85 results on '"Xoconostle-Cázares B"'
Search Results
2. First Report of Xanthomonas phaseoli pv. dieffenbachiae Causing Bacterial Leaf Blight on Anthurium andreanum in Mexico
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Flores-López, L., primary, Morales-Galván, O., additional, Cando-Narváez, A., additional, Barreto-Turiján, J., additional, Xoconostle-Cázares, B., additional, and Castro-Cassagnon, E., additional
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- 2020
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3. Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter
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Duplat-Bermúdez, L., primary, Ruiz-Medrano, R., additional, Landsman, D., additional, Mariño-Ramírez, L., additional, and Xoconostle-Cázares, B., additional
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- 2016
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4. Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering
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Duplat-Bermúdez, L., primary, Ruiz-Medrano, R., additional, Landsman, D., additional, Mariño-Ramírez, L., additional, and Xoconostle-Cázares, B., additional
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- 2016
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5. Changes in elemental content in fronds of Azolla filiculoides due to arsenic accumulation
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Sánchez-Viveros, G., primary, Ruvalcaba-Sil, J. L., additional, Ferrera-Cerrato, R., additional, Alarcón, A., additional, and Xoconostle-Cázares, B., additional
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- 2015
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6. Detección de Candida glabrata en mujeres mexicanas sanas y con candidiasis vulvovaginal recurrente.
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Pineda-Díaz, J., Gómez-M eraz, Y., Xoconostle-Cázares, B., and García-Mena, J.
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CANDIDAPEPSIN ,CANDIDIASIS ,CANDIDA albicans ,DIAGNOSTIC use of polymerase chain reaction ,DISEASES in women - Abstract
Copyright of Ginecología y Obstetricia de México is the property of Federacion Mexicana de Ginecologia y Obstetricia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2017
7. Acetosyringone induces the accumulation of a set of RNAs in the Arbuscular Mycorrhiza fungus Glomus intraradices
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Flores-Gomez, Estela, Gomez-Silva, Lidia, Ruiz-Medrano, R., Xoconostle-Cázares, B., Flores-Gomez, Estela, Gomez-Silva, Lidia, Ruiz-Medrano, R., and Xoconostle-Cázares, B.
- Abstract
Plant root exudates contain a range of low molecular weight metabolites, which are believed to trigger the structural and physiological changes associated with the progression and establishment of the mycorrhizal symbiosis. Glomus intraradices spores were incubated with acetosyringone (AS), and an overall increase in the hyphal respiration was observed, indicating a physiological response triggered by this plant regulator. A G. intraradices cDNA library was then screened with a total cDNA probe obtained from the AS-treated spores and mycelium. The cDNAs from different functional categories were identified as induced in G. intraradices when exposed to AS, such as protein synthesis, membrane transport, signal transduction, general metabolism, without assigned function, and no identity. Interestingly, a cDNA coding for a fragment of a histidine kinase was also induced by AS, suggesting a two-component mediated response. We also demonstrated the differential accumulation of a cruciform DNA-binding protein mRNA, termed as GiBP1. Time-course experiments demonstrated its rapid accumulation within 2h of induction with AS. These results indicate the presence of a set of fungal genes that are induced by the presence of the inducer. These findings are discussed in terms of the possible molecular events that follow the exchange of signals between the mycorrhizal symbionts.
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- 2010
8. Changes in elemental content in fronds of Azolla filiculoides due to arsenic accumulation.
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Sánchez-Viveros, G., Ruvalcaba-Sil, J. L., Ferrera-Cerrato, R., Alarcón, A., and Xoconostle-Cázares, B.
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AZOLLA filiculoides ,EFFECT of arsenic on plants ,BIOACCUMULATION in plants ,PLANT growth ,PLANT nutrients - Abstract
This study analyzed the accumulation of arsenic and its influence on the content of P, Mn, Fe, Cu, Zn, S, Ca, Cl, and K in fronds ofAzolla filiculoidesvia X-ray fluorescence (XRF).Azollawas exposed to increased concentrations of sodium arsenate (0, 5, 10, 20, and 30 μg ml − 1) in Yoshida's nutrient solution. After 96 h, fronds were collected and taken to constant weight to calculate the relative growth rate (RGR), the biomass duplication rate, the bioaccumulation factor (BAF), and the elemental concentration via XRF analysis. By increasing As concentrations the RGR and BAF were reduced. The greatest accumulation of As in fronds was achieved at 20 μg As ml − 1, which did not show significant differences with the highest concentration. Accumulation of As in fronds diminished concentrations of Mn, Fe, Zn, S, Ca, and K, while the concentration of P remained low but unchanging. The P content was significantly lower than the As content, thus the As:P ratio in fronds enhanced as the As concentration increased. Concentrations of Cl and Cu were unaffected due to As. This is one of the first reports about the influence of As-accumulation on the elemental content inAzollafronds. [ABSTRACT FROM PUBLISHER]
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- 2016
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9. Tissue-specific and developmental pattern of expression of the rice sps1 gene.
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Chávez-Bárcenas, A T, Valdez-Alarcón, J J, Martínez-Trujillo, M, Chen, L, Xoconostle-Cázares, B, Lucas, W J, and Herrera-Estrella, L
- Abstract
Sucrose-phosphate synthase (SPS) is one of the key regulatory enzymes in carbon assimilation and partitioning in plants. SPS plays a central role in the production of sucrose in photosynthetic cells and in the conversion of starch or fatty acids into sucrose in germinating seeds. To explore the mechanisms that regulate the tissue-specific and developmental distribution of SPS, the expression pattern of rice (Oryza sativa) sps1 (GenBank accession no. U33175) was examined by in situ reverse transcriptase-polymerase chain reaction and the expression directed by the sps1 promoter using the beta-glucuronidase reporter gene. It was found that the expression of the rice sps1 gene is limited to mesophyll cells in leaves, the scutellum of germinating seedlings, and pollen of immature inflorescences. During leaf development, the sps1 promoter directs a basipetal pattern of expression that coincides with the distribution of SPS activity during the leaf sink-to-source transition. It was also found that during the vegetative part of the growth cycle, SPS expression and enzymatic activity are highest in the youngest fully expanded leaf. Additionally, it was observed that the expression of the sps1 promoter is regulated by light and dependent on plastid development in photosynthetic tissues, whereas expression in scutellum is independent of both light and plastid development.
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- 2000
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10. Phloem long-distance transport of CmNACP mRNA: implications for supracellular regulation in plants.
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Ruiz-Medrano, R, Xoconostle-Cázares, B, and Lucas, W J
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Direct support for the concept that RNA molecules circulate throughout the plant, via the phloem, is provided through the characterisation of mRNA from phloem sap of mature pumpkin (Cucurbita maxima) leaves and stems. One of these mRNAs, CmNACP, is a member of the NAC domain gene family, some of whose members have been shown to be involved in apical meristem development. In situ RT-PCR analysis revealed the presence of CmNACP RNA in the companion cell-sieve element complex of leaf, stem and root phloem. Longitudinal and transverse sections showed continuity of transcript distribution between meristems and sieve elements of the protophloem, suggesting CmNACP mRNA transport over long distances and accumulation in vegetative, root and floral meristems. In situ hybridization studies conducted on CmNACP confirmed the results obtained using in situ RT-PCR. Phloem transport of CmNACP mRNA was proved directly by heterograft studies between pumpkin and cucumber plants, in which CmNACP transcripts were shown to accumulate in cucumber scion phloem and apical tissues. Similar experiments were conducted with 7 additional phloem-related transcripts. Collectively, these studies established the existence of a system for the delivery of specific mRNA transcripts from the body of the plant to the shoot apex. These findings provide insight into the presence of a novel mechanism likely used by higher plants to integrate developmental and physiological processes on a whole-plant basis.
- Published
- 1999
11. Geminivirus mixed infection on pepper plants: Synergistic interaction between PHYVV and PepGMV
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Rivera-Bustamante Rafael F, Ruiz-Medrano Roberto, Xoconostle-Cázares Beatriz, and Rentería-Canett Ilenia
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Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background PHYVV and PepGMV are plant viruses reported in Mexico and Southern US as causal agents of an important pepper disease known as "rizado amarillo". Mixed infections with PHYVV and PepGMV have been reported in several hosts over a wide geographic area. Previous work suggested that these viruses might interact at the replication and/or movement level in a complex manner. The aim of present report was to study some aspects of a synergistic interaction between PHYVV and PepGMV in pepper plants. These include analyses of symptom severity, viral DNA concentration and tissue localization of both viruses in single and mixed infections. Results Mixed infections with PepGMV and PHYVV induced symptoms more severe than those observed in single viral infections. Whereas plants infected with either virus (single infection) presented a remission stage with a corresponding decrease in viral DNA levels, double-infected plants did not present symptom remission and both viral DNA concentrations dramatically increased. In situ hybridization experiments revealed that both viruses are restricted to the vascular tissue. Interestingly, the amount of viral DNA detected was higher in plants inoculated with PepGMV than that observed in PHYVV-infected plants. During mixed infections, the location of both viruses remained similar to the one observed in single infections, although the number of infected cells increases. Infections with the tripartite mixture PHYVV (A+B) + PepGMV A produced a similar synergistic infection to the one observed after inoculation with both full viruses. On the contrary, tripartite mixture PepGMV (A+B) + PHYVV A did not produce a synergistic interaction. In an attempt to study the contribution of individual genes to the synergism, several mutants of PHYVV or PepGMV were inoculated in combination with the corresponding wild type, second virus (wt PepGMV or wt PHYVV). All combinations tested resulted in synergistic infections, with exception of the TrAP mutant of PepGMV (PepGMV TrAP-) + PHYVV. Conclusion In this report, we have demonstrated that synergistic interaction between PHYVV and PepGMV during a mixed infection is mainly due to an increased DNA concentration of both viruses, without any noticeable effect on the localization of either virus on infected plant tissue. Our results have shown that the viral component A from PepGMV is important for synergism during PHYVV-PepGMV mixed infections.
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- 2011
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12. Advances in Soybean Genetic Improvement.
