15 results on '"Xiyang Huang"'
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2. Graph-based structural knowledge-aware network for diagnosis assistant
- Author
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Kunli Zhang, Bin Hu, Feijie Zhou, Yu Song, Xu Zhao, and Xiyang Huang
- Subjects
electronic medical records ,diagnosis assistant ,knowledge graph ,multi-label classification ,Biotechnology ,TP248.13-248.65 ,Mathematics ,QA1-939 - Abstract
Diagnosis assistant is an effective way to reduce the workloads of professional doctors. The rich professional knowledge plays a crucial role in diagnosis. Therefore, it is important to introduce the relevant medical knowledge into diagnosis assistant. In this paper, diagnosis assistant is treated as a classification task, and a Graph-based Structural Knowledge-aware Network (GSKN) model is proposed to fuse Electronic Medical Records (EMRs) and medical knowledge graph. Considering that different information in EMRs affects the diagnosis results differently, the information in EMRs is categorized into general information, key information and numerical information, and is introduced to GSKN by adding an enhancement layer to the Bidirectional Encoder Representation from Transformers (BERT) model. The entities in EMRs are recognized, and Graph Convolutional Neural Networks (GCN) is employed to learn deep-level graph structure information and dynamic representation of these entities in the subgraphs. An interactive attention mechanism is utilized to fuse the enhanced textual representation and the deep representation of these subgraphs. Experimental results on Chinese Obstetric Electronic Medical Records (COEMRs) and open dataset C-EMRs demonstrate the effectiveness of our model.
- Published
- 2022
- Full Text
- View/download PDF
3. Genome-scale transcriptomic insights into the gene co-expression network of seed abortion in triploid Siraitia grosvenorii
- Author
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Rongchang Wei, Dongping Tu, Xiyang Huang, Zuliang Luo, Xiaohua Huang, Nan Cui, Juan Xu, Faqian Xiong, Haifeng Yan, and Xiaojun Ma
- Subjects
Siraitia grosvenorii ,Seed abortion ,Transcriptome ,Gene-regulatory network ,Plant hormones ,Botany ,QK1-989 - Abstract
Abstract Background Siraitia grosvenorii (Swingle) C. Jeffrey, also known as Luohanguo or monk fruit, is a famous traditional Chinese medicine ingredient with important medicinal value and broad development prospects. Diploid S. grosvenorii has too many seeds, which will increase the utilization cost of active ingredients. Thus, studying the molecular mechanism of seed abortion in triploid S. grosvenorii, identifying the abortion-related genes, and regulating their expression will be a new direction to obtain seedless S. grosvenorii. Herein, we examined the submicroscopic structure of triploid S. grosvenorii seeds during abortion. Results Upon measuring the endogenous hormone content, we found that abscisic acid (ABA) and trans-zeatin (ZR) levels were significantly downregulated after days 15 and 20 of flowering. RNA sequencing of triploid seeds at different developmental stages was performed to identify key genes regulating abortion in triploid S. grosvenorii seeds. Multiple genes with differential expression between adjacent stages were identified; seven genes were differentially expressed across all stages. Weight gene co-expression network analysis revealed that the enhancement of monoterpene and terpene metabolic processes might lead to seed abortion by reducing the substrate flow to ABA and ZR. Conclusions These findings provide insights into the gene-regulatory network of seed abortion in triploid S. grosvenorii from different perspectives, thereby facilitating the innovation of the breeding technology of S. grosvenorii.
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- 2022
- Full Text
- View/download PDF
4. Synthesis of Crocin I and Crocin II by Multigene Stacking in Nicotiana benthamiana
- Author
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Lei Xie, Zuliang Luo, Xunli Jia, Changming Mo, Xiyang Huang, Yaran Suo, Shengrong Cui, Yimei Zang, Jingjing Liao, and Xiaojun Ma
- Subjects
crocins ,crocin I ,crocin II ,multigene assembly ,plant chassis ,synthetic biology ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Crocins are a group of highly valuable water-soluble carotenoids that are reported to have many pharmacological activities, such as anticancer properties, and the potential for treating neurodegenerative diseases including Alzheimer’s disease. Crocins are mainly biosynthesized in the stigmas of food–medicine herbs Crocus sativus L. and Gardenia jasminoides fruits. The distribution is narrow in nature and deficient in resources, which are scarce and expensive. Recently, the synthesis of metabolites in the heterologous host has opened up the potential for large-scale and sustainable production of crocins, especially for the main active compounds crocin I and crocin II. In this study, GjCCD4a, GjALDH2C3, GjUGT74F8, and GjUGT94E13 from G. jasminoides fruits were expressed in Nicotiana benthamiana. The highest total content of crocins in T1 generation tobacco can reach 78,362 ng/g FW (fresh weight) and the dry weight is expected to reach 1,058,945 ng/g DW (dry weight). Surprisingly, the primary effective constituents crocin I and crocin II can account for 99% of the total crocins in transgenic plants. The strategy mentioned here provides an alternative platform for the scale-up production of crocin I and crocin II in tobacco.
