319 results on '"Xiaoyan, Pan"'
Search Results
2. Impact of SARS-CoV-2 envelope protein mutations on the pathogenicity of Omicron XBB
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Yi Wang, Xiaoyan Pan, Hongying Ji, Xiaoli Zuo, Geng-Fu Xiao, Jia Li, Lei-Ke Zhang, Bingqing Xia, and Zhaobing Gao
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Cytology ,QH573-671 - Published
- 2023
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3. Melatonin alleviates oxidative stress damage in mouse testes induced by bisphenol A
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Qi Qi, Jiaxin Yang, Shuang Li, Jingjing Liu, Da Xu, Guoqing Wang, Lei Feng, and Xiaoyan Pan
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melatonin ,bisphenol A ,oxidative stress ,testis ,testosterone ,Biology (General) ,QH301-705.5 - Abstract
We investigated the effect of melatonin on bisphenol A (BPA)-induced oxidative stress damage in testicular tissue and Leydig cells. Mice were gavaged with 50 mg/kg BPA for 30 days, and concurrently, were injected with melatonin (10 mg/kg and 20 mg/kg). Leydig cells were treated with 10 μmol/L of BPA and melatonin. The morphology and organ index of the testis and epididymis were observed and calculated. The sperm viability and density were determined. The expressions of melatonin receptor 1A and luteinizing hormone receptor, and the levels of malonaldehyde, antioxidant enzymes, glutathione, steroid hormone synthases, aromatase, luteinizing hormone, testosterone, and estradiol were measured. TUNEL assay was utilized to detect testicular cell apoptosis. The administration of melatonin at 20 mg/kg significantly improved the testicular index and epididymis index in mice treated with BPA. Additionally, melatonin promoted the development of seminiferous tubules in the testes. Furthermore, the treatment with 20 mg/kg melatonin significantly increased sperm viability and sperm density in mice, while also promoting the expressions of melatonin receptor 1A and luteinizing hormone receptor in Leydig cells of BPA-treated mice. Significantly, melatonin reduced the level of malonaldehyde in testicular tissue and increased the expression of antioxidant enzymes (superoxide dismutase 1, superoxide dismutase 2, and catalase) as well as the content of glutathione. Moreover, melatonin also reduced the number of apoptotic Leydig cells and spermatogonia, aromatase expression, and estradiol level, while increasing the expression of steroid hormone synthases (steroidogenic acute regulatory protein, cytochrome P450 family 17a1, cytochrome P450 17α-hydroxylase/20-lyase, and, 17β-hydroxysteroid dehydrogenase) and the level of testosterone. Melatonin exhibited significant potential in alleviating testicular oxidative stress damage caused by BPA. These beneficial effects may be attributed to melatonin’s ability to enhance the antioxidant capacity of testicular tissue, promote testosterone synthesis, and reduce testicular cell apoptosis.
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- 2024
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4. What can we learn from the Baduanjin rehabilitation as COVID‐19 treatment?: A narrative review
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Zhenggang Zhu, Xiaoyan Pan, Faping Zhong, Jun Tian, and Marilyn Li Yin Ong
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Baduanjin ,COVID‐19 ,exercise ,rehabilitation ,Nursing ,RT1-120 - Abstract
Abstract Aim To understand Baduanjin rehabilitation therapy in mild COVID‐19 patients. Design A narrative review. Methods A literature search for COVID‐19 and Baduanjin treatments was conducted on Chinese and English electronic databases: China National Knowledge Infrastructure, Wanfang Data, Embase, PubMed, Scopus, Science Direct, Ebscohost, SPORTDiscus and ProQuest. Results Twelve studies on the Baduanjin rehabilitation for COVID‐19 patients have been included. We acknowledged the considerable published research and current clinical practice using Baduanjin for COVID‐19 treatment in the following areas: anxiety, depression, insomnia, lung function rehabilitation, immunity and activity endurance. Conclusion The use of Baduanjin as adjuvant therapy for COVID‐19 patients' rehabilitation is still limited, therefore, more clinical studies are needed to confirm its efficacy.
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- 2023
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5. Two New and One First Recorded Species of Xylaria Isolated from Fallen Leaves in Hainan Tropical Rainforest National Park in China
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Xiaoyan Pan, Zongzhu Chen, Jinrui Lei, Xiaohua Chen, Tingtian Wu, Yuanling Li, and Yiqing Chen
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Xylariaceae ,Xylaria ,molecular phylogenetics ,taxonomy ,Ascomycota ,Biology (General) ,QH301-705.5 - Abstract
Xylaria is a widely distributed genus in the Ascomycota phylum that can decompose wood. It is an essential decomposer in ecosystems and a source of bioactive secondary metabolites. Based on morphological characteristics and molecular evidence, this article thoroughly describes two new species discovered on the fallen leaves in Hainan Tropical Rainforest National Park, along with illustrations and comparisons with similar species. Xylaria diaoluoshanensis is characterized by filamentous stromata with long infertile apexes, ascospores sometimes with non-cellular appendages. Xylaria fulvotomentosa differentiates itself from other Xylaria species that grow on fallen leaves by its stroma surface, being yellow tomentose. These two new species of the genus Xylaria were found by phylogenetic analysis using the ITS-β-tubulin-RPB2 sequence dataset. Furthermore, a species first discovered in China, X. petchii, is described. Finally, a search table for 44 species related to fallen leaves and petioles in the world is established.
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- 2024
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6. Melatonin Alleviates BPA-Induced Testicular Apoptosis and Endoplasmic Reticulum Stress
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Qi Qi, Lei Feng, Jingjing Liu, Da Xu, Guoqing Wang, and Xiaoyan Pan
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melatonin ,bisphenol a ,endoplasmic reticulum stress ,apoptosis ,testosterone ,Biochemistry ,QD415-436 ,Biology (General) ,QH301-705.5 - Abstract
Background: The impact of melatonin on bisphenol A (BPA)-induced testicular apoptosis and endoplasmic reticulum (ER) stress was explored. Methods: The mice received BPA (50 mg/kg) by gavage for 30 days while being injected with 20 mg/kg melatonin. Protein expressions were detected with western blotting. The Terminal Deoxynucleotidyl Transferase dUTP Nick End Labeling (TUNEL) assay measured testicular cell apoptosis. Testosterone was quantified by employing enzyme-linked immunosorbent assay (ELISA). Results: Melatonin promoted the development of seminiferous tubules, restored the orderly arrangement of the germ cells, and increased epithelial layers in the seminiferous tubules in BPA-treated mice. Moreover, in BPA-treated mouse testicular cells, melatonin markedly upregulated melatonin receptor 1A (MTNR1A) and melatonin Receptor 2 (MTNR2) expressions while downregulating ER molecular chaperones glucose-regulated protein 78 (GRP78) and glucose-regulated protein 94 (GRP94). Furthermore, it decreased p-PERK, p-IRE1, and ATF6α, as well as the apoptotic proteins cysteine-containing aspartate-specific proteases-12 (caspase-12) and cleaved cysteine-containing aspartate-specific proteases-3 (cleaved caspase-3), causing the suppression of testicular cell apoptosis. Additionally, melatonin increased the levels of cytochrome P450 17α-hydroxylase/20-lyase (CYP17A1), 17β-hydroxysteroid dehydrogenase 3 (17β-HSD3), and 3β-hydroxysteroid dehydrogenase 4 (3β-HSD4), in the ER, and elevated testosterone levels in testicular tissue. Conclusions: Melatonin can significantly alleviate testicular apoptosis and ER stress induced by BPA, which is because of the upregulation of melatonin receptor expression in testicular cells, inhibition of ER stress-related pathways, and enhancement of testosterone synthesis.
