Search

Recent attention-based volumetric segmentation (VS) methods have achieved remarkable performance in the medical domain which focuses on modeling long-range dependencies. However, for voxel-wise prediction tasks, discriminative local features are key components for the performance of the VS models which is missing in attention-based VS methods. Aiming at resolving this issue, we deliberately incorporate the convolutional encoder branch with transformer backbone to extract local and global features in a parallel manner and aggregate them in Cross Feature Mixer Module (CFMM) for better prediction of segmentation mask. Consequently, we observe that the derived model, Y-CT-Net, achieves competitive performance on multiple medical segmentation tasks. For example, on multi-organ segmentation, Y-CT-Net achieves an 82.4% dice score, surpassing well-tuned VS Transformer/CNN-like baselines UNETR/ResNet-3D by 2.9%/1.4%. With the success of Y-CT-Net, we extend this concept with hybrid attention models, that derived Y-CH-Net model, which brings a 3% improvement in terms of HD95 score for same segmentation task. The effectiveness of both models Y-CT-Net and Y-CH-Net verifies our hypothesis and motivates us to initiate the concept of Y-CA-Net, a versatile generic architecture based upon any two encoders and a decoder backbones, to fully exploit the complementary strengths of both convolution and attention mechanisms. Based on experimental results, we argue Y-CA-Net is a key player in achieving superior results for volumetric segmentation.

High-resolution images are preferable in medical imaging domain as they significantly improve the diagnostic capability of the underlying method. In particular, high resolution helps substantially in improving automatic image segmentation. However, most of the existing deep learning-based techniques for medical image segmentation are optimized for input images having small spatial dimensions and perform poorly on high-resolution images. To address this shortcoming, we propose a parallel-in-branch architecture called TransResNet, which incorporates Transformer and CNN in a parallel manner to extract features from multi-resolution images independently. In TransResNet, we introduce Cross Grafting Module (CGM), which generates the grafted features, enriched in both global semantic and low-level spatial details, by combining the feature maps from Transformer and CNN branches through fusion and self-attention mechanism. Moreover, we use these grafted features in the decoding process, increasing the information flow for better prediction of the segmentation mask. Extensive experiments on ten datasets demonstrate that TransResNet achieves either state-of-the-art or competitive results on several segmentation tasks, including skin lesion, retinal vessel, and polyp segmentation. The source code and pre-trained models are available at https://github.com/Sharifmhamza/TransResNet., Comment: The 33rd British Machine Vision Conference 2022

Generalized Category Discovery (GCD) aims to classify inputs into both known and novel categories, a task crucial for open-world scientific discoveries. However, current GCD methods are limited to unimodal data, overlooking the inherently multimodal nature of most real-world data. In this work, we extend GCD to a multimodal setting, where inputs from different modalities provide richer and complementary information. Through theoretical analysis and empirical validation, we identify that the key challenge in multimodal GCD lies in effectively aligning heterogeneous information across modalities. To address this, we propose MM-GCD, a novel framework that aligns both the feature and output spaces of different modalities using contrastive learning and distillation techniques. MM-GCD achieves new state-of-the-art performance on the UPMC-Food101 and N24News datasets, surpassing previous methods by 11.5\% and 4.7\%, respectively.

We investigate linear network coding in the context of robust function computation, where a sink node is tasked with computing a target function of messages generated at multiple source nodes. In a previous work, a new distance measure was introduced to evaluate the error tolerance of a linear network code for function computation, along with a Singleton-like bound for this distance. In this paper, we first present a minimum distance decoder for these linear network codes. We then focus on the sum function and the identity function, showing that in any directed acyclic network there are two classes of linear network codes for these target functions, respectively, that attain the Singleton-like bound. Additionally, we explore the application of these codes in distributed computing and design a distributed gradient coding scheme in a heterogeneous setting, optimizing the trade-off between straggler tolerance, computation cost, and communication cost. This scheme can also defend against Byzantine attacks.