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- 2023
- Full Text
- View/download PDF
5. Effects of light intensity on the growth of Polygala fallax Hemsl. (Polygalaceae)
- Author
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Huiling Liang, Baoyu Liu, Chao Wu, Xiujiao Zhang, Manlian Wang, Xiyang Huang, Li Wan, and Hui Tang
- Subjects
Polygala fallax Hemsl. ,light intensity ,photosynthesis ,biomass ,survival rate ,saponin ,Plant culture ,SB1-1110 - Abstract
Polygala fallax Hemsl. (Polygalaceae), a traditional Chinese medicinal species, requires optimal growth conditions for artificial cultivation. Irradiance is one of the primary environmental factors that affects the growth and survival of P. fallax Hemsl. plants, which seemingly grow better under weak irradiance conditions. However, the optimum light intensity for growing P. fallax Hemsl. is not clear. To determine the optimum light intensity for cultivating this medicinal plant species, P. fallax Hemsl. plants from two different habitats were grown and exposed to three shade treatments (50% shade, 70% shade and 90% shade, which resulted in photosynthetically active radiation amounts equal to 662 μmol m−2 s−1, 401 μmol m−2 s−1, and 131 μmol m−2 s−1, respectively) to evaluate survival, growth, leaf photosynthesis, and the main pharmacological active ingredients (saponins) in response to shade. Our results revealed that the P. fallax Hemsl. plants in the different habitats consistently exhibited relatively high photosynthesis rates, biomass, survival rates and saponins under 662 μmol m−2 s−1 created by the 50% shade treatment. We concluded that photosynthetically active radiation of approximately 662 μmol m−2 s−1 is suitable for the cultivation of P. fallax Hemsl. plants.
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- 2022
- Full Text
- View/download PDF
6. Plant Metabolic Engineering by Multigene Stacking: Synthesis of Diverse Mogrosides
- Author
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Jingjing Liao, Tingyao Liu, Lei Xie, Changming Mo, Xiyang Huang, Shengrong Cui, Xunli Jia, Fusheng Lan, Zuliang Luo, and Xiaojun Ma
- Subjects
mogrosides ,natural sweetener ,plant chassis ,multigene assembly ,synthetic biology ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Mogrosides are a group of health-promoting natural products that extracted from Siraitia grosvenorii fruit (Luo-han-guo or monk fruit), which exhibited a promising practical application in natural sweeteners and pharmaceutical development. However, the production of mogrosides is inadequate to meet the need worldwide, and uneconomical synthetic chemistry methods are not generally recommended for structural complexity. To address this issue, an in-fusion based gene stacking strategy (IGS) for multigene stacking has been developed to assemble 6 mogrosides synthase genes in pCAMBIA1300. Metabolic engineering of Nicotiana benthamiana and Arabidopsis thaliana to produce mogrosides from 2,3-oxidosqualene was carried out. Moreover, a validated HPLC-MS/MS method was used for the quantitative analysis of mogrosides in transgenic plants. Herein, engineered Arabidopsis thaliana produced siamenoside I ranging from 29.65 to 1036.96 ng/g FW, and the content of mogroside III at 202.75 ng/g FW, respectively. The production of mogroside III was from 148.30 to 252.73 ng/g FW, and mogroside II-E with concentration between 339.27 and 5663.55 ng/g FW in the engineered tobacco, respectively. This study provides information potentially applicable to develop a powerful and green toolkit for the production of mogrosides.
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- 2022
- Full Text
- View/download PDF
7. Heterologous Biosynthesis of Health-Promoting Baicalein in Lycopersicon esculentum
- Author
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Jingjing Liao, Lei Xie, Tingyao Liu, Changming Mo, Shengrong Cui, Xunli Jia, Xiyang Huang, Zuliang Luo, and Xiaojun Ma
- Subjects
baicalein ,multigene vector ,Lycopersicon esculentum ,plant chassis ,biofortification ,heterologous biosynthesis ,Organic chemistry ,QD241-441 - Abstract
Baicalein is a valuable flavonoid isolated from the medicinal plant Scutellaria baicalensis Georgi, which exhibits intensive biological activities, such as anticancer and antiviral activities. However, its production is limited in the root with low yield. In this study, In-Fusion and 2A peptide linker were developed to assemble SbCLL-7, SbCHI, SbCHS-2, SbFNSII-2 and SbCYP82D1.1 genes driven by the AtPD7, CaMV 35S and AtUBQ10 promoters with HSP, E9 and NOS terminators, and were used to engineer baicalein biosynthesis in transgenic tomato plants. The genetically modified tomato plants with this construct synthesized baicalein, ranging from 150 ng/g to 558 ng/g FW (fresh weight). Baicalein-fortified tomatoes have the potential to be health-promoting fresh vegetables and provide an alternative source of baicalein production, with great prospects for market application.
