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Abstract The effect of hydrodynamic mixing on controlling Microcystis blooms or changing the algal community to diatom dominance has been widely studied; however, the effects of colonial Microcystis biomass on the development of the algal community are poorly known. Here, in order to study the changes in Microcystis blooms under continuous aeration mixing, an experiment was carried out in a greenhouse with factors of varying biomass of Microcystis and inorganic nitrogen and phosphorus enrichment in summer. There were three chlorophyll a (Chl-a) levels in six treatments: low Chl-a level of 68.4 μg L-1 (treatments L, L-E), medium Chl-a level of 468.7 μg L-1 (treatments M, M-E), and high Chl-a level of 924.1 μg L-1 (treatments H, H-E). Treatments L-E, M-E and H-E were enriched with the same inorganic nitrogen and phosphorus nutrients. During the experiment of 30 days, the concentration of Microcystis and Chl-a decreased, and diatom Nitzschia palea cells appeared in all the treatments, which became dominant in treatments M, M-E, H and H-E, with the highest biomass of 9.41 ± 1.96 mg L-1 Nitzschia in treatment H-E on day 30. The rank order of the biomass of Nitzschia from low to high was (L = L-E)

Abstract Aging in mammals is accompanied by an imbalance of intestinal homeostasis and accumulation of mitochondrial DNA (mtDNA) mutations. However, little is known about how accumulated mtDNA mutations modulate intestinal homeostasis. We observe the accumulation of mtDNA mutations in the small intestine of aged male mice, suggesting an association with physiological intestinal aging. Using polymerase gamma (POLG) mutator mice and wild-type mice, we generate male mice with progressive mtDNA mutation burdens. Investigation utilizing organoid technology and in vivo intestinal stem cell labeling reveals decreased colony formation efficiency of intestinal crypts and LGR5-expressing intestinal stem cells in response to a threshold mtDNA mutation burden. Mechanistically, increased mtDNA mutation burden exacerbates the aging phenotype of the small intestine through ATF5 dependent mitochondrial unfolded protein response (UPRmt) activation. This aging phenotype is reversed by supplementation with the NAD+ precursor, NMN. Thus, we uncover a NAD+ dependent UPRmt triggered by mtDNA mutations that regulates the intestinal aging.

Nitrite is an environmental pollutant in cultures of Macrobrachium nipponense and may induce oxidative stress and apoptosis. The oriental river prawn is an important economic aquaculture species in China, Japan, and Southeast Asia but is experiencing degradation of germplasm resources. Hybridization is a means of genetic improvement that could help to overcome this serious problem. In this study, the parental population (Dianshan Lake (DS) and Dongting Lake (DT)) and the hybrid population were exposed to 0 and 10 mg/L nitrite for 96 h. The survival rate of the hybrid group was significantly greater than the DS and DT groups (P

Abstract The algal succession in Microcystis blooms of varying biomass under continuous aeration was studied in a greenhouse. There were four treatments (control, Low, Medium, and High) with initial chlorophyll a (Chl-a) of 32.5, 346.8, 1413.7, and 14,250.0 μg L−1, respectively. During the experiment, Cyanophyta biomass was the lowest in the Medium treatment (P

Cellular metabolism is important in pluripotency and cell fate regulation. Here, authors observe chromatin remodeling followed by TCA enzyme translocation from the mitochondria to the nucleus, demonstrating pluripotency regulation by mitochondria to nucleus retrograde signaling.

AbstractNitrite is harmful to aquatic animals in freshwater pond aquaculture environments. Nitrite is oxidized to nitrate mainly by nitrite-oxidizing bacteria (NOB). NOB may be promising in the control of nitrite concentration in aquaculture water. To better understand the role of NOB in the nitrogen cycling process of freshwater aquaculture ponds, we describe the characterization of NOB by using a culture derived from a freshwater aquaculture pond. Analysis by 16S rRNA sequence alignment showed that the NOB in the culture belong to the genus Nitrospira, whose generation time and nitrite–oxidizing rate were 9.87 h and 4.63 (± 0.07) pg NO2−–N cell−1·h−1 in the exponential growth phase, respectively. The oxidation of nitrite could be inhibited completely when the concentration of dissolved oxygen was 1.0 ± 0.5 mg/L.−1 The NOB could oxidize nitrite into nitrate at 29.84‰ salinity. However, the nitrification rate decreased significantly with an increase in salinity concentration ranging from 5.72‰ to 29.84‰. The optimal temperature range was 25–37 °C for the growth of NOB, and activity significantly decreased when the temperature was below 20 °C or reached 40 °C. In this study, the initial pH 6 ± 0.1–8 ± 0.1 was not observed to affect the nitrification activity of the NOB culture. Illumination of 410 ± 10 nm can completely inhibit NOB nitrification, and 520 ± 10 nm illumination partially inhibits NOB, whereas 660 ± 10 nm illumination has no effect. These findings indicate that the degree of photoinhibition in NOB increases with decreasing wavelength.