The drive to control tokamaks, a prominent technology in nuclear fusion, is essential due to its potential to provide a virtually unlimited source of clean energy. Reinforcement learning (RL) promises improved flexibility to manage the intricate and non-linear dynamics of the plasma encapsulated in a tokamak. However, RL typically requires substantial interaction with a simulator capable of accurately evolving the high-dimensional plasma state. Compared to first-principle-based simulators, whose intense computations lead to sluggish RL training, we devise an effective method to acquire a fully data-driven simulator, by mitigating the arising compounding error issue due to the underlying autoregressive nature. With high accuracy and appealing extrapolation capability, this high-fidelity dynamics model subsequently enables the rapid training of a qualified RL agent to directly generate engineering-reasonable magnetic coil commands, aiming at the desired long-term targets of plasma current and last closed flux surface. Together with a surrogate magnetic equilibrium reconstruction model EFITNN, the RL agent successfully maintains a $100$-ms, $1$ kHz trajectory control with accurate waveform tracking on the HL-3 tokamak. Furthermore, it also demonstrates the feasibility of zero-shot adaptation to changed triangularity targets, confirming the robustness of the developed data-driven dynamics model. Our work underscores the advantage of fully data-driven dynamics models in yielding RL-based trajectory control policies at a sufficiently fast pace, an anticipated engineering requirement in daily discharge practices for the upcoming ITER device.

Cross-domain recommendation (CDR) aims to improve recommendation accuracy in sparse domains by transferring knowledge from data-rich domains. However, existing CDR methods often assume the availability of user-item interaction data across domains, overlooking user privacy concerns. Furthermore, these methods suffer from performance degradation in scenarios with sparse overlapping users, as they typically depend on a large number of fully shared users for effective knowledge transfer. To address these challenges, we propose a Federated Prototype-based Contrastive Learning (CL) method for Privacy-Preserving CDR, named FedPCL-CDR. This approach utilizes non-overlapping user information and prototypes to improve multi-domain performance while protecting user privacy. FedPCL-CDR comprises two modules: local domain (client) learning and global server aggregation. In the local domain, FedPCL-CDR clusters all user data to learn representative prototypes, effectively utilizing non-overlapping user information and addressing the sparse overlapping user issue. It then facilitates knowledge transfer by employing both local and global prototypes returned from the server in a CL manner. Simultaneously, the global server aggregates representative prototypes from local domains to learn both local and global prototypes. The combination of prototypes and federated learning (FL) ensures that sensitive user data remains decentralized, with only prototypes being shared across domains, thereby protecting user privacy. Extensive experiments on four CDR tasks using two real-world datasets demonstrate that FedPCL-CDR outperforms the state-of-the-art baselines.

Large language models (LLMs) and retrieval-augmented generation (RAG) techniques have revolutionized traditional information access, enabling AI agent to search and summarize information on behalf of users during dynamic dialogues. Despite their potential, current AI search engines exhibit considerable room for improvement in several critical areas. These areas include the support for multimodal information, the delivery of personalized responses, the capability to logically answer complex questions, and the facilitation of more flexible interactions. This paper proposes a novel AI Search Engine framework called the Agent Collaboration Network (ACN). The ACN framework consists of multiple specialized agents working collaboratively, each with distinct roles such as Account Manager, Solution Strategist, Information Manager, and Content Creator. This framework integrates mechanisms for picture content understanding, user profile tracking, and online evolution, enhancing the AI search engine's response quality, personalization, and interactivity. A highlight of the ACN is the introduction of a Reflective Forward Optimization method (RFO), which supports the online synergistic adjustment among agents. This feature endows the ACN with online learning capabilities, ensuring that the system has strong interactive flexibility and can promptly adapt to user feedback. This learning method may also serve as an optimization approach for agent-based systems, potentially influencing other domains of agent applications., Comment: ACMMM 2024 MMGR WORKSHOP

Cross-domain recommendation (CDR) aims to address the data-sparsity problem by transferring knowledge across domains. Existing CDR methods generally assume that the user-item interaction data is shareable between domains, which leads to privacy leakage. Recently, some privacy-preserving CDR (PPCDR) models have been proposed to solve this problem. However, they primarily transfer simple representations learned only from user-item interaction histories, overlooking other useful side information, leading to inaccurate user preferences. Additionally, they transfer differentially private user-item interaction matrices or embeddings across domains to protect privacy. However, these methods offer limited privacy protection, as attackers may exploit external information to infer the original data. To address these challenges, we propose a novel Federated User Preference Modeling (FUPM) framework. In FUPM, first, a novel comprehensive preference exploration module is proposed to learn users' comprehensive preferences from both interaction data and additional data including review texts and potentially positive items. Next, a private preference transfer module is designed to first learn differentially private local and global prototypes, and then privately transfer the global prototypes using a federated learning strategy. These prototypes are generalized representations of user groups, making it difficult for attackers to infer individual information. Extensive experiments on four CDR tasks conducted on the Amazon and Douban datasets validate the superiority of FUPM over SOTA baselines. Code is available at https://github.com/Lili1013/FUPM.