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Vargas-Almendra A, Ruiz-Medrano R, Núñez-Muñoz LA, Ramírez-Pool JA, Calderón-Pérez B, and Xoconostle-Cázares B
- Abstract
The soybean ( Glycine max ) is a globally important crop due to its high protein and oil content, which serves as a key resource for human and animal nutrition, as well as bioenergy production. This review assesses recent advancements in soybean genetic improvement by conducting an extensive literature analysis focusing on enhancing resistance to biotic and abiotic stresses, improving nutritional profiles, and optimizing yield. We also describe the progress in breeding techniques, including traditional approaches, marker-assisted selection, and biotechnological innovations such as genetic engineering and genome editing. The development of transgenic soybean cultivars through Agrobacterium -mediated transformation and biolistic methods aims to introduce traits such as herbicide resistance, pest tolerance, and improved oil composition. However, challenges remain, particularly with respect to genotype recalcitrance to transformation, plant regeneration, and regulatory hurdles. In addition, we examined how wild soybean germplasm and polyploidy contribute to expanding genetic diversity as well as the influence of epigenetic processes and microbiome on stress tolerance. These genetic innovations are crucial for addressing the increasing global demand for soybeans, while mitigating the effects of climate change and environmental stressors. The integration of molecular breeding strategies with sustainable agricultural practices offers a pathway for developing more resilient and productive soybean varieties, thereby contributing to global food security and agricultural sustainability.
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- 2024
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13. Metagenomic Analysis of Rhizospheric Bacterial Community of Citrus Trees Expressing Phloem-Directed Antimicrobials.
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Núñez-Muñoz LA, Sánchez-García ME, Calderón-Pérez B, De la Torre-Almaraz R, Ruiz-Medrano R, and Xoconostle-Cázares B
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- Plants, Genetically Modified microbiology, Plants, Genetically Modified genetics, Phylogeny, Metagenomics, Muramidase metabolism, Muramidase genetics, Plant Proteins genetics, Plant Proteins metabolism, beta-Defensins genetics, RNA, Ribosomal, 16S genetics, Anti-Infective Agents pharmacology, Anti-Infective Agents metabolism, Citrus sinensis microbiology, Plant Roots microbiology, Rhizosphere, Phloem microbiology, Phloem metabolism, Soil Microbiology, Bacteria genetics, Bacteria classification, Bacteria metabolism, Bacteria isolation & purification, Microbiota, Plant Diseases microbiology, Citrus microbiology
- Abstract
Huanglongbing, also known as citrus greening, is currently the most devastating citrus disease with limited success in prevention and mitigation. A promising strategy for Huanglongbing control is the use of antimicrobials fused to a carrier protein (phloem protein of 16 kDa or PP16) that targets vascular tissues. This study investigated the effects of genetically modified citrus trees expressing Citrus sinensis PP16 (CsPP16) fused to human lysozyme and β-defensin-2 on the soil microbiome diversity using 16S amplicon analysis. The results indicated that there were no significant alterations in alpha diversity, beta diversity, phylogenetic diversity, differential abundance, or functional prediction between the antimicrobial phloem-overexpressing plants and the control group, suggesting minimal impact on microbial community structure. However, microbiota diversity analysis revealed distinct bacterial assemblages between the rhizosphere soil and root environments. This study helps to understand the ecological implications of crops expressing phloem-targeted antimicrobials for vascular disease management, with minimal impact on soil microbiota., (© 2024. The Author(s).)
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- 2024
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14. Evolutionary and Structural Analysis of PP16 in Viridiplantae.
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Jiménez-López D, Xoconostle-Cázares B, Calderón-Pérez B, Vargas-Hernández BY, Núñez-Muñoz LA, Ramírez-Pool JA, and Ruiz-Medrano R
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- Phloem metabolism, Plants metabolism, Biological Transport, Plant Proteins genetics, Viridiplantae metabolism
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Members of the phloem protein 16 (PP16) gene family are induced by elicitors in rice and the corresponding proteins from cucurbits, which display RNA binding and intercellular transport activities, are accumulated in phloem sap. These proteins facilitate the movement of protein complexes through the phloem translocation flow and may be involved in the response to water deficit, among other functions. However, there is scant information regarding their function in other plants, including the identification of paralog genes in non-vascular plants and chlorophytes. In the present work, an evolutionary and structural analysis of the PP16 family in green plants (Viridiplantae) was carried out. Data mining in different databases indicated that PP16 likely originated from a larger gene present in an ancestral lineage that gave rise to chlorophytes and multicellular plants. This gene encodes a protein related to synaptotagmin, which is involved in vesicular transport in animal systems, although other members of this family play a role in lipid turnover in endomembranes and organelles. These proteins contain a membrane-binding C2 domain shared with PP16 proteins in vascular plants. In silico analysis of the predicted structure of the PP16 protein family identified several β-sheets, one α-helix, and intrinsically disordered regions. PP16 may have been originally involved in vesicular trafficking and/or membrane maintenance but specialized in long-distance signaling during the emergence of the plant vascular system.
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- 2024
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15. The Characterization of Melanaphis sacchari Microbiota and Antibiotic Treatment Effect on Insects.
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Xoconostle-Cázares B, Ramírez-Pool JA, Núñez-Muñoz LA, Calderón-Pérez B, Vargas-Hernández BY, Bujanos-Muñiz R, and Ruiz-Medrano R
- Abstract
Insects are under constant selective pressure, which has resulted in adaptations to novel niches such as crops. This is the case of the pest Melanaphis sacchari , the sugarcane aphid, native to Africa and currently spreading worldwide. The aphid undergoes successful parthenogenesis, causing important damage to a variety of crops and leading to important economic losses for farmers. A natural M. sacchari population grown in sorghum was studied to identify its microbiome through the sequencing of its 16S rDNA metagenome. A high proportion of Proteobacteria, followed by Firmicutes, Bacteroidetes, and Actinobacteria, was observed. We also detected Wolbachia , which correlates with the asexual reproduction of its host. M. sacchari was challenged in a bioassay with the antibiotics oxytetracycline and streptomycin, resulting in a dose-dependent decay of its survival rate. The possibility of controlling this pest by altering its microbiota is proposed.
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- 2023
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16. Ouabain Induces Transcript Changes and Activation of RhoA/ROCK Signaling in Cultured Epithelial Cells (MDCK).
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Martínez-Rendón J, Hinojosa L, Xoconostle-Cázares B, Ramírez-Pool JA, Castillo A, Cereijido M, and Ponce A
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Ouabain, an organic compound with the ability to strengthen the contraction of the heart muscle, was originally derived from plants. It has been observed that certain mammalian species, including humans, naturally produce ouabain, leading to its classification as a new type of hormone. When ouabain binds to Na
+ /K+ -ATPase, it elicits various physiological effects, although these effects are not well characterized. Previous studies have demonstrated that ouabain, within the concentration range found naturally in the body (10 nmol/L), affects the polarity of epithelial cells and their intercellular contacts, such as tight junctions, adherens junctions, and gap junctional communication. This is achieved by activating signaling pathways involving cSrc and Erk1/2. To further investigate the effects of ouabain within the hormonally relevant concentration range (10 nmol/L), mRNA-seq, a high-throughput sequencing technique, was employed to identify differentially expressed transcripts. The discovery that the transcript encoding MYO9A was among the genes affected prompted an exploration of whether RhoA and its downstream effector ROCK were involved in the signaling pathways through which ouabain influences cell-to-cell contacts in epithelial cells. Supporting this hypothesis, this study reveals the following: (1) Ouabain increases the activation of RhoA. (2) Treatment with inhibitors of RhoA activation (Y27) and ROCK (C3) eliminates the enhancing effect of ouabain on the tight junction seal and intercellular communication via gap junctions. These findings further support the notion that ouabain acts as a hormone to emphasize the epithelial phenotype.- Published
- 2023
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17. Long-Distance Movement of Solanum tuberosum Translationally Controlled Tumor Protein ( StTCTP ) mRNA.
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Xoconostle-Morán BB, Xoconostle-Cázares B, Vargas-Hernández BY, Núñez-Muñoz LA, Calderón-Pérez B, and Ruiz-Medrano R
- Abstract
Long-distance signaling molecules in plants, including different RNA species, play a crucial role in the development and environmental responses. Among these mobile signals, the Translationally Controlled Tumor Protein (TCTP) mRNA is one of the most abundant. TCTP regulates cell-cycle progression and programmed cell death and is involved in responses to abiotic and biotic stress as well as plant regeneration, among other functions. Considering that the ability to induce plant regeneration is linked to a possible role of TCTP in vegetative propagation and asexual reproduction, we analyzed TCTP overexpression in a solanaceous plant model that can reproduce asexually by regeneration from stolons and tubers. Therefore, in this study, the effect of transient expression of Solanum tuberosum TCTP ( StTCTP ) on tuber development and vegetative propagation was described. StTCTP mRNA was shown to be transported long-distance. Additionally, transient overexpression of StTCTP resulted in sprouts with a greater diameter compared to control plants. Furthermore, the early stages of tuberization were induced compared to control plants, in which only mature tubers were observed. These results suggest a role of TCTP in vegetative propagation and asexual reproduction.
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- 2023
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18. Starting from scratch: Step-by-step development of diagnostic tests for SARS-CoV-2 detection by RT-LAMP.