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- 2024
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7. Extracellular vesicles mediate antibody-resistant transmission of SARS-CoV-2
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Bingqing Xia, Xiaoyan Pan, Rong-Hua Luo, Xurui Shen, Shuangqu Li, Yi Wang, Xiaoli Zuo, Yan Wu, Yingqi Guo, Gengfu Xiao, Qiguang Li, Xin-Yan Long, Xiao-Yan He, Hong-Yi Zheng, Ying Lu, Wei Pang, Yong-Tang Zheng, Jia Li, Lei-Ke Zhang, and Zhaobing Gao
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Cytology ,QH573-671 - Abstract
Abstract Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a global pandemic. Antibody resistance dampens neutralizing antibody therapy and threatens current global Coronavirus (COVID-19) vaccine campaigns. In addition to the emergence of resistant SARS-CoV-2 variants, little is known about how SARS-CoV-2 evades antibodies. Here, we report a novel mechanism of extracellular vesicle (EV)-mediated cell-to-cell transmission of SARS-CoV-2, which facilitates SARS-CoV-2 to escape from neutralizing antibodies. These EVs, initially observed in SARS-CoV-2 envelope protein-expressing cells, are secreted by various SARS-CoV-2-infected cells, including Vero E6, Calu-3, and HPAEpiC cells, undergoing infection-induced pyroptosis. Various SARS-CoV-2-infected cells produce similar EVs characterized by extra-large sizes (1.6–9.5 μm in diameter, average diameter > 4.2 μm) much larger than previously reported virus-generated vesicles. Transmission electron microscopy analysis and plaque assay reveal that these SARS-CoV-2-induced EVs contain large amounts of live virus particles. In particular, the vesicle-cloaked SARS-CoV-2 virus is resistant to neutralizing antibodies and able to reinfect naïve cells independent of the reported receptors and cofactors. Consistently, the constructed 3D images show that intact EVs could be taken up by recipient cells directly, supporting vesicle-mediated cell-to-cell transmission of SARS-CoV-2. Our findings reveal a novel mechanism of receptor-independent SARS-CoV-2 infection via cell-to-cell transmission, provide new insights into antibody resistance of SARS-CoV-2 and suggest potential targets for future antiviral therapeutics.
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- 2023
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8. The use of MOOC in the innovation of Flipped Class Model teaching in the course of 'International Trade Practice'.
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Qi Liu 0078, Xiaoyan Pan, and Jian Liu
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- 2022
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9. Construction of Cost Control Model for E-commerce Enterprises Supply Chain Based on Big Data.
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Qi Liu 0078, Xiaoyan Pan, and Jian Liu
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- 2022
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10. Health problems faced by left-behind children in low/middle-income countries
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Xiaoyan Pan, Zhenggang Zhu, and Yanpei Wang
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Medicine (General) ,R5-920 ,Infectious and parasitic diseases ,RC109-216 - Published
- 2023
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11. Sound absorption performance of a triple-hole structure in green ceramsite concrete for high-speed-railway sound barriers: Experiments and neural network modeling
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Chunshen Wang, Xinyu Ren, Quanwei Diao, Xiaoyan Pan, Weiqing Su, Liang Chang, Bin Lin, and Shuai Yan
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Sound absorption ,Green ceramsite ,High-speed railway ,Triple-hole structure ,Noise control ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Green ceramsite concrete is an environmentally friendly sound-absorbing material for high-speed railway sound barriers. However, given its low sound absorption, this material is not widely used. Therefore, this study proposes a triple-hole structure to improve the sound absorption of green ceramsite concrete. The triple-hole structure comprised micro-sized holes in the ceramsite, medium-sized holes between the ceramsite, and surface macro-sized holes. The surface macro-sized holes were obtained by changing the mold shape, and the other holes were formed by formula control. The influence of the surface macro-sized holes on the acoustic performance of the triple-hole structure was analyzed using an impedance tube test. Results showed that the sound absorption coefficient increased when the hole diameter decreased or the surface porosity increased. The optimal surface macro-sized holes increased the average sound absorption coefficient by 83 %. The surface macro-sized holes improved the acoustic performance by absorbing the reflection of incident sound and not by resonance effect. This effect was attenuated when the relative surface area was increased by more than 100 %. Compared with the ANN method, the finite element simulation method cannot accurately reflect the acoustic effects of the triple hole structure. Back propagation neural network was used to predict the effect and can realize an accuracy of 95.5 %. Thus, this study proposes a reference for the design of sound-absorbing concrete based on frequency.
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- 2023
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12. Astaxanthin improves the development of the follicles and oocytes through alleviating oxidative stress induced by BPA in cultured follicles
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Yaqiu Li, Zhu Dong, Sitong Liu, Fan Gao, Jinyu Zhang, Zhendong Peng, Lixin Wang, and Xiaoyan Pan
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Medicine ,Science - Abstract
Abstract This study is to investigate whether astaxanthin could alleviate the oxidative stress damages of follicles induced by BPA and improve the development of the cultured follicles and oocytes. Compared with BPA group, the survival rate, antrum formation rate, oocyte maturation rate and adherence area of the D8 and D10 follicles of the BPA+Asta group were significantly higher. The estrogen and progesterone in the culture medium of BPA+Asta group were significantly higher. PCNA in D8 and D10 granulosa cells and ERα in D10 granulosa cells of follicles in BPA+Asta group were significantly higher. The levels of malondialdehyde in the follicle culture medium, levels of ROS in the oocytes, the expression levels of caspase 3 and cathepsin B in the oocytes of the BPA+Asta group were significantly lower. However, the mitochondrial membrane potential, and the expression levels of antioxidant genes (CAT, SOD1 and SOD2) and anti-apoptotic gene Bcl-2 in the oocytes in the BPA+Asta group were significantly higher. Astaxanthin improves the development of follicles and oocytes through increasing the antioxidant capacity of follicles and oocytes, and relieving the BPA-induced oxidative stress during follicular development and oocyte maturation.
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- 2022
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13. Integrating amino acids into Bcr-Abl inhibitors: design, synthesis, biological evaluation, and in silico studies.
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Yuying Liu, Zeyu Yang, Jie Zhang, Na Guo, Nanxin Liu, Qingqing Zhang, Xintao Dang, Yanchen Li, and Xiaoyan Pan
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- 2024
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14. CoVac501, a self-adjuvanting peptide vaccine conjugated with TLR7 agonists, against SARS-CoV-2 induces protective immunity
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Yiru Long, Jianhua Sun, Tian-Zhang Song, Tingting Liu, Feng Tang, Xinxin Zhang, Longfei Ding, Yunqiu Miao, Weiliang Zhu, Xiaoyan Pan, Qi An, Mian Qin, Xiankun Tong, Xionghua Peng, Pan Yu, Peng Zhu, Jianqing Xu, Xiaoyan Zhang, Yachun Zhang, Datao Liu, Ben Chen, Huilin Chen, Leike Zhang, Gengfu Xiao, Jianping Zuo, Wei Tang, Ji Zhou, Heng Li, Zhijian Xu, Hong-Yi Zheng, Xin-Yan Long, Qiuping Qin, Yong Gan, Jin Ren, Wei Huang, Yong-Tang Zheng, Guangyi Jin, and Likun Gong
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Cytology ,QH573-671 - Abstract
Abstract Safe, effective, and economical vaccines against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are needed to achieve adequate herd immunity and end the pandemic. We constructed a novel SARS-CoV-2 vaccine, CoVac501, which is a self-adjuvanting peptide vaccine conjugated with Toll-like receptor 7 (TLR7) agonists. The vaccine contains immunodominant peptides screened from the receptor-binding domain (RBD) and is fully chemically synthesized. It has been formulated in an optimized nanoemulsion formulation and is stable at 40 °C for 1 month. In non-human primates (NHPs), CoVac501 elicited high and persistent titers of protective neutralizing antibodies against multiple RBD mutations, SARS-CoV-2 original strain, and variants (B.1.1.7 and B.1.617.2). Specific peptides booster immunization against the B.1.351 variant has also been shown to be effective in improving protection against B.1.351. Meanwhile, CoVac501 elicited the increase of memory T cells, antigen-specific CD8+ T-cell responses, and Th1-biased CD4+ T-cell immune responses in NHPs. Notably, at an extremely high SARS-CoV-2 challenge dose of 1 × 107 TCID50, CoVac501 provided near-complete protection for the upper and lower respiratory tracts of cynomolgus macaques.
