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3. Why is the winner the best?

Author

Eisenmann, Matthias, Reinke, Annika, Weru, Vivienn, Tizabi, Minu Dietlinde, Isensee, Fabian, Adler, Tim J., Ali, Sharib, Andrearczyk, Vincent, Aubreville, Marc, Baid, Ujjwal, Bakas, Spyridon, Balu, Niranjan, Bano, Sophia, Bernal, Jorge, Bodenstedt, Sebastian, Casella, Alessandro, Cheplygina, Veronika, Daum, Marie, de Bruijne, Marleen, Depeursinge, Adrien, Dorent, Reuben, Egger, Jan, Ellis, David G., Engelhardt, Sandy, Ganz, Melanie, Ghatwary, Noha, Girard, Gabriel, Godau, Patrick, Gupta, Anubha, Hansen, Lasse, Harada, Kanako, Heinrich, Mattias, Heller, Nicholas, Hering, Alessa, Huaulmé, Arnaud, Jannin, Pierre, Kavur, Ali Emre, Kodym, Oldřich, Kozubek, Michal, Li, Jianning, Li, Hongwei, Ma, Jun, Martín-Isla, Carlos, Menze, Bjoern, Noble, Alison, Oreiller, Valentin, Padoy, Nicolas, Pati, Sarthak, Payette, Kelly, Rädsch, Tim, Rafael-Patiño, Jonathan, Bawa, Vivek Singh, Speidel, Stefanie, Sudre, Carole H., van Wijnen, Kimberlin, Wagner, Martin, Wei, Donglai, Yamlahi, Amine, Yap, Moi Hoon, Yuan, Chun, Zenk, Maximilian, Zia, Aneeq, Zimmerer, David, Aydogan, Dogu Baran, Bhattarai, Binod, Bloch, Louise, Brüngel, Raphael, Cho, Jihoon, Choi, Chanyeol, Dou, Qi, Ezhov, Ivan, Friedrich, Christoph M., Fuller, Clifton, Gaire, Rebati Raman, Galdran, Adrian, Faura, Álvaro García, Grammatikopoulou, Maria, Hong, SeulGi, Jahanifar, Mostafa, Jang, Ikbeom, Kadkhodamohammadi, Abdolrahim, Kang, Inha, Kofler, Florian, Kondo, Satoshi, Kuijf, Hugo, Li, Mingxing, Luu, Minh Huan, Martinčič, Tomaž, Morais, Pedro, Naser, Mohamed A., Oliveira, Bruno, Owen, David, Pang, Subeen, Park, Jinah, Park, Sung-Hong, Płotka, Szymon, Puybareau, Elodie, Rajpoot, Nasir, Ryu, Kanghyun, Saeed, Numan, Shephard, Adam, Shi, Pengcheng, Štepec, Dejan, Subedi, Ronast, Tochon, Guillaume, Torres, Helena R., Urien, Helene, Vilaça, João L., Wahid, Kareem Abdul, Wang, Haojie, Wang, Jiacheng, Wang, Liansheng, Wang, Xiyue, Wiestler, Benedikt, Wodzinski, Marek, Xia, Fangfang, Xie, Juanying, Xiong, Zhiwei, Yang, Sen, Yang, Yanwu, Zhao, Zixuan, Maier-Hein, Klaus, Jäger, Paul F., Kopp-Schneider, Annette, and Maier-Hein, Lena

Subjects
Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning
Abstract

International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do they really generate scientific progress? What are common and successful participation strategies? What makes a solution superior to a competing method? To address this gap in the literature, we performed a multi-center study with all 80 competitions that were conducted in the scope of IEEE ISBI 2021 and MICCAI 2021. Statistical analyses performed based on comprehensive descriptions of the submitted algorithms linked to their rank as well as the underlying participation strategies revealed common characteristics of winning solutions. These typically include the use of multi-task learning (63%) and/or multi-stage pipelines (61%), and a focus on augmentation (100%), image preprocessing (97%), data curation (79%), and postprocessing (66%). The "typical" lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning. Two core general development strategies stood out for highly-ranked teams: the reflection of the metrics in the method design and the focus on analyzing and handling failure cases. According to the organizers, 43% of the winning algorithms exceeded the state of the art but only 11% completely solved the respective domain problem. The insights of our study could help researchers (1) improve algorithm development strategies when approaching new problems, and (2) focus on open research questions revealed by this work., Comment: accepted to CVPR 2023