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Tapia-Sidas DA, Vargas-Hernández BY, Ramírez-Pool JA, Núñez-Muñoz LA, Calderón-Pérez B, González-González R, Brieba LG, Lira-Carmona R, Ferat-Osorio E, López-Macías C, Ruiz-Medrano R, and Xoconostle-Cázares B
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- Animals, Mice, Humans, Sensitivity and Specificity, Molecular Diagnostic Techniques methods, Nucleic Acid Amplification Techniques methods, Real-Time Polymerase Chain Reaction, Diagnostic Tests, Routine, RNA, Viral genetics, COVID-19 Testing, SARS-CoV-2 genetics, COVID-19 diagnosis
- Abstract
The pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has affected millions of people worldwide. Public health strategies to reduce viral transmission are based on widespread diagnostic testing to detect and isolate contagious patients. Several reverse transcription (RT)-PCR tests, along with other SARS-CoV-2 diagnostic assays, are available to attempt to cover the global demand. Loop-mediated isothermal amplification (LAMP) based methods have been established as rapid, accurate, point of care diagnostic tests for viral infections; hence, they represent an excellent alternative for SARS-CoV-2 detection. The aim of this study was to develop and describe molecular detection systems for SARS-CoV-2 based on RT-LAMP. Recombinant DNA polymerase from Bacillus stearothermophilus and thermostable engineered reverse transcriptase from Moloney Murine Leukemia Virus were expressed using a prokaryotic system and purified by fast protein liquid chromatography. These enzymes were used to set up fluorometric real time and colorimetric end-point RT-LAMP assays. Several reaction conditions were optimized such as reaction temperature, Tris-HCl concentration, and pH of the diagnostic tests. The key enzymes for RT-LAMP were purified and their enzymatic activity was determined. Standardized reaction conditions for both RT-LAMP assays were 65°C and a Tris-HCl-free buffer at pH 8.8. Colorimetric end-point RT-LAMP assay was successfully used for viral detection from clinical saliva samples with 100% sensitivity and 100% specificity compared to the results obtained by RT-qPCR based diagnostic protocols with Ct values until 30. The developed RT-LAMP diagnostic tests based on purified recombinant enzymes allowed a sensitive and specific detection of the nucleocapsid gene of SARS-CoV-2., Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: The detection using RT-LAMP was registered by Centro de Investigación y de Estudios Avanzados (CINVESTAV) to be protected as a patent. Biopure® is a registered trademark of CINVESTAV. This does not alter our adherence to PLOS ONE policies on sharing data and materials., (Copyright: © 2023 Tapia-Sidas et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
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19. Expression, purification, and refolding of the recombinant extracellular domain β 1 -subunit of the dog Na + /K + -ATPase of the epithelial cells.
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Roa-Velázquez D, Xoconostle-Cázares B, Benítez-Cardoza CG, Ortega-López J, Shoshani L, Morales-Ríos E, and Gallardo-Hernández S
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- Animals, Cell Adhesion Molecules metabolism, Cell Membrane metabolism, Dogs, Epithelial Cells, Recombinant Proteins genetics, Recombinant Proteins metabolism, Escherichia coli genetics, Escherichia coli metabolism, Sodium-Potassium-Exchanging ATPase chemistry, Sodium-Potassium-Exchanging ATPase genetics, Sodium-Potassium-Exchanging ATPase metabolism
- Abstract
The β
1 -subunit of the Na+ /K+ -ATPase is a cell membrane protein, beyond its classic functions, it is also a cell adhesion molecule. β1 -subunits on the lateral membrane of dog kidney epithelial cells trans-interact with β1 -subunits from another neighboring cells. The β-β interaction is essential for the formation and stabilization of intercellular junctions. Previous studies on site-directed mutagenesis and in silico revealed that the interaction interface involves residues 198-207 and 221-229. However, it is necessary to report the interaction interface at the structural level experimentally. Here, we describe the successful cloning, overexpression in E. coli, and purification of the extracellular domain of the β1 -subunit from inclusion bodies. Experimental characterization by size exclusion chromatography and DLS indicated similar hydrodynamic properties of the protein refolded. Structural analysis by circular dichroism and Raman spectroscopy revealed the secondary structures in the folded protein of type β-sheet, α-helix, random coil, and turn. We also performed β1 -β1 interaction assays with the recombinant protein, showing dimers' formation (6xHisβ1 -β1 ). Given our results, the recombinant extracellular domain of the β1 -subunit is highly similar to the native protein, therefore the current work in our laboratory aims to characterize at the atomic level the interaction interface between EDβ1 ., (Copyright © 2022 Elsevier Inc. All rights reserved.)- Published
- 2022
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20. Bioinformatic-based approach for mutagenesis of plant immune Tm-2 2 receptor to confer resistance against tomato brown rugose fruit virus (ToBRFV).
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Rivera-Márquez K, Núñez-Muñoz LA, Calderón-Pérez B, De La Torre-Almaraz R, Vargas-Hernández BY, Ruiz-Medrano R, and Xoconostle-Cázares B
- Abstract
Nucleotide-binding leucine-rich repeat (NLR) plant immune receptors mediate the recognition and activation of defense signaling pathways in response to intra- and extracellular pathogens. Several NLR such as Tm-2 and Tm-2
2 have been introgressed into commercial solanaceous varieties to confer protection against different tobamoviruses. Particularly, Tm-22 was used during recent decades to confer resistance against tobacco mosaic virus, tomato mottle mosaic virus and tomato mosaic virus, which recognizes the viral movement protein (MP). However, tomato brown rugose fruit virus(ToBRFV), a novel tobamovirus, can avoid the protection conferred by Tm-22 due to the presence of key substitutions in the MP. The aim of this work was to identify the key amino acid residues involved in the interaction between Tm-22 and ToBRFV MP through bioinformatic analyses, and to identify potential Tm-22 mutations that could generate greater binding affinity. In silico 3D structure prediction, molecular docking, and computational affinity methods were performed. We predicted that R350, H384 and K385 Tm-22 residues are relevant for the interaction with MP, and two mutations (H384W and K385L) were identified as putative sites to increase the affinity of Tm-22 to the MP with the potential elicitation of resistance against ToBRFV., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Rivera-Márquez, Núñez-Muñoz, Calderón-Pérez, De La Torre-Almaraz, Vargas-Hernández, Ruiz-Medrano and Xoconostle-Cázares.)- Published
- 2022
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21. Development of a droplet digital polymerase chain reaction (ddPCR) assay for the detection of Tomato brown rugose fruit virus (ToBRFV) in tomato and pepper seeds.
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Vargas-Hernández BY, Ramírez-Pool JA, Núñez-Muñoz LA, Calderón-Pérez B, De La Torre-Almaráz R, Hinojosa-Moya J, Xoconostle-Cázares B, and Ruiz-Medrano R
- Subjects
- Fruit, Plant Diseases, Polymerase Chain Reaction, Seeds, Solanum lycopersicum, Tobamovirus genetics
- Abstract
In the present study, a droplet digital PCR assay was developed for detection of Tomato brown rugose fruit virus, a new Tobamovirus of tomato and other solanaceous plants, which expands the diagnostic strategies for this pathogen. Candidate reference DNA material was also obtained to be employed as positive control in tomato and pepper samples. Recombinant plasmids encode for ToBRFV coat protein (CP-ToBRFV) gene and Solanum lycopersicum GAPDH fragments, and CP-ToBRFV and Capsicum annuum GAPDH. To our knowledge, this is the first report of ToBRFV detection in tomato and pepper seeds using ddPCR., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2022
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22. Combined Subcutaneous-Intranasal Immunization With Epitope-Based Antigens Elicits Binding and Neutralizing Antibody Responses in Serum and Mucosae Against PRRSV-2 and SARS-CoV-2.
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Fragoso-Saavedra M, Ramírez-Estudillo C, Peláez-González DL, Ramos-Flores JO, Torres-Franco G, Núñez-Muñoz L, Marcelino-Pérez G, Segura-Covarrubias MG, González-González R, Ruiz-Medrano R, Xoconostle-Cázares B, Gayosso-Vázquez A, Reyes-Maya S, Ramírez-Andoney V, Alonso-Morales RA, and Vega-López MA
- Subjects
- Animals, Antibodies, Neutralizing, Antibodies, Viral, Antibody Formation, Epitopes, Female, Immunization, SARS-CoV-2, Swine, Swine, Miniature, COVID-19 prevention & control, Porcine respiratory and reproductive syndrome virus, Viral Vaccines
- Abstract
New vaccine design approaches, platforms, and immunization strategies might foster antiviral mucosal effector and memory responses to reduce asymptomatic infection and transmission in vaccinated individuals. Here, we investigated a combined parenteral and mucosal immunization scheme to induce local and serum antibody responses, employing the epitope-based antigens 3BT and NG19m. These antigens target the important emerging and re-emerging viruses PRRSV-2 and SARS-CoV-2, respectively. We assessed two versions of the 3BT protein, which contains conserved epitopes from the GP5 envelope protein of PRRSV-2: soluble and expressed by the recombinant baculovirus BacDual-3BT. On the other hand, NG19m, comprising the receptor-binding motif of the S protein of SARS-CoV-2, was evaluated as a soluble recombinant protein only. Vietnamese mini-pigs were immunized employing different inoculation routes: subcutaneous, intranasal, or a combination of both (s.c.-i.n.). Animals produced antigen-binding and neut1ralizing antibodies in serum and mucosal fluids, with varying patterns of concentration and activity, depending on the antigen and the immunization schedule. Soluble 3BT was a potent immunogen to elicit binding and neutralizing antibodies in serum, nasal mucus, and vaginal swabs. The vectored immunogen BacDual-3BT induced binding antibodies in serum and mucosae, but PRRSV-2 neutralizing activity was found in nasal mucus exclusively when administered intranasally. NG19m promoted serum and mucosal binding antibodies, which showed differing neutralizing activity. Only serum samples from subcutaneously immunized animals inhibited RBD-ACE2 interaction, while mini-pigs inoculated intranasally or via the combined s.c.-i.n. scheme produced subtle neutralizing humoral responses in the upper and lower respiratory mucosae. Our results show that intranasal immunization, alone or combined with subcutaneous delivery of epitope-based antigens, generates local and systemic binding and neutralizing antibodies. Further investigation is needed to evaluate the capability of the induced responses to prevent infection and reduce transmission., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Fragoso-Saavedra, Ramírez-Estudillo, Peláez-González, Ramos-Flores, Torres-Franco, Núñez-Muñoz, Marcelino-Pérez, Segura-Covarrubias, González-González, Ruiz-Medrano, Xoconostle-Cázares, Gayosso-Vázquez, Reyes-Maya, Ramírez-Andoney, Alonso-Morales and Vega-López.)
- Published
- 2022
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23. Transcriptomic Analysis of the Host Response to Mild and Severe CTV Strains in Naturally Infected Citrus sinensis Orchards.
