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3. sChemNET: a deep learning framework for predicting small molecules targeting microRNA function.

4. Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.

5. Space radiation damage rescued by inhibition of key spaceflight associated miRNAs.

6. A comprehensive SARS-CoV-2 and COVID-19 review, Part 2: host extracellular to systemic effects of SARS-CoV-2 infection.

7. Editorial: Carbon allocation, volume II.

8. SARS-CoV-2 Orphan Gene ORF10 Contributes to More Severe COVID-19 Disease.

9. Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts.

10. A comprehensive SARS-CoV-2 and COVID-19 review, Part 1: Intracellular overdrive for SARS-CoV-2 infection.

11. The interplay between lncRNAs, RNA-binding proteins and viral genome during SARS-CoV-2 infection reveals strong connections with regulatory events involved in RNA metabolism and immune response.

12. Foster thy young: enhanced prediction of orphan genes in assembled genomes.

13. TARGETED DOWN REGULATION OF CORE MITOCHONDRIAL GENES DURING SARS-COV-2 INFECTION.

14. System-wide transcriptome damage and tissue identity loss in COVID-19 patients.

15. Role of miR-2392 in driving SARS-CoV-2 infection.

16. orfipy: a fast and flexible tool for extracting ORFs.

17. The Great Deceiver: miR-2392's Hidden Role in Driving SARS-CoV-2 Infection.

18. Landscape of the Dark Transcriptome Revealed Through Re-mining Massive RNA-Seq Data.

19. pyrpipe: a Python package for RNA-Seq workflows.

20. African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures.

21. Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps.

22. MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets.

23. phylostratr: a framework for phylostratigraphy.

24. fagin: synteny-based phylostratigraphy and finer classification of young genes.

25. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.

26. Comprehensive transcriptome analyses correlated with untargeted metabolome reveal differentially expressed pathways in response to cell wall alterations.

27. Raising orphans from a metadata morass: A researcher's guide to re-use of public 'omics data.

28. Comparative Proteomics of Rubber Latex Revealed Multiple Protein Species of REF/SRPP Family Respond Diversely to Ethylene Stimulation among Different Rubber Tree Clones.

29. Identification and functional characterization of HbOsmotin from Hevea brasiliensis.

30. Integrating metabolomics and transcriptomics data to discover a biocatalyst that can generate the amine precursors for alkamide biosynthesis.

31. A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence.

32. Microbial Community and Chemical Characteristics of Swine Manure during Maturation.

33. QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.

34. ArcA Controls Metabolism, Chemotaxis, and Motility Contributing to the Pathogenicity of Avian Pathogenic Escherichia coli.

35. Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network.

36. The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean.

37. Modifications of membrane lipids in response to wounding of Arabidopsis thaliana leaves.

38. A systems biology approach toward understanding seed composition in soybean.

39. Coming of age: orphan genes in plants.

40. Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis.

41. Automatic extraction of biomolecular interactions: an empirical approach.

42. Comprehensive analysis of correlation coefficients estimated from pooling heterogeneous microarray data.

43. Identification and biosynthesis of acylphloroglucinols in Hypericum gentianoides.

44. A global approach to analysis and interpretation of metabolic data for plant natural product discovery.

45. Functional identification of valerena-1,10-diene synthase, a terpene synthase catalyzing a unique chemical cascade in the biosynthesis of biologically active sesquiterpenes in Valeriana officinalis.

46. Holocarboxylase synthetase 1 physically interacts with histone h3 in Arabidopsis.

47. Medicinal plants: a public resource for metabolomics and hypothesis development.

48. MetNet Online: a novel integrated resource for plant systems biology.

49. Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis.

50. Genetic dissection of methylcrotonyl CoA carboxylase indicates a complex role for mitochondrial leucine catabolism during seed development and germination.

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