Modeling feature interactions is crucial for click-through rate (CTR) prediction, particularly when it comes to high-order explicit interactions. Traditional methods struggle with this task because they often predefine a maximum interaction order, which relies heavily on prior knowledge and can limit the model's effectiveness. Additionally, modeling high-order interactions typically leads to increased computational costs. Therefore, the challenge lies in adaptively modeling high-order feature interactions while maintaining efficiency. To address this issue, we introduce Kolmogorov-Arnold Represented Sparse Efficient Interaction Network (KarSein), designed to optimize both predictive accuracy and computational efficiency. We firstly identify limitations of directly applying Kolmogorov-Arnold Networks (KAN) to CTR and then introduce KarSein to overcome these issues. It features a novel architecture that reduces the computational costs of KAN and supports embedding vectors as feature inputs. Additionally, KarSein employs guided symbolic regression to address the challenge of KAN in spontaneously learning multiplicative relationships. Extensive experiments demonstrate KarSein's superior performance, achieving significant predictive accuracy with minimal computational overhead. Furthermore, KarSein maintains strong global explainability while enabling the removal of redundant features, resulting in a sparse network structure. These advantages also position KarSein as a promising method for efficient inference., Comment: KarSein for CTR

Object parts serve as crucial intermediate representations in various downstream tasks, but part-level representation learning still has not received as much attention as other vision tasks. Previous research has established that Vision Transformer can learn instance-level attention without labels, extracting high-quality instance-level representations for boosting downstream tasks. In this paper, we achieve unsupervised part-specific attention learning using a novel paradigm and further employ the part representations to improve part discovery performance. Specifically, paired images are generated from the same image with different geometric transformations, and multiple part representations are extracted from these paired images using a novel module, named PartFormer. These part representations from the paired images are then exchanged to improve geometric transformation invariance. Subsequently, the part representations are aligned with the feature map extracted by a feature map encoder, achieving high similarity with the pixel representations of the corresponding part regions and low similarity in irrelevant regions. Finally, the geometric and semantic constraints are applied to the part representations through the intermediate results in alignment for part-specific attention learning, encouraging the PartFormer to focus locally and the part representations to explicitly include the information of the corresponding parts. Moreover, the aligned part representations can further serve as a series of reliable detectors in the testing phase, predicting pixel masks for part discovery. Extensive experiments are carried out on four widely used datasets, and our results demonstrate that the proposed method achieves competitive performance and robustness due to its part-specific attention., Comment: Accepted by TPAMI-2024

Video Anomaly Detection (VAD) automates the identification of unusual events, such as security threats in surveillance videos. In real-world applications, VAD models must effectively operate in cross-domain settings, identifying rare anomalies and scenarios not well-represented in the training data. However, existing cross-domain VAD methods focus on unsupervised learning, resulting in performance that falls short of real-world expectations. Since acquiring weak supervision, i.e., video-level labels, for the source domain is cost-effective, we conjecture that combining it with external unlabeled data has notable potential to enhance cross-domain performance. To this end, we introduce a novel weakly-supervised framework for Cross-Domain Learning (CDL) in VAD that incorporates external data during training by estimating its prediction bias and adaptively minimizing that using the predicted uncertainty. We demonstrate the effectiveness of the proposed CDL framework through comprehensive experiments conducted in various configurations on two large-scale VAD datasets: UCF-Crime and XD-Violence. Our method significantly surpasses the state-of-the-art works in cross-domain evaluations, achieving an average absolute improvement of 19.6% on UCF-Crime and 12.87% on XD-Violence.

