmental heterogeneity within the study area. In contrast, spatial processes, such as dispersal limitations, lead to variations in the evolutionary history of organisms across different locations, which is associated with the larger geographical extent of the study area.

The authors report the landscape of circulating platelet aggregates in COVID-19 obtained by massive single-cell image-based profiling and temporal monitoring to elucidate the underlying process of COVID-19-assocaited microvascular thrombosis.

Takehiro Kazama et al. develop a framework based on Lotka–Volterra models to identify the relative influences of production rate, defense traits, nutrient contents of producers, and predation, in affecting the biomass ratio of herbivores to primary producers in a community. They apply this framework to freshwater plankton systems and find that while all factors affect the biomass ratio, carnivore abundance has the greatest relative influence.

Cadmium is one of the major heavy metal pollutants in the environment. However, the toxicity targets and response mechanisms in photosynthetic organisms to cadmium are lacking. This study explored the physiological response of Synechocystis sp. PCC 6803 to cadmium stress; the toxicity targets and the resistance mechanism were screened. The results showed that cadmium led to an increase in reactive oxygen species content, superoxide dismutase activity, and the lipid peroxidation level, which damaged the cell’s photosynthesis and ultrastructure. The cross-omics analysis found 1073 differentially expressed genes (DEGs), of which only 84 genes had the same expression trend at the mRNA and protein levels. The bioinformatics analysis found that the toxic effects of cadmium were inhibiting the expression of the proteins for the photosynthesis-antenna, photosynthesis, and ribosome pathway. The cell’s response included the upregulation of proteins related to the two-component system, biosynthesis, and ABC transporter pathway. The study confirmed that the target sites of cadmium were chlorophyll a synthesis, photosynthetic electron transport chains, and ribosomes; the response mechanism to cadmium toxicity was the upregulation of the ABC transporter pathway and its protein expression. This study provides evidence to obtain insight into the toxicity targets and molecular response mechanism of Synechocystis sp. PCC 6803 to cadmium stress.

The urbanization of riverine landscapes is an increasing threat to river ecosystems. However, it is unclear which metrics can best assess the response of macroinvertebrates to the conversion of forested lands to urban and agricultural lands. The main goal of this study is to examine whether trait-based approaches are more sensitive than taxonomic approaches in distinguishing macroinvertebrate responses to different land use types in a highly urbanized area of northern China. Results based on 14 environmental variables showed a significant difference across a human-induced environmental gradient. The results showed that no significant differences were observed in terms of taxonomic diversity indices between the different land use types. Functional evenness (FEve) and Rao’s quadratic entropy decreased with the increase in urban area caused by the intensification of human activity, demonstrating that functional diversity is more sensitive than taxonomic diversity in discriminating between different land use types. In addition, the results based on RLQ (physical–chemical variables (R), macroinvertebrate taxa (L), and species traits (Q)) and fourth-corner analyses indicated that the trait states of bi- or multivoltine, high dispersal capacity, and not-streamlined body shape were much higher in the agricultural area and positively related to farmland percentage. Taxa with large body size were dominant in urban areas and were positively correlated with EC. Overall, the observed responses of traits to environmental variables suggest that trait-based approaches should be incorporated into land use management for river restoration.

The effect of salinity on the survival, growth, development and neonate production of the cladoceran Scapholeberis mucronata (O. F. Müller) was studied by using Chlorella pyrenoidosa as feed at 1, 2, 3, 4 salinity gradients and control group according to the pre-experiment and median lethal concentration experiment. The acute effect of salinity on this species indicated that 4 and 4.5 was its limit superior of reproduction and survival. The survival rate and growth rate of individuals reared at 1 and 2 salinity gradients were higher than that of those reared at the other gradients. The mean size of the female adult decreased from 820 to 743 μm when the salinity increased from 1 to 4. Among individuals reared at 1 and 2, the intrinsic rate of natural increase (rm) of population was 1.021 and 0.903, respectively; the rate of egg production was 1.281 and 1.390, respectively; the cumulative egg production was 83.2 and 106.0 and the mean life span was 16.05 and 17.30, respectively. These values of life history parameters were higher than those of individuals reared at 3. No eggs were produced by females reared at 4 during the whole experiment. Furthermore, individuals reared at 1 and 2 had faster embryonic development. The above results implied that S. mucronata is relatively well adapted to low-salinity conditions (1–2). Resting egg formation and sexual reproduction did not occur at all the tested salinity gradients.