To address the issues of submerged vegetation restoration in the deep-water area of Baiyangdian Lake, a type of suspended ecological bed was developed, which was constructed with aquatic plants, ropes and supporting poles. The depth of a suspended ecological bed could be adjusted based on the water level. From July to November 2019, the phytoplankton community structure in the water around the suspended beds was continually monitored, and the effects of the submerged plants present in the suspended beds on the phytoplankton community structure in the deep-water area of the lake were studied. The results showed that Myriophyllum spicatum L. grew well in the suspended beds, with 95% survival after 60 d. The maximum biomass was reached in 55 d, and the water surface coverage reached 23%. There were 71 species of phytoplankton belonging to seven phyla in the water surrounding the suspended ecological beds. Over half (36 species) were members of Prochlorophyta, and the average density and biomass of phytoplankton gradually decreased month by month. The proportion of cyanobacteria in the community showed a downwards trend, while the proportions of other phytoplankton phyla showed upwards trends. The annual average Shannon–Wiener diversity index was 0.88, the annual average Pielou evenness index was 0.32, and the annual average Margalef richness index was 1.21. The Shannon–Wiener diversity index and Pielou's evenness index both showed increasing trends. This comprehensive analysis shows that planting submerged plants in suspended beds can improve the phytoplankton community structure of the surrounding water and increase the biodiversity of phytoplankton, making this an effective measure for restoring submerged vegetation in algae-dominated northern lakes.

Summary: Chimeric antigen receptor (CAR) T cell therapy lacks persistent efficacy with “on-target, off-tumor” toxicities for treating solid tumors. Thus, an antibody-guided switchable CAR vector, the chimeric Fc receptor CD64 (CFR64), composed of a CD64 extracellular domain, is designed. T cells expressing CFR64 exert more robust cytotoxicity against cancer cells than CFR T cells with high-affinity CD16 variant (CD16v) or CD32A as their extracellular domains. CFR64 T cells also exhibit better long-term cytotoxicity and resistance to T cell exhaustion compared with conventional CAR T cells. With trastuzumab, the immunological synapse (IS) established by CFR64 is more stable with lower intensity induction of downstream signaling than anti-HER2 CAR T cells. Moreover, CFR64 T cells exhibit fused mitochondria in response to stimulation, while CARH2 T cells contain predominantly punctate mitochondria. These results show that CFR64 T cells may serve as a controllable engineered T cell therapy with prolonged persistence and long-term antitumor activity.

During the process of circulating aquaculture, high concentrations of nitrate will accumulate. A simultaneous denitrification and fermentation process is described to remove nitrate from a recirculating aquaculture system using endogenous carbon on a biofilm. 15N isotope technology was used to assess the nitrate removal, mainly through heterotrophic denitrification. The nitrate removal rate could be as high as 98.97%, with a final concentration of nitrate below 1 mg/L. The denitrification process obeys a Michaelis–Menten-type enzyme kinetic model, with a half saturation constant of 99.91 mg/L and a maximum nitrate removal rate of 0.39 mg L−1 h−1 at 28 °C. The functional genes narG and narH for nitrate removal were obtained from Nitrospirae spp. at proportions of 39.13% and 26.16%, respectively. The acetate, propionate and iso-valerate produced by anaerobic fermentation provided the principal electron donors for denitrification.

Abstract Background Adoptive cell therapy (ACT) is a particularly promising area of cancer immunotherapy, engineered T and NK cells that express chimeric antigen receptors (CAR) are being explored for treating hematopoietic malignancies but exhibit limited clinical benefits for solid tumour patients, successful cellular immunotherapy of solid tumors demands new strategies. Methods Inactivation of BCL11B were performed by CRISPR/Cas9 in human T cells. Immunophenotypic and transcriptional profiles of sgBCL11B T cells were characterized by cytometer and transcriptomics, respectively. sgBCL11B T cells are further engineered with chimeric antigen receptor. Anti-tumor activity of ITNK or CAR-ITNK cells were evaluated in preclinical and clinical studies. Results We report that inactivation of BCL11B in human CD8+ and CD4+ T cells induced their reprogramming into induced T-to-natural killer cells (ITNKs). ITNKs contained a diverse TCR repertoire; downregulated T cell-associated genes such as TCF7 and LEF1; and expressed high levels of NK cell lineage-associated genes. ITNKs and chimeric antigen receptor (CAR)-transduced ITNKs selectively lysed a variety of cancer cells in culture and suppressed the growth of solid tumors in xenograft models. In a preliminary clinical study, autologous administration of ITNKs in patients with advanced solid tumors was well tolerated, and tumor stabilization was seen in six out nine patients, with one partial remission. Conclusions The novel ITNKs thus may be a promising novel cell source for cancer immunotherapy. Trial registration ClinicalTrials.gov, NCT03882840 . Registered 20 March 2019-Retrospectively registered.