- Author
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Ramírez-Pool JA, Xoconostle-Cázares B, Calderón-Pérez B, Ibarra-Laclette E, Villafán E, Lira-Carmona R, and Ruiz-Medrano R
- Subjects
- Citrus sinensis genetics, Closterovirus genetics, Disease Resistance, Gene Expression Regulation, Plant, Gene Expression Regulation, Viral, Mexico, Plant Diseases genetics, Plant Diseases virology, Plant Viruses genetics, RNA-Seq, Virulence, Citrus sinensis virology, Closterovirus pathogenicity, Gene Expression Profiling methods, Plant Proteins genetics, Plant Viruses pathogenicity, Viral Proteins genetics
- Abstract
Citrus tristeza virus (CTV) is an important threat to the global citrus industry, causing severe economic losses worldwide. The disease management strategies are focused on vector control, tree culling, and the use of resistant varieties and rootstocks. Sweet orange ( Citrus sinensis ) trees showing either severe or mild CTV symptoms have been observed in orchards in Veracruz, Mexico, and were probably caused by different virus strains. To understand these symptomatic differences, transcriptomic analyses were conducted using asymptomatic trees. CTV was confirmed to be associated with infected plants, and mild and severe strains were successfully identified by a polymorphism in the coat protein (CP) encoding gene. RNA-Seq analysis revealed more than 900 significantly differentially expressed genes in response to mild and severe strains, with some overlapping genes. Importantly, multiple sequence reads corresponding to Citrus exocortis viroid and Hop stunt viroid were found in severe symptomatic and asymptomatic trees, but not in plants with mild symptoms. The differential gene expression profiling obtained in this work provides an overview of molecular behavior in naturally CTV-infected trees. This work may contribute to our understanding of citrus-virus interaction in more natural settings, which can help develop strategies for integrated crop management.
- Published
- 2022
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24. The NAC Transcription Factor ANAC087 Induces Aerial Rosette Development and Leaf Senescence in Arabidopsis.
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Vargas-Hernández BY, Núñez-Muñoz L, Calderón-Pérez B, Xoconostle-Cázares B, and Ruiz-Medrano R
- Abstract
CmNACP1 mRNA has been shown to move long distance through the phloem in Cucurbita maxima (pumpkin) and through a graft junction. Whereas the phloem transport of several different mRNAs has been documented in other systems as well, its function remains, for most of these RNAs, largely unknown. To gain insight into the possible role of these RNAs, we searched for the closest homologs of CmNACP1 in Arabidopsis, a model plant much more amenable for analysis. A phylogenetic approach using the predicted NAC domain indicated that ANAC059, ANAC092, ANAC079, ANAC100, ANAC046, and ANAC087 form a single clade with CmNACP1. In the present work, we analyzed the possible function of the ANAC087 gene in more detail. The promoter region of this gene directed expression in the vasculature, and also in trichomes, stem, apexes, and developing flowers which supports the notion that ANAC087 and CmNACP1 are orthologs. Overexpression of the ANAC087 gene induced increased branching in inflorescence stem, and also development of ectopic or aerial rosettes in T1 and T2 plants. Furthermore, overexpression of ANAC087 leads to accelerated leaf senescence in 44 days post-germination (dpg). Interestingly, a similar phenotype was observed in plants expressing the ANAC087 gene upstream region, also showing an increase in ANAC087 transcript levels. Finally, the results shown in this work indicate a role for ANAC087 in leaf senescence and also in rosette development., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Vargas-Hernández, Núñez-Muñoz, Calderón-Pérez, Xoconostle-Cázares and Ruiz-Medrano.)
- Published
- 2022
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25. Engineering Macromolecular Trafficking Into the Citrus Vasculature.
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Calderón-Pérez B, Ramírez-Pool JA, Núñez-Muñoz LA, Vargas-Hernández BY, Camacho-Romero A, Lara-Villamar M, Jiménez-López D, Xoconostle-Cázares B, and Ruiz-Medrano R
- Abstract
The plant vasculature is a central organ for long-distance transport of nutrients and signaling molecules that coordinate vegetative and reproductive processes, and adaptation response mechanisms to biotic and abiotic stress. In angiosperms, the sieve elements are devoid of nuclei, thus depending on the companion cells for the synthesis of RNA and proteins, which constitute some of the systemic signals that coordinate these processes. Massive analysis approaches have identified proteins and RNAs that could function as long-range signals in the phloem translocation stream. The selective translocation of such molecules could occur as ribonucleoprotein complexes. A key molecule facilitating this movement in Cucurbitaceae is the phloem protein CmPP16, which can facilitate the movement of RNA and other proteins into the sieve tube. The CmPP16 ortholog in Citrus CsPP16 was characterized in silico to determine its potential capacity to associate with other mobile proteins and its enrichment in the vascular tissue. The systemic nature of CsPP16 was approached by evaluating its capacity to provide phloem-mobile properties to antimicrobial peptides (AMPs), important in the innate immune defense. The engineering of macromolecular trafficking in the vasculature demonstrated the capacity to mobilize translationally fused peptides into the phloem stream for long-distance transport. The translocation into the phloem of AMPs could mitigate the growth of Candidatus Liberibacter asiaticus, with important implications for crop defense; this system also opens the possibility of translocating other molecules to modulate traits, such as plant growth, defense, and plant productivity., Competing Interests: A patent file was registered in the Mexican Institute for Intellectual Protection. The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Calderón-Pérez, Ramírez-Pool, Núñez-Muñoz, Vargas-Hernández, Camacho-Romero, Lara-Villamar, Jiménez-López, Xoconostle-Cázares and Ruiz-Medrano.)
- Published
- 2022
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26. Citrus Genetic Transformation: An Overview of the Current Strategies and Insights on the New Emerging Technologies.
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Conti G, Xoconostle-Cázares B, Marcelino-Pérez G, Hopp HE, and Reyes CA
- Abstract
Citrus are among the most prevailing fruit crops produced worldwide. The implementation of effective and reliable breeding programs is essential for coping with the increasing demands of satisfactory yield and quality of the fruit as well as to deal with the negative impact of fast-spreading diseases. Conventional methods are time-consuming and of difficult application because of inherent factors of citrus biology, such as their prolonged juvenile period and a complex reproductive stage, sometimes presenting infertility, self-incompatibility, parthenocarpy, or polyembryony. Moreover, certain desirable traits are absent from cultivated or wild citrus genotypes. All these features are challenging for the incorporation of the desirable traits. In this regard, genetic engineering technologies offer a series of alternative approaches that allow overcoming the difficulties of conventional breeding programs. This review gives a detailed overview of the currently used strategies for the development of genetically modified citrus. We describe different aspects regarding genotype varieties used, including elite cultivars or extensively used scions and rootstocks. Furthermore, we discuss technical aspects of citrus genetic transformation procedures via Agrobacterium , regular physical methods, and magnetofection. Finally, we describe the selection of explants considering young and mature tissues, protoplast isolation, etc. We also address current protocols and novel approaches for improving the in vitro regeneration process, which is an important bottleneck for citrus genetic transformation. This review also explores alternative emerging transformation strategies applied to citrus species such as transient and tissue localized transformation. New breeding technologies, including cisgenesis, intragenesis, and genome editing by clustered regularly interspaced short palindromic repeats (CRISPR), are also discussed. Other relevant aspects comprising new promoters and reporter genes, marker-free systems, and strategies for induction of early flowering, are also addressed. We provided a future perspective on the use of current and new technologies in citrus and its potential impact on regulatory processes., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Conti, Xoconostle-Cázares, Marcelino-Pérez, Hopp and Reyes.)
- Published
- 2021
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27. Adsorption of Recombinant Human β-Defensin 2 and Two Mutants on Mesoporous Silica Nanoparticles and Its Effect against Clavibacter michiganensis subsp. michiganensis .
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Marcelino-Pérez G, Ruiz-Medrano R, Gallardo-Hernández S, and Xoconostle-Cázares B
- Abstract
Solanum lycopersicum L. is affected among other pests and diseases, by the actinomycete Clavibacter michiganensis subsp. michiganensis ( Cmm ), causing important economic losses worldwide. Antimicrobial peptides (AMPs) are amphipathic cationic oligopeptides with which the development of pathogenic microorganisms has been inhibited. Therefore, in this study, we evaluate antimicrobial activity of mesoporous silica nanoparticles (MSN5.4) loaded with human β-defensin-2 (hβD2) and two mutants (TRX-hβD2-M and hβD2-M) against Cmm . hβD2, TRX-hβD2-M and hβD2-M presented a half-maximum inhibitory concentration (IC
50 ) of 3.64, 1.56 and 6.17 μg/mL, respectively. MSNs had average particle sizes of 140 nm (SEM) and a tunable pore diameter of 4.8 up to 5.4 nm (BJH). AMPs were adsorbed more than 99% into MSN and a first release after 24 h was observed. The MSN loaded with the AMPs inhibited the growth of Cmm in solid and liquid media. It was also determined that MSNs protect AMPs from enzymatic degradation when the MSN/AMPs complexes were exposed to a pepsin treatment. An improved AMP performance was registered when it was adsorbed in the mesoporous matrix. The present study could expand the applications of MSNs loaded with AMPs as a biological control and provide new tools for the management of phytopathogenic microorganisms.- Published
- 2021
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28. Recombinant Antigens Based on Non-Glycosylated Regions from RBD SARS-CoV-2 as Potential Vaccine Candidates against COVID-19.
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Núñez-Muñoz L, Marcelino-Pérez G, Calderón-Pérez B, Pérez-Saldívar M, Acosta-Virgen K, González-Conchillos H, Vargas-Hernández B, Olivares-Martínez A, Ruiz-Medrano R, Roa-Velázquez D, Morales-Ríos E, Ramos-Flores J, Torres-Franco G, Peláez-González D, Fernández-Hernández J, Espinosa-Cantellano M, Tapia-Sidas D, Ramírez-Pool JA, Padilla-Viveros A, and Xoconostle-Cázares B
- Abstract
The Receptor-Binding Domain (RBD) of the Spike (S) protein from Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has glycosylation sites which can limit the production of reliable antigens expressed in prokaryotic platforms, due to glycan-mediated evasion of the host immune response. However, protein regions without glycosylated residues capable of inducing neutralizing antibodies could be useful for antigen production in systems that do not carry the glycosylation machinery. To test this hypothesis, the potential antigens NG06 and NG19, located within the non-glycosylated S-RBD region, were selected and expressed in Escherichia coli , purified by FPLC and employed to determine their immunogenic potential through detection of antibodies in serum from immunized rabbits, mice, and COVID-19 patients. IgG antibodies from sera of COVID-19-recovered patients detected the recombinant antigens NG06 and NG19 (A
450 nm = 0.80 ± 0.33; 1.13 ± 0.33; and 0.11 ± 0.08 for and negatives controls, respectively). Also, the purified antigens were able to raise polyclonal antibodies in animal models evoking a strong immune response with neutralizing activity in mice model. This research highlights the usefulness of antigens based on the non-N-glycosylated region of RBD from SARS-CoV-2 for candidate vaccine development.- Published
- 2021
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29. An Ancestry Perspective of the Evolution of PBS1 Proteins in Plants.