We introduce a novel graph-based Retrieval-Augmented Generation (RAG) framework specifically designed for the medical domain, called \textbf{MedGraphRAG}, aimed at enhancing Large Language Model (LLM) capabilities for generating evidence-based medical responses, thereby improving safety and reliability when handling private medical data. Graph-based RAG (GraphRAG) leverages LLMs to organize RAG data into graphs, showing strong potential for gaining holistic insights from long-form documents. However, its standard implementation is overly complex for general use and lacks the ability to generate evidence-based responses, limiting its effectiveness in the medical field. To extend the capabilities of GraphRAG to the medical domain, we propose unique Triple Graph Construction and U-Retrieval techniques over it. In our graph construction, we create a triple-linked structure that connects user documents to credible medical sources and controlled vocabularies. In the retrieval process, we propose U-Retrieval which combines Top-down Precise Retrieval with Bottom-up Response Refinement to balance global context awareness with precise indexing. These effort enable both source information retrieval and comprehensive response generation. Our approach is validated on 9 medical Q\&A benchmarks, 2 health fact-checking benchmarks, and one collected dataset testing long-form generation. The results show that MedGraphRAG consistently outperforms state-of-the-art models across all benchmarks, while also ensuring that responses include credible source documentation and definitions. Our code is released at: https://github.com/MedicineToken/Medical-Graph-RAG.

Retrieval-augmented generation (RAG) techniques leverage the in-context learning capabilities of large language models (LLMs) to produce more accurate and relevant responses. Originating from the simple 'retrieve-then-read' approach, the RAG framework has evolved into a highly flexible and modular paradigm. A critical component, the Query Rewriter module, enhances knowledge retrieval by generating a search-friendly query. This method aligns input questions more closely with the knowledge base. Our research identifies opportunities to enhance the Query Rewriter module to Query Rewriter+ by generating multiple queries to overcome the Information Plateaus associated with a single query and by rewriting questions to eliminate Ambiguity, thereby clarifying the underlying intent. We also find that current RAG systems exhibit issues with Irrelevant Knowledge; to overcome this, we propose the Knowledge Filter. These two modules are both based on the instruction-tuned Gemma-2B model, which together enhance response quality. The final identified issue is Redundant Retrieval; we introduce the Memory Knowledge Reservoir and the Retriever Trigger to solve this. The former supports the dynamic expansion of the RAG system's knowledge base in a parameter-free manner, while the latter optimizes the cost for accessing external knowledge, thereby improving resource utilization and response efficiency. These four RAG modules synergistically improve the response quality and efficiency of the RAG system. The effectiveness of these modules has been validated through experiments and ablation studies across six common QA datasets. The source code can be accessed at https://github.com/Ancientshi/ERM4., Comment: ECAI2024 #1304

Symptom phenotypes are one of the key types of manifestations for diagnosis and treatment of various disease conditions. However, the diversity of symptom terminologies is one of the major obstacles hindering the analysis and knowledge sharing of various types of symptom-related medical data particularly in the fields of Traditional Chinese Medicine (TCM). Objective: This study aimed to construct an Integrated Ontology of symptom phenotypes (ISPO) to support the data mining of Chinese EMRs and real-world study in TCM field. Methods: To construct an integrated ontology of symptom phenotypes (ISPO), we manually annotated classical TCM textbooks and large-scale Chinese electronic medical records (EMRs) to collect symptom terms with support from a medical text annotation system. Furthermore, to facilitate the semantic interoperability between different terminologies, we incorporated public available biomedical vocabularies by manual mapping between Chinese terms and English terms with cross-references to source vocabularies. In addition, we evaluated the ISPO using independent clinical EMRs to provide a high-usable medical ontology for clinical data analysis. Results: By integrating 78,696 inpatient cases of EMRs, 5 biomedical vocabularies, 21 TCM books and dictionaries, ISPO provides 3,147 concepts, 23,475 terms, and 55,552 definition or contextual texts. Adhering to the taxonomical structure of the related anatomical systems of symptom phenotypes, ISPO provides 12 top-level categories and 79 middle-level sub-categories. The validation of data analysis showed the ISPO has a coverage rate of 95.35%, 98.53% and 92.66% for symptom terms with occurrence rates of 0.5% in additional three independent curated clinical datasets, which can demonstrate the significant value of ISPO in mapping clinical terms to ontologies., Comment: 39 pages, 6 figures, 6 tables