In agricultural and fishery production, the occurrence of cyanobacterial blooms and the contamination of freshwater systems with microplastics have become increasingly important research focuses. However, the individual and combined toxic mechanisms of these two pollutants are not yet fully understood. Therefore, in this study, we analyzed the effects of these two stressors, microcystins (MC) and nanoplastics (NP), on the transcriptome and metabolome of the hepatopancreas of river clams. RNA and metabolites extracted from river clams treated with MC, NP, and a combination of MC and NP were used to construct standardized cDNA libraries, which were then subjected to integrated analysis. Significant enrichment of 49 pathways, 34 pathways, and 44 pathways was observed in the MC group compared to the control group, NP group compared to the control group, and NP-MC group compared to the control group, respectively. In these three experimental groups, we found that the lysosome pathway, which affects immune function and cell apoptosis, was enriched with numerous differentially expressed genes and metabolites. Changes in ATP6N and ADP may impair lysosomal acidification and disrupt normal lysosomal degradation processes, indicating interference with the hepatopancreatic metabolism of pollutants. Interestingly, we observed significant alterations in the cathepsin family, and the downregulation of cathepsin genes, along with the downregulation of ATP6N, implies a potential disruption in lysosomal proteolysis. In the NP-MC group, the downregulation of purine expression levels suggests an impact on the immune system of river clams by NP-MC. In conclusion, while there is some overlap in the damage caused to the hepatopancreas of river clams by MCs, MPs, and the combination of NP-MC, further research is necessary to fully understand their effects.

Salinity is an important factor in the aquatic environment and affects the ion homeostasis and physiological activities of crustaceans. Macrobrachium nipponense is a shrimp that mainly lives in fresh and low-salt waters and plays a huge economic role in China’s shrimp market. Currently, there are only a few studies on the effects of salinity on M. nipponense. Therefore, it is of particular importance to study the molecular responses of M. nipponense to salinity fluctuations. In this study, M. nipponense was set at salinities of 0, 8, 14 and 22‰ for 6 weeks. The gills from the control (0‰) and isotonic groups (14‰) were used for RNA extraction and transcriptome analysis. In total, 593 differentially expressed genes (DEGs) were identified, of which 282 were up-regulated and 311 were down-regulated. The most abundant gill transcripts responding to different salinity levels based on GO classification were organelle membrane (cellular component), creatine transmembrane transporter activity (molecular function) and creatine transmembrane transport (biological function). KEGG analysis showed that the most enriched and significantly affected pathways included AMPK signaling, lysosome and cytochrome P450. In addition, 15 DEGs were selected for qRT-PCR verification, which were mainly related to ion homeostasis, glucose metabolism and lipid metabolism. The results showed that the expression patterns of these genes were similar to the high-throughput data. Compared with the control group, high salinity caused obvious injury to gill tissue, mainly manifested as contraction and relaxation of gill filament, cavity vacuolation and severe epithelial disintegration. Glucose-metabolism-related enzyme activities (e.g., pyruvate kinase, hexokinase, 6-phosphate fructose kinase) and related-gene expression (e.g., hexokinase, pyruvate kinase, 6-phosphate fructose kinase) in the gills were significantly higher at a salinity of 14‰. This study showed that salinity stress activated ion transport channels and promoted an up-regulated level of glucose metabolism. High salinity levels caused damage to the gill tissue of M. nipponense. Overall, these results improved our understanding of the salt tolerance mechanism of M. nipponense.

Suspended solids (SS) have become the main cause of water quality deterioration in aquaculture ponds. The application of ozone to aquaculture water bodies can improve the water quality and facilitate the removal of suspended solids. We used different concentrations of ozone to oxidize aquaculture water and then determined the resulting concentration of suspended solids and their particle size distribution, as well as CODMn, UV254, algal density, and nitrogen content. The results showed the following: (i) The decrease in SS was the highest, amounting to 10.47%, after the addition of 2 mg/L of ozone and the completion of the oxidation reaction. Ozone caused the fragmentation of large SS particles and the flocculation of small particles, and these effects became more pronounced as the ozone concentration increased; (ii) After the introduction of ozone, the humus macromolecules naturally present in the water were oxidized, which improved the biochemical degradation of the water pollutants; (iii) Ozone oxidation caused the degradation of algae, resulting in a decrease in phytoplankton biomass and in the eutrophication of the water body; (iv) As the ozone concentration increased, the level of nitrous nitrogen decreased, while the concentrations of nitrate nitrogen and ammonia nitrogen were unchanged. The highest increase in total nitrogen was measured when 0.5 mg/L of ozone was applied. This study provides a theoretical basis for the application of ozone to eliminate eutrophic substances in freshwater ponds.

Major depressive disorder (MDD) continues to impose a significant burden on individuals and society. Existing data support the important role that inflammatory responses play in its pathophysiology, with new findings continuing to be reported. In this narrative review paper, we focus on three dimensions of inflamed depression: risk factors, clinical symptoms, and neurofunctional changes. We aim to answer the following questions: What characteristics most robustly discriminate between inflamed and non-inflamed depression? How can we leverage on these discriminative characteristics to classify inflamed depressed patients? One important point that has emerged is the heterogeneous nature of the relationship between inflammation and depression. Not all inflamed patients are depressed, and not all depressed patients are inflamed. Some risk factors heighten vulnerability to inflamed depression, including childhood adversity, old age, and being female. The inflamed depression subtype has been associated with distinct clinical phenotypes, most robustly with physical symptoms such as sleep problems, changes in appetite, and fatigue. Neurofunctional changes are found in the dopaminergic reward processing pathways. A better characterization of the inflamed depression subtype by leveraging multidimensional data will help craft a more precise treatment for these patients.