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Villegas-Vázquez EY, Xoconostle-Cázares B, and Ruiz-Medrano R
- Subjects
- Amino Acid Sequence, Conserved Sequence, Gene Expression Regulation, Plant, Models, Molecular, Phylogeny, Plant Physiological Phenomena, Protein Conformation, Protein Serine-Threonine Kinases chemistry, Signal Transduction, Structure-Activity Relationship, Biological Evolution, Plant Proteins genetics, Plant Proteins metabolism, Plants genetics, Plants metabolism, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism
- Abstract
The AVRPPHB SUSCEPTIBLE1 (PBS1) and RESISTANCE TO PSEUDOMONAS SYRINGAE 5 (RPS5) proteins are involved in signal transduction to evoke innate plant immune response. In Arabidopsis, PBS1 is cleaved by the AvrPphB ( Pseudomonas phaseolicola Avirulence protein B) protease, activating RPS5 and turning in a hypersensitive response (HR). We searched for PBS1 orthologs to trace their origin and evolution. PBS1 orthologs were found in embryophytes and in other plant taxa but with lower similarity. PBS1 phylogenetic analysis indicates high divergence, suggesting that the decoy function described for Arabidopsis PBS1 might be associated with a small fraction of orthologs. Ancestral reconstruction analysis suggests an elevated diversity in the amino acid sequence within the described motifs. All the orthologs contain the conserved PBS1 kinase subdomains, whereas the cleavage motif is present in several embryophyte orthologs but absent in most other taxa. The putative resistance recognition motifs in PBS1 orthologs are highly diverse. PBS1 cleavage site motif is exposed in some 3D structure predictions, whereas it is not in others, suggesting different modes of regulation and functions in PBS1 orthologs. Our findings suggest that PBS1 originated in the lineage that gave rise to embryophytes, with the angiosperm sequences forming a separate clade from pteridophyte proteins.
- Published
- 2021
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30. Genetic Diversity of Xylella fastidiosa in Mexican Vineyards.
- Author
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Aguilar-Granados A, Hernández-Macías B, Santiago-Martínez G, Ruiz-Medrano R, Kameyama-Kawabe L, Hinojosa-Moya J, Del Carmen Montes-Horcasitas M, and Xoconostle-Cázares B
- Subjects
- Farms, Mexico, United States, Xylella, Genetic Variation, Plant Diseases
- Abstract
Xylella fastidiosa is a xylem-inhabiting phytopathogenic bacterium that affects diverse agriculturally relevant crops. In Mexico, X. fastidiosa has been reported in the states of Baja California, Coahuila, and Querétaro. In order to determine the genetic diversity of this bacterium in Mexico, 408 grapevine samples were collected from the main producing states in México. For X. fastidiosa identification, real-time PCR and three-loci end-point PCR were employed. The genotyping of the subspecies was carried out using multilocus sequence typing and analysis, based on seven housekeeping genes: leuA, petC, malF, cysG, holC, nuoL , and gltT. The resulting sequences were compared with those present in extant databases. The presence of X. fastidiosa subsp. fastidiosa in the states of Baja California (sequence type 1), Coahuila (sequence type 1), and Querétaro was confirmed. The isolates from northern Mexico bear high similarity to grapevine isolates from the United States. However, the isolates from Querétaro showed significant differences with currently known sequences, showing that there is genetic variability among the X. fastidiosa subsp. fastidiosa populations from grapevines in northern and central Mexico.
- Published
- 2021
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31. Plant drought tolerance provided through genome editing of the trehalase gene.
- Author
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Nuñez-Muñoz L, Vargas-Hernández B, Hinojosa-Moya J, Ruiz-Medrano R, and Xoconostle-Cázares B
- Subjects
- Amino Acid Sequence, Base Sequence, Computer Simulation, DNA, Bacterial genetics, Gene Expression Regulation, Plant, Gene Silencing, Genetic Vectors metabolism, Molecular Docking Simulation, Mutation genetics, Phenotype, Phylogeny, Plant Leaves genetics, Plants, Genetically Modified, Promoter Regions, Genetic genetics, Protein Domains, RNA, Guide, CRISPR-Cas Systems genetics, Substrate Specificity, Nicotiana genetics, Transformation, Genetic, Trehalase chemistry, Trehalase metabolism, Zea mays genetics, Adaptation, Physiological genetics, Arabidopsis genetics, Arabidopsis physiology, Droughts, Gene Editing, Genes, Plant, Trehalase genetics
- Abstract
Drought is one of the main abiotic factors that affect agricultural productivity, jeopardizing food security. Modern biotechnology is a useful tool for the generation of stress-tolerant crops, but its release and field-testing involves complex regulatory frameworks. However, gene editing technology mediated by the CRISPR/Cas9 system is a suitable strategy for plant breeding, which can lead to precise and specific modifications in the plant genome. The aim of the present work is to produce drought-tolerant plant varieties by modifying the trehalase gene. Furthermore, a new vector platform was developed to edit monocot and dicot genomes, by modifying vectors adding a streptomycin resistance marker for use with the hypervirulent Agrobacterium tumefaciens AGL1 strain. The gRNA design was based on the trehalase sequence in several species of the genus Selaginella that show drought tolerance. Arabidopsis thaliana carrying editions in the trehalase substrate-binding domain showed a higher tolerance to drought stress. In addition, a transient transformation system for gene editing in maize leaves was characterized.
- Published
- 2021
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32. Host-specific loss of sequences of an alfalfa mosaic virus isolate during systemic infection.
- Author
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Calderón-Pérez B, Piedra-Ibarra E, de la Torre-Almaráz R, Xoconostle-Cázares B, and Ruiz-Medrano R
- Subjects
- Alfalfa mosaic virus isolation & purification, Genome, Viral, Phenotype, Plant Leaves virology, Species Specificity, Alfalfa mosaic virus genetics, Host-Pathogen Interactions, Plant Diseases virology, RNA, Viral, Sequence Deletion
- Abstract
Infectivity of an alfalfa mosaic virus (AMV) isolate from Leonotis nepetaefolia in different tomato cultivars was analyzed. Symptoms typical of AMV infection were observed in indicator plants, but not in Flora Dade and Rio Grande tomato cultivars; however, mild symptoms were observed in cv. Rutgers. Furthermore, at least 1 kb of the 3´ segment of RNA 2 and the coat protein gene were missing in systemic leaves of inoculated Rio Grande and Flora Dade plants, while in cv. Rutgers infected with this AMV strain all genomic components were detected. Northern blot analysis of plants infected with the aforementioned AMV isolate confirmed the absence of the CP gene, but suggested rearrangements in both RNA 2 and 3. Factors that may affect differential movement or systemic accumulation of genomic components in multipartite viruses in plants are discussed., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2019
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33. Localized expression of antimicrobial proteins mitigates huanglongbing symptoms in Mexican lime.
- Author
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Guerra-Lupián MA, Ruiz-Medrano R, Ramírez-Pool JA, Ramírez-Ortega FA, López-Buenfil JA, Loeza-Kuk E, Morales-Galván O, Chavarin-Palacio C, Hinojosa-Moya J, and Xoconostle-Cázares B
- Subjects
- Agrobacterium genetics, Recombinant Fusion Proteins pharmacology, Citrus genetics, Citrus metabolism, Citrus microbiology, Defensins genetics, Defensins pharmacology, Muramidase genetics, Muramidase pharmacology, Plant Diseases prevention & control, Plant Proteins genetics, Plant Proteins metabolism, Plant Proteins pharmacology, Rhizobiaceae
- Abstract
Citrus huanglongbing (HLB) is a devastating disease associated with Candidatus Liberibacter asiaticus spp. (CLas), a bacterium restricted to the sieve tube system of the phloem that is transmitted by the psyllid vector, Diaphorina citri. In this study, the human antimicrobial peptides, lysozyme and β-defensin 2, were targeted to the vascular tissue of Mexican lime (Citrus x aurantifolia [Christm.] Swingle) by fusion to a phloem-restricted protein. Localized expression was achieved, via Agrobacterium tumefaciens-mediated transformation of the stem, which led to protein expression and mobilization within the vascular tissue of heterotrophic tissues. HLB-infected plants were monitored for 360 days. Lower bacteria titers were observed in plants expressing either β-defensin 2, lysozyme, or the combination thereof, and these plants had increased photosynthesis, compared to untreated control trees. Thus, targeting of antimicrobial proteins to the vascular tissue was effective in decreasing CLas titer, and alleviating citrus greening symptoms. Based on these findings, this strategy could be used to effectively treat plants that are already infected with bacterial pathogens that reside in the phloem translocation stream., (Published by Elsevier B.V.)
- Published
- 2018
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34. [Nutrient transfer and growth of Pinus greggii Engelm. inoculated with edible ectomycorrhizal mushrooms in two substrates].
- Author
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Rentería-Chávez MC, Pérez-Moreno J, Cetina-Alcalá VM, Ferrera-Cerrato R, and Xoconostle-Cázares B
- Subjects
- Agaricales, Mexico, Nutrients, Plant Roots, Seedlings, Mycorrhizae, Pinus growth & development, Pinus microbiology
- Abstract
An ectomycorrhiza is a mutualistic symbiosis of paramount importance in forestry and tree production. One of the selection criteria of ectomycorrhizal fungi that has currently gained importance is their edibility due to the economic, ecological and cultural relevance of edible ectomycorrhizal mushrooms as a non-timber forest product. The effect of the inoculation with three edible ectomycorrhizal mushrooms: Laccaria laccata, Laccaria bicolor y Hebeloma leucosarx, which are widely sold in Mexico, on the growth and nutrient contents of Pinus greggii grown in an experimental substrate and a commercial substrate enriched with a slow-release fertilizer, was evaluated. Two years after sowing, differences in terms of shoot and root biomass and macro and micronutrient contents between inoculated and non-inoculated plants, were recorded independently of the fungal species and the substrate. Despite the fact that plants grown in the commercial substrate had higher growth and nutrient contents, their ectomycorrhizal colonization percentages were smaller than those of the plants grown in the experimental substrate. The differences in the nutrient transfer to the inoculated plant shoots among the evaluated fungal species were recorded. Ca mobilization by L. laccata, Na by L. bicolor and Mn by H. leucosarx were observed in the plants growing in the experimental substrate. It has been demonstrated that the selection of substrates constitutes an important factor in the production of ectomycorrhizal plants and that the three evaluated species of edible ectomycorrhizal mushrooms have an enormous potential in the controlled mycorrhization of P. greggii., (Copyright © 2017 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.)
