Search

The most common causes of chronic liver disease are excess alcohol intake, viral hepatitis and non-alcoholic fatty liver disease, with the clinical spectrum ranging in severity from hepatic inflammation to cirrhosis, liver failure or hepatocellular carcinoma (HCC). The genome of HCC exhibits diverse mutational signatures, resulting in recurrent mutations across more than 30 cancer genes.sup.1-7. Stem cells from normal livers have a low mutational burden and limited diversity of signatures.sup.8, which suggests that the complexity of HCC arises during the progression to chronic liver disease and subsequent malignant transformation. Here, by sequencing whole genomes of 482 microdissections of 100-500 hepatocytes from 5 normal and 9 cirrhotic livers, we show that cirrhotic liver has a higher mutational burden than normal liver. Although rare in normal hepatocytes, structural variants, including chromothripsis, were prominent in cirrhosis. Driver mutations, such as point mutations and structural variants, affected 1-5% of clones. Clonal expansions of millimetres in diameter occurred in cirrhosis, with clones sequestered by the bands of fibrosis that surround regenerative nodules. Some mutational signatures were universal and equally active in both non-malignant hepatocytes and HCCs; some were substantially more active in HCCs than chronic liver disease; and others--arising from exogenous exposures--were present in a subset of patients. The activity of exogenous signatures between adjacent cirrhotic nodules varied by up to tenfold within each patient, as a result of clone-specific and microenvironmental forces. Synchronous HCCs exhibited the same mutational signatures as background cirrhotic liver, but with higher burden. Somatic mutations chronicle the exposures, toxicity, regeneration and clonal structure of liver tissue as it progresses from health to disease. Whole-genome sequencing of liver microdissections from five healthy individuals and nine with cirrhosis demonstrates the effects of liver disease on the genome, including increased rates of mutation, complex structural variation and different mutational signatures., Author(s): Simon F. Brunner [sup.1] , Nicola D. Roberts [sup.1] , Luke A. Wylie [sup.1] , Luiza Moore [sup.1] , Sarah J. Aitken [sup.2] [sup.3] , Susan E. Davies [sup.3] [...]

The influence of phosphorus substitution of nitrogen in heterocyclic compounds on the vibrational spectroscopy as well as frontier molecular orbitals are analyzed. Nicotine with two nitrogen atoms in its structure is taken as the sample system to be studied computationally. By replacing the nitrogen atom in one or both rings of this molecule with phosphorus, three nicotine derivatives are created. The vibrational circular dichroism and infrared spectra of these four molecules in their monomer state, as well as the assemblies up to trimers are determined. The aforementioned spectra are calculated using static quantum chemical calculations employing a cluster‐weighted approach. The calculated gas phase spectra of nicotine are compared to their respective experimental spectra. It is observed that the nicotine derivatives with phosphorus in the methylpyrrolidine ring have considerably different gas phase and bulk phase vibrational circular dichroism spectra when compared to nicotine. The phosphorus substitution reduces the energy gap between the highest occupied molecular orbital and the lowest unoccupied molecular orbital as well as altering the polarizability and reactivity of the investigated molecules. [ABSTRACT FROM AUTHOR]

Several amino-acid based imidazolium ILs are investigated through the use of ab initio molecular dynamics (AIMD), which includes full polarization. The electric dipole moment distribution and polarization is used as a means of characterizing and understanding these complex systems. Various charge scheme methods were analyzed (Wannier function, Blöchl, Löwdin and Mulliken charge schemes and Voronoi tessellation) to determine their ability to predict dipole moments. These results and the following comparison of methods further deepen the knowledge of polarization by highlighting the importance of the anion and cation separately on polarizability contribution and the need to select a suitable method to predict these. The angular probability distribution is utilized to measure the degree of locality in monopole-dipole electrostatic interactions, which showed no preferential alignment over 700 pm. In addition, the IR and Raman spectra from Voronoi tessellation of [C2C1Im][ala] were analyzed. In these, the strongest signalling peaks showed consistency with experiment and the ability to differentiate between anion and cation components of the IL. [ABSTRACT FROM AUTHOR]

Dendrimers and supramolecular chemistry continue to fascinate researchers due to the endless unrevealed potential of their combination. This study investigates the self-assembly process of a series of hydrophobic triazolylferrocenyl dendrimers in aqueous medium. Deep investigation through NMR spectroscopy, absorption UV-vis spectroscopy along with theoretical simulations demonstrates that the ferrocenyl moieties interact intramolecularly and intermolecularly driving the self-assembly process. Data obtained by DLS, NTA, SEM, TEM, and EF-TEM demonstrate that these dendrimers, in water, spontaneously self-assemble through a hierarchical process. The dendrimers first self-assemble into uniform nanovesicles, which in turn self-assemble into larger vesosomes. The resulting vesosomes emit green non-traditional intrinsic fluorescence, which is a property that emerged from the self-assembled architectures. The vesosomes are efficiently uptaken by cancer cells and induce significant cytotoxic activity against the cancer cell line MCF-7, up to the submicromolar concentration. Positive dendritic effects are identified in the fluorescence intensity and in the cytotoxic activity of the vesosomes, which follow the trend G0-9Fc < G1-27Fc < G2-81Fc. This work showcases the remarkable potential of combining the two dynamic fields of dendrimers and supramolecular chemistry, which resulted in green fluorescent vesosomes capable of performing the dual role of cell imaging and killing, with potential applications in nanotheranostics., (© 2024 Wiley‐VCH GmbH.)