Denitrification and anaerobic ammonium oxidation (anammox) are the key processes of nitrogen removal in aquaculture pond sediment. However, the reaction characteristics remain unclear. In this study, considering the sediment of conventional freshwater fishponds as the object, we set the optimal conditions of organic carbon, temperature, and total nitrates for denitrification and anammox. We found that the abundance and diversity of denitrifying bacteria and anammox bacteria in the two groups were significantly different. Candidatus brocadia is the most important bacteria in aquaculture pond sediments. The removal efficiencies of nitrite (NO2−-N), nitrate (NO3−-N), ammonia nitrogen (NH4+-N), and total organic carbon (TOC) in the anammox optimal conditions group were 97.99%, 93.05%, 54.92%, and 58.82%, respectively; however, those in the denitrification optimal conditions group were 99.82%, 86.10%, 45.74%, and 70.76%, respectively. Comparing each optimal condition, the removal efficiency of NO2−-N and TOC in the denitrification optimal condition groups was higher, whereas those of NO3−-N and NH4+-N were higher in the anammox optimal condition groups. We provide a reference for resolving nitrogen pollution in aquaculture pond sediments.

Abstract Maintaining a healthy and functional mitochondrial network is crucial for cell survival and function. Protein misfolding and dysfunction are particularly prevalent in them due to physiological adaptations and stress conditions. For mitochondria to function properly, multiple quality control systems have evolved to ensure that there are enough mitochondria to meet cells’ needs, damaged mitochondrial proteins or mitochondrial parts can be eliminated using these pathways. Several mechanisms control mitochondrial quality, including protein, organelle, and cellular levels. As the extensive study of canonical mitochondrial quality‐mitophagy, this paper reviews the processes and mechanisms of mitochondrial quality control independent of autophagy, including mitochondrial protein and DNA degradation, mitochondria‐derived vesicles and mitochondria‐derived compartments, mitochondrial secretion, tunneling nanotubes, mitocytosis, and mitolysosome exocytosis. Understanding these novel quality control pathways may provide insights into mitochondrial homeostasis and for developing targeted treatments for diseases where these systems fail.

The hydrodynamic conditions of rivers affect fish habitats by influencing parameters such as river bottom topography. Ecological restoration projects change the water morphological characteristics of rivers. Here, water flow characteristics of the upper Yangtze River before and after the construction of a restoration project were analyzed using the computational fluid dynamics simulation method. The longitudinal diversion dam could divide the river into two flow velocity zones, and the outer flow is similar to the original river with a flow velocity of 0.75 m/s. However, flow velocity on the inner side of the river was about 0.25 m/s, forming a larger buffer area. The eddy became more diversified and stable, with a high eddy viscosity coefficient and less fluctuations, at 9 Pa·s; this was conducive to fish aggregation and spawning. At different depths, large gradient differences were observed between the inner and outer sides of the longitudinal diversion dam, and the turbulent current and upward flow of the inner side were obvious; this was more favorable to the aggregation of different fish species. The longitudinal dam body was under a pressure of about 200.2 Pa at the same flow rate; this was significantly lower than the pressure on the transverse dam body. The field flow test and fish survey data showed that the error rate of the simulation using the RNG turbulent model was less than 10% compared with actual mapping. After the restoration of fish habitats by the longitudinal diversion dam, the number of fish species in the area increased from 40 to 49; The density of fish in the water increased from 71.40 fish per 1,000 m2 before the project to 315.70 fish per 1,000 m2 after the project. These results can provide a reference for the rapid assessment of water morphology and fish habitat restoration in the future.

The mechanism of improving the anaerobic fermentation performance of waste active sludge by using dielectric barrier discharge (DBD) plasma pretreatment technology was investigated. The maximum accumulation of short-chain fatty acids (SCFAs) was observed on the 7th day of anaerobic fermentation when the DBD power was 76.50 W, which was 1726.70 mg COD/L, 1.50 times of the control group. The ratio of acetic acid in DBD group was 9.30% higher than that in the control. Further mechanism research indicated that DBD pretreatment can destroy the structure of extracellular polymer substances and release organic substances such as protein and polysaccharide. The dissolved organic matter analysis indicated that the DBD technique could increase the release of biodegradable organics (eg., tyrosine proteins, soluble microbial by-products), thus accelerate the biotransformation of organic substance. Bacterial community structure analysis showed that the increase in the abundance of Firmicutes and Bacteroidetes and the decrease in the abundance of Proteobacteria in DBD group were beneficial to the accumulation of SCFAs. Besides, further archaeal analysis indicated that the decrease of Methanosaeta sp. and Methanosarcina sp. abundance in the DBD group facilitate acetic acid accumulation. This study demonstrated that the DBD technique can be used as an effective and potential pretreatment method to improve sludge anaerobic fermentation performance.