Abstract To cope with predation, many prey species have developed inducible defenses in terms of morphology, behavior, and life history. Rotifers were the first model organisms used to evaluate the ecology and evolution of inducible defenses in aquatic ecosystems. Since the middle of last century, only visible morphological defenses, such as spine development, have been found and only in a few rotifer species. Given the development of ultrastructural defenses is taxonomically widespread in aquatic ecosystems, we hypothesize that rotifer prey, particularly small-sized species, can develop such inducible defenses. We evaluated morphological response of two common Brachionus herbivores (B. calyciflorus and B. angularis) to predatory rotifer Asplanchna brightwellii. Results confirmed existence of predator-induced ultrastructural defenses, which are expressed as increased lorica thickness and enhanced lorica hardness. Such inducible defenses are more evident and effective in the smaller sized B. angularis, leading to higher fitness of B. angularis in predator-prey interactions. As anticipated, development of defenses has inevitable fitness costs manifested as decreased reproduction or reduced sex investment. Our results not only extend understanding of inducible ultrastructural defense to other planktonic taxa that were previously observed only in cladocerans, but also verify effective mechanical protection of such hidden defensive morphology.

Suspended floc and fixed biofilm are two commonly applied strategies for heterotrophic denitrification in wastewater treatment. These two strategies use different carbon sources and reside within different ecological niches for microbial aggregation, which were hypothesized to show distinct microbial structures and metabolic fitness. We surveyed three floc reactors and three biofilm reactors for denitrification and determined if there were distinct microbial aggregations. Multiple molecular omics approaches were used to determine the microbial community composition, co-occurrence network and metabolic pathways. Proteobacteria was the dominating and most active phylum among all samples. Carbon source played an important role in shaping the microbial community composition while the distribution of functional protein was largely influenced by salinity. We found that the topological network features had different ecological patterns and that the microorganisms in the biofilm reactors had more nodes but less interactions than those in floc reactors. The large niche differences in the biofilm reactors explained the observed high microbial diversity, functional redundancy and resulting high system stability. We also observed a lower proportion of denitrifiers and higher resistance to oxygen and salinity perturbation in the biofilm reactors than the floc reactors. Our findings support our hypothesis that niche differences caused a distinct microbial structure and increased microbial ecology distribution, which has the potential to improve system efficiency and stability. Keywords: Denitrification, Microbial aggregation, Multi-omics, Niche difference, Network

Land use changes usually lead to the deterioration of freshwater ecosystems and reduced biodiversity. Aquatic organisms are considered valuable indicators for reflecting the conditions of freshwater ecosystems. Understanding the relationship between organisms and land use type, as well as physiochemical conditions, is beneficial for the management, monitoring and restoration of aquatic ecosystems. In this study, fish, macroinvertebrates, and diatoms were investigated at 60 sampling sites in the Wei River basin from October 2012 to April 2013 to determine the relationships between the environment and aquatic organisms. The richness, abundance, Shannon diversity, evenness, Margalef diversity, and Simpson diversity were selected as biological indices for analyzing the correlation between these communities and environmental variables according to Pearson’s coefficient. Canonical correspondence analysis (CCA) was used to analyze the relationship between the biotic communities and environmental variables. The results showed that three diatom indices were weakly correlated with chemical oxygen demand (COD), qualitative Habitat Evaluation Index (QH), and dissolved oxygen (DO). Four macroinvertebrate indices were associated with total phosphorus (TP) while total nitrogen (TN), and agricultural land (AL) had a significant influence on assemblages, suggesting that macroinvertebrates could respond to nutrient levels in the Wei River basin. All land use types had a strong effect on fish indices except AL, indicating that fish would be better used as indicators of spatial changes in the aquatic ecosystem. In conclusion, fish and macroinvertebrates have the potential for use in routine monitoring programs in the Wei River basin.

Integrated multi trophic aquaculture (IMTA) improves the production of aquatic animals by promoting nutrient utilization through different tropical levels. Microorganisms play an important role in elements cycling, energy flow and farmed-species health. The aim of this study was to evaluate how feed types, fresh frozen fish diet (FFD) or formulated diet (FD), influence the microbial community diversity and functionality in both water and sediment in a marine IMTA system. Preferable water quality, higher animal yields and higher cost efficiency were achieved in the FD pond. Feed types changed the pond bacterial community distribution, especially in the rearing water. The FFD pond was dominated with Cyanobacteria in the water, which played an important role in nitrogen fixation through photosynthesis due to the high nitrogen input of the frozen fish diet. The high carbohydrate composition in the formulated diet triggered higher metabolic pathways related to carbon and lipid metabolism in the water of the FD pond. Sediment had significantly higher microbial diversity than the rearing water. In sediment, the dominating genus, Sulfurovum and Desulfobulbus, were found to be positively correlated by network analysis, which had similar functionality in sulfur transformation. The relatively higher rates of antibiotic biosynthesis in the FFD sediment might be related to the pathogenic bacteria introduced by the trash fish diet. The difference in microbial community composition and metabolic pathways may be associated with the different pathways for nutrient cycling and animal growth performance. The formulated diet was determined to be more ecologically and economically sustainable than the frozen fish diet for marine IMTA pond systems.