Published
2023

4. Fetal Brain Tissue Annotation and Segmentation Challenge Results

Author

Payette, Kelly, Li, Hongwei, de Dumast, Priscille, Licandro, Roxane, Ji, Hui, Siddiquee, Md Mahfuzur Rahman, Xu, Daguang, Myronenko, Andriy, Liu, Hao, Pei, Yuchen, Wang, Lisheng, Peng, Ying, Xie, Juanying, Zhang, Huiquan, Dong, Guiming, Fu, Hao, Wang, Guotai, Rieu, ZunHyan, Kim, Donghyeon, Kim, Hyun Gi, Karimi, Davood, Gholipour, Ali, Torres, Helena R., Oliveira, Bruno, Vilaça, João L., Lin, Yang, Avisdris, Netanell, Ben-Zvi, Ori, Bashat, Dafna Ben, Fidon, Lucas, Aertsen, Michael, Vercauteren, Tom, Sobotka, Daniel, Langs, Georg, Alenyà, Mireia, Villanueva, Maria Inmaculada, Camara, Oscar, Fadida, Bella Specktor, Joskowicz, Leo, Weibin, Liao, Yi, Lv, Xuesong, Li, Mazher, Moona, Qayyum, Abdul, Puig, Domenec, Kebiri, Hamza, Zhang, Zelin, Xu, Xinyi, Wu, Dan, Liao, KuanLun, Wu, YiXuan, Chen, JinTai, Xu, Yunzhi, Zhao, Li, Vasung, Lana, Menze, Bjoern, Cuadra, Meritxell Bach, and Jakab, Andras

Subjects
Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition
Abstract

In-utero fetal MRI is emerging as an important tool in the diagnosis and analysis of the developing human brain. Automatic segmentation of the developing fetal brain is a vital step in the quantitative analysis of prenatal neurodevelopment both in the research and clinical context. However, manual segmentation of cerebral structures is time-consuming and prone to error and inter-observer variability. Therefore, we organized the Fetal Tissue Annotation (FeTA) Challenge in 2021 in order to encourage the development of automatic segmentation algorithms on an international level. The challenge utilized FeTA Dataset, an open dataset of fetal brain MRI reconstructions segmented into seven different tissues (external cerebrospinal fluid, grey matter, white matter, ventricles, cerebellum, brainstem, deep grey matter). 20 international teams participated in this challenge, submitting a total of 21 algorithms for evaluation. In this paper, we provide a detailed analysis of the results from both a technical and clinical perspective. All participants relied on deep learning methods, mainly U-Nets, with some variability present in the network architecture, optimization, and image pre- and post-processing. The majority of teams used existing medical imaging deep learning frameworks. The main differences between the submissions were the fine tuning done during training, and the specific pre- and post-processing steps performed. The challenge results showed that almost all submissions performed similarly. Four of the top five teams used ensemble learning methods. However, one team's algorithm performed significantly superior to the other submissions, and consisted of an asymmetrical U-Net network architecture. This paper provides a first of its kind benchmark for future automatic multi-tissue segmentation algorithms for the developing human brain in utero., Comment: Results from FeTA Challenge 2021, held at MICCAI; Manuscript submitted

Published
2022
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9. CDFSIP Feature Selection Algorithm Based on ADA-DPC

Author

He, Yuhu, Wu, Zhaozhong, Xie, Juanying, Filipe, Joaquim, Editorial Board Member, Ghosh, Ashish, Editorial Board Member, Prates, Raquel Oliveira, Editorial Board Member, Zhou, Lizhu, Editorial Board Member, Zhang, Songmao, editor, and Zhang, Yonggang, editor