This study examined the factors that affect the attitude and behavioral intentions toward electronic sports (eSports) among students of higher education institutions based on the technology acceptance model (TAM). The conditional impact of preventive regulatory focus was analyzed in various aspects developed on the regulatory focus theory. These aspects comprised of perceived usefulness, perceived ease of use, and perceived risk on the attitude toward eSports. Accordingly, data were collected from 293 students of higher education institutions in China's Henan Province, presenting a 54.56% response rate. The PLS-SEM analysis was subsequently implemented to confirm the proposed hypotheses. The empirical findings confirmed the significant positive impact of perceived usefulness and perceived ease of use on the attitude toward eSports. However, perceived risk negatively affected the attitude toward eSports. Meanwhile, the findings on the moderating hypotheses found a negligible impact on preventive regulatory focus. This impact was found explicitly on the perceived usefulness-perceived ease of use link with attitude toward eSports. However, the preventive regulatory focus negatively moderated the perceived risk attitude toward eSports. Finally, the implication and limitations were illustrated at the end of the paper.

The excessive ammonia produced in pond aquaculture processes cannot be ignored. In this review, we present the distribution and diversity of ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing bacteria (AnAOB) in the pond environment. Combined with environmental conditions, we analyze the advantages of AOA and AnAOB in aquaculture water treatment and discuss the current situation of pond water treatment engineering involving these microbes. AOA and AnAOB play an important role in the nitrogen removal process of aquaculture pond water, especially in seasonal low temperatures and anoxic sediment layers. Finally, we prospect the application of bioreactors to purify pond aquaculture water using AOA and AnAOB, in autotrophic nitrogen removal, which can reduce the production of greenhouse gases (such as nitrous oxide) and is conducive to the development of environmentally sustainable pond aquaculture.

Summary: We describe a fluorescence recovery after photobleaching (FRAP) protocol for assessing the dynamics of heterochromatin/euchromatin and identifying chromatin relaxers for cell fate transition. Here, we developed a system to track heterochromatin foci with HP1α-cherry and performed FRAP assay of H1-GFP to analyze the dynamics of heterochromatin and euchromatin during somatic cell reprogramming. This protocol is used to screen factors that impact chromatin structure, which could also be used to identify chromatin relaxers and repressors in various cell fate transitions.For complete details on the use and execution of this protocol, please refer to Chen et al. (2016) and Chen et al. (2020).

This study investigated the synergetic effect of the combined calcium peroxide (CaO2) and microwave (MW) treatment on waste active sludge dewatering properties and organic contaminants’ removal. The optimal sludge dewaterability was obtained at CaO2 (20 mg/gVSS)/MW (70°C), and the capillary suction time decreased by 52% compared with raw sludge. Further investigation indicated that total extracellular polymeric substances (EPS), tightly bound EPS, total protein, and protein present in tightly bound EPS were closely correlated with sludge dewaterability. Tryptophan, aromatic protein–like substances and humic acid–like substances were the key compounds that affect sludge dewaterability. The charge neutralization and bridge effect of cation ions were strengthened when combined with MW irradiation. In addition, it was revealed that MW facilitated CaO2 to produce more hydroxyl and superoxide anion radicals. This study confirmed CaO2/MW to be an effective way to improve sludge dewatering and remove organic pollutants from sludge.

In this study, a group of large-scale biofloc shrimp culturing facilities were designed. The bioflocs were domesticated by continuously reducing the ratio of carbon to feed. The bacterial community diversity on the 20th, 40th, 60th, and 80th days was analyzed by high-throughput sequencing technology. The results showed that the biofloc content (0~16.8 ± 4.3) mL/L, TSS concentration (0~247.46 ± 27.3) mL/L, total ammonia nitrogen concentration (0~0.28 ± 0.052) mg/L, nitrite nitrogen concentration (0~4.13 ± 1.42) mg/L, nitrate nitrogen concentration (108.57 ± 19.6) mg/L were all within the safe concentration range of Litopenaeus vannamei. With the progress of reducing carbon input, the Chao1 index, the number of operational taxonomic units, and the Shannon index increased significantly. The number of OTUs of B80 (572.36 ± 13.26) was significantly higher than that of B60 (489.69 ± 12.97), B40 (423.35 ± 18.46) and B20 (407.67 ± 15.65) (p < 0.05). The Chao1 index of B80 (768.58 ± 36.96) was significantly higher than that of B60 (646.8 ± 52.53), B40 (569.7 ± 46.53) and B20 (516.3 ± 21.35) (p < 0.05). The Shannon index of B80 (5.63 ± 0.16) was higher than that of B60 (4.85 ± 0.13), B40 (4.68 ± 0.21) and B20 (3.65 ± 0.22), with significant difference (p < 0.05). At the end of the experiment, the domestication formed a micro-ecosystem with Proteobacteria as the carrier (46.98 ± 15.82%), Chloroflexi as the skeleton (2.2 ± 0.36%), Nitrospirae (1.35 ± 0.26%) as the main water treatment functional bacteria, and other bacteria as auxiliary nitrogen and phosphorus removal; At the genus level, unclassified_f_Rhodobacteracea (22.97 ± 3.82%), Ruegeria (10.35 ± 1.26%), Muricauda (5.73 ± 0.61%), Algoriphagus (3.75% ± 0.85%) and Nitrospira (1.56 ± 0.56%) are the dominant bacteria. Under the synergistic effect of the above bacteria, the biofloc system remains relatively stable. The survival rate and unit yield of shrimp were (65.32 ± 6.85)% and (4.15 ± 1.58) kg/m3, respectively.