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- 2022
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15. Sevoflurane participates in the protection of rat renal ischemia‐reperfusion injury by down‐regulating the expression of TRPM7
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Xudong Xu, Rongrong Deng, Lu Zou, Xiaoyan Pan, Zhifeng Sheng, Da Xu, and Tingting Gan
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inflammatory factor ,oxidative stress ,renal ischemia‐reperfusion injury ,sevoflurane ,TRPM7 ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Introduction To investigate the protective effect of sevoflurane preconditioning on renal ischemia‐reperfusion injury (renalischemiareperfusionmodel, RIRI) and its related mechanism. Methods Eighty healthy adult male SD rats were randomly divided into control group (Sham group), model group (RIRI group), sevoflurane pretreatment group (Sev group) and TRPM7 inhibitor combined with sevoflurane pretreatment group (T + Sev group), 20 animals in each group. Hematoxylin‐eosin (HE) staining was used to observe the pathological changes of renal tissue, and the levels of creatinine and urea nitrogen in each group were detected. Deoxyribonucleic acid terminal transferase‐mediated dUTP nick end labeling (TUNEL) assay was used to detect renal cell apoptosis, and Western blottingwas used to detect the expression of apoptotic proteins cleaved‐caspase‐3, bax, Bcl‐2, and TRPM7 in renal tissue; Detection of oxidative stress‐related index levels in renal tissue and levels of inflammatory factors in renal tissue and serum. Results Compared with the Sham group, the renal tissue pathological damage was aggravated, the levels of creatinine and blood urea nitrogen were increased, and the apoptosis was increased in the RIR group and the Sev group. Death, malondialdehyde (MDA) levels and inflammatory factors were increased, and superoxide dismutase (SOD) levels were decreased (all p
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- 2023
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16. Identification of phytochemicals in Qingfei Paidu decoction for the treatment of coronavirus disease 2019 by targeting the virus-host interactome
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Yuyun Li, Yan Wu, Siyan Li, Yibin Li, Xin Zhang, Zeren Shou, Shuyin Gu, Chenliang Zhou, Daohua Xu, Kangni Zhao, Suiyi Tan, Jiayin Qiu, Xiaoyan Pan, and Lin Li
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COVID-19 ,Qingfei Paidu Decoction ,SARS-CoV-2 ,Bioinformatics ,Systematic pharmacology ,Virus-host interactome ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Qingfei Paidu decoction (QFPDD) has been clinically proven to be effective in the treatment of coronavirus disease 2019 (COVID-19). However, the bioactive components and therapeutic mechanisms remain unclear. This study aimed to explore the effective components and underlying mechanisms of QFPDD in the treatment of COVID-19 by targeting the virus-host interactome and verifying the antiviral activities of its active components in vitro. Key active components and targets were identified by analysing the topological features of a compound-target-pathway-disease regulatory network of QFPDD for the treatment of COVID-19. The antiviral activity of the active components was determined by a live virus infection assay, and possible mechanisms were analysed by pseudotyped virus infection and molecular docking assays. The inhibitory effects of the components tested on the virus-induced release of IL-6, IL-1β and CXCL-10 were detected by ELISA. Three components of QFPDD, oroxylin A, hesperetin and scutellarin, exhibited potent antiviral activities against live SARS-CoV-2 virus and HCoV-OC43 virus with IC50 values ranging from 18.68 to 63.27 μM. Oroxylin A inhibited the entry of SARS-CoV-2 pseudovirus into target cells and inhibited SARS-CoV-2 S protein-mediated cell-cell fusion by binding with the ACE2 receptor. The active components of QFPDD obviously inhibited the IL-6, IL-1β and CXCL-10 release induced by the SARS-CoV-2 S protein. This study supports the clinical application of QFPDD and provides an effective analysis method for the in-depth study of the mechanisms of traditional Chinese medicine (TCM) in the prevention and treatment of COVID-19.
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- 2022
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17. RBD-homodimer, a COVID-19 subunit vaccine candidate, elicits immunogenicity and protection in rodents and nonhuman primates
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Xiaoyan Pan, Jian Shi, Xue Hu, Yan Wu, Liang Zeng, Yanfeng Yao, Weijuan Shang, Kunpeng Liu, Ge Gao, Weiwei Guo, Yun Peng, Shaohong Chen, Xiaoxiao Gao, Cheng Peng, Juhong Rao, Jiaxuan Zhao, Cheng Gong, Hui Zhou, Yudong Lu, Zili Wang, Xiliang Hu, WenJuan Cong, Lijuan Fang, Yongxiang Yan, Jing Zhang, Hui Xiong, Jizu Yi, Zhiming Yuan, Pengfei Zhou, Chao Shan, and Gengfu Xiao
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Cytology ,QH573-671 - Abstract
Abstract The pandemic of COVID-19 caused by SARS-CoV-2 has raised a new challenges to the scientific and industrious fields after over 1-year spread across different countries. The ultimate approach to end the pandemic is the timely application of vaccines to achieve herd immunity. Here, a novel SARS-CoV-2 receptor-binding domain (RBD) homodimer was developed as a SARS-CoV-2 vaccine candidate. Formulated with aluminum adjuvant, RBD dimer elicited strong immune response in both rodents and non-human primates, and protected mice from SARS-CoV-2 challenge with significantly reducing viral load and alleviating pathological injury in the lung. In the non-human primates, the vaccine could prevent majority of the animals from SARS-CoV-2 infection in the respiratory tract and reduce lung damage. In addition, antibodies elicited by this vaccine candidate showed cross-neutralization activities to SARS-CoV-2 variants. Furthermore, with our expression system, we provided a high-yield RBD homodimer vaccine without additional biosafety or special transport device supports. Thus, it may serve as a safe, effective, and low-cost SARS-CoV-2 vaccine candidate.
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- 2021
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18. Identification of a Putative SARS-CoV-2 Main Protease Inhibitor through In Silico Screening of Self-Designed Molecular Library
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Nanxin Liu, Zeyu Yang, Yuying Liu, Xintao Dang, Qingqing Zhang, Jin Wang, Xueying Liu, Jie Zhang, and Xiaoyan Pan
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virtual screening ,COVID-19 ,SARS-CoV-2 main protease ,enzymatic assay ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
There have been outbreaks of SARS-CoV-2 around the world for over three years, and its variants continue to evolve. This has become a major global health threat. The main protease (Mpro, also called 3CLpro) plays a key role in viral replication and proliferation, making it an attractive drug target. Here, we have identified a novel potential inhibitor of Mpro, by applying the virtual screening of hundreds of nilotinib-structure-like compounds that we designed and synthesized. The screened compounds were assessed using SP docking, XP docking, MM-GBSA analysis, IFD docking, MD simulation, ADME/T prediction, and then an enzymatic assay in vitro. We finally identified the compound V291 as a potential SARS-CoV-2 Mpro inhibitor, with a high docking affinity and enzyme inhibitory activity. Moreover, the docking results indicate that His41 is a favorable amino acid for pi-pi interactions, while Glu166 can participate in salt-bridge formation with the protonated primary or secondary amines in the screened molecules. Thus, the compounds reported here are capable of engaging the key amino acids His41 and Glu166 in ligand-receptor interactions. A pharmacophore analysis further validates this assertion.
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- 2023
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19. Why is the SARS-CoV-2 Omicron variant milder?
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Bingqing Xia, Yi Wang, Xiaoyan Pan, Xi Cheng, Hongying Ji, Xiaoli Zuo, Hualiang Jiang, Jia Li, and Zhaobing Gao
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Science (General) ,Q1-390 - Published
- 2022
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20. Six Unprecedented Cytochalasin Derivatives from the Potato Endophytic Fungus Xylaria curta E10 and Their Cytotoxicity
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Xian Zhang, Yinzhong Fan, Ke Ye, Xiaoyan Pan, Xujun Ma, Honglian Ai, Baobao Shi, and Jikai Liu
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endophyte fungus ,Xylaria curta ,cytochalasins ,isolation and structure elucidation ,cytotoxicity ,Medicine ,Pharmacy and materia medica ,RS1-441 - Abstract
Six previously undescribed cytochalasins, Curtachalasins X1–X6 (1–6), together with six known compounds (7–12) were isolated from the endophytic fungus Xylaria curta E10 harbored in the plant Solanum tuberosum. The structures were elucidated by the interpretation of HRESIMS, UV, and NMR data. The absolute configurations of Curtachalasins X1–X6 were determined by comparison of their experimental and calculated electronic circular dichroism (ECD) spectra. In bioassays, Curtachalasin X1 (1) and X5 (5) showed cytotoxic activity against the MCF-7 cell line with IC50 values of 2.03 μM and 0.85 μM, respectively.