Published
2023
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12. Fetal brain tissue annotation and segmentation challenge results

Author

Payette, Kelly, Li, Hongwei Bran, de Dumast, Priscille, Licandro, Roxane, Ji, Hui, Siddiquee, Md Mahfuzur Rahman, Xu, Daguang, Myronenko, Andriy, Liu, Hao, Pei, Yuchen, Wang, Lisheng, Peng, Ying, Xie, Juanying, Zhang, Huiquan, Dong, Guiming, Fu, Hao, Wang, Guotai, Rieu, ZunHyan, Kim, Donghyeon, Kim, Hyun Gi, Karimi, Davood, Gholipour, Ali, Torres, Helena R., Oliveira, Bruno, Vilaça, João L., Lin, Yang, Avisdris, Netanell, Ben-Zvi, Ori, Bashat, Dafna Ben, Fidon, Lucas, Aertsen, Michael, Vercauteren, Tom, Sobotka, Daniel, Langs, Georg, Alenyà, Mireia, Villanueva, Maria Inmaculada, Camara, Oscar, Fadida, Bella Specktor, Joskowicz, Leo, Weibin, Liao, Yi, Lv, Xuesong, Li, Mazher, Moona, Qayyum, Abdul, Puig, Domenec, Kebiri, Hamza, Zhang, Zelin, Xu, Xinyi, Wu, Dan, Liao, Kuanlun, Wu, Yixuan, Chen, Jintai, Xu, Yunzhi, Zhao, Li, Vasung, Lana, Menze, Bjoern, Cuadra, Meritxell Bach, and Jakab, Andras

Published
2023
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13. Adaptive K-means Algorithm Combining Nearest-Neighbor Matrix and Local Density

Author

Ailiminuer·Kuerban, XIE Juanying, YAO Ruoxia

Subjects
adaptive k-means clustering algorithm, density peak principle, nearest-neighbor principle, local density, Electronic computers. Computer science, QA75.5-76.95
Abstract

To overcome the deficiencies of traditional K-means algorithms which are sensitive to the initial cluster centers and outliers, and their variants introducing densities, which need giving arbitrary parameters, this paper proposes an adaptive K-means clustering algorithm combining the nearest neighbor matrix and local density. Ins-pired by the nearest-neighbors and the density peaks, the adjacency matrix is constructed by introducing the distance difference between objects. Then the local density is calculated without any parameters except for the adjacency matrix. After that, the initial centers and the number of clusters of K-means are simultaneously determined by using the nearest-neighbor matrix and local density, and the rest objects are assigned as well. Experiments on synthetic datasets, and on real world datasets from UCI machine learning repository, and the comparisons with traditional K-means algorithm, and the improved K-means algorithms based on outliers or densities all demonstrate that the pro-posed adaptive K-means algorithm is robust to outliers on synthetic datasets, and obtains more accurate clustering results for real world datasets from UCI machine learning repository.

Published
2023
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15. The Differential Gene Detecting Method for Identifying Leukemia Patients

Author

Wang, Mingzhao, Jiang, Weiliang, Xie, Juanying, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Fujita, Hamido, editor, Fournier-Viger, Philippe, editor, Ali, Moonis, editor, and Wang, Yinglin, editor

Published
2022
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16. The Head and Neck Tumor Segmentation Based on 3D U-Net

Author

Xie, Juanying, Peng, Ying, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Andrearczyk, Vincent, editor, Oreiller, Valentin, editor, Hatt, Mathieu, editor, and Depeursinge, Adrien, editor

Published
2022
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17. The Automatic Identification of Butterfly Species

Author

Xie, Juanying, Hou, Qi, Shi, Yinghuan, Peng, Lv, Jing, Liping, Zhuang, Fuzhen, Zhang, Junping, Tang, Xiaoyang, and Xu, Shengquan

Subjects
Computer Science - Computer Vision and Pattern Recognition, 68T10
Abstract