Cryogenic Electron Tomography (CryoET) is a useful imaging technology in structural biology that is hindered by its need for manual annotations, especially in particle picking. Recent works have endeavored to remedy this issue with few-shot learning or contrastive learning techniques. However, supervised training is still inevitable for them. We instead choose to leverage the power of existing 2D foundation models and present a novel, training-free framework, CryoSAM. In addition to prompt-based single-particle instance segmentation, our approach can automatically search for similar features, facilitating full tomogram semantic segmentation with only one prompt. CryoSAM is composed of two major parts: 1) a prompt-based 3D segmentation system that uses prompts to complete single-particle instance segmentation recursively with Cross-Plane Self-Prompting, and 2) a Hierarchical Feature Matching mechanism that efficiently matches relevant features with extracted tomogram features. They collaborate to enable the segmentation of all particles of one category with just one particle-specific prompt. Our experiments show that CryoSAM outperforms existing works by a significant margin and requires even fewer annotations in particle picking. Further visualizations demonstrate its ability when dealing with full tomogram segmentation for various subcellular structures. Our code is available at: https://github.com/xulabs/aitom, Comment: This preprint has not undergone peer review or any post-submission improvements or corrections. The Version of Record of this contribution will be published in MICCAI 2024

Transfer learning methods start performing poorly when the complexity of the learning task is increased. Most of these methods calculate the cumulative differences of all the matched features and then use them to back-propagate that loss through all the layers. Contrary to these methods, in this work, we propose a novel layer-wise learning scheme that adjusts learning parameters per layer as a function of the differences in the Jacobian/Attention/Hessian of the output activations w.r.t. the network parameters. We applied this novel scheme for attention map-based and derivative-based (first and second order) transfer learning methods. We received improved learning performance and stability against a wide range of datasets. From extensive experimental evaluation, we observed that the performance boost achieved by our method becomes more significant with the increasing difficulty of the learning task.

Combining the message-passing paradigm with the global attention mechanism has emerged as an effective framework for learning over graphs. The message-passing paradigm and the global attention mechanism fundamentally generate node embeddings based on information aggregated from a node's local neighborhood or from the whole graph. The most basic and commonly used aggregation approach is to take the sum of information from a node's local neighbourhood or from the whole graph. However, it is unknown if the dominant information is from a node itself or from the node's neighbours (or the rest of the graph nodes). Therefore, there exists information lost at each layer of embedding generation, and this information lost could be accumulated and become more serious when more layers are used in the model. In this paper, we present a differential encoding method to address the issue of information lost. The idea of our method is to encode the differential representation between the information from a node's neighbours (or the rest of the graph nodes) and that from the node itself. The obtained differential encoding is then combined with the original aggregated local or global representation to generate the updated node embedding. By integrating differential encodings, the representational ability of generated node embeddings is improved. The differential encoding method is empirically evaluated on different graph tasks on seven benchmark datasets. The results show that it is a general method that improves the message-passing update and the global attention update, advancing the state-of-the-art performance for graph representation learning on these datasets.

Drug target binding affinity (DTA) is a key criterion for drug screening. Existing experimental methods are time-consuming and rely on limited structural and domain information. While learning-based methods can model sequence and structural information, they struggle to integrate contextual data and often lack comprehensive modeling of drug-target interactions. In this study, we propose a novel DTA prediction method, termed HGTDP-DTA, which utilizes dynamic prompts within a hybrid Graph-Transformer framework. Our method generates context-specific prompts for each drug-target pair, enhancing the model's ability to capture unique interactions. The introduction of prompt tuning further optimizes the prediction process by filtering out irrelevant noise and emphasizing task-relevant information, dynamically adjusting the input features of the molecular graph. The proposed hybrid Graph-Transformer architecture combines structural information from Graph Convolutional Networks (GCNs) with sequence information captured by Transformers, facilitating the interaction between global and local information. Additionally, we adopted the multi-view feature fusion method to project molecular graph views and affinity subgraph views into a common feature space, effectively combining structural and contextual information. Experiments on two widely used public datasets, Davis and KIBA, show that HGTDP-DTA outperforms state-of-the-art DTA prediction methods in both prediction performance and generalization ability.