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- 2022
- Full Text
- View/download PDF
8. Generic conditions for suppressing the coherent synchrotron radiation induced emittance growth in a two-dipole achromat
- Author
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Yi Jiao, Xiaohao Cui, Xiyang Huang, and Gang Xu
- Subjects
Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
The effect of the coherent synchrotron radiation (CSR) becomes evident, and leads to increased beam energy spread and transverse emittance dilution, as both the emittance and bunch length of the electron beams are continuously pushed down in present and forthcoming high-brightness light sources and linear colliders. Suppressing this effect is important to preserve the expected machine performance. Methods of the R-matrix analysis and the Courant-Snyder formalism analysis have been proposed to evaluate and to suppress the emittance growth due to CSR in achromatic cells. In this paper a few important modifications are made on these two methods, which enable us to prove that these two methods are equivalent to each other. With the modified analysis, we obtain explicit and generic conditions of cancelling the CSR-driven emittance excitation in a single achromat consisting of two dipoles of arbitrary bending angles. In spite of the fact that the analysis constrains itself in a linear regime, based on the assumption that CSR-induced particle energy deviation is proportional to both θ and ρ^{1/3}, with θ being the bending angle and ρ the bending radius, it is demonstrated through ELEGANT simulations that the conditions derived from this analysis are still effective in suppressing the emittance growth when a more detailed one-dimensional CSR model is considered. In addition, it illustrates that the emittance growth can be reduced to a lower level with the proposed conditions than with the other two approaches, such as matching the beam envelope to the CSR kick and setting the cell-to-cell betatron phase advance to an appropriate value.
- Published
- 2014
- Full Text
- View/download PDF
9. Equilibrium electron beam parameters of the High Energy Photon Source
- Author
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Haisheng Xu, Cai Meng, Yuemei Peng, Saike Tian, Na Wang, Xiaohao Cui, Chongchong Du, Zhe Duan, Yuanyuan Guo, Ping He, Xiyang Huang, Daheng Ji, Hongfei Ji, Yi Jiao, Jingyi Li, Nan Li, Xiaoyu Li, Xiaohan Lu, Pengfei Liang, Weimin Pan, Huamin Qu, Bin Wang, Jiuqing Wang, Yuanyuan Wei, Jinyu Wan, Gang Xu, Fang Yan, Chenghui Yu, Sen Yue, Xiang Zhang, and Yaliang Zhao
- Subjects
Nuclear and High Energy Physics ,Nuclear Energy and Engineering - Abstract
Purpose The physics design of the High Energy Photon Source (HEPS) was finished after many times of iteration. Hereby, the typical equilibrium electron beam parameters corresponding to the proposed two baseline operation modes in the baseline design of HEPS are presented. Methods To compute the equilibrium parameters of the electron beam, the lattice parameters, RF parameters, and the parameters of the insertion devices (IDs) were determined first. Furthermore, it is more precise to use the full-current electron beam parameters in the estimations of the performance of the synchrotron light. Therefore, not only the single-particle dynamics but also the current-dependent collective effects need to be considered in the computations of the full-current, equilibrium parameters of the electron beam. Both analytic computations and multi-particle tracking simulations were carried out. Results The full-current, equilibrium parameters of the electron beams in the HEPS storage ring are presented in this paper. Moreover, the main beam parameters in the injector (the booster and the LINAC), corresponding to the two baseline operation modes of the storage ring, are also presented. Conclusion The typical electron beam parameters corresponding to the two baseline operation modes are given in detail in this paper.