The available butterfly data sets comprise a few limited species, and the images in the data sets are always standard patterns without the images of butterflies in their living environment. To overcome the aforementioned limitations in the butterfly data sets, we build a butterfly data set composed of all species of butterflies in China with 4270 standard pattern images of 1176 butterfly species, and 1425 images from living environment of 111 species. We propose to use the deep learning technique Faster-Rcnn to train an automatic butterfly identification system including butterfly position detection and species recognition. We delete those species with only one living environment image from data set, then partition the rest images from living environment into two subsets, one used as test subset, the other as training subset respectively combined with all standard pattern butterfly images or the standard pattern butterfly images with the same species of the images from living environment. In order to construct the training subset for FasterRcnn, nine methods were adopted to amplifying the images in the training subset including the turning of up and down, and left and right, rotation with different angles, adding noises, blurring, and contrast ratio adjusting etc. Three prediction models were trained. The mAP (Mean Average prediction) criterion was used to evaluate the performance of the prediction model. The experimental results demonstrate that our Faster-Rcnn based butterfly automatic identification system performed well, and its worst mAP is up to 60%, and can simultaneously detect the positions of more than one butterflies in one images from living environment and recognize the species of those butterflies as well., Comment: 9 pages, in Chinese, 8 figures

Published
2018

18. XR-MSF-Unet: Automatic Segmentation Model for COVID-19 Lung CT Images

Author

XIE Juanying, ZHANG Kaiyun

Subjects
covid-19, ct image segmentation, u-net, xr module, msf module, Electronic computers. Computer science, QA75.5-76.95
Abstract

The COVID-19 epidemic has threatened the human being. The automatic and accurate segmentation for the infected area of the COVID-19 CT images can help doctors to make correct diagnosis and treatment in time. However, it is very challenging to achieve perfect segmentation due to the diffuse infections of the COVID-19 to the patient lungs and irregular shapes of the infected areas and very similar infected areas to other lung tissues. To tackle these challenges, the XR-MSF-Unet model is proposed in this paper for segmenting the COVID-19 lung CT images of patients. The XR (X ResNet) convolution module is proposed in this model to replace the two-layer convolution operations of U-Net, so as to extract more informative features for achieving good segmentation results by multiple branches of XR. The plug and play attention mechanism module MSF (multi-scale features fusion module) is proposed in XR-MSF-Unet to fuse multi-scale features from different scales of reception fields, global, local and spatial features of CT images, so as to strengthen the detail segmentation effect of the model. Extensive experiments on the public COVID-19 CT images demonstrate that the proposed XR module can strengthen the capability of the XR-MSF-Unet model to extract effective features, and the MSF module plus XR module can effectively improve the segmentation capability of the XR-MSF-Unet model for the infected areas of the COVID-19 lung CT images. The proposed XR-MSF-Unet model obtains good segmentation results. Its segmentation perfor-mance is superior to that of the original U-Net model by 3.21, 5.96, 1.22 and 4.83 percentage points in terms of Dice, IOU, F1-Score and Sensitivity, and it defeats other same type of models, realizing automatic segmentation to the COVID-19 lung CT images.

Published
2022
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20. The Head and Neck Tumor Segmentation Using nnU-Net with Spatial and Channel ‘Squeeze & Excitation’ Blocks

Author

Xie, Juanying, Peng, Ying, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Andrearczyk, Vincent, editor, Oreiller, Valentin, editor, and Depeursinge, Adrien, editor

Published
2021
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22. The Differential Feature Detection and the Clustering Analysis to Breast Cancers

Author

Xie, Juanying, Wu, Zhaozhong, Xia, Qin, Ding, Lijuan, Fujita, Hamido, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Fujita, Hamido, editor, Fournier-Viger, Philippe, editor, Ali, Moonis, editor, and Sasaki, Jun, editor

Published
2020
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24. Feature Selection With Discernibility and Independence Criteria