Cryo-Electron Tomography (cryo-ET) is a 3D imaging technology facilitating the study of macromolecular structures at near-atomic resolution. Recent volumetric segmentation approaches on cryo-ET images have drawn widespread interest in biological sector. However, existing methods heavily rely on manually labeled data, which requires highly professional skills, thereby hindering the adoption of fully-supervised approaches for cryo-ET images. Some unsupervised domain adaptation (UDA) approaches have been designed to enhance the segmentation network performance using unlabeled data. However, applying these methods directly to cryo-ET images segmentation tasks remains challenging due to two main issues: 1) the source data, usually obtained through simulation, contain a certain level of noise, while the target data, directly collected from raw-data from real-world scenario, have unpredictable noise levels. 2) the source data used for training typically consists of known macromoleculars, while the target domain data are often unknown, causing the model's segmenter to be biased towards these known macromolecules, leading to a domain shift problem. To address these challenges, in this work, we introduce the first voxel-wise unsupervised domain adaptation approach, termed Vox-UDA, specifically for cryo-ET subtomogram segmentation. Vox-UDA incorporates a noise generation module to simulate target-like noises in the source dataset for cross-noise level adaptation. Additionally, we propose a denoised pseudo-labeling strategy based on improved Bilateral Filter to alleviate the domain shift problem. Experimental results on both simulated and real cryo-ET subtomogram datasets demonstrate the superiority of our proposed approach compared to state-of-the-art UDA methods., Comment: 11 pages

We propose a new testing framework applicable to both the two-sample problem on point processes and the community detection problem on rectangular arrays of point processes, which we refer to as longitudinal networks; the latter problem is useful in situations where we observe interactions among a group of individuals over time. Our framework is based on a multiscale discretization scheme that consider not just the global null but also a collection of nulls local to small regions in the domain; in the two-sample problem, the local rejections tell us where the intensity functions differ and in the longitudinal network problem, the local rejections tell us when the community structure is most salient. We provide theoretical analysis for the two-sample problem and show that our method has minimax optimal power under a Holder continuity condition. We provide extensive simulation and real data analysis demonstrating the practicality of our proposed method., Comment: 59 pages, 9 figures

Video anomaly detection aims to develop automated models capable of identifying abnormal events in surveillance videos. The benchmark setup for this task is extremely challenging due to: i) the limited size of the training sets, ii) weak supervision provided in terms of video-level labels, and iii) intrinsic class imbalance induced by the scarcity of abnormal events. In this work, we show that distilling knowledge from aggregated representations of multiple backbones into a relatively simple model achieves state-of-the-art performance. In particular, we develop a bi-level distillation approach along with a novel disentangled cross-attention-based feature aggregation network. Our proposed approach, DAKD (Distilling Aggregated Knowledge with Disentangled Attention), demonstrates superior performance compared to existing methods across multiple benchmark datasets. Notably, we achieve significant improvements of 1.36%, 0.78%, and 7.02% on the UCF-Crime, ShanghaiTech, and XD-Violence datasets, respectively.

Unsupervised disentanglement of content and transformation has recently drawn much research, given their efficacy in solving downstream unsupervised tasks like clustering, alignment, and shape analysis. This problem is particularly important for analyzing shape-focused real-world scientific image datasets, given their significant relevance to downstream tasks. The existing works address the problem by explicitly parameterizing the transformation factors, significantly reducing their expressiveness. Moreover, they are not applicable in cases where transformations can not be readily parametrized. An alternative to such explicit approaches is self-supervised methods with data augmentation, which implicitly disentangles transformations and content. We demonstrate that the existing self-supervised methods with data augmentation result in the poor disentanglement of content and transformations in real-world scenarios. Therefore, we developed a novel self-supervised method, DualContrast, specifically for unsupervised disentanglement of content and transformations in shape-focused image datasets. Our extensive experiments showcase the superiority of DualContrast over existing self-supervised and explicit parameterization approaches. We leveraged DualContrast to disentangle protein identities and protein conformations in cellular 3D protein images. Moreover, we also disentangled transformations in MNIST, viewpoint in the Linemod Object dataset, and human movement deformation in the Starmen dataset as transformations using DualContrast.