Summary: Somatic cells can be reprogrammed into induced pluripotent stem cells (iPSCs) by defined factors. Here, we describe a protocol for imaging mitochondrial permeability transition pore (mPTP) opening in reprogramming of somatic cells using a confocal microscope. We also describe a method to sort high and low mPTP opening somatic cells by calcein fluorescence and reprogram these sorted cells to iPSCs. These protocols are also suitable for imaging mPTP opening and uncovering the mechanisms of mPTP function in other cell fate conversions.For complete details on the use and execution of this protocol, please refer to Ying et al. (2018).

Ibrutinib is a small molecule drug that targets Bruton's tyrosine kinase in B‐cell malignancies and is highly efficient at killing mantle cell lymphoma and chronic lymphocytic leukemia. However, the anti‐cancer activity of ibrutinib against solid tumors, such as non‐small cell lung cancer (NSCLC), remains low. To improve the cytotoxicity of ibrutinib towards lung cancer, we synthesized a series of ibrutinib derivatives, of which Ibr‐7 exhibited superior anti‐cancer activity to ibrutinib, especially against epithelial growth factor receptor (EGFR) wild‐type NSCLC cell lines. Ibr‐7 was observed to dramatically suppress the mammalian target of Rapamycin complex 1 (mTORC1)/S6 signaling pathway, which is only slightly affected by ibrutinib, thus accounting for the superior anti‐cancer activity of Ibr‐7 towards NSCLC. Ibr‐7 was shown to overcome the elevation of Mcl‐1 caused by ABT‐199 mono‐treatment, and thus exhibited a significant synergistic effect when combined with ABT‐199. In conclusion, we used a molecular substitution method to generate a novel ibrutinib derivative, termed Ibr‐7, which exhibits enhanced anti‐cancer activity against NSCLC cells as compared with the parental compound.

The complete mitochondrial genome sequence of Acheilognathus hypselonotus is firstly described in this article. The total length of the mitogenome is 16,706 bp. It contains 13 protein-coding genes, 22 tRNA genes and 2 ribosomal RNA genes. The overall base composition of the H-strand is 29.03% A, 25.6% C, 28.13% T, and 17.25% G, with an A＋T bias of 57.16%. The phylogenetic analysis result showed that the A. hypselonotus, A. typus and A. macropterus were a close relationship.

Abstract Mitochondrial DNA depletion syndrome (MDS) is a group of severe inherited disorders caused by mutations in genes, such as deoxyribonucleoside kinase (DGUOK). A great majority of DGUOK mutant MDS patients develop iron overload progressing to severe liver failure. However, the pathological mechanisms connecting iron overload and hepatic damage remains uncovered. Here, two patients’ skin fibroblasts are reprogrammed to induced pluripotent stem cells (iPSCs) and then corrected by CRISPR/Cas9. Patient‐specific iPSCs and corrected iPSCs‐derived high purity hepatocyte organoids (iHep‐Orgs) and hepatocyte‐like cells (iHep) are generated as cellular models for studying hepatic pathology. DGUOK mutant iHep and iHep‐Orgs, but not control and corrected one, are more sensitive to iron overload‐induced ferroptosis, which can be rescued by N‐Acetylcysteine (NAC). Mechanically, this ferroptosis is a process mediated by nuclear receptor co‐activator 4 (NCOA4)‐dependent degradation of ferritin in lysosome and cellular labile iron release. This study reveals the underlying pathological mechanisms and the viable therapeutic strategies of this syndrome, and is the first pure iHep‐Orgs model in hereditary liver diseases.

Human alterations, such as hydropower development, are intensive and have negative impacts on fish and ecological environment. However, fish habitat restoration projects based on geographical morphology have not yet been reported in the Yangtze River. To explore engineering measures used to restore fish habitat structure and function, a mesoscale fish habitat restoration project was designed and constructed, which included restructuring of habitat topography in the fluctuating area. Three-dimensional computational fluid dynamics (CFD) models were used to simulate and predict the project’s effect on the hydromorphology prior to construction, and an Acoustic Doppler current profiler (ADCP) was deployed to test and verify actual flow field improvement. Short-term effects on fish species sorting and their main ecological traits were examined. The results showed that vorticity and flow heterogeneity in the river reach increased, suggesting that the restoration projects created flow conditions favourable to indigenous fishes. Thus, pre-optimization using computer simulation is an essential and scientific procedure that could be used to increase the probability of river restoration success. The promotion of habitat diversity had strong effects on fish aggregation, especially for the rare and endemic fish species targeted. Fish abundance, catch biomass and species richness increased by 98.1%, 62.7% and 22.5%, respectively. There were significant differences (p < 0.05) in species number and catch abundance before and after the project. The number of rare and endemic fish species increased from four to nine species. Overall, this research provides evidence that the promotion of habitat hydraulic morphology heterogeneity accelerates the recovery of fish diversity and biomass.