Author

Xie, Juanying, Wang, Mingzhao, Grant, Philip W., and Pedrycz, Witold

Abstract

Feature selection plays a significant role in data mining and machine learning. It is challenging to determine how many features are necessary to form an optimal feature subset. To address this challenge, an innovative visual 2D feature selection framework is introduced, in which the feature discernibility and independence are defined to evaluate its capability for classification and its relevance to other features, respectively. All features are represented in 2D space with discernibility as $x$x-axis and independence as $y$y-axis. The features located in the upper right corner represent high discernibility and high independence, so comprise the optimal feature subset. This leads to the formation of a family of feature selection algorithms. Three such algorithms are proposed in this paper referred to as FSDIE, FSDIR, and FSDIS (Feature Selection based on the Discernibility and the Independence, respectively, of Exponent, Reciprocal, and anti-Similarity). To speed-up these three algorithms, a clustering based feature preselection first eliminates some unrelated and redundant features. Extensive experiments on UCI datasets, face datasets and gene expression datasets demonstrate that these three 2D feature selection algorithms are superior to the state-of-the-art methods indicating the power of our 2D feature selection framework.

Published
2024
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26. An Adaptive Clustering Algorithm by Finding Density Peaks

Author

Xie, Juanying, Jiang, Weiliang, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Weikum, Gerhard, Series Editor, Geng, Xin, editor, and Kang, Byeong-Ho, editor

Published
2018
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27. Extreme Learning Machine Based Diagnosis Models for Erythemato-Squamous Diseases

Author

Xie, Juanying, Ji, Xinyuan, Wang, Mingzhao, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Weikum, Gerhard, Series Editor, Siuly, Siuly, editor, Lee, Ickjai, editor, Huang, Zhisheng, editor, Zhou, Rui, editor, Wang, Hua, editor, and Xiang, Wei, editor

Published
2018
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31. Granular Computing Combined with Support Vector Machines for Diagnosing Erythemato-Squamous Diseases

Author

Wang, Yongchao, Xie, Juanying, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Siuly, Siuly, editor, Huang, Zhisheng, editor, Aickelin, Uwe, editor, Zhou, Rui, editor, Wang, Hua, editor, Zhang, Yanchun, editor, and Klimenko, Stanislav, editor

Published
2017
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32. Clustering by Searching Density Peaks via Local Standard Deviation

Author

Xie, Juanying, Jiang, Weiliang, Ding, Lijuan, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Yin, Hujun, editor, Gao, Yang, editor, Chen, Songcan, editor, Wen, Yimin, editor, Cai, Guoyong, editor, Gu, Tianlong, editor, Du, Junping, editor, Tallón-Ballesteros, Antonio J., editor, and Zhang, Minling, editor

Published
2017
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34. Coordinating Discernibility and Independence Scores of Variables in a 2D Space for Efficient and Accurate Feature Selection

Author

Xie, Juanying, Wang, Mingzhao, Zhou, Ying, Li, Jinyan, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Huang, De-Shuang, editor, Han, Kyungsook, editor, and Hussain, Abir, editor

Published
2016
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35. Differential Feature Recognition of Breast Cancer Patients Based on Minimum Spanning Tree Clustering and F-statistics

Author

Xie, Juanying, Li, Ying, Zhou, Ying, Wang, Mingzhao, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Yin, Xiaoxia, editor, Geller, James, editor, Li, Ye, editor, Zhou, Rui, editor, Wang, Hua, editor, and Zhang, Yanchun, editor

Published
2016
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37. A Stable Gene Subset Selection Algorithm for Cancers

Author

Xie, Juanying, Gao, Hongchao, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Yin, Xiaoxia, editor, Ho, Kendall, editor, Zeng, Daniel, editor, Aickelin, Uwe, editor, Zhou, Rui, editor, and Wang, Hua, editor

Published
2015
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39. Fetal brain tissue annotation and segmentation challenge results