Remarkable strides have been made in reconstructing static scenes or human bodies from monocular videos. Yet, the two problems have largely been approached independently, without much synergy. Most visual SLAM methods can only reconstruct camera trajectories and scene structures up to scale, while most HMR methods reconstruct human meshes in metric scale but fall short in reasoning with cameras and scenes. This work introduces Synergistic Camera and Human Reconstruction (SynCHMR) to marry the best of both worlds. Specifically, we design Human-aware Metric SLAM to reconstruct metric-scale camera poses and scene point clouds using camera-frame HMR as a strong prior, addressing depth, scale, and dynamic ambiguities. Conditioning on the dense scene recovered, we further learn a Scene-aware SMPL Denoiser to enhance world-frame HMR by incorporating spatio-temporal coherency and dynamic scene constraints. Together, they lead to consistent reconstructions of camera trajectories, human meshes, and dense scene point clouds in a common world frame. Project page: https://paulchhuang.github.io/synchmr, Comment: CVPR 2024

In the field of medical decision-making, precise anomaly detection in medical imaging plays a pivotal role in aiding clinicians. However, previous work is reliant on large-scale datasets for training anomaly detection models, which increases the development cost. This paper first focuses on the task of medical image anomaly detection in the few-shot setting, which is critically significant for the medical field where data collection and annotation are both very expensive. We propose an innovative approach, MediCLIP, which adapts the CLIP model to few-shot medical image anomaly detection through self-supervised fine-tuning. Although CLIP, as a vision-language model, demonstrates outstanding zero-/fewshot performance on various downstream tasks, it still falls short in the anomaly detection of medical images. To address this, we design a series of medical image anomaly synthesis tasks to simulate common disease patterns in medical imaging, transferring the powerful generalization capabilities of CLIP to the task of medical image anomaly detection. When only few-shot normal medical images are provided, MediCLIP achieves state-of-the-art performance in anomaly detection and location compared to other methods. Extensive experiments on three distinct medical anomaly detection tasks have demonstrated the superiority of our approach. The code is available at https://github.com/cnulab/MediCLIP., Comment: 12 pages, 3 figures, 5 tables, early accepted at MICCAI 2024

Graph neural networks (GNNs) have shown great success in learning from graph-based data. The key mechanism of current GNNs is message passing, where a node's feature is updated based on the information passing from its local neighbourhood. A limitation of this mechanism is that node features become increasingly dominated by the information aggregated from the neighbourhood as we use more rounds of message passing. Consequently, as the GNN layers become deeper, adjacent node features tends to be similar, making it more difficult for GNNs to distinguish adjacent nodes, thereby, limiting the performance of GNNs. In this paper, we propose conditional local feature encoding (CLFE) to help prevent the problem of node features being dominated by the information from local neighbourhood. The idea of our method is to extract the node hidden state embedding from message passing process and concatenate it with the nodes feature from previous stage, then we utilise linear transformation to form a CLFE based on the concatenated vector. The CLFE will form the layer output to better preserve node-specific information, thus help to improve the performance of GNN models. To verify the feasibility of our method, we conducted extensive experiments on seven benchmark datasets for four graph domain tasks: super-pixel graph classification, node classification, link prediction, and graph regression. The experimental results consistently demonstrate that our method improves model performance across a variety of baseline GNN models for all four tasks., Comment: 11 pages

Retrieval-augmented generation (RAG) for language models significantly improves language understanding systems. The basic retrieval-then-read pipeline of response generation has evolved into a more extended process due to the integration of various components, sometimes even forming loop structures. Despite its advancements in improving response accuracy, challenges like poor retrieval quality for complex questions that require the search of multifaceted semantic information, inefficiencies in knowledge re-retrieval during long-term serving, and lack of personalized responses persist. Motivated by transcending these limitations, we introduce ERAGent, a cutting-edge framework that embodies an advancement in the RAG area. Our contribution is the introduction of the synergistically operated module: Enhanced Question Rewriter and Knowledge Filter, for better retrieval quality. Retrieval Trigger is incorporated to curtail extraneous external knowledge retrieval without sacrificing response quality. ERAGent also personalizes responses by incorporating a learned user profile. The efficiency and personalization characteristics of ERAGent are supported by the Experiential Learner module which makes the AI assistant being capable of expanding its knowledge and modeling user profile incrementally. Rigorous evaluations across six datasets and three question-answering tasks prove ERAGent's superior accuracy, efficiency, and personalization, emphasizing its potential to advance the RAG field and its applicability in practical systems., Comment: Draft Paper