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- 2023
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21. A pathogen-like antigen-based vaccine confers immune protection against SARS-CoV-2 in non-human primates
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Chang Guo, Yanan Peng, Lin Lin, Xiaoyan Pan, Mengqi Fang, Yun Zhao, Keyan Bao, Runhan Li, Jianbao Han, Jiaorong Chen, Tian-Zhang Song, Xiao-Li Feng, Yahong Zhou, Gan Zhao, Leike Zhang, Yongtang Zheng, Ping Zhu, Haiying Hang, Linqi Zhang, Zhaolin Hua, Hongyu Deng, and Baidong Hou
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COVID-19 ,SARS-CoV-2 ,RBD ,vaccine ,B cells ,Toll-like receptor ,Medicine (General) ,R5-920 - Abstract
Summary: Activation of nucleic acid sensing Toll-like receptors (TLRs) in B cells is involved in antiviral responses by promoting B cell activation and germinal center responses. In order to take advantage of this natural pathway for vaccine development, synthetic pathogen-like antigens (PLAs) constructed of multivalent antigens with encapsulated TLR ligands can be used to activate B cell antigen receptors and TLRs in a synergistic manner. Here we report a PLA-based coronavirus disease 2019 (COVID-19) vaccine candidate designed by combining a phage-derived virus-like particle carrying bacterial RNA as TLR ligands with the receptor-binding domain of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) S protein as the target antigen. This PLA-based vaccine candidate induces robust neutralizing antibodies in both mice and non-human primates (NHPs). Using a NHP infection model, we demonstrate that the viral clearance is accelerated in vaccinated animals. In addition, the PLA-based vaccine induces a T helper 1 (Th1)-oriented response and a durable memory, supporting its potential for further clinical development.
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- 2021
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22. Scientometric Analysis on Rice Research under Drought, Waterlogging or Abrupt Drought-Flood Alternation Stress
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Xiaoyan Pan, Hui Wang, Zan Ouyang, Zifan Song, Hongjin Long, and Wang Luo
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rice ,bibliometric ,drought stress ,waterlogging stress ,citations ,Agriculture (General) ,S1-972 - Abstract
Many studies have shown that abiotic stresses could severely impact crop growth and yield, but a comprehensive review from a bibliometric perspective is lacking. This study explores how the research direction of rice under drought, waterlogging or both stresses has evolved over the past three decades, based on bibliometric analysis using Vosviewer 1.6.15 and HistCite Pro. Data were collected from the academic database of Web of Science. The results showed that 12 journals had a high number of publications and highly local citations. Meanwhile, the three journals of Field Crops Research, Journal of Experimental Botany and Plant Physiology could be the most influential leaders in this field. The author Arvind Kumar had the highest contribution to the output of articles, and Lizhong Xiong had a greater impact on the field. China, and Chinese institutions, were dominant in terms of the number of articles, but Japan, Germany, UK and institutions in USA and Japan had a higher quality of publications on average. Scholars are concerned with using transgenic methods for improving rice productivity with increasing abiotic stress tolerance; the research topics of rice cultivars, irrigation, water-use efficiency and soil fertility may be gradually shifting from a single theme to intertwining with the themes of genomics and abiotic/biotic resistance with climate change in the future.
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- 2022
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23. The Fate of IgE Epitopes and Coeliac Toxic Motifs during Simulated Gastrointestinal Digestion of Pizza Base
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Matthew E. Daly, Kai Wang, Xiaoyan Pan, Rosa L. Depau, Justin Marsh, Francesco Capozzi, Phil Johnson, Lee A. Gethings, and E. N. Clare Mills
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wheat ,gluten ,soy ,allergen ,coeliac toxic motif ,IgE epitope ,Chemical technology ,TP1-1185 - Abstract
Understanding how food processing may modify allergen bioaccessibility and the evolution of immunologically active peptides in the gastrointestinal tract is essential if knowledge-based approaches to reducing the allergenicity of food are to be realised. A soy-enriched wheat-based pizza base was subjected to in vitro oral–gastro–duodenal digestion and resulting digests analysed using a combination of sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and mass spectrometry (MS). The digestion profile of pizza base resembled that of bread crust where higher temperatures during baking reduced protein solubility but still resulted in the generation of a complex mixture of peptides. MS profiling showed numerous peptides carrying IgE epitopes, and coeliac toxic motifs were in excess of 20–30 residues long and were only released after either 120 min of gastric digestion or a combination of gastric and duodenal digestion. In silico prediction tools showed an overestimated number of cleavage sites identified experimentally, with low levels of atypical peptic and chymotryptic cleavage sites identified particularly at glutamine residues. These data suggest that such alternative pepsin cleavage sites may play a role in digestion of glutamine-rich cereal foods. They also contribute to efforts to provide benchmarks for mapping in vitro digestion products of novel proteins which form part of the allergenicity risk assessment.
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- 2022
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24. PARP1 Might Substitute HSF1 to Reactivate Latent HIV-1 by Binding to Heat Shock Element
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Xinfeng Xu, Yingtong Lin, Xiaoyun Zeng, Chan Yang, Siqin Duan, Liqiong Ding, Wanzhen Lu, Jian Lin, Xiaoyan Pan, Xiancai Ma, and Shuwen Liu
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HIV-1 latency ,latency reversing agents ,heat shock factor 1 ,heat shock element ,functional cure ,PARP1 ,Cytology ,QH573-671 - Abstract
At present, the barrier to HIV-1 functional cure is the persistence of HIV-1 reservoirs. The “shock (reversing latency) and kill (antiretroviral therapy)” strategy sheds light on reducing or eliminating the latent reservoir of HIV-1. However, the current limits of latency-reversing agents (LRAs) are their toxicity or side effects, which limit their practicability pharmacologically and immunologically. Our previous research found that HSF1 is a key transcriptional regulatory factor in the reversion of HIV-1 latency. We then constructed the in vitro HSF1-knockout (HSF1-KO) HIV-1 latency models and found that HSF1 depletion inhibited the reactivation ability of LRAs including salubrinal, carfizomib, bortezomib, PR-957 and resveratrol, respectively. Furthermore, bortezomib/carfizomib treatment induced the increase of heat shock elements (HSEs) activity after HSF1-KO, suggesting that HSEs participated in reversing the latent HIV-1. Subsequent investigation showed that latent HIV-1-reversal by H2O2-induced DNA damage was inhibited by PARP1 inhibitors, while PARP1 was unable to down-regulate HSF1-depleted HSE activity, indicating that PARP1 could serve as a replaceable protein for HSF1 in HIV-1 latent cells. In summary, we succeeded in finding the mechanisms by which HSF1 reactivates the latent HIV-1, which also provides a theoretical basis for the further development of LRAs that specifically target HSF1.
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- 2022
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25. Four New Pale-Spored Species of Xylaria (Xylariaceae, Xylariales) with a Key to Worldwide Species on Fallen Fruits and Seeds
- Author
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Haixia Ma, Zikun Song, Xiaoyan Pan, Zhi Qu, Zhanen Yang, Yu Li, and Anhong Zhu
- Subjects
Ascomycota ,Xylariaceae ,fructicolous fungi ,molecular phylogenetics ,taxonomy of new species ,Biology (General) ,QH301-705.5 - Abstract
Xylaria, a large and cosmopolitan genus of Ascomycota, plays an important ecological role in forest ecology as wood-decomposers, and serve as a source of bioactive secondary metabolites. The present work concerns a survey of Xylaria from Southwest China. Four new species of Xylaria with pale-colored ascospores associated with fallen fruits and seeds are described and illustrated based on morphological and phylogenetic evidences. The phylogeny inferred from a combined dataset of ITS-RPB2-β-tubulin sequences supports these four species as distinct species. The four new taxa, namely Xylariarogersii, X. schimicola, X. theaceicola, and X. wallichii, are compared and contrasted against morphologically similar species. A dichotomous identification key to all the accepted species of Xylaria associated with fallen fruits and seeds is given.