Author

Payette, Kelly; https://orcid.org/0000-0001-7041-0150, Li, Hongwei Bran; https://orcid.org/0000-0002-5328-6407, de Dumast, Priscille; https://orcid.org/0000-0003-0359-9365, Licandro, Roxane, Ji, Hui, Siddiquee, Md Mahfuzur Rahman, Xu, Daguang, Myronenko, Andriy, Liu, Hao, Pei, Yuchen, Wang, Lisheng, Peng, Ying, Xie, Juanying, Zhang, Huiquan, Dong, Guiming, Fu, Hao, Wang, Guotai, Rieu, ZunHyan, Kim, Donghyeon, Kim, Hyun Gi, Karimi, Davood, Gholipour, Ali, Torres, Helena R, Oliveira, Bruno, Vilaça, João L, Lin, Yang, Avisdris, Netanell, Ben-Zvi, Ori, Bashat, Dafna Ben, Fidon, Lucas; https://orcid.org/0000-0003-1450-1634, Menze, Bjoern; https://orcid.org/0000-0003-4136-5690, Jakab, András; https://orcid.org/0000-0001-6291-9889, et al, Payette, Kelly; https://orcid.org/0000-0001-7041-0150, Li, Hongwei Bran; https://orcid.org/0000-0002-5328-6407, de Dumast, Priscille; https://orcid.org/0000-0003-0359-9365, Licandro, Roxane, Ji, Hui, Siddiquee, Md Mahfuzur Rahman, Xu, Daguang, Myronenko, Andriy, Liu, Hao, Pei, Yuchen, Wang, Lisheng, Peng, Ying, Xie, Juanying, Zhang, Huiquan, Dong, Guiming, Fu, Hao, Wang, Guotai, Rieu, ZunHyan, Kim, Donghyeon, Kim, Hyun Gi, Karimi, Davood, Gholipour, Ali, Torres, Helena R, Oliveira, Bruno, Vilaça, João L, Lin, Yang, Avisdris, Netanell, Ben-Zvi, Ori, Bashat, Dafna Ben, Fidon, Lucas; https://orcid.org/0000-0003-1450-1634, Menze, Bjoern; https://orcid.org/0000-0003-4136-5690, Jakab, András; https://orcid.org/0000-0001-6291-9889, and et al

Abstract

In-utero fetal MRI is emerging as an important tool in the diagnosis and analysis of the developing human brain. Automatic segmentation of the developing fetal brain is a vital step in the quantitative analysis of prenatal neurodevelopment both in the research and clinical context. However, manual segmentation of cerebral structures is time-consuming and prone to error and inter-observer variability. Therefore, we organized the Fetal Tissue Annotation (FeTA) Challenge in 2021 in order to encourage the development of automatic segmentation algorithms on an international level. The challenge utilized FeTA Dataset, an open dataset of fetal brain MRI reconstructions segmented into seven different tissues (external cerebrospinal fluid, gray matter, white matter, ventricles, cerebellum, brainstem, deep gray matter). 20 international teams participated in this challenge, submitting a total of 21 algorithms for evaluation. In this paper, we provide a detailed analysis of the results from both a technical and clinical perspective. All participants relied on deep learning methods, mainly U-Nets, with some variability present in the network architecture, optimization, and image pre- and post-processing. The majority of teams used existing medical imaging deep learning frameworks. The main differences between the submissions were the fine tuning done during training, and the specific pre- and post-processing steps performed. The challenge results showed that almost all submissions performed similarly. Four of the top five teams used ensemble learning methods. However, one team's algorithm performed significantly superior to the other submissions, and consisted of an asymmetrical U-Net network architecture. This paper provides a first of its kind benchmark for future automatic multi-tissue segmentation algorithms for the developing human brain in utero.

Published
2023

45. Novel Hybrid Feature Selection Algorithms for Diagnosing Erythemato-Squamous Diseases

Author

Xie, Juanying, Lei, Jinhu, Xie, Weixin, Gao, Xinbo, Shi, Yong, Liu, Xiaohui, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Doug, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, He, Jing, editor, Liu, Xiaohui, editor, Krupinski, Elizabeth A., editor, and Xu, Guandong, editor

Published
2012
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