Summary: Evolutionarily conserved SCAN (named after SRE-ZBP, CTfin51, AW-1, and Number 18 cDNA)-domain-containing zinc finger transcription factors (ZSCAN) have been found in both mouse and human genomes. Zscan4 is transiently expressed during zygotic genome activation (ZGA) in preimplantation embryos and induced pluripotent stem cell (iPSC) reprogramming. However, little is known about the mechanism of Zscan4 underlying these processes of cell fate control. Here, we show that Zscan4f, a representative of ZSCAN proteins, is able to recruit Tet2 through its SCAN domain. The Zscan4f-Tet2 interaction promotes DNA demethylation and regulates the expression of target genes, particularly those encoding glycolytic enzymes and proteasome subunits. Zscan4f regulates metabolic rewiring, enhances proteasome function, and ultimately promotes iPSC generation. These results identify Zscan4f as an important partner of Tet2 in regulating target genes and promoting iPSC generation and suggest a possible and common mechanism shared by SCAN family transcription factors to recruit ten-eleven translocation (TET) DNA dioxygenases to regulate diverse cellular processes, including reprogramming.

Optic Atrophy 1 (OPA1) has well-established roles in both mitochondrial fusion and apoptotic crista remodeling and is required for the maintenance and distribution of mitochondrial DNA (mtDNA), which are essential for energy metabolism. However, the relationship between OPA1 and mitochondrial metabolism and the underlying mechanisms remain unclear. Here, we show that OPA1-Exon4b modulates mitochondrial respiration and rescues inner mitochondrial membrane potential (Δψm), independent of mitochondrial fusion. OPA1-Exon4b is required for the maintenance of normal TFAM distribution and enhances mtDNA transcription by binding the D-loop of mtDNA. Finally, we show that mRNA levels of OPA1 isoforms containing Exon4b are specifically downregulated in hepatocellular carcinoma (HCC), leading to a reduction in Δψm. Thus, our study demonstrates a novel mitochondrial functional self-recovery pathway involving enhanced mtDNA transcription-mediated recovery of mitochondrial respiratory chain proteins. This mitochondrial fusion-independent pathway may contribute to mitochondrial multi-functional switches in tumorigenesis.

Abstract An approach to culturing attached and suspended forms of Rhodopseudomonas faecalis by using compound fish feed with tap water in transparent containers is reported in this study. The ratio of fish feed to tap water was 14.3–50.8 g/L, and no other inoculum or substances were added during the culture process. When the ratio of fish feed to tap water was 14.3 g/L, the highest total nitrogen, total phosphorus, and total dissolved carbon content recorded in the water in the containers were approximately 730 mg/L, 356 mg/L, and 1,620 mg/L, respectively, during the process of feed decay. Comamonas, Rhodopseudomonas, and Clostridium successively dominated during the culture process. Rhodopseudomonas was the most common dominant genus in both the attached and suspended forms when the water was dark red, and the relative operational taxonomic unit abundance reached 80‒89% and 24.8%, respectively. The dominant species was R. faecalis. The maximum thickness of attached bacteria and the biomass of attached Rhodopseudomonas reached up to 0.56 mm and 7.5 mg/cm2, respectively. This study provides a method for the mass culture of Rhodopseudomonas by using the fermentation of aquatic compound fish feed.

The habitat and feeding environment of freshwater fish in freshwater lakes have been destroyed, with the problem of miniaturization and simplification of catches being serious. An artificial reef is an effective technical measure to protect and proliferate offshore fishery resources, but little research has been conducted on its application in freshwater lakes. A small artificial reef for freshwater lakes was designed according to the water depth of the lake and the habits of benthic fish. The artificial reef is composed of biomass modules, each of which is 900 × 120 mm. The community structure of phytoplankton around the artificial reef and its adjacent waters was studied. The results showed that 77 species from seven phyla were identified, with a high number of species from the Chlorophyceae. In terms of density composition, the density of cyanobacteria decreased month by month, while the phylum Chlorophyta and Cryptophyta increased first and then decreased. As for biomass composition, Chlorophyta and Cryptophyta increased first and then decreased. RDA analysis showed that water temperature, dissolved oxygen, and total phosphorus were the main influencing factors. To sum up, the artificial reef can improve the algae phase in the surrounding water column, inhibit the growth and reproduction of cyanobacteria to a certain extent, and have a significant enrichment and promotion effect on diatoms. Artificial fish reef affects the phytoplankton community structure of the surrounding water bodies mainly through the absorption of phosphorus nutrients. Artificial reefs can be popularized and applied in freshwater lakes to provide foraging and shelter for benthic fish in the lake.

In present study, the mitochondrial genome (mitogenome) of Channa gachua was determined and the phylogenetic relationship of Channidae fish was reconsidered. The mitogenome of the C. gachua is 16547 bp in length, containing 13 protein coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosome RNA genes (rRNAs), a control region (D-loop) and an origin region of replication on the light-strand (OL). The overall nucleotide composition is 28.32% A, 26.58% T, 29.41% C, 15.69% G, with 54.90% AT, respectively. Phylogenetic analyses revealed that C. gachua belongs to the genus Channa and shares a close relationship with C. marulius and C. striata.