- Published
- 2023
10. Genome-scale Transcriptomic Insights Into the Gene-regulatory Network of Seed Abortion in Triploid Siraitia Grosvenorii
- Author
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Rongchang Wei, Xiyang Huang, Juan Xu, Nan Cui, Haifeng Yan, Dongping Tu, Xiaohua Huang, Faqian Xiong, Xiaojun Ma, and Zuliang Luo
- Subjects
Genetics ,Transcriptome ,fungi ,Gene regulatory network ,Genome scale ,food and beverages ,Abortion ,Biology ,Siraitia grosvenorii ,reproductive and urinary physiology - Abstract
BackgroundSiraitia grosvenorii (Swingle) C. Jeffrey, also known as Luohanguo or monk fruit, is a famous traditional Chinese medicine ingredient with important medicinal value and broad development prospects. Diploid S. grosvenorii has too many seeds. Thus, studying the molecular mechanism of seed abortion in triploid S. grosvenorii, identifying the abortion-related genes, and regulating their expression will be a new direction to obtain seedless S. grosvenorii. Herein, we examined the submicroscopic structure of triploid S. grosvenorii seeds during abortion. ResultsBy measuring the content of endogenous hormones, we found that abscisic acid (ABA) and trans-zeatin (ZR) levels were significantly downregulated at days 15 and 20 after flowering. RNA-seq of triploid seeds at different developmental stages was performed to identify the key genes regulating abortion of triploid S. grosvenorii seeds. Multiple differentially expressed genes between adjacent stages were identified; seven genes were differentially expressed across all stages. Weight gene co-expression network analysis revealed that the enhancement of monoterpene and terpene metabolic processes might lead to seed abortion by reducing substrate flow to ABA and ZR.ConclusionsThese findings provide insights into the gene-regulatory network of seed abortion in triploid S. grosvenorii from different perspectives, thereby facilitating the innovation of the breeding technology of S. grosvenorii.
- Published
- 2021
11. Physiological and Transcriptomic Responses of Illicium difengpi to Drought Stress
- Author
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Baoyu Liu, Huiling Liang, Chao Wu, Xiyang Huang, Xiangying Wen, Manlian Wang, and Hui Tang
- Subjects
Illicium difengpi ,drought stress ,transcriptome sequencing ,physiological characteristics ,transcription factors ,differentially expressed genes ,Renewable Energy, Sustainability and the Environment ,fungi ,Geography, Planning and Development ,Building and Construction ,Management, Monitoring, Policy and Law - Abstract
Illicium difengpi Kib and Kim, an endangered plant unique to karst areas in China, has evolved an extremely high tolerance to arid environments. To elucidate the molecular mechanisms of the response to drought stress in I. difengpi, physiological index determination and transcriptome sequencing experiments were conducted in biennial seedlings grown under different soil moisture conditions (70~80%, 40~50% and 10~20%). With increasing drought stress, the leaf chlorophyll content decreased, while the proline (Pro), soluble sugar (SS) and malondialdehyde (MDA) contents increased; superoxide dismutase (SOD) and peroxidase (POD) activities also increased. Transcriptome sequencing and pairwise comparisons of the treatments revealed 2489, 4451 and 753 differentially expressed genes (DEGs) in CK70~80 vs. XP40~50, CK70~80 vs. XP10~20 and XP40~50 vs. XP10~20, respectively. These DEGs were divided into seven clusters according to their expression trends, and the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment results of different clusters indicated that genes in the hormone signal transduction and osmotic regulation pathways were greatly activated under mild drought stress. When drought stress increased, the DEGs related to membrane system and protein modification and folding were all upregulated; simultaneously, chitin catabolism- and glycolysis/gluconeogenesis-related genes were continuously upregulated throughout drought stress, while the genes involved in photosynthesis were downregulated. Here, 244 transcription factors derived from 10 families were also identified. These results lay a foundation for further research on the adaptation of I. difengpi to arid environments in karst areas and the establishment of a core regulatory relationship in its drought resistance mechanism.
- Published
- 2022
12. An outlier detection algorithm based on the degree of sharpness and its applications on traffic big data preprocessing
- Author
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Xiyang Huang, Zhonghao Wang, Jianli Xiao, and Yan Song
- Subjects
Degree (graph theory) ,Computer science ,business.industry ,Big data ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Image processing ,computer.software_genre ,Data visualization ,Outlier ,Preprocessor ,Anomaly detection ,Data pre-processing ,Data mining ,business ,computer ,Algorithm - Abstract
Outlier detection is one important research area of data mining, which plays key roles in data preprocessing, equipment fault diagnosis, credit fraud detection, traffic incident detection etc. This paper is devoted to a new outlier detection algorithm based on the degree of sharpness. The proposed algorithm takes a new way to solve the outlier detection problem, which employs a measure in image processing, degree of sharpness, to detect the outliers. Compared to the classical outlier detection methods with statistical learning, the proposed algorithm has no iterative processes. It generates a smooth curve to describe the overall distribution of the data firstly, and then computes the sharpness of degree for each data point. Finally, the outliers are recognized as they have larger values of the degree of sharpness. Also, some practical applications on traffic big data are presented to prove the effectiveness of the proposed algorithm.