- Published
- 2017
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35. Structure-Function Relationship of TCTP.
- Author
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Xoconostle-Cázares B and Ruiz-Medrano R
- Subjects
- Agriculture, Amino Acid Sequence, Animals, Arabidopsis Proteins genetics, Biomarkers, Tumor genetics, Biomedical Research, Humans, Microtubule-Associated Proteins genetics, RNA, Messenger genetics, RNA, Messenger metabolism, Structure-Activity Relationship, Tumor Protein, Translationally-Controlled 1, Arabidopsis Proteins chemistry, Arabidopsis Proteins metabolism, Biomarkers, Tumor chemistry, Biomarkers, Tumor metabolism, Microtubule-Associated Proteins chemistry, Microtubule-Associated Proteins metabolism
- Abstract
The translationally controlled tumor protein (TCTP) is a small, multifunctional protein found in most, if not all, eukaryotic lineages, involved in a myriad of key regulatory processes. Among these, the control of proliferation and inhibition of cell death, as well as differentiation, are the most important, and it is probable that other responses are derived from the ability of TCTP to influence them in both unicellular and multicellular organisms. In the latter, an additional function for TCTP stems from its capacity to be secreted via a nonclassical pathway and function in a non-cell autonomous (paracrine) manner, thus affecting the responses of neighboring or distant cells to developmental or environmental stimuli (as in the case of serum TCTP/histamine-releasing factor in mammals and phloem TCTP in Arabidopsis). The additional ability to traverse membranes without a requirement for transmembrane receptors adds to its functional flexibility. The long-distance transport of TCTP mRNA and protein in plants via the vascular system supports the notion that an important aspect of TCTP function is its ability to influence the response of neighboring and distant cells to endogenous and exogenous signals in a supracellular manner. The predicted tridimensional structure of TCTPs indicates a high degree of conservation, more than its amino acid sequence similarity could suggest. However, subtle differences in structure could lead to different activities, as evidenced by TCTPs secreted by Plasmodium spp. Similar structural variations in animal and plant TCTPs, likely the result of convergent evolution, could lead to deviations from the canonical function of this group of proteins, which could have an impact from a biomedical and agricultural perspectives.
- Published
- 2017
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36. AtTCTP2 mRNA and protein movement correlates with formation of adventitious roots in tobacco.
- Author
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Toscano-Morales R, Xoconostle-Cázares B, Martínez-Navarro AC, and Ruiz-Medrano R
- Subjects
- Arabidopsis Proteins genetics, Arabidopsis Proteins physiology, Green Fluorescent Proteins analysis, Microtubule-Associated Proteins genetics, Microtubule-Associated Proteins physiology, Models, Biological, Plant Roots genetics, Plant Roots growth & development, Plant Roots metabolism, Plants, Genetically Modified growth & development, Plants, Genetically Modified metabolism, Protein Transport, RNA, Messenger metabolism, Recombinant Fusion Proteins analysis, Signal Transduction, Nicotiana growth & development, Nicotiana metabolism, Arabidopsis Proteins metabolism, Microtubule-Associated Proteins metabolism, Nicotiana genetics
- Abstract
The Translationally Controlled Tumor Proteins, or TCTP, is a superfamily of exclusively eukaryotic proteins essential in the regulation of proliferation and general growth. However, it is clear that these are multifunctional proteins given (1) the pleiotropic effects of its mutations, and (2), the multiple processes in which this protein is involved. TCTP function in general is conserved, since Arabidopsis AtTCTP1 can rescue a Drosophila mutant, and vice versa. It has become clear, however, that these proteins may have "taxon-specific" functions. In the case of plants, mRNA and/or proteins have been found in the phloem translocation stream of different species, suggesting a role in long-distance signaling. We have found that a second Arabidopsis TCTP gene, AtTCTP2, codes for a protein that moves long-distance through a graft union in tobacco. Interestingly, the mRNA is also transported long-distance. Both mRNA and protein move long-distance; interestingly, the movement, while more efficient from source to sink tissues, also occurs in the opposite direction. The protein reaches the nuclei of parenchyma cells and adventitious roots. Furthermore, it is clear that the long-distance delivery of AtTCTP2 protein and mRNA is required for the induction of adventitious roots. A model is presented that accounts for these observations.
- Published
- 2016
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37. AtTCTP2, an Arabidopsis thaliana homolog of Translationally Controlled Tumor Protein, enhances in vitro plant regeneration.
- Author
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Toscano-Morales R, Xoconostle-Cázares B, Cabrera-Ponce JL, Hinojosa-Moya J, Ruiz-Salas JL, Galván-Gordillo SV, Guevara-González RG, and Ruiz-Medrano R
- Abstract
The Translationally Controlled Tumor Protein (TCTP) is a central regulator of cell proliferation and differentiation in animals, and probably also in plants. Arabidopsis harbors two TCTP genes, AtTCTP1 (At3g16640), which is an important mitotic regulator, and AtTCTP2 (At3g05540), which is considered a pseudogene. Nevertheless, we have obtained evidence suggesting that this gene is functional. Indeed, a T-DNA insertion mutant, SALK_045146, displays a lethal phenotype during early rosette stage. Also, both the AtTCTP2 promoter and structural gene are functional, and heterozygous plants show delayed development. AtTCTP1 cannot compensate for the loss of AtTCTP2, since the accumulation levels of the AtTCTP1 transcript are even higher in heterozygous plants than in wild-type plants. Leaf explants transformed with Agrobacterium rhizogenes harboring AtTCTP2, but not AtTCTP1, led to whole plant regeneration with a high frequency. Insertion of a sequence present in AtTCTP1 but absent in AtTCTP2 demonstrates that it suppresses the capacity for plant regeneration; also, this phenomenon is enhanced by the presence of TCTP (AtTCTP1 or 2) in the nuclei of root cells. This confirms that AtTCTP2 is not a pseudogene and suggests the involvement of certain TCTP isoforms in vegetative reproduction in some plant species.
- Published
- 2015
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38. Evaluation of hydrocarbons and organochlorine pesticides and their tolerant microorganisms from an agricultural soil to define its bioremediation feasibility.
- Author
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Islas-García A, Vega-Loyo L, Aguilar-López R, Xoconostle-Cázares B, and Rodríguez-Vázquez R
- Subjects
- Environmental Monitoring, Environmental Pollution, Biodegradation, Environmental, Hydrocarbons, Chlorinated analysis, Pesticide Residues analysis, Pesticides analysis, Soil Microbiology, Soil Pollutants analysis
- Abstract
The concentrations of hydrocarbons and organochlorine pesticides (OCPs), nutrients and tolerant microorganisms in an agricultural soil from a locality in Tepeaca, Puebla, Mexico, were determined to define its feasibility for bioremediation. The OCPs detected were heptachlor, aldrin, trans-chlordane, endosulfán I, endosulfán II, 1,1,1-bis-(4-chlorophenyl)-2,2-trichloroethane (4,4'-DDT), 1,1-bis-(4-chlorophenyl)-2,2-dichloroethene (4,4'-DDE) and endrin aldehyde, with values of 0.69-30.81 ng g(-1). The concentration of hydrocarbons in the soil of Middle Hydrocarbons Fraction (MHF), C10 to C28, was 4608-27,748 mg kg(-1) and 1117-19,610 mg kg(-1) for Heavy Hydrocarbons Fraction (HHF), C28 to C35, due to an oil spill from the rupture of a pipeline. The soil was deficient in nitrogen (0.03-0.07%) and phosphorus (0 ppm), and therefore it was advisable to fertilize to bio-stimulate the native microorganisms of soil. In the soil samples, hydrocarbonoclast fungi 3.72 × 10(2) to 44.6 × 10(2) CFU g(-1) d.s. and hydrocarbonoclast bacteria (0.17 × 10(5) to 8.60 × 10(5) CFU g(-1) d.s.) were detected, with a tolerance of 30,000 mg kg(-1) of diesel. Moreover, pesticideclast fungi (5.13 × 10(2) to 42.2 × 10(2) CFU g(-1) d.s.) and pesticideclast bacteria (0.15 × 10(5) to 9.68 × 10(5) CFU g(-1) d.s.) were determined with tolerance to 20 mg kg(-1) of OCPs. Fungi and bacteria tolerant to both pollutants were also quantified. Therefore, native microorganisms had potential to be stimulated to degrade hydrocarbons and pesticides or both pollutants. The concentration of pollutants and the microbial activity analyzed indicated that bioremediation of the soil contaminated with hydrocarbons and pesticides using bio-stimulation of native microorganisms was feasible.
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- 2015
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39. Long distance movement of an Arabidopsis Translationally Controlled Tumor Protein (AtTCTP2) mRNA and protein in tobacco.
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Toscano-Morales R, Xoconostle-Cázares B, Martínez-Navarro AC, and Ruiz-Medrano R
- Abstract
Translationally Controlled Tumor Protein (TCTP) is an almost ubiquitous protein found in eukaryotes, fundamental for the regulation of development and general growth. The multiple functions of TCTP have been inferred from its involvement in several cell pathways, but the specific function of TCTP is still not known in detail. On the other hand, TCTP seems to respond to a plethora of external signals, and appears to be regulated at the transcriptional and/or translational levels by mechanisms yet to be determined. In the present work, we analyzed the capacity of AtTCTP2 gene products (mRNA and protein) to translocate long distance through tobacco heterografts (transgenic/WT and WT/transgenic). The results indicate that both AtTCTP2 mRNA and protein are capable of moving long distance in both directions (stock-scion and scion-stock) with a tendency for movement from source to sink tissue (stock to scion). Interestingly, aerial roots emerged only in heterografts where the protein was detected in both stock and scion, suggesting a correlation between the presence of AtTCTP2 and aerial root appearance. More detailed analysis showed that these aerial roots harbored the transgene and expressed both transcript and protein. In addition, the protein localization pattern in transgenic aerial and primary roots was basically the same, indicating specific nuclear destination in roots, but also in leaves. These findings provide an approach to understand the role of long-distance movement in the function of plant TCTPs, supporting the notion that some of these act in a non-cell autonomous manner, as the human counterpart, the Histamine Releasing Factor (HRF).