In order to understand the mechanisms of conversion between different algal dominance, an experiment was performed in a greenhouse from 22 June to 10 July 2011. The experiment included a treatment group subjected to three instances of nutrient enrichment and a control with no nutrient enrichment. The initial water was dominated by Ankistrodesmus of Chlorophyta. The average water temperature at 08:30 h and 14:00 h during the experiment was 31.6°C and 34.6°C, respectively. The results showed that the total nitrogen (TN), total phosphorus (TP), dissolved total nitrogen (DTN), dissolved total phosphorus (DTP), and soluble reactive phosphorus (SRP) concentrations in the treatment were significantly higher than in the control (P < 0.05). However, the TN/TP and DTN/DTP in the control was higher than in the treatment (P < 0.05). The dominant algae in the control did not change during the experiment, while the dominant algae in the treatment switched to Planktothrix of Cyanophyta on day 9. The chlorophyll a (Chl-a), wet weight of all algae, wet weight of Cyanophyta, and percentage of Cyanophyta in the control were all significantly lower than in the treatment (P < 0.05). Amounts of zooplankton, especially rotifers, were present at the end of the experimental period. The density of rotifers between the control and treatment was not significantly different (P > 0.05), while the copepod density in the treatment was higher than in the control (P < 0.05). We conclude that green algae dominance quickly switches to cyanobacteria dominance after nutrient enrichment in a greenhouse with elevated temperature.

Bream pond aquaculture plays a very important role in China's aquaculture industry and is the main source of aquatic products. To regulate and control pond water quality and sediment, a movable solar pond aquaculture water quality regulation machine (SMWM) was designed and used. This machine is solar-powered and moves on water, and its primary components are a solar power supply device, a sediment lifting device, a mechanism for walking on the water's surface and a control system. The solar power supply device provides power for the machine, and the water walking mechanism drives the machine's motion on the water. The sediment lifting device orbits the main section of the machine and affects a large area of the pond. Tests of the machine's mechanical properties revealed that the minimum illumination necessary for the SMWM to function is 13,000 Lx and that its stable speed on the water is 0.02-0.03 m/s. For an illumination of 13,000-52,500 Lx, the sediment lifting device runs at 0.13-0.35 m/s, and its water delivery capacity is 110-208 m(3)/h. The sediment lifting device is able to fold away, and the angle of the suction chamber can be adjusted, making the machine work well in ponds at different water depths from 0.5 m to 2 m. The optimal distance from the sediment lifting device to the bottom of the pond is 10-15 cm. In addition, adjusting the length of the connecting rod and the direction of the traction rope allows the SMWM to work in a pond water area greater than 80%. The analysis of water quality in Wuchang bream (Parabramis pekinensis) and silver carp (Hypophthalmichthys molitrix) culture ponds using the SMWM resulted in decreased NH3(+)-N and available phosphorus concentrations and increased TP concentrations. The TN content and the amount of available phosphorus in the sediment were reduced. In addition, the fish production showed that the SMWM enhanced the yields of Wuchang bream and silver carp by more than 30% and 24%, respectively. These results indicate that the SMWM may be suitable for Wuchang bream pond aquaculture in China and that it can be used in pond aquaculture for regulating and controlling water quality.

Owing to the limitations of the imaging principle as well as the properties of imaging systems, infrared images often have some drawbacks, including low resolution, a lack of detail, and indistinct edges. Therefore, it is essential to improve infrared image quality. Considering the information of neighbors, a description of sparse edges, and by avoiding staircase artifacts, a new super-resolution reconstruction (SRR) method is proposed for infrared images, which is based on fractional order total variation (FTV) with quaternion total variation and the L p quasinorm. Our proposed method improves the sparsity exploitation of FTV, and efficiently preserves image structures. Furthermore, we adopt the plug-and-play alternating direction method of multipliers (ADMM) and the fast Fourier transform (FFT) theory for the proposed method to improve the efficiency and robustness of our algorithm; in addition, an accelerated step is adopted. Our experimental results show that the proposed method leads to excellent performances in terms of an objective evaluation and the subjective visual effect.

Mitochondria constantly fuse and divide for mitochondrial inheritance and functions. Here, we identified a distinct type of naturally occurring fission, tail-autotomy fission, wherein a tail-like thin tubule protrudes from the mitochondrial body and disconnects, resembling autotomy. Next, utilizing an optogenetic mitochondria-specific mechanostimulator, we revealed that mechanical tensile force drives tail-autotomy fission. This force-induced fission involves DRP1/MFF and endoplasmic reticulum tubule wrapping. It redistributes mitochondrial DNA, producing mitochondrial fragments with or without mitochondrial DNA for different fates. Moreover, tensile force can decouple outer and inner mitochondrial membranes, pulling out matrix-excluded tubule segments. Subsequent tail-autotomy fission separates the matrix-excluded tubule segments into matrix-excluded mitochondrial-derived vesicles (MDVs) which recruit Parkin and LC3B, indicating the unique role of tail-autotomy fission in segregating only outer membrane components for mitophagy. Sustained force promotes fission and MDV biogenesis more effectively than transient one. Our results uncover a mechanistically and functionally distinct type of fission and unveil the role of tensile forces in modulating fission and MDV biogenesis for quality control, underscoring the heterogeneity of fission and mechanoregulation of mitochondrial dynamics. [ABSTRACT FROM AUTHOR]