- Published
- 2022
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26. Eriocalyxin B inhibits inflammation induced by CCI-induced microglia activation to relieve neuropathic pain through inhibition of JAK2/STAT3 and NF-κB pathways
- Author
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Zhifeng Sheng and Xiaoyan Pan
- Subjects
Agronomy and Crop Science ,Food Science - Abstract
Neuropathic pain is a very troublesome disease that seriously affects human life. Eriocalyxin B (EriB) has been revealed to attenuate various diseases through its anti-inflammatory effects, but its regulatory effects on neuropathic pain remains unclear. The paw withdrawal threshold and paw withdrawal thermal latency were detected through mechanical allodynia and thermal hyperalgesia tests. The spinal injury was assessed through hematoxylin and eosin staining. The cell apoptosis was measured through terminal deoxynucleotide transferase-mediated dUTP nick end-labeling assay. The protein expressions were examined through Western blot analysis. The mRNA expression was examined through reverse transcription-quantitative polymerase chain reaction. The ionized calcium-binding adaptor molecule 1 level in the spinal cord was evaluated through immunofluorescence assay. The levels of tumor necrosis factor-α, interleukin (IL)-1β, and IL-6 were measured through enzyme-linked-immunosorbent serologic assay. The chronic constriction injury (CCI) rat model was constructed for the study. Our results demonstrated that EriB relieved CCI-stimulated neuropathic pain and nerve damage. In addition, the enhanced neural apoptosis mediated by CCI induction was reduced after EriB treatment. In addition, EriB inhibited CCI-induced microglia activity and inflammation. At last, the Janus kinase 2–signal transducer and activator of transcription 3 (JAK2/STAT3) and nuclear factor kappa B (NF-κB) pathways were activated in CCI rat model, which were attenuated following EriB treatment. Importantly, EriB (10 mg/kg) had a strong effect that was similar to the positive control (1-μg/kg dexmedetomidine), suggesting that EriB may be an effective drug for neuropathic pain. This study demonstrated that EriB inhibited inflammation caused by CCI-induced microglia activation to relieve neuropathic pain through inhibition of JAK2/STAT3 and NF-κB pathways. This study may highlight the regulatory functions of EriB in the treatment of neuropathic pain.
- Published
- 2023
27. Dorsolateral prefrontal activation in depressed young adults with and without suicidal ideation during an emotional autobiographical memory task: A fNIRS study
- Author
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Minxiao Zheng, Hui Da, Xiaoyan Pan, Yueran Bian, Xiaoqin Li, Qiang Xiao, Min Qiu, Nian Xiang, Dongmei Zhu, Qiang Wei, and Yan Zhang
- Subjects
Psychiatry and Mental health ,Clinical Psychology - Published
- 2023
28. MicroRNAs Expression Patterns Predict Tumor Mutational Burden in Colorectal Cancer
- Author
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Jiahao Huang, Haizhou Liu, Yang Zhao, Tao Luo, Jungang Liu, Junjie Liu, Xiaoyan Pan, and Weizhong Tang
- Subjects
tumor mutational burden ,microRNA ,colorectal cancer ,immunotherapy ,microsatellite instability ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundTumor mutational burden (TMB) could be a measure of response to immune checkpoint inhibitors therapy for patients with colorectal cancer (CRC). MicroRNAs (miRNAs) participate in anticancer immune responses. In the present study, we determined miRNA expression patterns in patients with CRC and built a signature that predicts TMB.MethodsNext generation sequencing (NGS) on formalin-fixed paraffin-embedded samples from CRC patients was performed to measure TMB levels. We used datasets from The Cancer Genome Atlas to compare miRNA expression patterns in samples with high and low TMB from patients with CRC. We created an miRNA-based signature index using the selection operator (LASSO) and least absolute shrinkage method from the training set. We used an independent test set as internal validation. We used real-time polymerase chain reaction (RT-PCR) to validate the miRNA-based signature classifier.ResultsTwenty-seven samples from CRC patients underwent NGS to determine the TMB level. We identified four miRNA candidates in the training set for predicting TMB (N = 311). We used the test set (N = 204) for internal validation. The four-miRNA-based signature classifier was an accurate predictor of TMB, with accuracy 0.963 in the training set. In the test set, it was 0.902; and it was 0.946 in the total set. The classifier was superior to microsatellite instability (MSI) for predicting TMB in TCGA dataset. In the validation cohort, MSI status more positively correlated with TMB levels than did the classifier. Validation from RT-qPCR showed good target discrimination of the classifier for TMB prediction.ConclusionTo our knowledge, this is the first miRNA-based signature classifier validated using high quality clinical data to accurately predict TMB level in patients with CRC.
- Published
- 2021
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29. What can we learn from the Baduanjin rehabilitation as <scp>COVID</scp> ‐19 treatment?: A narrative review
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Zhenggang Zhu, Xiaoyan Pan, Faping Zhong, Jun Tian, and Marilyn Li Yin Ong
- Subjects
General Nursing - Abstract
To understand Baduanjin rehabilitation therapy in mild COVID-19 patients.A narrative review.A literature search for COVID-19 and Baduanjin treatments was conducted on Chinese and English electronic databases: China National Knowledge Infrastructure, Wanfang Data, Embase, PubMed, Scopus, Science Direct, Ebscohost, SPORTDiscus and ProQuest.Twelve studies on the Baduanjin rehabilitation for COVID-19 patients have been included. We acknowledged the considerable published research and current clinical practice using Baduanjin for COVID-19 treatment in the following areas: anxiety, depression, insomnia, lung function rehabilitation, immunity and activity endurance.The use of Baduanjin as adjuvant therapy for COVID-19 patients' rehabilitation is still limited, therefore, more clinical studies are needed to confirm its efficacy.
- Published
- 2022
30. Robust Segmentation Based on Salient Region Detection Coupled Gaussian Mixture Model
- Author
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Xiaoyan Pan, Yuhui Zheng, and Byeungwoo Jeon
- Subjects
image segmentation ,salient region detection ,Gaussian mixture model ,EM algorithm ,Information technology ,T58.5-58.64 - Abstract
The impressive progress on image segmentation has been witnessed recently. In this paper, an improved model introducing frequency-tuned salient region detection into Gaussian mixture model (GMM) is proposed, which is named FTGMM. Frequency-tuned salient region detection is added to achieve the saliency map of the original image, which is combined with the original image, and the value of the saliency map is added into the Gaussian mixture model in the form of spatial information weight. The proposed method (FTGMM) calculates the model parameters by the expectation maximization (EM) algorithm with low computational complexity. In the qualitative and quantitative analysis of the experiment, the subjective visual effect and the value of the evaluation index are found to be better than other methods. Therefore, the proposed method (FTGMM) is proven to have high precision and better robustness.
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- 2022
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31. Two New Species of Diatrype (Xylariales, Ascomycota) with Polysporous Asci from China
- Author
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Zhanen Yang, Bo Zhang, Zhi Qu, Zikun Song, Xiaoyan Pan, Changlin Zhao, and Haixia Ma
- Subjects
Diatrypaceae ,taxonomy ,morphology ,phylogenetic analyses ,Biology (General) ,QH301-705.5 - Abstract
Two new species of Diatrype collected in northeast China are described and illustrated based on morphological and molecular evidence. Diatrype larissae from Heilongjiang Province is characterised by having 3–6 perithecia in a stroma, asci polysporous, ascospores allantoid, aseptate, slightly or moderately curved, subhyaline. Diatrype betulaceicola from Inner Mongolia has large stroma with 5–14 perithecia, perithecium immersed, asci polysporous, long-stalked, ascospores allantoid, aseptate, slightly curved, subhyaline. The phylogenies inferred from the data set of nrDNA ITS1-5.8S-ITS2 (ITS) and beta-tubulin (β-tubulin) supported the two new species both as members in the genus Diatrype and distinct species. The morphological similarities and dissimilarities of the new species with phylogenetically close relatives are discussed. A dichotomous identification key to the Diatrype spp. known from China is proposed.