- Published
- 2014
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40. Structural divergence of plant TCTPs.
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Gutiérrez-Galeano DF, Toscano-Morales R, Calderón-Pérez B, Xoconostle-Cázares B, and Ruiz-Medrano R
- Abstract
The Translationally Controlled Tumor Protein (TCTP) is a highly conserved protein at the level of sequence, considered to play an essential role in the regulation of growth and development in eukaryotes. However, this function has been inferred from studies in a few model systems, such as mice and mammalian cell lines, Drosophila and Arabidopsis. Thus, the knowledge regarding this protein is far from complete. In the present study bioinformatic analysis showed the presence of one or more TCTP genes per genome in plants with highly conserved signatures and subtle variations at the level of primary structure but with more noticeable differences at the level of predicted three-dimensional structures. These structures show differences in the "pocket" region close to the center of the protein and in its flexible loop domain. In fact, all predictive TCTP structures can be divided into two groups: (1) AtTCTP1-like and (2) CmTCTP-like, based on the predicted structures of an Arabidopsis TCTP and a Cucurbita maxima TCTP; according to this classification we propose that their probable function in plants may be inferred in principle. Thus, different TCTP genes in a single organism may have different functions; additionally, in those species harboring a single TCTP gene this could carry multiple functions. On the other hand, in silico analysis of AtTCTP1-like and CmTCTP-like promoters suggest that these share common motifs but with different abundance, which may underscore differences in their gene expression patterns. Finally, the absence of TCTP genes in most chlorophytes with the exception of Coccomyxa subellipsoidea, indicates that other proteins perform the roles played by TCTP or the pathways regulated by TCTP occur through alternative routes. These findings provide insight into the evolution of this gene family in plants.
- Published
- 2014
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41. Characterization of a proposed dichorhavirus associated with the citrus leprosis disease and analysis of the host response.
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Cruz-Jaramillo JL, Ruiz-Medrano R, Rojas-Morales L, López-Buenfil JA, Morales-Galván O, Chavarín-Palacio C, Ramírez-Pool JA, and Xoconostle-Cázares B
- Subjects
- Citrus immunology, Fruit immunology, Fruit virology, Gene Expression Regulation, Viral, High-Throughput Nucleotide Sequencing, Host-Pathogen Interactions, Mexico, Nucleocapsid ultrastructure, Phylogeny, Plant Cells immunology, Plant Cells virology, Plant Diseases immunology, Plant Immunity, Plant Leaves immunology, Plant Leaves virology, Plant Viruses classification, Plant Viruses isolation & purification, Plant Viruses ultrastructure, Plasmodesmata immunology, Plasmodesmata virology, RNA Viruses classification, RNA Viruses isolation & purification, RNA Viruses ultrastructure, Citrus virology, Genome, Viral, Nucleocapsid genetics, Plant Diseases virology, Plant Viruses genetics, RNA Viruses genetics
- Abstract
The causal agents of Citrus leprosis are viruses; however, extant diagnostic methods to identify them have failed to detect known viruses in orange, mandarin, lime and bitter orange trees with severe leprosis symptoms in Mexico, an important citrus producer. Using high throughput sequencing, a virus associated with citrus leprosis was identified, belonging to the proposed Dichorhavirus genus. The virus was termed Citrus Necrotic Spot Virus (CNSV) and contains two negative-strand RNA components; virions accumulate in the cytoplasm and are associated with plasmodesmata-channels interconnecting neighboring cells-suggesting a mode of spread within the plant. The present study provides insights into the nature of this pathogen and the corresponding plant response, which is likely similar to other pathogens that do not spread systemically in plants.
- Published
- 2014
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42. The Plasmodium falciparum translationally controlled tumor protein (TCTP) is incorporated more efficiently into B cells than its human homologue.
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Calderón-Pérez B, Xoconostle-Cázares B, Lira-Carmona R, Hernández-Rivas R, Ortega-López J, and Ruiz-Medrano R
- Subjects
- Animals, B-Lymphocytes cytology, B-Lymphocytes drug effects, Cell Cycle drug effects, Fluorescent Dyes metabolism, Humans, Mice, Mice, Inbred BALB C, Protein Transport drug effects, Recombinant Proteins pharmacology, Spleen cytology, Tumor Protein, Translationally-Controlled 1, B-Lymphocytes metabolism, Biomarkers, Tumor metabolism, Plasmodium falciparum metabolism, Protozoan Proteins metabolism, Sequence Homology, Amino Acid
- Abstract
Plasmodium falciparum secretes a homologue of the translationally controlled tumor protein (TCTP) into serum of infected individuals, although its role in pathogenesis or virulence is unknown. To determine the effect of P. falciparum TCTP on B cells as compared to human TCTP, fluorescently labeled proteins were incubated on primary cultures of mouse splenic B cells and analyzed by flow cytometry and confocal microscopy. Our results indicate that both recombinant proteins are incorporated into B cells, but differ significantly in their rate and percentage of incorporation, being significantly higher for P. falciparum TCTP. Furthermore, P. falciparum TCTP showed a lower B cell proliferative effect than human TCTP, suggesting a mechanism through which the former could interfere in the host's immune response.
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- 2014
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43. A 2-component system is involved in the early stages of the Pisolithus tinctorius-Pinus greggii symbiosis.
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Herrera-Martínez A, Ruiz-Medrano R, Galván-Gordillo SV, Toscano Morales R, Gómez-Silva L, Valdés M, Hinojosa-Moya J, and Xoconostle-Cázares B
- Subjects
- Fungal Proteins metabolism, Histidine Kinase, Pinus metabolism, Salicylanilides, Symbiosis, Zeatin metabolism, Lactones metabolism, Mycorrhizae enzymology, Pinus microbiology, Plant Exudates metabolism, Protein Kinases metabolism
- Abstract
Ectomycorrhizal symbiosis results in profound morphological and physiological modifications in both plant and fungus. This in turn is the product of differential gene expression in both co-symbionts, giving rise to specialized cell types capable of performing novel functions. During the precolonization stage, chemical signals from root exudates are sensed by the ectomycorrizal fungus, and vice versa, which are in principle responsible for the observed change in the developmental symbionts program. Little is known about the molecular mechanisms involved in the signaling and recognition between ectomycorrhizal fungi and their host plants. In the present work, we characterized a novel lactone, termed pinelactone, and identified a gene encoding for a histidine kinase in Pisolithus tictorius, which function is proposed to be the perception of the aforementioned metabolites. In this study, the use of closantel, a specific inhibitor of histidine kinase phosphorylation, affected the capacity for fungal colonization in the symbiosis between Pisolithus tinctorius and Pinus greggii, indicating that a 2-component system (TCS) may operate in the early events of plant-fungus interaction. Indeed, the metabolites induced the accumulation of Pisolithus tinctorius mRNA for a putative histidine kinase (termed Pthik1). Of note, Pthik1 was able to partially complement a S. cerevisiae histidine kinase mutant, demonstrating its role in the response to the presence of the aforementioned metabolites. Our results indicate a role of a 2-component pathway in the early stages of ectomycorrhizal symbiosis before colonization. Furthermore, a novel lactone from Pinus greggii root exudates may activate a signal transduction pathway that contributes to the establishment of the ectomycorrhizal symbiosis.
- Published
- 2014
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44. Overexpression of the pumpkin (Cucurbita maxima) 16 kDa phloem protein CmPP16 increases tolerance to water deficit.
- Author
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Ramírez-Ortega FA, Herrera-Pola PS, Toscano-Morales R, Xoconostle-Cázares B, and Ruiz-Medrano R
- Subjects
- Agrobacterium physiology, Cucurbita genetics, Dehydration, Gene Expression Regulation, Plant, Glucuronidase metabolism, Green Fluorescent Proteins metabolism, Molecular Weight, Photosynthesis, Plants, Genetically Modified, Adaptation, Physiological, Cucurbita metabolism, Phloem metabolism, Plant Proteins metabolism
- Abstract
The phloem plays an important role in the delivery of nutrients and signals between photosynthetic to heterotrophic tissues. Proteins and RNAs in the phloem translocation stream may have an important role in maintaining the integrity of the sieve tube system, as well as in long-distance signaling. CmPP16 is a pumpkin phloem protein, which has been shown to bind RNA in a non-sequence specific manner, and move it cell-to-cell and conceivably, long-distance. The protein and RNA are found in both companion cell (CC) and sieve elements (SE). However, a more precise function for this protein is not known. In this work we report the overexpression of CmPP16 fused to GFP via transformation of pumpkin (Cucurbita maxima cv. Big Max) plants in the cotyledonary stage by direct inoculation of Agrobacterium tumefaciens and Agrobacterium rhizogenes. Plants overexpressing CmPP16 did not show an obvious phenotype. However, these plants displayed higher photosynthetic capacity during drought than wild-type (WT) pumpkin or transformed with another construct. These results suggest that CmPP16 may be involved in the response to stress through long-distance signaling.
- Published
- 2014
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45. Vascular gene expression: a hypothesis.
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Martínez-Navarro AC, Galván-Gordillo SV, Xoconostle-Cázares B, and Ruiz-Medrano R
- Abstract
The phloem is the conduit through which photoassimilates are distributed from autotrophic to heterotrophic tissues and is involved in the distribution of signaling molecules that coordinate plant growth and responses to the environment. Phloem function depends on the coordinate expression of a large array of genes. We have previously identified conserved motifs in upstream regions of the Arabidopsis genes, encoding the homologs of pumpkin phloem sap mRNAs, displaying expression in vascular tissues. This tissue-specific expression in Arabidopsis is predicted by the overrepresentation of GA/CT-rich motifs in gene promoters. In this work we have searched for common motifs in upstream regions of the homologous genes from plants considered to possess a "primitive" vascular tissue (a lycophyte), as well as from others that lack a true vascular tissue (a bryophyte), and finally from chlorophytes. Both lycophyte and bryophyte display motifs similar to those found in Arabidopsis with a significantly low E-value, while the chlorophytes showed either a different conserved motif or no conserved motif at all. These results suggest that these same genes are expressed coordinately in non-vascular plants; this coordinate expression may have been one of the prerequisites for the development of conducting tissues in plants. We have also analyzed the phylogeny of conserved proteins that may be involved in phloem function and development. The presence of CmPP16, APL, FT, and YDA in chlorophytes suggests the recruitment of ancient regulatory networks for the development of the vascular tissue during evolution while OPS is a novel protein specific to vascular plants.