- Published
- 2017
13. Generic conditions for suppressing the coherent synchrotron radiation induced emittance growth in a two-dipole achromat
- Author
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Xiyang Huang, Gang Xu, Yi Jiao, and Xiaohao Cui
- Subjects
Physics ,Nuclear and High Energy Physics ,Physics and Astronomy (miscellaneous) ,business.industry ,Synchrotron radiation ,Surfaces and Interfaces ,Electron ,Betatron ,Linear particle accelerator ,law.invention ,Dipole ,Optics ,Achromatic lens ,law ,Physics::Accelerator Physics ,lcsh:QC770-798 ,Thermal emittance ,lcsh:Nuclear and particle physics. Atomic energy. Radioactivity ,business ,Beam (structure) - Abstract
The effect of the coherent synchrotron radiation (CSR) becomes evident, and leads to increased beam energy spread and transverse emittance dilution, as both the emittance and bunch length of the electron beams are continuously pushed down in present and forthcoming high-brightness light sources and linear colliders. Suppressing this effect is important to preserve the expected machine performance. Methods of the R-matrix analysis and the Courant-Snyder formalism analysis have been proposed to evaluate and to suppress the emittance growth due to CSR in achromatic cells. In this paper a few important modifications are made on these two methods, which enable us to prove that these two methods are equivalent to each other. With the modified analysis, we obtain explicit and generic conditions of cancelling the CSR-driven emittance excitation in a single achromat consisting of two dipoles of arbitrary bending angles. In spite of the fact that the analysis constrains itself in a linear regime, based on the assumption that CSR-induced particle energy deviation is proportional to both theta and rho(1/3), with theta being the bending angle and rho the bending radius, it is demonstrated through ELEGANT simulations that the conditions derived from this analysis are still effective in suppressing the emittance growth when a more detailed one-dimensional CSR model is considered. In addition, it illustrates that the emittance growth can be reduced to a lower level with the proposed conditions than with the other two approaches, such as matching the beam envelope to the CSR kick and setting the cell-to-cell betatron phase advance to an appropriate value.
- Published
- 2014
14. Suppression of the emittance growth induced by coherent synchrotron radiation in triple-bend achromats
- Author
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Xiyang Huang, Gang Xu, Yi Jiao, and Xiaohao Cui
- Subjects
Physics ,Accelerator Physics (physics.acc-ph) ,Nuclear and High Energy Physics ,business.industry ,Synchrotron radiation ,FOS: Physical sciences ,Astronomy and Astrophysics ,Electron ,law.invention ,Transverse plane ,Optics ,Achromatic lens ,law ,Phase space ,Physics::Accelerator Physics ,Thermal emittance ,Physics - Accelerator Physics ,Laser beam quality ,business ,Instrumentation ,Beam (structure) - Abstract
The coherent synchrotron radiation (CSR) effect in a bending path plays an important role in transverse emittance dilution in high-brightness light sources and linear colliders, where the electron beams are of short bunch length and high peak current. Suppression of the emittance growth induced by CSR is critical to preserve the beam quality and help improve the machine performance. It has been shown that the CSR effect in a double-bend achromat (DBA) can be analyzed with the two-dimensional point-kick analysis method. In this paper, this method is applied to analyze the CSR effect in a triple-bend achromat (TBA) with symmetric layout, which is commonly used in the optics designs of energy recovery linacs (ERLs). A condition of cancelling the CSR linear effect in such a TBA is obtained, and is verified through numerical simulations. It is demonstrated that emittance preservation can be achieved with this condition, and to a large extent, has a high tolerance to the fluctuation of the initial transverse phase space distribution of the beam., Comment: 9 pages, 4 figures
- Published
- 2014
- Full Text
- View/download PDF
15. Application of Grey Correlation Analysis Based on Entropy Weight for Supplier Selection
- Author
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Xiyang Huang and Jingsong Lin
- Subjects
Data value ,Statistics ,Econometrics ,Entropy (information theory) ,Grey correlation analysis ,Mathematics - Abstract
Supplier is a crucial factor to enterprises. In order to improve the competitive power of the enterprises, we should study the method about estimating the supplier. In order to improve on the evaluation precision of the grey correlation analysis model, the entropy theory is introduced into the grey correlation analysis. According to the theory of entropy, the weight coefficients in the model are derived from the available data value reflected by the information entropy. By this method, the subjective influence of weight allocation can be avoided effectively. The paper gives the index of the estimating supplier and by the method of grey association analysis based on entropy weight, giving a decision-making method for the selection of supplier.
- Published
- 2010
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