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- 2022
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32. Multi-Gene Phylogeny and Taxonomy of Hypoxylon (Hypoxylaceae, Ascomycota) from China
- Author
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Haixia Ma, Zikun Song, Xiaoyan Pan, Yu Li, Zhanen Yang, and Zhi Qu
- Subjects
Ascomycota ,molecular phylogenetics ,wood-decomposing fungi ,tropical rainforest ,taxonomy ,Hypoxylon ,Biology (General) ,QH301-705.5 - Abstract
The Hypoxylon species play an important ecological role in tropical rainforest as wood-decomposers, and some might have benefical effects on their hosts as endophytes. The present work concerns a survey of the genus Hypoxylon from Hainan Tropical Rainforest National Park of China. Four new species: H. wuzhishanense, H. hainanense, H.chrysalidosporum, and H.cyclobalanopsidis, were discovered based on a combination of morphological characteristics and molecular data. Hypoxylon wuzhishanense is characterized by Rust pulvinate stromata, amyloid apical apparatus and brown ascospores, with most of the perispore being indehiscent in 10% KOH. Hypoxylon hainanense has effused–pulvinate and Violet stromata, amyloid apical apparatus, light-brown to brown ascospores with straight germ slit and dehiscent perispore. Hypoxylonchrysalidosporum is distinguished by glomerate to pulvinate stromata, highly reduced or absent inamyloid apical apparatus, and light-brown to brown ascospores with very conspicuous coil-like ornamentation. Hypoxyloncyclobalanopsidis has Livid Purple pulvinate stromata, highly reduced amyloid apical apparatus, faint bluing, brown ascospores and dehiscent perispore, and it grows on dead branches of Cyclobalanopsis. Detailed descriptions, illustrations, and contrasts with morphologically similar species are provided. Phylogenetic analyses inferred from ITS, RPB2, LSU, and β-tubulin sequences confirmed that the four new species are distinct within the genus Hypoxylon.
- Published
- 2022
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33. Association between skeletal muscle mass to visceral fat area ratio and arterial stiffness in Chinese patients with type 2 diabetes mellitus
- Author
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Jing Xu, Xiaoyan Pan, Haili Liang, Yi Lin, Yilian Hong, Qiya Si, Feixia Shen, and Xuejiang Gu
- Subjects
Skeletal muscle mass ,Visceral fat area ,Skeletal muscle mass to visceral fat area ratio ,Arterial stiffness ,Type 2 diabetes mellitus ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background The skeletal muscle mass-to-visceral fat area ratio (SVR) has been linked to arterial stiffness in non-diabetic adults. We examined the association between the SVR and arterial stiffness in patients with type 2 diabetes mellitus (T2DM). Methods Patients with type 2 diabetes mellitus (252 men and 171 women) aged 40–75 years were enrolled and divided into three groups according to SVR tertiles. Arterial stiffness was measured as brachial-ankle pulse wave velocity (baPWV), with baPWV> 1800 mm/s defined as high. Spearman’s partial correlation was used to adjust confounding factors. The odds ratio for high baPWV was determined by multiple logistic regression analyses, and receiver-operating characteristic analysis was conducted. Results SVR was associated with baPWV in Chinese patients with T2DM (Spearman’s partial correlation = − 0.129, P
- Published
- 2018
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34. New insight into the application of fluorescence platforms in tumor diagnosis: From chemical basis to clinical application
- Author
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Yanchen Li, Qinhua Chen, Xiaoyan Pan, Wen Lu, and Jie Zhang
- Subjects
Pharmacology ,Drug Discovery ,Molecular Medicine - Abstract
Early and rapid diagnosis of tumors is essential for clinical treatment or management. In contrast to conventional means, bioimaging has the potential to accurately locate and diagnose tumors at an early stage. Fluorescent probe has been developed as an ideal tool to visualize tumor sites and to detect biological molecules which provides a requirement for noninvasive, real-time, precise, and specific visualization of structures and complex biochemical processes in vivo. Rencently, the development of synthetic organic chemistry and new materials have facilitated the development of near-infrared small molecular sensing platforms and nanoimaging platforms. This provides a competitive tool for various fields of bioimaging such as biological structure and function imaging, disease diagnosis, in situ at the in vivo level, and real-time dynamic imaging. This review systematically focused on the recent progress of small molecular near-infrared fluorescent probes and nano-fluorescent probes as new biomedical imaging tools in the past 3-5 years, and it covers the application of tumor biomarker sensing, tumor microenvironment imaging, and tumor vascular imaging, intraoperative guidance and as an integrated platform for diagnosis, aiming to provide guidance for researchers to design and develop future biomedical diagnostic tools.
- Published
- 2022
35. <scp>TREM</scp> ‐1 induces pyroptosis in cardiomyocytes by activating <scp>NLRP3</scp> inflammasome through the <scp>SMC4</scp> / <scp>NEMO</scp> pathway
- Author
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Zilong Yang, Xiaoyan Pan, Xiaoxia Wu, Qiuyun Lin, Yongxia Chen, Shuting Cai, Yuanli Zhang, Zhenhua Mai, Niall Ahmad, Daqing Ma, and Liehua Deng
- Subjects
Cell Biology ,Molecular Biology ,Biochemistry - Abstract
Sepsis often causes cell death via pyroptosis and hence results in septic cardiomyopathy. Triggering receptors expressed in myeloid cells-1 (TREM-1) may initiate cellular cascade pathways and, in turn, induce cell death and vital organ dysfunction in sepsis, but the evidence is limited. We set to investigate the role of TREM-1 on nucleotide-binding oligomerization domain-like receptors with pyrin domain-3 (NLRP3) inflammasome activation and cardiomyocyte pyroptosis in sepsis models using cardiac cell line (HL-1) and mice. In this study, TREM-1 was found to be significantly increased in HL-1 cells challenged with lipopolysaccharide (LPS). Pyroptosis was also significantly increased in the HL-1 cells challenged with lipopolysaccharide and an NLRP3 inflammasome activator, nigericin. The close interaction between TREM-1 and structural maintenance of chromosome 4 (SMC4) was also identified. Furthermore, inhibition of TREM-1 or SMC4 prevented the upregulation of NLRP3 and decreased Gasdermin-D, IL-1β and caspase-1 cleavage. In mice subjected to caecal ligation and puncture, the TREM-1 inhibitor LR12 decreased the expression of NLRP3 and attenuated cardiomyocyte pyroptosis, leading to improved cardiac function and prolonged survival of septic mice. Our work demonstrates that, under septic conditions, TREM-1 plays a critical role in cardiomyocyte pyroptosis. Targeting TREM-1 and its associated molecules may therefore lead to novel therapeutic treatments for septic cardiomyopathy.