We report an iron-catalyzed decarboxylative C(sp 3 )-O bond-forming reaction under mild, base-free conditions with visible light irradiation. The transformation uses readily available and structurally diverse carboxylic acids, iron photocatalyst, and 2,2,6,6-tetramethylpiperidine 1-oxyl (TEMPO) derivatives as oxygenation reagents. The process exhibits a broad scope in acids possessing a wide range of stereoelectronic properties and functional groups. The developed reaction was applied to late-stage oxygenation of a series of bio-active molecules. The reaction leverages the ability of iron complexes to generate carbon-centered radicals directly from carboxylic acids by photoinduced carboxylate-to-iron charge transfer. Kinetic, electrochemical, EPR, UV/Vis, HRMS, and DFT studies revealed that TEMPO has a triple role in the reaction: as an oxygenation reagent, an oxidant to turn over the Fe-catalyst, and an internal base for the carboxylic acid deprotonation. The obtained TEMPO adducts represent versatile synthetic intermediates that were further engaged in C-C and C-heteroatom bond-forming reactions using commercial organo-photocatalysts and nucleophilic reagents., (© 2024 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)

The thermodynamics of newly designed tri- and tetraepoxyimidazolium NTf2 monomers reacting with several diamines used as curing agents to form epoxy/amine thermosets was studied. The ability of each epoxy/amine combination to induce cross-linking both through the substitution of multiple epoxy groups and through multiple additions to a single amine was investigated. Through an increased understanding of the thermodynamics of epoxy-amine polymerization in complex polyepoxy-ILs, it is possible to more thoroughly understand the factors affecting the reactivity in these complex systems. These calculations showed that while each possible epoxy-amine combination was exergonic to both forms of cross-linking, the degree to which both amines-induced cross-linking and epoxy-induced cross-linking was favored varied between epoxy-amine combinations. Thermodynamic results obtained using density functional theory were experimentally validated through differential scanning calorimetry results, wherein similar trends were noted between theory and experiment. Among the trends noted in amines-epoxy combinations tested, tetraepoxyimidazolium NTf2/PACM (i.e., a cycloaliphatic diamine) was found to be a prime candidate for amine cross-linking, with the addition of a second epoxy to a single amine group being notably the most negative of all epoxy-amine combinations at -77.6 kJ mol -1 . While in the case of epoxy cross-linking, the aliphatic polyetheramine denoted Jeffamine-D230-containing systems were found to be the most exergonic, with additions of primary amines to triepoxyimidazolium and tetraepoxyimidazolium NTf2 averaging -86.9 kJ mol -1 . Interaction energy analysis indicated that the aromatic amine named sulfanilamide is the most favorable to engage in reactions due to having the most negative interaction energies with already highly substituted epoxy monomers. These results can be used to adjust the cross-linking possibilities of tri- and tetraepoxyimidazolium NTf2/amine polymerization and give insight into the predominant cross-linking reactions in these unique systems.

The efficient capture of CO 2 from flue gas or directly from the atmosphere is a key subject to mitigate global warming, with several chemical and physical absorption methods previously reported. Through polarizable molecular dynamics (MD) simulations and high-level quantum chemical (QC) calculations, the physical and chemical absorption of CO 2 by ionic liquids based on imidazolium cations bearing oxirane groups was investigated. The ability of the imidazolium group to absorb CO 2 was found to be prevalent in both the tri- and tetraepoxidized imidazolium ionic liquids (ILs) with coordination numbers over 2 for CO 2 within the first solvation shell in both systems. Thermodynamic analysis of the addition of CO 2 to convert epoxy groups to cyclic carbonates also indicated that the overall reaction is exergonic for all systems tested, allowing for chemical absorption of CO 2 to also be favored. The rate-determining step of the chemical absorption involved the initial opening of the epoxy ring through addition of the chloride anion and was seen to vary greatly between the epoxy groups tested. Among the groups tested, the less sterically hindered monoepoxy side of the triepoxidized imidazolium was shown to be uniquely capable of undergoing intramolecular hydrogen bonding and thus lowering the barrier required for the intermediate structure to form during the reaction. Overall, this theoretical investigation highlights the potential for epoxidized imidazolium chloride ionic liquids for simultaneous chemical and physical absorption of CO 2 .