Recently tellurium (Te) has attracted resurgent interests due to its p-type characteristics and outstanding ambient environmental stability. Here we present a substrate engineering based physical vapor deposition method to synthesize high-quality Te nanoflakes and achieved a field-effect hole mobility of 1500 cm2/Vs, which is, to the best of our knowledge, the highest among the existing synthesized van der Waals p-type semiconductors. The high mobility Te enables the fabrication of Te/MoS2 pn diodes with highly gate-tunable electronic and optoelectronic characteristics. The Te/MoS2 heterostructure can be used as a visible range photodetector with a current responsivity up to 630 A/W, which is about one order of magnitude higher than the one achieved using p-type Si-MoS2 PN photodiodes. The photo response of the Te/MoS2 heterojunction also exhibits strong gate tunability due to their ultrathin thickness and unique band structures. The successful synthesis of high mobility Te and the enabled Te/MoS2 photodiodes show promise for the development of highly tunable and ultrathin photodetectors.

Message passing has become the dominant framework in graph representation learning. The essential idea of the message-passing framework is to update node embeddings based on the information aggregated from local neighbours. However, most existing aggregation methods have not encoded neighbour-level message interactions into the aggregated message, resulting in an information lost in embedding generation. And this information lost could be accumulated and become more serious as more layers are added to the graph network model. To address this issue, we propose a neighbour-level message interaction information encoding method for improving graph representation learning. For messages that are aggregated at a node, we explicitly generate an encoding between each message and the rest messages using an encoding function. Then we aggregate these learned encodings and take the sum of the aggregated encoding and the aggregated message to update the embedding for the node. By this way, neighbour-level message interaction information is integrated into the generated node embeddings. The proposed encoding method is a generic method which can be integrated into message-passing graph convolutional networks. Extensive experiments are conducted on six popular benchmark datasets across four highly-demanded tasks. The results show that integrating neighbour-level message interactions achieves improved performance of the base models, advancing the state of the art results for representation learning over graphs., Comment: 10 pages

Studies continually find that message-passing graph convolutional networks suffer from the over-smoothing issue. Basically, the issue of over-smoothing refers to the phenomenon that the learned embeddings for all nodes can become very similar to one another and therefore are uninformative after repeatedly applying message passing iterations. Intuitively, we can expect the generated embeddings become smooth asymptotically layerwisely, that is each layer of graph convolution generates a smoothed version of embeddings as compared to that generated by the previous layer. Based on this intuition, we propose RandAlign, a stochastic regularization method for graph convolutional networks. The idea of RandAlign is to randomly align the learned embedding for each node with that of the previous layer using randomly interpolation in each graph convolution layer. Through alignment, the smoothness of the generated embeddings is explicitly reduced. To better maintain the benefit yielded by the graph convolution, in the alignment step we introduce to first scale the embedding of the previous layer to the same norm as the generated embedding and then perform random interpolation for aligning the generated embedding. RandAlign is a parameter-free method and can be directly applied without introducing additional trainable weights or hyper-parameters. We experimentally evaluate RandAlign on different graph domain tasks on seven benchmark datasets. The experimental results show that RandAlign is a general method that improves the generalization performance of various graph convolutional network models and also improves the numerical stability of optimization, advancing the state of the art performance for graph representation learning., Comment: 10 pages

Cryo-electron microscopy (cryo-EM) emerges as a pivotal technology for determining the architecture of cells, viruses, and protein assemblies at near-atomic resolution. Traditional particle picking, a key step in cryo-EM, struggles with manual effort and automated methods' sensitivity to low signal-to-noise ratio (SNR) and varied particle orientations. Furthermore, existing neural network (NN)-based approaches often require extensive labeled datasets, limiting their practicality. To overcome these obstacles, we introduce cryoMAE, a novel approach based on few-shot learning that harnesses the capabilities of Masked Autoencoders (MAE) to enable efficient selection of single particles in cryo-EM images. Contrary to conventional NN-based techniques, cryoMAE requires only a minimal set of positive particle images for training yet demonstrates high performance in particle detection. Furthermore, the implementation of a self-cross similarity loss ensures distinct features for particle and background regions, thereby enhancing the discrimination capability of cryoMAE. Experiments on large-scale cryo-EM datasets show that cryoMAE outperforms existing state-of-the-art (SOTA) methods, improving 3D reconstruction resolution by up to 22.4%.