- Published
- 2022
36. PAK5 is a potential target in myelodysplastic syndrome through interacting with LMO2 and GATA1
- Author
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null Xiaoyan Pan, null Dawei Liu, null Minchao Ying, null Gaoming Zheng, null Chaoming Fan, null Feng Pan, and null Qiang Ke
- Subjects
General Medicine - Published
- 2022
37. Chelerythrine Attenuates Renal Ischemia/Reperfusion-induced Myocardial Injury by Activating CSE/H2S via PKC/NF-κB Pathway in Diabetic Rats
- Author
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Bo Hu, Guangtao Xu, Yongxia Zheng, Fei Tong, Ping Qian, Xiaoyan Pan, Xinmei Zhou, and Ruilin Shen
- Subjects
Chelerythrine ,Ischemia/reperfusion ,Diabetes mellitus ,Cystathionine-γ-lyase ,Hydrogen disulfide ,Protein kinase C ,Nuclear factor-κ B ,Dermatology ,RL1-803 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Background/Aims: Chelerythrine (CHE), a benzophenanthridine alkaloid, is a potent, selective, and cell-permeable protein kinase C (PKC) inhibitor. The purpose of the present study was to evaluate the effect of CHE on myocardial recovery after renal ischemia/reperfusion (I/R)-induced myocardial injury (RI/RMI) in a streptozocin (STZ)-induced diabetic rat model. Methods: Diabetes mellitus (DM) rats preconditioned with CHE and D, L-propargylglycine (PAG) were subjected to renal I/R. The extent of cardiac morphologic lesions and the biochemical markers of cardiorenal function and oxidative stress were detected utilizing hematoxylin-eosin staining, commercial kits, and enzyme-linked immunoassay, respectively. The expressions of cystathionine-γ-lyase (CSE), PKC-α, PKC-β2, and nuclear factor-kappa B (NF-κB) in the rat myocardial tissue were measured utilizing western blotting. Results: Renal I/R treatment resulted in myocardial injury. CHE-preconditioning promoted the recovery from myocardial damage by ameliorating the biochemical parameters of myocardial injury, reducing oxidative stress, increasing the H2S level, up-regulating the expression of CSE, and down-regulating the expressions of PKC-α, PKC-β2, and NF-κB. Conclusion: These findings suggest that CHE-pretreatment may exert a protective effect on the myocardium against RI/RMI by activating endogenous CSE/H2S via PKC/NF-κB pathway in STZ-induced diabetic rats. Further studies are needed defining underlying mechanisms.
- Published
- 2017
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38. Identification of potential targets against SARS‐CoV‐2 of antiviral drugs based on photoaffinity probes
- Author
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Yuexiang Ma, Jin Wang, Xiaoyan Pan, Jie Zhang, and Yuanyuan Shan
- Subjects
Drug Discovery - Published
- 2023
39. A Potential Molecular Inhibitor of the SARS-COV-2 Main Protease Obtained by Virtual Screening
- Author
-
Nanxin Liu, Zeyu Yang, Yuying Liu, Xintao Dang, Qingqing Zhang, Jin Wang, Xueying Liu, Jie Zhang, and Xiaoyan Pan
- Abstract
SARS-CoV-2 has been out breaking around the world for more than three years and continues to evolve variants, which has become a major global health threat. Main protease (Mpro, also called 3CLpro) plays a key role in viral replication and proliferation, making it an attractive drug target. Here, we have identified novel potential inhibitor of Mpro by applying a virtual screening of hundreds Nilotinib structure-like compounds we designed and synthesized. The screened compounds were followed for the SP docking, XP docking, MM-GBSA analysis, IFD docking, MD simulation, ADME/T prediction and then enzymatic assay in vitro. We finally identified compound V291 as a potential SARS-COV-2 Mpro inhibitor with high docking affinity and enzyme inhibitory activity. Moreover, the docking results indicate that His41 is a favorable amino acid for pi-pi inter-actions, while Glu166 can participate in salt bridge formation with protonated primary or secondary amines in the screened molecules. Thus, compounds reported here are capable of engaging the key amino acids His41 and Glu166 in ligand-receptor interactions. Pharmacophore analysis further validates this assertion.
- Published
- 2023
40. Bibliometric Analysis of Soil Nutrient Research between 1992 and 2020
- Author
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Xiaoyan Pan, Jialong Lv, Miles Dyck, and Hailong He
- Subjects
soil nutrient ,bibliometric ,visualization ,citations ,publication outputs ,Agriculture (General) ,S1-972 - Abstract
Soil nutrient balance is related to the interaction mechanism between soil fertilizer, soil water, climate change, and plant capability. This paper provides a perspective from bibliometric analysis based on data from the Web of Science core collection with software tools, including Vosviewer, HistCite Pro, and Citespace, in order to reveal the evolution of research trends in soil nutrients. The results show that publication outputs have increased exponentially from 1992 to 2020. The synthetic parameter of the sum of normalized data (SND), calculated from the default indicators of the bibliometric software tools, was used to rank the overall contribution of journal/authors/institutions/countries. The results demonstrate that Agriculture Ecosystems & Environment, Soil Biology & Biochemistry and Science of the Total Environment are the leading journals in the soil nutrient field. The Chinese Academy of Sciences had the highest total citations and collaborated most closely with other organizations, followed by United States Department of Agriculture (USDA) Agricultural Research Service (ARS) and Agr& Agri Food Canada. In addition, USA, China, and UK are the top three research centers for this topic. Moreover, Ken E Giller, Qirong Shen, and Rattan Lal were the top three authors, while Andrew Sharpley ranked the first depending on citations per publication. In terms of co-occurrence of keyword analysis, the results indicate that nitrogen fertilizer, green manure, and soil population have gained close attention from scholars, while soil amendment of biochar have evolved as a hot topic in recent years. Perspectives on future studies are also given.
- Published
- 2021
- Full Text
- View/download PDF
41. Novel Compound, ND-17, Regulates the JAK/STAT, PI3K/AKT, and MAPK Pathways and Restrains Human T-lymphoid Leukemia Development
- Author
-
Weina, Ma, Yanhong, Liu, Panpan, Lei, Man, Zhu, and Xiaoyan, Pan
- Subjects
STAT3 Transcription Factor ,Pharmacology ,Phosphatidylinositol 3-Kinases ,Cancer Research ,Oncology ,Drug Discovery ,Humans ,Apoptosis ,Janus Kinase 2 ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,Proto-Oncogene Proteins c-akt ,Signal Transduction - Abstract
Background: T cell acute lymphoblastic leukemia (T-ALL) is an invasive hematological malignant disorder of T cell progenitors. The Janus kinase-signal transducer and activator of transcription (JAK-STAT) signaling pathway plays an important role in the development of T-ALL and in the inhibition of the key molecule, JAK2, and could suppress T-ALL cell proliferation. Objective: The objective of this study was to investigate the in vitro anti-tumor effects of a novel nilotinib derivative, ND-17, on cancer cell lines via its interactions with JAK2. Methods: The effects of ND-17 on cell proliferation and on cell cycle and apoptosis were evaluated using the tetrazolium assay and flow cytometry, respectively. In addition, the ND-17/JAK2 binding interactions were evaluated using surface plasmon resonance and western blot analyses. Results: ND-17 exerted the greatest inhibitory effects on T-ALL cells amongst all hematological cancer cell lines tested. Flow cytometric analysis indicated that ND-17 blocked the cell cycle at the S phase in T-ALL cells. Nilotinib did not significantly inhibit T-ALL cell growth or regulate the cell cycle. Preliminary investigations revealed that the regulation of cyclin-dependent kinases/cyclins was attributed to ND-17-induced cell cycle arrest. Furthermore, ND-17 could bind to JAK2 with strong affinity, and more importantly, ND-17 bound to the ATP pocket of JAK2 in a manner similar to the potent inhibitor. Thus, ND-17 treatment exhibited a prominent effect in inhibiting the phosphorylation of JAK2 in T-ALL cells. An increase in the phosphorylation of JAK2 was observed in interleukin-6- stimulated Jurkat cells, which was reversed by ND-17 treatment. Meanwhile, the combination of TG- 101348 and ND-17 led to further improvement in inhibiting the phosphorylation of JAK2. Moreover, the transfection and knockdown of JAK2 altered the inhibitory effect of ND-17 on Jurkat cell viability. In addition, ND-17 treatment suppressed the JAK/STAT, phosphatidylinositol-3-kinase/protein kinase B/mechanistic target of rapamycin, and mitogen-activated protein kinase/extracellular signal-regulated protein kinases 1 and 2 signaling pathways. Conclusion: These findings suggest that ND-17 could be a promising JAK2 inhibitor for the treatment of T-ALL.