- Published
- 2013
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46. Characterization of the pumpkin Translationally-Controlled Tumor Protein CmTCTP.
- Author
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Hinojosa-Moya JJ, Xoconostle-Cázares B, Toscano-Morales R, Ramírez-Ortega F, Cabrera-Ponce JL, and Ruiz-Medrano R
- Subjects
- Agrobacterium physiology, Biomarkers, Tumor genetics, Cucurbita genetics, Gene Expression Regulation, Plant, Phloem metabolism, Plant Leaves microbiology, Plant Leaves physiology, Plant Proteins genetics, Protein Transport, RNA, Messenger genetics, RNA, Messenger metabolism, Regeneration, Nicotiana microbiology, Nicotiana physiology, Tumor Protein, Translationally-Controlled 1, Biomarkers, Tumor metabolism, Cucurbita metabolism, Plant Proteins metabolism
- Abstract
In higher plants, the phloem plays a central role in the delivery of nutrients and signals from source to sink tissues. These signals likely coordinate different aspects of plant development, as well as its response to environmental cues. Although some phloem-transported proteins and RNAs may function as signaling molecules in plants, their mode of action remains poorly understood. Previous analysis of transcripts from CMV-infected pumpkin (Cucurbita maxima cv Big Max) identified a Translationally-Controlled Tumor Protein (TCTP) mRNA homolog, designated CmTCTP. In the present work this transcript was analyzed in terms of its expression pattern. This RNA accumulates, both in healthy and CMV-infected plants, in developing and mature phloem in petiole and roots, as well as in apices at high levels. The protein was present at lower levels in most cell types, and almost no signal was detected in apices, suggesting translational regulation of this RNA. Additionally, CmTCTP harbored by Agrobacterium rhizogenes is capable of inducing whole plant regeneration. These data suggest a role for CmTCTP in growth regulation, possibly through long-distance signaling.
- Published
- 2013
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47. Arsenate induces the expression of fungal genes involved in As transport in arbuscular mycorrhiza.
- Author
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González-Chávez Mdel C, Ortega-Larrocea Mdel P, Carrillo-González R, López-Meyer M, Xoconostle-Cázares B, Gomez SK, Harrison MJ, Figueroa-López AM, and Maldonado-Mendoza IE
- Subjects
- Adenosine Triphosphatases genetics, Adenosine Triphosphatases metabolism, Amino Acid Sequence, Base Sequence, Biological Transport, Fungal Proteins genetics, Glomeromycota classification, Glomeromycota enzymology, Glomeromycota genetics, Molecular Sequence Data, Mycorrhizae classification, Mycorrhizae enzymology, Mycorrhizae genetics, Phosphate Transport Proteins genetics, Phosphate Transport Proteins metabolism, Phylogeny, Arsenates metabolism, Fungal Proteins metabolism, Gene Expression Regulation, Fungal, Glomeromycota metabolism, Mycorrhizae metabolism
- Abstract
We utilized the two-compartment system to study the effect of arsenic (As) on the expression of the Glomus intraradices high-affinity phosphate transporter GiPT, and the GiArsA gene, a novel protein with a possible putative role as part of an arsenite efflux pump and similar to ArsA ATPase. Our results show that induction of GiPT expression correlates with As(V) uptake in the extra-radical mycelium of G. intraradices. We showed a time-concerted induction of transcript levels first of GiPT, followed by GiArsA, as well as the location of gene expression using laser microdissection of these two genes not only in the extra-radical mycelium but also in arbuscules. This work represents the first report showing the dissection of the molecular players involved in arbuscular mycorrhizal fungus (AMF)-mediated As tolerance in plants, and suggests that tolerance mediated by AMF may be caused by an As exclusion mechanism, where fungal structures such as the extra-radical mycelium and arbuscules may be playing an important role. Our results extend knowledge of the mechanisms underlying As efflux in arbuscular mycorrhizal fungi and mechanisms related to As tolerance., (Copyright © 2011 British Mycological Society. All rights reserved.)
- Published
- 2011
- Full Text
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48. Vascular expression in Arabidopsis is predicted by the frequency of CT/GA-rich repeats in gene promoters.
- Author
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Ruiz-Medrano R, Xoconostle-Cázares B, Ham BK, Li G, and Lucas WJ
- Subjects
- 5' Flanking Region genetics, Computational Biology, Cucumis sativus genetics, DNA, Plant genetics, Databases, Nucleic Acid, Genes, Plant genetics, Oryza genetics, Plant Leaves genetics, Plants, Genetically Modified genetics, Populus genetics, RNA, Messenger genetics, RNA, Plant genetics, Repetitive Sequences, Nucleic Acid, Sequence Homology, Nucleic Acid, Transcriptome, Arabidopsis genetics, Cucurbita genetics, Phloem genetics, Promoter Regions, Genetic genetics
- Abstract
Phloem-transported signals play an important role in regulating plant development and in orchestrating responses to environmental stimuli. Among such signals, phloem-mobile RNAs have been shown to play an important role as long-distance signaling agents. At maturity, angiosperm sieve elements are enucleate, and thus transcripts in the phloem translocation stream probably originate from the nucleate companion cells. In the present study, a pumpkin (Cucurbita maxima) phloem transcriptome was used to test for the presence of common motifs within the promoters of this unique set of genes, which may function to coordinate expression in cells of the vascular system. A bioinformatics analysis of the upstream sequences from 150 Arabidopsis genes homologous to members of the pumpkin phloem transcriptome identified degenerate sequences containing CT/GA- and GT/CA-rich motifs that were common to many of these promoters. Parallel studies performed on genes shown previously to be expressed in phloem tissues identified similar motifs. An expanded analysis, based on homologs of the pumpkin phloem transcriptome from cucumber (Cucumis sativus), identified similar sets of common motifs within the promoters of these genes. Promoter analysis offered support for the hypothesis that these motifs regulate expression within the vascular system. Our findings are discussed in terms of a role for these motifs in coordinating gene expression within the companion cell/sieve element system. These motifs could provide a useful bioinformatics tool for genome-wide screens on plants for which phloem tissues cannot readily be obtained., (© 2011 The Authors. The Plant Journal © 2011 Blackwell Publishing Ltd.)
- Published
- 2011
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49. Macromolecular trafficking between a vesicular arbuscular endomycorrhizal fungus and roots of transgenic tobacco.
- Author
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Morales-Rayas R, Ruiz-Medrano R, and Xoconostle-Cázares B
- Subjects
- Biological Transport, Colony Count, Microbial, Fluoresceins metabolism, Fluorescence, Glomeromycota physiology, Green Fluorescent Proteins metabolism, Plants, Genetically Modified, Protein Transport, Symbiosis, Nicotiana metabolism, Macromolecular Substances metabolism, Mycorrhizae metabolism, Nicotiana genetics, Nicotiana microbiology
- Abstract
The root system of transgenic tobacco plants expressing the enhanced green fluorescent protein (EGFP) under the control of the 35S cauliflower mosaic virus (CaMV) promoter, were colonized with the endomycorrhizal fungus Glomus intraradices. Translocation of EGFP protein from the root to the fungus was registered by light and confocal microscopy. Immunolocalization also showed the presence of EGFP in the mycelium of Glomus intraradices. Carboxyfluorescein feeding experiments on wild type mycorrhized plants evidenced the transport of fluorescein, a symplasmic tracer, from the plant to the fungus. Our results suggest that endomycorrhiza possess the capacity to exchange functional biological macromolecules as evidenced by the transport EGFP from the plant to the fungal symbiont.
- Published
- 2011
- Full Text
- View/download PDF
50. Geminivirus mixed infection on pepper plants: synergistic interaction between PHYVV and PepGMV.
- Author
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Rentería-Canett I, Xoconostle-Cázares B, Ruiz-Medrano R, and Rivera-Bustamante RF
- Subjects
- Begomovirus genetics, Begomovirus isolation & purification, Geminiviridae genetics, Geminiviridae isolation & purification, Viral Proteins genetics, Viral Proteins metabolism, Begomovirus physiology, Geminiviridae physiology, Piper nigrum virology, Plant Diseases virology
- Abstract
Background: PHYVV and PepGMV are plant viruses reported in Mexico and Southern US as causal agents of an important pepper disease known as "rizado amarillo". Mixed infections with PHYVV and PepGMV have been reported in several hosts over a wide geographic area. Previous work suggested that these viruses might interact at the replication and/or movement level in a complex manner. The aim of present report was to study some aspects of a synergistic interaction between PHYVV and PepGMV in pepper plants. These include analyses of symptom severity, viral DNA concentration and tissue localization of both viruses in single and mixed infections., Results: Mixed infections with PepGMV and PHYVV induced symptoms more severe than those observed in single viral infections. Whereas plants infected with either virus (single infection) presented a remission stage with a corresponding decrease in viral DNA levels, double-infected plants did not present symptom remission and both viral DNA concentrations dramatically increased. In situ hybridization experiments revealed that both viruses are restricted to the vascular tissue. Interestingly, the amount of viral DNA detected was higher in plants inoculated with PepGMV than that observed in PHYVV-infected plants. During mixed infections, the location of both viruses remained similar to the one observed in single infections, although the number of infected cells increases. Infections with the tripartite mixture PHYVV (A+B) + PepGMV A produced a similar synergistic infection to the one observed after inoculation with both full viruses. On the contrary, tripartite mixture PepGMV (A+B) + PHYVV A did not produce a synergistic interaction. In an attempt to study the contribution of individual genes to the synergism, several mutants of PHYVV or PepGMV were inoculated in combination with the corresponding wild type, second virus (wt PepGMV or wt PHYVV). All combinations tested resulted in synergistic infections, with exception of the TrAP mutant of PepGMV (PepGMV TrAP-) + PHYVV., Conclusion: In this report, we have demonstrated that synergistic interaction between PHYVV and PepGMV during a mixed infection is mainly due to an increased DNA concentration of both viruses, without any noticeable effect on the localization of either virus on infected plant tissue. Our results have shown that the viral component A from PepGMV is important for synergism during PHYVV-PepGMV mixed infections.
- Published
- 2011
- Full Text
- View/download PDF
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