- Published
- 2022
42. Discovery of intracellular self-assembly protein degraders driven by tumor-specific activatable bioorthogonal reaction
- Author
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Ru Si, Ping Hai, Yongbiao Zheng, Jin Wang, Qingqing Zhang, Yanchen Li, Xiaoyan Pan, and Jie Zhang
- Subjects
Pharmacology ,Organic Chemistry ,Drug Discovery ,General Medicine - Published
- 2023
43. New Wenshen Shengjing Decoction Improves Early Embryonic Development by Maintaining Low Levels of H3K4me3 in Sperm
- Author
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Wansheng Zhang, Lei Lu, Yanmei Sun, Zhu Dong, Xinyu Lei, Zhendong Peng, Baoyu Zhang, Shiwen Cao, Xuenan Wang, and Xiaoyan Pan
- Subjects
Male ,Article Subject ,General Immunology and Microbiology ,Plant Extracts ,Embryonic Development ,General Medicine ,Embryo, Mammalian ,Spermatozoa ,General Biochemistry, Genetics and Molecular Biology ,Histones ,Mice ,Blastocyst ,embryonic structures ,Animals ,Female ,Drugs, Chinese Herbal - Abstract
Background. New Wenshen Shengjing Decoction (NWSSJD), a traditional Chinese compound medicine, has significant effect on spermatogenesis disorder and can significantly improve sperm quality. Many components in NWSSJD can induce epigenetic modifications of different types of cells. It is not yet known whether they can cause epigenetic modifications in sperm or early embryos. Objective. This study investigated the effect of NWSSJD on mouse early embryonic development and its regulation of H3K4me3 in mouse sperm and early embryos. Methods. Spermatogenesis disorder was induced in male mice with CPA (cyclophosphamide). NWSSJD was administrated for 30 days. Then, the male mice were mated with the female mice with superovulation, and the embryo degeneration rate of each stage was calculated. Immunofluorescence staining was used to detect the expression of H3K4me3 in sperm and embryos at various stages. Western blotting was performed to detect methyltransferase SETD1B expression. The expressions of development-related genes (OCT-4, NANOG, and CDX2) and apoptosis-related genes (BCL-2 and p53) were measured with qRT-PCR. Results. Compared with the CPA group, NWSSJD significantly reduced the H3K4me3 level in sperms, significantly increased the number of normal early embryos (2-cell embryos, 3-4-cell embryos, 8-16-cell embryos, and blastocysts) per mouse, and reduced the degeneration rate of the embryos. The expression levels of H3K4me3 and methyltransferase SETD1B in early embryos were significantly elevated by NWSSJD. Additionally, NWSSJD significantly promoted BCL-2 expression, while reducing p53 expression, thus inhibiting embryonic cell apoptosis. Moreover, the expressions of development-related genes OCT-4 and CDX2 were significantly increased by NWSSJD, but NANOG expression had no significant difference. Conclusion. NWSSJD may promote early embryonic development possibly by maintaining low H3K4me3 levels in sperms and normal H3K4me3 modification in early embryos and by inhibiting embryonic cell apoptosis.
- Published
- 2022
44. The Recent Advance of Cell-Penetrating and Tumor-Targeting Peptides as Drug Delivery Systems Based on Tumor Microenvironment
- Author
-
Qingqing Zhang, Nanxin Liu, Jin Wang, Yuying Liu, Kai Wang, Jie Zhang, and Xiaoyan Pan
- Subjects
Drug Discovery ,Pharmaceutical Science ,Molecular Medicine - Abstract
Cancer has become the primary reason for industrial countries death. Although first-line treatments have achieved remarkable results in inhibiting tumors, they could have serious side effects because of insufficient selectivity. Therefore, specific localization of tumor cells is currently the main desire for cancer treatment. In recent years, cell-penetrating peptides (CPPs), as a kind of promising delivery vehicle, have attracted much attention because they mediate the high-efficiency import of large quantities of cargos
- Published
- 2023
45. Plasma sTREM-1 May Be an Early Diagnosis and Prognosis Marker of Septic Cardiomyopathy
- Author
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Jiamin YU, Yongxia Chen, Xiaoyan Pan, Ji Chen, Zhenhua Mai, Yuanli Zhang, Xiaoyan Wang, Sayed Adam Bukhari, Daqing Ma, and Liehua Deng
- Published
- 2023
46. Research on the Appreciation of Shakespeare’s Sonnet 44 and 45
- Author
-
Xiaoyan Pan
- Published
- 2023
47. Sevoflurane participates in the protection of rat renal ischemia‐reperfusion injury by down‐regulating the expression of TRPM7
- Author
-
Xudong Xu, Rongrong Deng, Lu Zou, Xiaoyan Pan, Zhifeng Sheng, Da Xu, and Tingting Gan
- Subjects
Immunology ,Immunology and Allergy - Published
- 2022
48. Sertraline Is an Effective SARS-CoV-2 Entry Inhibitor Targeting the Spike Protein
- Author
-
Yuliu Chen, Yan Wu, Shaoying Chen, Qingping Zhan, Dingzhou Wu, Chan Yang, Xiaoxue He, Mengjie Qiu, Nannan Zhang, Zhaofeng Li, Yunhua Guo, Minjun Wen, Lu Lu, Cuiqing Ma, Jiayin Guo, Wei Xu, Xiaojuan Li, Lin Li, Shibo Jiang, Xiaoyan Pan, Shuwen Liu, and Suiyi Tan
- Subjects
Mice ,SARS-CoV-2 ,Sertraline ,Virology ,Insect Science ,Spike Glycoprotein, Coronavirus ,Immunology ,Animals ,Humans ,COVID-19 ,Virus Internalization ,Antiviral Agents ,Microbiology - Abstract
The global spread of the novel coronavirus severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the continuously emerging new variants underscore an urgent need for effective therapeutics for the treatment of coronavirus disease 2019 (COVID-19). Here, we screened several FDA-approved amphiphilic drugs and determined that sertraline (SRT) exhibits potent antiviral activity against infection of SARS-CoV-2 pseudovirus (PsV) and authentic virus
- Published
- 2022
49. Accuracy analysis of remote sensing index enhancement for SVM salt inversion model
- Author
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Ying Chen, Xiaoyan Pan, Mingxin Men, Xin Fu, Cui Jianghui, Peng Zhengping, and Wang Yang
- Subjects
Soil salinity ,010504 meteorology & atmospheric sciences ,Salt content ,Geography, Planning and Development ,0211 other engineering and technologies ,Inversion (meteorology) ,02 engineering and technology ,complex mixtures ,01 natural sciences ,Support vector machine ,Rapid acquisition ,Environmental science ,Vegetation Index ,021101 geological & geomatics engineering ,0105 earth and related environmental sciences ,Water Science and Technology ,Remote sensing - Abstract
The accurate and rapid acquisition of the soil salt content and spatial distribution is of great significance for effectively monitoring cropland soil salinization. Using OLI/Landsat-8 images as da...
- Published
- 2021
50. Low-Numerical Aperture Microscope Objective Boosted by Liquid-Immersed Dielectric Microspheres for Quantum Dot-Based Digital Immunoassays
- Author
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Jiajia Li, Hongwei Gai, Xiaoyan Pan, Xiaojun Liu, and Qingquan Zhang
- Subjects
Immunoassay ,Male ,Serum ,Detection limit ,medicine.diagnostic_test ,business.industry ,Dynamic range ,Chemistry ,Dielectric ,Prostate-Specific Antigen ,Microspheres ,Analytical Chemistry ,Numerical aperture ,Quantum dot ,Quantum Dots ,Microscopy ,medicine ,Miniaturization ,Humans ,Optoelectronics ,business - Abstract
Quantum dot (QD)-based digital immunoassays play an important role in ultrasensitive biomarker detection. However, the requirement of an objective with a high numerical aperture (NA) limits the application of this immunoassay. Here, high-quality imaging of massive single-QDs was achieved by the combination of an air objective (20×/0.4 NA) and liquid-immersed microspheres (150 μm, n = 2.2). The signal-to-noise ratio was comparable to that of a 100×/1.4 NA oil objective. Digital analysis of prostate-specific antigen (PSA) was performed within the dynamic range of 0-50 ng/mL and a limit of detection of 0.17 ng/mL. The measured serum data from the PSA were close to the values provided by a hospital. Using a low-magnification and low-NA objective may reduce the barrier of microscopy miniaturization and is beneficial to popularize biomolecular digital analysis.
- Published
- 2021
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